
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/19/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/19/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/SKCM-TM/2861280/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/SKCM-TM/2844285/1.GDAC_clinicalDataPicker.Finished/SKCM-TM.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-TM", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SKCM-TM"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=165, in cluster file=244, common to both=158
[1] "Reduce the number of clustering variables from 80 to 73."
[1]  73 158
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               22               136 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               22               136 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               54               104 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               54               104 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13               145 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13               145 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               11               147 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               11               147 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               16               142 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               16               142 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               21               137 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               21               137 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               16               142 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               16               142 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               12               146 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               12               146 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               17               141 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               17               141 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                6               152 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                6               152 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               55               103 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               55               103 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               12               146 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               12               146 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               68                90 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               68                90 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               68                90 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               68                90 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               32               126 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               32               126 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               48               110 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               48               110 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 9                149 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 9                149 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                152 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                152 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                15                143 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                15                143 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                153 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                153 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                27                131 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                27                131 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                13                145 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                13                145 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                20                138 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                20                138 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                11                147 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                11                147 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                10                148 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                10                148 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                12                146 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                12                146 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                20                138 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                20                138 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                19                139 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                19                139 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                11                147 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                11                147 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                10                148 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                10                148 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                12                146 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                12                146 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                48                110 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                48                110 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                59                 99 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                59                 99 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                21                137 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                21                137 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                43                115 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                43                115 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3               155 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3               155 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               12               146 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               12               146 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                6               152 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                6               152 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               14               144 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               14               144 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               13               145 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               13               145 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               11               147 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               11               147 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               11               147 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               11               147 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               16               142 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               16               142 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               16               142 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               16               142 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               22               136 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               22               136 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               33               125 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               33               125 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               14               144 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               14               144 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               64                94 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               64                94 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               21               137 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               21               137 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                3               155 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                3               155 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               91                67 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               91                67 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               72                86 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               72                86 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                69                 89 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                69                 89 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                76                 82 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                76                 82 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                41                117 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                41                117 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                44                114 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                44                114 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 9                149 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 9                149 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                17                141 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                17                141 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                25                133 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                25                133 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                39                119 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                39                119 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                147 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                147 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                146 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                146 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                28                130 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                28                130 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                37                121 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                37                121 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                16                142 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                16                142 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                32                126 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                32                126 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                28                130 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                28                130 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                13                145 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                13                145 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                15                143 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                15                143 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 6                152 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 6                152 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                20                138 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                20                138 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                11                147 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                11                147 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               152 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               152 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "GENDER"                                
 [7] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [8] "RADIATIONTHERAPY"                      
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "DISTANT.METASTASIS"                    
[11] "LYMPH.NODE.METASTASIS"                 
[12] "TUMOR.STAGECODE"                       
[13] "NEOPLASM.DISEASESTAGE"                 
[14] "BATCHNUMBER"                           

Input Data has 14 rows and 158 columns.

[1] "Batch" "14"   
[1] "Last Follow UP"
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
        3687           NA         2167           NA          653         4511 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
        1513           82          194          345           98         1487 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
          NA         3564           NA         5926           NA           NA 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
        3265         1861           NA           NA          713           NA 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
         870           NA         6553          477           NA           NA 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
          NA           NA           NA           NA         3335         2399 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
          NA           NA         1455           NA         1205          979 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
          NA         1349           NA         1716         1136          440 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        1700        10523           NA           NA           NA         2401 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
         743           NA         1787         1446         1315         9567 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
        4134         5536          686         2717         1664         1673 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
        2296         2766         3101           NA          435         1691 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
         595         2042           NA         3931           NA           NA 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
          NA         4403         6175           NA           NA         7562 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
          NA         3150         4150         1265         1620          129 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
        3733          786          112          813           NA          714 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
          NA           NA           NA           NA           NA           NA 
TCGA-ER-A19N TCGA-ER-A19O TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
        1340           NA         2433         2443         1010         2448 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
          NA           NA           NA           NA           NA         1225 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
          NA           NA           NA           NA           NA         3080 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
          NA           NA           NA         4525         1617           NA 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
        1505           NA           NA         2366           NA          378 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-FW-A3TV TCGA-GN-A261 
        1504            6          699         1446           NA           NA 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
        3664           NA         2577           NA           NA           NA 
TCGA-GN-A26A TCGA-GN-A26D 
          NA         1204 
Variable 1:'AGE':	nDistinctValues=61,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=73,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=81,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 8:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'DISTANT.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'LYMPH.NODE.METASTASIS':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'TUMOR.STAGECODE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'NEOPLASM.DISEASESTAGE':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                   "GENDER"                "DISTANT.METASTASIS"   
[4] "LYMPH.NODE.METASTASIS" "TUMOR.STAGECODE"       "NEOPLASM.DISEASESTAGE"
[1] "TUMOR.?STAGE" "5"           
[1] "stage2"
vv
 T0  T1 T1A T1B  T2 T2A T2B  T3 T3A T3B  T4 T4A T4B TIS  TX 
  4   4  13   2  17  15   6   4  21  12   4   7  22   1   9 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 158 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=61, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=10, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=12, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                0  1
  1P GAIN MUTATED    9 13
  1P GAIN WILD-TYPE 72 60
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               22               132 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               13                60 
$`1P GAIN MUTATED`
TCGA-DA-A1IC TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A2GI 
       68.09        13.97        39.62         2.56        14.47        22.55 
TCGA-EE-A2GM TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2MD TCGA-EE-A2MM 
       75.48        13.87        55.59        67.13        47.28       167.87 
TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MU TCGA-ER-A19F TCGA-ER-A3ET TCGA-FR-A3YN 
       47.54        43.23        53.26        26.37        80.32        80.48 
TCGA-FS-A1Z0 TCGA-FS-A1ZU TCGA-GN-A266 TCGA-GN-A26A 
      202.62        26.56        10.09        32.48 

$`1P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 
      107.34        61.18        53.92        65.92        23.44        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       63.32        47.84        32.19        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       37.35        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91       182.01        89.33        54.71        55.00 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 
       90.94       101.95        14.30        19.56        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        61.51       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MR 
      204.62        96.23       144.76       203.01       248.61       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
      136.44        41.59         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J 
       26.73        13.81        23.47       138.77        12.59         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FS-A1YW 
      131.08        61.05        44.05        79.99        33.21       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
       48.59       228.59        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38        23.93       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       53.16        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       12.43        49.45         0.20        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
      120.46       117.93        84.72        64.41        62.76        39.58 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             2.56              0.20 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           202.62            345.96 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           45.255            48.215 
[1] "2.6 - 202.6 (45.3)" "0.2 - 346.0 (48.2)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     10   12
  1P GAIN WILD-TYPE   52   84
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              10                52
  MALE                12                84
                   vv
clus                 M0  M1 M1A M1B M1C
  1P GAIN MUTATED    21   0   0   0   0
  1P GAIN WILD-TYPE 113   2   2   1   2
D1V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  1P GAIN MUTATED   12  0   3   3  0   1   0   1  1  0
  1P GAIN WILD-TYPE 75  2   4  10  1   2  10   4 11  2
D1V5, multiclass
D1V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1P GAIN MUTATED         2        4        2        1         0         0
  1P GAIN WILD-TYPE      15        5       11       17         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  1P GAIN MUTATED           2         0          3          3          3
  1P GAIN WILD-TYPE         6         7          3         14         15
                   vv
clus                STAGE IV
  1P GAIN MUTATED          0
  1P GAIN WILD-TYPE        5
D1V7, multiclass

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED   27 26
  1Q GAIN WILD-TYPE 54 47
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               53               101 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               26                47 
$`1Q GAIN MUTATED`
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A1JW TCGA-D9-A3Z3 TCGA-DA-A1I1 TCGA-DA-A1I4 
        9.30        21.47         2.70         3.22       194.83        35.93 
TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A20B 
      107.34        65.92        68.09        10.49         8.65       109.64 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A1 
       13.97        39.62         2.56        14.47        55.89        78.94 
TCGA-EE-A2A6 TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GM TCGA-EE-A2GN 
       58.75       314.53       182.01        22.55        75.48        90.94 
TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2MD TCGA-EE-A2MN TCGA-EE-A2MQ 
       55.59        67.13        28.80        47.28        47.54        43.23 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AC TCGA-ER-A19D TCGA-ER-A19F 
       41.59        53.26       122.73        25.84        12.59        26.37 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZA 
       80.32        33.21        80.48       202.62        20.91        27.68 
TCGA-FS-A1ZF TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY 
       15.45        23.93        74.73        53.16        26.56        27.06 
TCGA-FS-A1ZZ TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       27.02        10.09        64.41        32.48        39.58 

$`1Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX 
      121.22        58.03        71.24       148.31        49.74         6.38 
TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 
       11.34        48.89        36.03       117.17        20.38       176.55 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 
       61.18        53.92        23.44        28.60       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
       29.82        33.73        14.70        26.86         4.93        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
      168.26        63.32        47.84        32.19        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       56.42        37.35       345.96        25.87        17.92        46.82 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GJ 
       24.43        39.25        47.54        43.23       135.91        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT 
       54.71        55.00       101.95        13.87        14.30        19.56 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG 
       21.67       129.24        19.76        61.51       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AD TCGA-EE-A3AE 
      248.61       103.56       136.44         4.24         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       13.81        23.47       138.77         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z4 
       44.05        79.99       216.92        48.59       228.59        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZH 
        7.76        48.85        53.52        40.27         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F0 
       47.38       101.26        11.41       148.77        49.48        77.79 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       50.14        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 
       76.41       120.46       117.93        84.72        62.76 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             2.56              0.20 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           314.53            345.96 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            39.62             48.89 
[1] "2.6 - 314.5 (39.6)" "0.2 - 346.0 (48.9)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
[1] "hr=" "1.3"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     20   34
  1Q GAIN WILD-TYPE   42   62
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              20                42
  MALE                34                62
                   vv
clus                M0 M1 M1A M1B M1C
  1Q GAIN MUTATED   46  0   1   0   1
  1Q GAIN WILD-TYPE 88  2   1   1   1
D2V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  1Q GAIN MUTATED   30  0   3   6  0   3   2   3  2  0
  1Q GAIN WILD-TYPE 57  2   4   7  1   0   8   2 10  2
D2V5, multiclass
D2V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1Q GAIN MUTATED         2        5        5        5         2         4
  1Q GAIN WILD-TYPE      15        4        8       13         6         5
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  1Q GAIN MUTATED           4         2          4          8          4
  1Q GAIN WILD-TYPE         4         5          2          9         14
                   vv
clus                STAGE IV
  1Q GAIN MUTATED          2
  1Q GAIN WILD-TYPE        3
D2V7, multiclass

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN MUTATED    7  6
  2P GAIN WILD-TYPE 74 67
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13               141 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6                67 
$`2P GAIN MUTATED`
TCGA-D3-A3MV TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A29R 
       21.47       168.26        63.32        13.97         2.56        14.47 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2MU TCGA-ER-A19N TCGA-FR-A3YN TCGA-FS-A1ZD 
       75.48        90.94        53.26        44.05        80.48        53.52 
TCGA-FS-A1ZK 
       23.93 

$`2P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
       14.70        26.86         4.93       109.64        78.87        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       39.62        32.19        44.35        18.58        56.42        37.35 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
      136.44        41.59         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
        6.41       131.08        61.05        79.99        80.32        33.21 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
        7.76        27.68        48.85        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       32.71        47.38       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
       53.16        26.56        49.48        27.06        27.02        77.79 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       50.14        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             2.56              0.20 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           168.26            345.96 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            53.26             47.54 
[1] "2.6 - 168.3 (53.3)" "0.2 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      3   10
  2P GAIN WILD-TYPE   59   86
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE               3                59
  MALE                10                86
                   vv
clus                 M0  M1 M1A M1B M1C
  2P GAIN MUTATED    12   0   0   0   0
  2P GAIN WILD-TYPE 122   2   2   1   2
D3V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  2P GAIN MUTATED    7  0   1   2  0   1   0   0  1  0
  2P GAIN WILD-TYPE 80  2   6  11  1   2  10   5 11  2
D3V5, multiclass
D3V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2P GAIN MUTATED         1        1        1        1         2         0
  2P GAIN WILD-TYPE      16        8       12       17         6         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  2P GAIN MUTATED           1         0          1          1          3
  2P GAIN WILD-TYPE         7         7          5         16         15
                   vv
clus                STAGE IV
  2P GAIN MUTATED          0
  2P GAIN WILD-TYPE        5
D3V7, multiclass

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                0  1
  2Q GAIN MUTATED    7  4
  2Q GAIN WILD-TYPE 74 69
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               11               143 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                4                69 
$`2Q GAIN MUTATED`
TCGA-D3-A3MV TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A2GM 
       21.47       168.26        63.32         2.56        14.47        75.48 
TCGA-EE-A2GN TCGA-EE-A2MU TCGA-ER-A19N TCGA-FR-A3YN TCGA-FS-A1ZD 
       90.94        53.26        44.05        80.48        53.52 

$`2Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
       14.70        26.86         4.93       109.64        78.87        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       13.97        39.62        32.19        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       37.35        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       55.00       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56       136.44        41.59         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        61.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       33.21       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF 
       28.08         7.76        27.68        48.85        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.02        77.79        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       22.98        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             2.56              0.20 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           168.26            345.96 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            53.52             47.54 
[1] "2.6 - 168.3 (53.5)" "0.2 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      3    8
  2Q GAIN WILD-TYPE   59   88
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               3                59
  MALE                 8                88
                   vv
clus                 M0  M1 M1A M1B M1C
  2Q GAIN MUTATED    10   0   0   0   0
  2Q GAIN WILD-TYPE 124   2   2   1   2
D4V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  2Q GAIN MUTATED    6  0   1   1  0   1   0   0  1  0
  2Q GAIN WILD-TYPE 81  2   6  12  1   2  10   5 11  2
D4V5, multiclass
D4V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2Q GAIN MUTATED         1        1        1        0         2         0
  2Q GAIN WILD-TYPE      16        8       12       18         6         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  2Q GAIN MUTATED           1         0          1          1          2
  2Q GAIN WILD-TYPE         7         7          5         16         16
                   vv
clus                STAGE IV
  2Q GAIN MUTATED          0
  2Q GAIN WILD-TYPE        5
D4V7, multiclass

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN MUTATED    8  8
  3P GAIN WILD-TYPE 73 65
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               16               138 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                8                65 
$`3P GAIN MUTATED`
TCGA-D3-A3MV TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A20H TCGA-EE-A29L 
       21.47        65.92        10.49       215.44       168.26         2.56 
TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A3AE 
       44.35        14.47       345.96        90.94        13.87        26.73 
TCGA-ER-A3ET TCGA-FS-A1ZK TCGA-FS-A4F2 TCGA-GN-A266 
       80.32        23.93        50.14        10.09 

$`3P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F8 
       61.18        53.92        23.44        68.09        28.60        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
      109.64        78.87        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V 
       32.19        18.58        56.42        37.35        55.89        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GR 
       89.33        54.71        55.00        75.48       101.95        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG 
        4.24       122.73        25.84         3.68        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
      138.77        12.59        26.37         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
       44.05        79.99        33.21        80.48       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       47.38       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 
       26.56        49.48        27.06        27.02        77.79        12.43 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       49.45         0.20        22.98        47.54        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             2.56              0.20 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           345.96            314.53 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            35.54             47.69 
[1] "2.6 - 346.0 (35.5)" "0.2 - 314.5 (47.7)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      8    8
  3P GAIN WILD-TYPE   54   88
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               8                54
  MALE                 8                88
                   vv
clus                 M0  M1 M1A M1B M1C
  3P GAIN MUTATED    15   0   0   0   0
  3P GAIN WILD-TYPE 119   2   2   1   2
D5V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  3P GAIN MUTATED    6  0   2   2  0   1   1   0  2  1
  3P GAIN WILD-TYPE 81  2   5  11  1   2   9   5 10  1
D5V5, multiclass
D5V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3P GAIN MUTATED         1        1        1        1         1         0
  3P GAIN WILD-TYPE      16        8       12       17         7         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  3P GAIN MUTATED           1         0          1          4          3
  3P GAIN WILD-TYPE         7         7          5         13         15
                   vv
clus                STAGE IV
  3P GAIN MUTATED          0
  3P GAIN WILD-TYPE        5
D5V7, multiclass

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED   11 10
  3Q GAIN WILD-TYPE 70 63
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               21               133 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               10                63 
$`3Q GAIN MUTATED`
TCGA-D3-A3MV TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A182 TCGA-EE-A20F 
       21.47        65.92        10.49       215.44        14.70        78.87 
TCGA-EE-A20H TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2GN TCGA-EE-A2GP 
      168.26        44.35        14.47       345.96        90.94        13.87 
TCGA-EE-A2M6 TCGA-EE-A2ML TCGA-EE-A3AE TCGA-ER-A19M TCGA-ER-A3ET TCGA-FS-A1ZK 
      129.24       203.01        26.73        61.05        80.32        23.93 
TCGA-FS-A4F2 TCGA-GN-A266 TCGA-GN-A26A 
       50.14        10.09        32.48 

$`3Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F8 
       61.18        53.92        23.44        68.09        28.60        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        33.73        26.86         4.93       109.64 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       18.58        56.42        37.35        55.89        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS 
       54.71        55.00        75.48       101.95        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13        21.67        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      144.76       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
        3.68        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A3YN 
        6.41       131.08        44.05        79.99        33.21        80.48 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
        7.76        27.68        48.85        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
        9.70        32.71        47.38       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       77.79        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       76.41       120.46       117.93        84.72        64.41        62.76 
TCGA-GN-A26D 
       39.58 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            10.09              0.20 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           345.96            314.53 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            50.14             47.54 
[1] "10.1 - 346.0 (50.1)" "0.2 - 314.5 (47.5)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     10   11
  3Q GAIN WILD-TYPE   52   85
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              10                52
  MALE                11                85
                   vv
clus                 M0  M1 M1A M1B M1C
  3Q GAIN MUTATED    20   0   0   0   0
  3Q GAIN WILD-TYPE 114   2   2   1   2
D6V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  3Q GAIN MUTATED   10  0   3   3  0   1   1   0  1  1
  3Q GAIN WILD-TYPE 77  2   4  10  1   2   9   5 11  1
D6V5, multiclass
D6V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3Q GAIN MUTATED         2        1        2        3         1         0
  3Q GAIN WILD-TYPE      15        8       11       15         7         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  3Q GAIN MUTATED           1         0          2          4          3
  3Q GAIN WILD-TYPE         7         7          4         13         15
                   vv
clus                STAGE IV
  3Q GAIN MUTATED          0
  3Q GAIN WILD-TYPE        5
D6V7, multiclass

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                0  1
  4P GAIN MUTATED   10  6
  4P GAIN WILD-TYPE 71 67
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               16               138 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                6                67 
$`4P GAIN MUTATED`
TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A3F5 TCGA-EE-A29P TCGA-EE-A2GB TCGA-EE-A2GI 
       48.89       194.83       215.44        56.42        47.54        22.55 
TCGA-EE-A2GP TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       13.87        80.32        80.48        47.38        23.93       101.26 
TCGA-FS-A1ZU TCGA-FS-A4F2 TCGA-GN-A264 TCGA-GN-A26D 
       26.56        50.14       117.93        39.58 

$`4P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW 
       49.74         2.70         6.38        11.34         3.22        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC 
       46.82        78.94        24.43        39.25        58.75        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91       182.01        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       75.48        90.94       101.95        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       12.59        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        33.21       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-FS-A1ZR 
       40.27        15.45         9.70        32.71        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
      148.77        53.16        49.48        27.06        27.02        77.79 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       12.43        49.45         0.20        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46        84.72        10.09        64.41        62.76        32.48 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            13.87              0.20 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           215.44            345.96 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           49.515            47.410 
[1] "13.9 - 215.4 (49.5)" "0.2 - 346.0 (47.4)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
[1] "hr=" "1.5"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      7    9
  4P GAIN WILD-TYPE   55   87
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               7                55
  MALE                 9                87
                   vv
clus                 M0  M1 M1A M1B M1C
  4P GAIN MUTATED    14   0   0   0   0
  4P GAIN WILD-TYPE 120   2   2   1   2
D7V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  4P GAIN MUTATED    8  0   3   0  0   0   1   1  2  0
  4P GAIN WILD-TYPE 79  2   4  13  1   3   9   4 10  2
D7V5, multiclass
D7V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4P GAIN MUTATED         1        1        1        1         0         0
  4P GAIN WILD-TYPE      16        8       12       17         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  4P GAIN MUTATED           4         1          2          2          2
  4P GAIN WILD-TYPE         4         6          4         15         16
                   vv
clus                STAGE IV
  4P GAIN MUTATED          0
  4P GAIN WILD-TYPE        5
D7V7, multiclass

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                0  1
  4Q GAIN MUTATED    8  4
  4Q GAIN WILD-TYPE 73 69
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               12               142 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4                69 
$`4Q GAIN MUTATED`
TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A3F5 TCGA-EE-A29D TCGA-EE-A29P TCGA-EE-A2GB 
       48.89       194.83       215.44        13.97        56.42        47.54 
TCGA-EE-A2GP TCGA-EE-A3AD TCGA-FR-A3YN TCGA-FS-A1ZU TCGA-GN-A264 TCGA-GN-A26D 
       13.87         3.68        80.48        26.56       117.93        39.58 

$`4Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW 
       49.74         2.70         6.38        11.34         3.22        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q 
       39.62        32.19         2.56        44.35        18.58        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       75.48        90.94       101.95        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
       25.84        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       80.32        33.21       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW 
      101.26        74.73        11.41       148.77        53.16        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       27.06        27.02        77.79        50.14        12.43        49.45 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 
        0.20        22.98        47.54        76.41       120.46        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       10.09        64.41        62.76        32.48 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             3.68              0.20 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           215.44            345.96 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           48.215            47.540 
[1] "3.7 - 215.4 (48.2)" "0.2 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
[1] "hr=" "1.6"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      4    8
  4Q GAIN WILD-TYPE   58   88
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               4                58
  MALE                 8                88
                   vv
clus                 M0  M1 M1A M1B M1C
  4Q GAIN MUTATED     9   0   0   0   0
  4Q GAIN WILD-TYPE 125   2   2   1   2
D8V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  4Q GAIN MUTATED    4  0   2   1  0   0   1   0  2  0
  4Q GAIN WILD-TYPE 83  2   5  12  1   3   9   5 10  2
D8V5, multiclass
D8V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4Q GAIN MUTATED         0        0        1        0         0         0
  4Q GAIN WILD-TYPE      17        9       12       18         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  4Q GAIN MUTATED           3         0          1          2          3
  4Q GAIN WILD-TYPE         5         7          5         15         15
                   vv
clus                STAGE IV
  4Q GAIN MUTATED          0
  4Q GAIN WILD-TYPE        5
D8V7, multiclass

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED   12  4
  5P GAIN WILD-TYPE 69 69
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               16               138 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                4                69 
$`5P GAIN MUTATED`
TCGA-D9-A148 TCGA-D9-A1JW TCGA-DA-A1HV TCGA-EE-A20H TCGA-EE-A29T TCGA-EE-A2A0 
      148.31         2.70        48.89       168.26       345.96        46.82 
TCGA-EE-A2GM TCGA-EE-A2M6 TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AE TCGA-ER-A19M 
       75.48       129.24       248.61       136.44        26.73        61.05 
TCGA-FS-A1ZE TCGA-FS-A1ZK TCGA-FW-A3I3 TCGA-FW-A3TU 
       40.27        23.93         0.20        47.54 

$`5P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 
      121.22        58.03        71.24         9.30        21.47        49.74 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        6.38        11.34         3.22        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
        4.93       109.64        78.87        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 
       37.35        14.47        55.89        25.87        17.92        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       67.13        21.67        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT 
      203.01       167.87        47.54        43.23       103.56        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF 
       53.26         4.24       122.73        25.84         3.68        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
       44.05        79.99        80.32        33.21        80.48       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       27.68        48.85        53.52        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       47.38       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       26.56        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       12.43        49.45        22.98        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.20              2.56 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           345.96            314.53 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            54.97             47.46 
[1] "0.2 - 346.0 (55.0)" "2.6 - 314.5 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "2.9"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      8    9
  5P GAIN WILD-TYPE   54   87
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE               8                54
  MALE                 9                87
                   vv
clus                 M0  M1 M1A M1B M1C
  5P GAIN MUTATED    14   1   0   1   0
  5P GAIN WILD-TYPE 120   1   2   0   2
D9V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  5P GAIN MUTATED   11  0   0   1  0   1   1   0  1  1
  5P GAIN WILD-TYPE 76  2   7  12  1   2   9   5 11  1
D9V5, multiclass
D9V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5P GAIN MUTATED         3        1        1        2         1         0
  5P GAIN WILD-TYPE      14        8       12       16         7         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  5P GAIN MUTATED           2         0          0          2          0
  5P GAIN WILD-TYPE         6         7          6         15         18
                   vv
clus                STAGE IV
  5P GAIN MUTATED          1
  5P GAIN WILD-TYPE        4
D9V7, multiclass

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                0  1
  5Q GAIN MUTATED    4  2
  5Q GAIN WILD-TYPE 77 71
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                6               148 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                2                71 
$`5Q GAIN MUTATED`
TCGA-D9-A1JW TCGA-EE-A2MP TCGA-EE-A2MS TCGA-FS-A1ZD TCGA-FS-A1ZK TCGA-FW-A3TU 
        2.70       248.61       136.44        53.52        23.93        47.54 

$`5Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
       49.74         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR 
      144.76       203.01       167.87        47.54        43.23       103.56 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        6.41       131.08        61.05        44.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       33.21        80.48       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE 
       20.91        28.08         7.76        27.68        48.85        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        32.71        47.38       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.02        77.79        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       22.98        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              2.7               0.2 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           248.61            345.96 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            50.53             47.54 
[1] "2.7 - 248.6 (50.5)" "0.2 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      2    4
  5Q GAIN WILD-TYPE   60   92
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               2                60
  MALE                 4                92
                   vv
clus                 M0  M1 M1A M1B M1C
  5Q GAIN MUTATED     5   0   0   0   0
  5Q GAIN WILD-TYPE 129   2   2   1   2
D10V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  5Q GAIN MUTATED    4  0   0   0  0   1   0   0  0  0
  5Q GAIN WILD-TYPE 83  2   7  13  1   2  10   5 12  2
D10V5, multiclass
D10V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5Q GAIN MUTATED         1        0        0        2         1         0
  5Q GAIN WILD-TYPE      16        9       13       16         7         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  5Q GAIN MUTATED           0         0          0          0          0
  5Q GAIN WILD-TYPE         8         7          6         17         18
                   vv
clus                STAGE IV
  5Q GAIN MUTATED          0
  5Q GAIN WILD-TYPE        5
D10V7, multiclass

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                0  1
  6P GAIN MUTATED   25 28
  6P GAIN WILD-TYPE 56 45
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               53               101 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               28                45 
$`6P GAIN MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D9-A149 TCGA-D9-A1JW TCGA-DA-A1HV TCGA-DA-A1I0 
      121.22        58.03        49.74         2.70        48.89        20.38 
TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 
      176.55        65.92        10.49         8.65        33.73         4.93 
TCGA-EE-A20H TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A5 TCGA-EE-A2GB 
      168.26        56.42        14.47        55.89        39.25        47.54 
TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR 
      314.53       182.01        89.33        90.94        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM 
       55.59        19.56        67.13       204.62       144.76       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A3AD TCGA-EE-A3AF 
       47.54       248.61        43.23       136.44         3.68        13.81 
TCGA-ER-A19M TCGA-ER-A19N TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZE TCGA-FS-A1ZK 
       61.05        44.05       202.62        20.91        40.27        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F2 TCGA-FW-A3I3 
       74.73        26.56        27.06        27.02        50.14         0.20 
TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A26A TCGA-GN-A26D 
       47.54       117.93        10.09        32.48        39.58 

$`6P GAIN WILD-TYPE`
TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A1JX TCGA-D9-A3Z1 
       71.24         9.30        21.47       148.31         6.38        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 
        3.22        36.03       117.17       194.83        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 
       61.18        53.92        23.44        68.09        28.60       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F 
       15.68        29.82        14.70        26.86       109.64        78.87 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       44.35        18.58        37.35       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GE 
       46.82        78.94        24.43        58.75        43.23       135.91 
TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 
       22.55        54.71        55.00        75.48       101.95        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MR TCGA-EE-A2MT 
      103.17        16.96        96.23       203.01       103.56        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AG 
       53.26         4.24       122.73        25.84        26.73        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A1A1 
      138.77        12.59        26.37         6.41       131.08        79.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       80.32        33.21        80.48       216.92        48.59       228.59 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZF 
       28.08         7.76        27.68        48.85        53.52        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS 
        9.70        32.71        47.38       101.26        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 
       53.16        49.48        77.79        12.43        49.45        22.98 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       76.41       120.46        84.72        64.41        62.76 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.20              2.56 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           314.53            345.96 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            47.54             47.84 
[1] "0.2 - 314.5 (47.5)" "2.6 - 346.0 (47.8)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     26   29
  6P GAIN WILD-TYPE   36   67
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              26                36
  MALE                29                67
                   vv
clus                M0 M1 M1A M1B M1C
  6P GAIN MUTATED   44  1   1   0   0
  6P GAIN WILD-TYPE 90  1   1   1   2
D11V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  6P GAIN MUTATED   33  0   3   4  0   2   3   0  2  0
  6P GAIN WILD-TYPE 54  2   4   9  1   1   7   5 10  2
D11V5, multiclass
D11V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6P GAIN MUTATED         5        3        5        6         3         5
  6P GAIN WILD-TYPE      12        6        8       12         5         4
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  6P GAIN MUTATED           5         0          3          5          4
  6P GAIN WILD-TYPE         3         7          3         12         14
                   vv
clus                STAGE IV
  6P GAIN MUTATED          1
  6P GAIN WILD-TYPE        4
D11V7, multiclass

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                0  1
  6Q GAIN MUTATED    7  5
  6Q GAIN WILD-TYPE 74 68
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               12               142 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                5                68 
$`6Q GAIN MUTATED`
TCGA-D3-A1Q7 TCGA-D9-A149 TCGA-DA-A1I0 TCGA-EE-A29R TCGA-EE-A2GS TCGA-EE-A2GT 
      121.22        49.74        20.38        14.47        55.59        19.56 
TCGA-EE-A2MI TCGA-EE-A2MS TCGA-ER-A19M TCGA-FS-A1ZK TCGA-FS-A4F2 TCGA-FW-A3TU 
      204.62       136.44        61.05        23.93        50.14        47.54 

$`6Q GAIN WILD-TYPE`
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A1JW 
       58.03        71.24         9.30        21.47       148.31         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        6.38        11.34         3.22        48.89        36.03       117.17 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       14.30        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ 
       61.51        47.28       103.27       103.17        16.96        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       33.21        80.48       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM 
       40.27        15.45         9.70        32.71        47.38       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       74.73        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.06        27.02        77.79        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       22.98        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            14.47              0.20 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           204.62            345.96 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            49.94             47.46 
[1] "14.5 - 204.6 (49.9)" "0.2 - 346.0 (47.5)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      6    6
  6Q GAIN WILD-TYPE   56   90
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               6                56
  MALE                 6                90
                   vv
clus                 M0  M1 M1A M1B M1C
  6Q GAIN MUTATED    10   0   1   0   0
  6Q GAIN WILD-TYPE 124   2   1   1   2
D12V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  6Q GAIN MUTATED    8  0   0   2  0   0   0   0  1  0
  6Q GAIN WILD-TYPE 79  2   7  11  1   3  10   5 11  2
D12V5, multiclass
D12V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6Q GAIN MUTATED         0        0        3        2         1         1
  6Q GAIN WILD-TYPE      17        9       10       16         7         8
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  6Q GAIN MUTATED           1         0          0          0          2
  6Q GAIN WILD-TYPE         7         7          6         17         16
                   vv
clus                STAGE IV
  6Q GAIN MUTATED          0
  6Q GAIN WILD-TYPE        5
D12V7, multiclass

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                0  1
  7P GAIN MUTATED   33 33
  7P GAIN WILD-TYPE 48 40
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               66                88 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               33                40 
$`7P GAIN MUTATED`
TCGA-D3-A3MO TCGA-D9-A149 TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY 
        9.30        49.74         6.38         3.22        48.89       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
       65.92        68.09        33.73       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A2A0 
       13.97        39.62        18.58        56.42       345.96        46.82 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       58.75        47.54       135.91       182.01        22.55        89.33 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2M6 TCGA-EE-A2M7 
       75.48        90.94       101.95        13.87       129.24        28.80 
TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS 
       16.96       144.76        47.54       248.61        43.23       136.44 
TCGA-EE-A2MU TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       53.26         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19J TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZD 
        6.41        33.21        80.48        20.91         7.76        53.52 
TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F2 
       32.71       101.26        11.41        27.06        27.02        50.14 
TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
        0.20       117.93        10.09        64.41        32.48        39.58 

$`7P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A1JW 
      121.22        58.03        71.24        21.47       148.31         2.70 
TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
       11.34        36.03       194.83        23.44        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        4.93       109.64        78.87        32.19         2.56        44.35 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 
       37.35        14.47        55.89        25.87        17.92        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GK TCGA-EE-A2GL 
       24.43        39.25        43.23       314.53        54.71        55.00 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M8 
       14.30        55.59        19.56        67.13        21.67        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ 
       61.51        47.28       103.27       103.17       204.62        96.23 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB 
      203.01       167.87       103.56        41.59         4.24       122.73 
TCGA-EE-A3AC TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       25.84        12.59        26.37       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       28.08        27.68        48.85        40.27        15.45         9.70 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       47.38        23.93        74.73       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU 
       49.48        77.79        12.43        49.45        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A268 
       76.41       120.46        84.72        62.76 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.20              2.56 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           345.96            314.53 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            47.69             47.46 
[1] "0.2 - 346.0 (47.7)" "2.6 - 314.5 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" 
[1] "hr=" "1.1"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     24   44
  7P GAIN WILD-TYPE   38   52
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              24                38
  MALE                44                52
                   vv
clus                M0 M1 M1A M1B M1C
  7P GAIN MUTATED   54  2   2   0   2
  7P GAIN WILD-TYPE 80  0   0   1   0
D13V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  7P GAIN MUTATED   34  0   5   7  0   1   4   4  4  2
  7P GAIN WILD-TYPE 53  2   2   6  1   2   6   1  8  0
D13V5, multiclass
D13V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7P GAIN MUTATED         6        5        2        8         3         2
  7P GAIN WILD-TYPE      11        4       11       10         5         7
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  7P GAIN MUTATED           4         2          5          9          6
  7P GAIN WILD-TYPE         4         5          1          8         12
                   vv
clus                STAGE IV
  7P GAIN MUTATED          5
  7P GAIN WILD-TYPE        0
D13V7, multiclass

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                0  1
  7Q GAIN MUTATED   34 32
  7Q GAIN WILD-TYPE 47 41
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               66                88 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               32                41 
$`7Q GAIN MUTATED`
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV 
        9.30        21.47        49.74         6.38         3.22        48.89 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A181 
       53.92        65.92        68.09       215.44        15.68        33.73 
TCGA-EE-A183 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29N 
       26.86       168.26        63.32        47.84        39.62        18.58 
TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE 
       56.42       345.96        46.82        58.75        47.54       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2M6 
      182.01        22.55        75.48       101.95        13.87       129.24 
TCGA-EE-A2M7 TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS 
       28.80        16.96       144.76       248.61        43.23       136.44 
TCGA-EE-A2MU TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19J 
       53.26        26.73        13.81        23.47       138.77         6.41 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZF 
       33.21        80.48        20.91         7.76        53.52        15.45 
TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       32.71       101.26        11.41       148.77        27.06        27.02 
TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       50.14         0.20       117.93        64.41        32.48        39.58 

$`7Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A3Z1 
      121.22        58.03        71.24       148.31         2.70        11.34 
TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EE-A17X 
       36.03       194.83        23.44        28.60        10.49        29.82 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29D 
        8.65        14.70         4.93       109.64        78.87        13.97 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       32.19         2.56        44.35        37.35        14.47        55.89 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GC 
       25.87        17.92        78.94        24.43        39.25        43.23 
TCGA-EE-A2GD TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR 
      314.53        89.33        54.71        55.00        90.94        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC 
       55.59        19.56        67.13        21.67        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML 
       47.28       103.27       103.17       204.62        96.23       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB 
      167.87        47.54       103.56        41.59         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M 
       25.84         3.68        12.59        26.37       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG 
      202.62        28.08        27.68        48.85        40.27         9.70 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       47.38        23.93        74.73        53.16        26.56        49.48 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       77.79        12.43        49.45        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 
      120.46        84.72        10.09        62.76 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.20              2.56 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           345.96            314.53 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            47.69             47.54 
[1] "0.2 - 346.0 (47.7)" "2.6 - 314.5 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
[1] "hr=" "1"  
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     26   42
  7Q GAIN WILD-TYPE   36   54
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              26                36
  MALE                42                54
                   vv
clus                M0 M1 M1A M1B M1C
  7Q GAIN MUTATED   56  2   2   0   2
  7Q GAIN WILD-TYPE 78  0   0   1   0
D14V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  7Q GAIN MUTATED   34  0   5   6  0   2   5   4  5  2
  7Q GAIN WILD-TYPE 53  2   2   7  1   1   5   1  7  0
D14V5, multiclass
D14V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7Q GAIN MUTATED         6        4        2        9         2         2
  7Q GAIN WILD-TYPE      11        5       11        9         6         7
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  7Q GAIN MUTATED           5         2          5         11          6
  7Q GAIN WILD-TYPE         3         5          1          6         12
                   vv
clus                STAGE IV
  7Q GAIN MUTATED          5
  7Q GAIN WILD-TYPE        0
D14V7, multiclass

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                0  1
  8P GAIN MUTATED   15 17
  8P GAIN WILD-TYPE 66 56
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               32               122 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               17                56 
$`8P GAIN MUTATED`
TCGA-D3-A3CC TCGA-D3-A3MV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       71.24        21.47       117.17       194.83       176.55        35.93 
TCGA-DA-A3F5 TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A2GM TCGA-EE-A2GN 
      215.44        33.73        39.62        14.47        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2M6 TCGA-EE-A3AD TCGA-ER-A19J TCGA-ER-A19L 
      101.95        13.87       129.24         3.68         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-FS-A1YW TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZK 
       61.05        44.05       216.92         7.76        53.52        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZY TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A267 
       74.73        11.41        27.06        50.14         0.20        64.41 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

$`8P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        58.03         9.30       148.31        49.74         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 
        6.38        11.34         3.22        48.89        36.03        20.38 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       28.60        10.49        15.68        29.82         8.65        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       54.71        55.00        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
       21.67        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE 
       41.59        53.26         4.24       122.73        25.84        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A1A1 
       13.81        23.47       138.77        12.59        26.37        79.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       80.32        33.21        80.48        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF 
       20.91        28.08        27.68        48.85        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A1ZT 
        9.70        32.71        47.38       101.26       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC 
       26.56        49.48        27.02        77.79        12.43        49.45 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       22.98        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A268 
       10.09        62.76 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.20              2.56 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           216.92            345.96 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           47.095            47.540 
[1] "0.2 - 216.9 (47.1)" "2.6 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" 
[1] "hr=" "1.1"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     10   22
  8P GAIN WILD-TYPE   52   74
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              10                52
  MALE                22                74
                   vv
clus                 M0  M1 M1A M1B M1C
  8P GAIN MUTATED    26   2   0   0   0
  8P GAIN WILD-TYPE 108   0   2   1   2
D15V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  8P GAIN MUTATED   16  0   3   3  0   1   2   0  4  0
  8P GAIN WILD-TYPE 71  2   4  10  1   2   8   5  8  2
D15V5, multiclass
D15V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8P GAIN MUTATED         1        0        2        5         2         1
  8P GAIN WILD-TYPE      16        9       11       13         6         8
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  8P GAIN MUTATED           4         0          2          4          6
  8P GAIN WILD-TYPE         4         7          4         13         12
                   vv
clus                STAGE IV
  8P GAIN MUTATED          2
  8P GAIN WILD-TYPE        3
D15V7, multiclass

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED   22 26
  8Q GAIN WILD-TYPE 59 47
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               48               106 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               26                47 
$`8Q GAIN MUTATED`
TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A1JW TCGA-DA-A1HY TCGA-DA-A1I0 
       71.24         9.30        21.47         2.70       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17Z 
      194.83       176.55        35.93        10.49       215.44         8.65 
TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A5 TCGA-EE-A2GH 
       33.73        39.62        14.47       345.96        39.25       182.01 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M6 
       75.48        90.94       101.95        13.87        55.59       129.24 
TCGA-EE-A2MN TCGA-EE-A3AB TCGA-EE-A3AD TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       47.54       122.73         3.68         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z7 
       44.05        80.32       216.92       228.59       202.62         7.76 
TCGA-FS-A1ZD TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU 
       53.52        23.93        74.73        11.41       148.77        26.56 
TCGA-FS-A1ZY TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       27.06        50.14         0.20        64.41        32.48        39.58 

$`8Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-D9-A3Z1 
      121.22        58.03       148.31        49.74         6.38        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
        3.22        48.89        36.03       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EE-A17X 
       65.92        23.44        68.09        28.60        15.68        29.82 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       63.32        47.84        13.97        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       18.58        56.42        37.35        55.89        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       46.82        78.94        24.43        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91        22.55        89.33        54.71        55.00 
TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 
       14.30        19.56        67.13        21.67        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       144.76       203.01       167.87       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC 
      103.56       136.44        41.59        53.26         4.24        25.84 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YX TCGA-FS-A1Z3 TCGA-FS-A1Z4 
       79.99        33.21        80.48        48.59        20.91        28.08 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       27.68        48.85        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FS-A4F0 
       47.38       101.26        53.16        49.48        27.02        77.79 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       12.43        49.45        22.98        47.54        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 
      117.93        84.72        10.09        62.76 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.20              2.56 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           345.96            314.53 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            48.84             47.54 
[1] "0.2 - 346.0 (48.8)" "2.6 - 314.5 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
[1] "hr=" "1"  
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     16   32
  8Q GAIN WILD-TYPE   46   64
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              16                46
  MALE                32                64
                   vv
clus                M0 M1 M1A M1B M1C
  8Q GAIN MUTATED   40  2   1   0   0
  8Q GAIN WILD-TYPE 94  0   1   1   2
D16V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  8Q GAIN MUTATED   25  0   4   3  0   2   3   1  5  1
  8Q GAIN WILD-TYPE 62  2   3  10  1   1   7   4  7  1
D16V5, multiclass
D16V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8Q GAIN MUTATED         3        1        4        6         3         2
  8Q GAIN WILD-TYPE      14        8        9       12         5         7
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  8Q GAIN MUTATED           5         1          3          5          7
  8Q GAIN WILD-TYPE         3         6          3         12         11
                   vv
clus                STAGE IV
  8Q GAIN MUTATED          2
  8Q GAIN WILD-TYPE        3
D16V7, multiclass

Clustering(17) Variable = 11p gain mutation analysis
D17V1, survival
                    sevent
clus2                 0  1
  11P GAIN MUTATED    4  5
  11P GAIN WILD-TYPE 77 68
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 9                145 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 68 
$`11P GAIN MUTATED`
TCGA-DA-A3F3 TCGA-EE-A29T TCGA-EE-A2GB TCGA-EE-A2GP TCGA-EE-A2MC TCGA-ER-A19N 
       10.49       345.96        47.54        13.87        61.51        44.05 
TCGA-FS-A1ZD TCGA-FS-A1ZS TCGA-FS-A4F2 
       53.52       148.77        50.14 

$`11P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       28.60       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
       61.05        79.99        80.32        33.21        80.48       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       27.68        48.85        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZT 
       47.38        23.93       101.26        74.73        11.41        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 
       26.56        49.48        27.06        27.02        77.79        12.43 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       49.45         0.20        22.98        47.54        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             10.49               0.20 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            345.96             314.53 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             50.14              47.54 
[1] "10.5 - 346.0 (50.1)" "0.2 - 314.5 (47.5)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"11P GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"11P GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"11P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
D17V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2    7
  11P GAIN WILD-TYPE   60   89
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                2                 60
  MALE                  7                 89
                    vv
clus                  M0  M1 M1A M1B M1C
  11P GAIN MUTATED     8   0   0   0   0
  11P GAIN WILD-TYPE 126   2   2   1   2
D17V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  11P GAIN MUTATED    4  0   2   0  0   0   1   0  0  1
  11P GAIN WILD-TYPE 83  2   5  13  1   3   9   5 12  1
D17V5, multiclass
D17V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11P GAIN MUTATED         1        0        0        1         1         0
  11P GAIN WILD-TYPE      16        9       13       17         7         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  11P GAIN MUTATED           1         0          1          2          0
  11P GAIN WILD-TYPE         7         7          5         15         18
                    vv
clus                 STAGE IV
  11P GAIN MUTATED          0
  11P GAIN WILD-TYPE        5
D17V7, multiclass

Clustering(18) Variable = 11q gain mutation analysis
D18V1, survival
                    sevent
clus2                 0  1
  11Q GAIN MUTATED    2  4
  11Q GAIN WILD-TYPE 79 69
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                148 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                 69 
$`11Q GAIN MUTATED`
TCGA-DA-A3F3 TCGA-EE-A2GP TCGA-ER-A19N TCGA-FS-A1ZD TCGA-FS-A1ZS TCGA-FS-A4F2 
       10.49        13.87        44.05        53.52       148.77        50.14 

$`11Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       28.60       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       90.94       101.95        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        61.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       33.21        80.48       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE 
       20.91        28.08         7.76        27.68        48.85        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       74.73        11.41        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       27.02        77.79        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       47.54        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             10.49               0.20 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            148.77             345.96 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            47.095             47.540 
[1] "10.5 - 148.8 (47.1)" "0.2 - 346.0 (47.5)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"11Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"11Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"11Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1    5
  11Q GAIN WILD-TYPE   61   91
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                1                 61
  MALE                  5                 91
                    vv
clus                  M0  M1 M1A M1B M1C
  11Q GAIN MUTATED     5   0   0   0   0
  11Q GAIN WILD-TYPE 129   2   2   1   2
D18V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  11Q GAIN MUTATED    3  0   1   0  0   0   1   0  0  0
  11Q GAIN WILD-TYPE 84  2   6  13  1   3   9   5 12  2
D18V5, multiclass
D18V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11Q GAIN MUTATED         0        0        0        1         1         0
  11Q GAIN WILD-TYPE      17        9       13       17         7         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  11Q GAIN MUTATED           1         0          0          2          0
  11Q GAIN WILD-TYPE         7         7          6         15         18
                    vv
clus                 STAGE IV
  11Q GAIN MUTATED          0
  11Q GAIN WILD-TYPE        5
D18V7, multiclass

Clustering(19) Variable = 12p gain mutation analysis
D19V1, survival
                    sevent
clus2                 0  1
  12P GAIN MUTATED    8  7
  12P GAIN WILD-TYPE 73 66
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                15                139 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 7                 66 
$`12P GAIN MUTATED`
TCGA-D3-A3MV TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A3F5 TCGA-EE-A20H TCGA-EE-A2A6 
       21.47        61.18        65.92       215.44       168.26        58.75 
TCGA-EE-A2GB TCGA-EE-A2M6 TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A3PL 
       47.54       129.24         6.41       131.08        61.05        33.21 
TCGA-FS-A1ZM TCGA-FS-A1ZU TCGA-GN-A26A 
      101.26        26.56        32.48 

$`12P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 
       53.92        23.44        68.09        28.60        10.49        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
      109.64        78.87        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       78.94        24.43        39.25        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       67.13        21.67        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1YW 
       26.37        44.05        79.99        80.32        80.48       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       27.68        48.85        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       32.71        47.38        23.93        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       53.16        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       12.43        49.45         0.20        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26D 
       39.58 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              6.41               0.20 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            215.44             345.96 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             61.05              47.38 
[1] "6.4 - 215.4 (61.0)" "0.2 - 346.0 (47.4)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GN-A26D 
"12P GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GN-A26D 
"12P GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GN-A26D 
"12P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      4   11
  12P GAIN WILD-TYPE   58   85
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE                4                 58
  MALE                 11                 85
                    vv
clus                  M0  M1 M1A M1B M1C
  12P GAIN MUTATED    12   1   1   0   0
  12P GAIN WILD-TYPE 122   1   1   1   2
D19V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  12P GAIN MUTATED    6  0   2   1  0   1   1   1  2  0
  12P GAIN WILD-TYPE 81  2   5  12  1   2   9   4 10  2
D19V5, multiclass
D19V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12P GAIN MUTATED         2        1        1        0         0         0
  12P GAIN WILD-TYPE      15        8       12       18         8         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  12P GAIN MUTATED           1         1          2          3          1
  12P GAIN WILD-TYPE         7         6          4         14         17
                    vv
clus                 STAGE IV
  12P GAIN MUTATED          2
  12P GAIN WILD-TYPE        3
D19V7, multiclass

Clustering(20) Variable = 12q gain mutation analysis
D20V1, survival
                    sevent
clus2                 0  1
  12Q GAIN MUTATED    2  3
  12Q GAIN WILD-TYPE 79 70
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                149 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 3                 70 
$`12Q GAIN MUTATED`
TCGA-DA-A3F5 TCGA-EE-A2GB TCGA-ER-A19L TCGA-FS-A1ZK TCGA-GN-A26A 
      215.44        47.54       131.08        23.93        32.48 

$`12Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       28.60        10.49        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       39.25        58.75        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41        61.05        44.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       33.21        80.48       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM 
       40.27        15.45         9.70        32.71        47.38       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       74.73        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       27.06        27.02        77.79        50.14        12.43        49.45 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        0.20        22.98        47.54        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        39.58 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             23.93               0.20 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            215.44             345.96 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             47.54              47.54 
[1] "23.9 - 215.4 (47.5)" "0.2 - 346.0 (47.5)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GN-A26D 
"12Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GN-A26D 
"12Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GN-A26D 
"12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      1    4
  12Q GAIN WILD-TYPE   61   92
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                1                 61
  MALE                  4                 92
                    vv
clus                  M0  M1 M1A M1B M1C
  12Q GAIN MUTATED     4   0   0   0   0
  12Q GAIN WILD-TYPE 130   2   2   1   2
D20V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  12Q GAIN MUTATED    1  0   2   0  0   0   0   0  1  0
  12Q GAIN WILD-TYPE 86  2   5  13  1   3  10   5 11  2
D20V5, multiclass
D20V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12Q GAIN MUTATED         0        0        0        1         0         0
  12Q GAIN WILD-TYPE      17        9       13       17         8         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  12Q GAIN MUTATED           0         0          2          0          1
  12Q GAIN WILD-TYPE         8         7          4         17         17
                    vv
clus                 STAGE IV
  12Q GAIN MUTATED          0
  12Q GAIN WILD-TYPE        5
D20V7, multiclass

Clustering(21) Variable = 13q gain mutation analysis
D21V1, survival
                    sevent
clus2                 0  1
  13Q GAIN MUTATED   11 16
  13Q GAIN WILD-TYPE 70 57
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                27                127 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                16                 57 
$`13Q GAIN MUTATED`
TCGA-DA-A1I7 TCGA-DA-A3F3 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29P TCGA-EE-A29R 
       61.18        10.49       168.26        63.32        56.42        14.47 
TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A3AF 
       39.25        47.54        75.48        90.94        13.87        13.81 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1Z0 
      131.08        61.05        44.05        33.21       216.92       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZE TCGA-FS-A1ZT TCGA-FS-A1ZY TCGA-FS-A4F2 
       20.91         7.76        40.27        53.16        27.06        50.14 
TCGA-FW-A3TU TCGA-GN-A267 TCGA-GN-A268 
       47.54        64.41        62.76 

$`13Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
      107.34        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       26.86         4.93       109.64        78.87        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q 
       39.62        32.19         2.56        44.35        18.58        37.35 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       24.43        58.75        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GO TCGA-EE-A2GR 
       22.55        89.33        54.71        55.00       101.95        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AG 
        4.24       122.73        25.84         3.68        26.73        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A1A1 TCGA-ER-A3ET 
      138.77        12.59        26.37         6.41        79.99        80.32 
TCGA-FR-A3YN TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZB 
       80.48        48.59       228.59        28.08        27.68        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       53.52        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZW 
      101.26        74.73        11.41       148.77        26.56        49.48 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       27.02        77.79        12.43        49.45         0.20        22.98 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26A 
       76.41       120.46       117.93        84.72        10.09        32.48 
TCGA-GN-A26D 
       39.58 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              7.76               0.20 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            216.92             345.96 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             50.14              47.38 
[1] "7.8 - 216.9 (50.1)" "0.2 - 346.0 (47.4)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"13Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"13Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"13Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      9   18
  13Q GAIN WILD-TYPE   53   78
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                9                 53
  MALE                 18                 78
                    vv
clus                  M0  M1 M1A M1B M1C
  13Q GAIN MUTATED    21   0   1   0   0
  13Q GAIN WILD-TYPE 113   2   1   1   2
D21V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  13Q GAIN MUTATED   13  0   4   3  0   0   2   0  0  0
  13Q GAIN WILD-TYPE 74  2   3  10  1   3   8   5 12  2
D21V5, multiclass
D21V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  13Q GAIN MUTATED         1        1        3        0         1         2
  13Q GAIN WILD-TYPE      16        8       10       18         7         7
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  13Q GAIN MUTATED           4         1          3          3          2
  13Q GAIN WILD-TYPE         4         6          3         14         16
                    vv
clus                 STAGE IV
  13Q GAIN MUTATED          1
  13Q GAIN WILD-TYPE        4
D21V7, multiclass

Clustering(22) Variable = 14q gain mutation analysis
D22V1, survival
                    sevent
clus2                 0  1
  14Q GAIN MUTATED    6  7
  14Q GAIN WILD-TYPE 75 66
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                13                141 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 7                 66 
$`14Q GAIN MUTATED`
TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-EE-A20H TCGA-EE-A29L TCGA-EE-A2GH TCGA-EE-A2GM 
      176.55        61.18       168.26         2.56       182.01        75.48 
TCGA-EE-A2GO TCGA-EE-A3AE TCGA-ER-A19L TCGA-ER-A19M TCGA-FS-A1ZP TCGA-FS-A1ZY 
      101.95        26.73       131.08        61.05        74.73        27.06 
TCGA-GN-A26D 
       39.58 

$`14Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 
       36.03       117.17        20.38       194.83        35.93       107.34 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C 
       26.86         4.93       109.64        78.87        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       13.97        39.62        32.19        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
       43.23       314.53       135.91        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       55.00        90.94        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
       25.84         3.68        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
       26.37         6.41        44.05        79.99        80.32        33.21 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.48       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZZ 
       11.41       148.77        53.16        26.56        49.48        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       47.54        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       64.41        62.76        32.48 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              2.56               0.20 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            182.01             345.96 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             74.73              47.38 
[1] "2.6 - 182.0 (74.7)" "0.2 - 346.0 (47.4)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "14Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "14Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "14Q GAIN MUTATED" 
[1] "hr=" "1.2"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      4    9
  14Q GAIN WILD-TYPE   58   87
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE                4                 58
  MALE                  9                 87
                    vv
clus                  M0  M1 M1A M1B M1C
  14Q GAIN MUTATED    11   0   0   0   0
  14Q GAIN WILD-TYPE 123   2   2   1   2
D22V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  14Q GAIN MUTATED    9  0   0   0  0   0   2   0  1  0
  14Q GAIN WILD-TYPE 78  2   7  13  1   3   8   5 11  2
D22V5, multiclass
D22V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  14Q GAIN MUTATED         2        1        1        2         0         1
  14Q GAIN WILD-TYPE      15        8       12       16         8         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  14Q GAIN MUTATED           2         0          0          1          2
  14Q GAIN WILD-TYPE         6         7          6         16         16
                    vv
clus                 STAGE IV
  14Q GAIN MUTATED          0
  14Q GAIN WILD-TYPE        5
D22V7, multiclass

Clustering(23) Variable = 15q gain mutation analysis
D23V1, survival
                    sevent
clus2                 0  1
  15Q GAIN MUTATED    9 11
  15Q GAIN WILD-TYPE 72 62
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                20                134 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                11                 62 
$`15Q GAIN MUTATED`
TCGA-D3-A3MV TCGA-D9-A149 TCGA-DA-A1HW TCGA-DA-A1I7 TCGA-DA-A3F5 TCGA-EE-A183 
       21.47        49.74        36.03        61.18       215.44        26.86 
TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A2A1 TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M6 
      168.26        13.97        78.94        75.48       101.95       129.24 
TCGA-EE-A2MN TCGA-EE-A3AE TCGA-ER-A19M TCGA-FS-A1Z3 TCGA-FS-A1ZD TCGA-FS-A1ZY 
       47.54        26.73        61.05        20.91        53.52        27.06 
TCGA-FS-A4F2 TCGA-GN-A264 
       50.14       117.93 

$`15Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A1JW 
      121.22        58.03        71.24         9.30       148.31         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 
        6.38        11.34         3.22        48.89       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
      194.83       176.55        35.93       107.34        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X 
       23.44        68.09        28.60        10.49        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        8.65        33.73        14.70         4.93       109.64        78.87 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       63.32        47.84        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       25.87        17.92        46.82        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR 
       89.33        54.71        55.00        90.94        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 
       55.59        19.56        67.13        21.67        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       144.76       203.01       167.87       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
       25.84         3.68        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       33.21        80.48       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF 
       28.08         7.76        27.68        48.85        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZZ 
       11.41       148.77        53.16        26.56        49.48        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       77.79        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       76.41       120.46        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             13.97               0.20 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            215.44             345.96 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             51.83              47.33 
[1] "14.0 - 215.4 (51.8)" "0.2 - 346.0 (47.3)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"15Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"15Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      8   12
  15Q GAIN WILD-TYPE   54   84
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                8                 54
  MALE                 12                 84
                    vv
clus                  M0  M1 M1A M1B M1C
  15Q GAIN MUTATED    18   0   0   0   0
  15Q GAIN WILD-TYPE 116   2   2   1   2
D23V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  15Q GAIN MUTATED   12  0   0   3  0   1   1   0  1  0
  15Q GAIN WILD-TYPE 75  2   7  10  1   2   9   5 11  2
D23V5, multiclass
D23V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  15Q GAIN MUTATED         4        1        2        1         1         1
  15Q GAIN WILD-TYPE      13        8       11       17         7         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  15Q GAIN MUTATED           2         0          0          3          2
  15Q GAIN WILD-TYPE         6         7          6         14         16
                    vv
clus                 STAGE IV
  15Q GAIN MUTATED          0
  15Q GAIN WILD-TYPE        5
D23V7, multiclass

Clustering(24) Variable = 16p gain mutation analysis
D24V1, survival
                    sevent
clus2                 0  1
  16P GAIN MUTATED    6  5
  16P GAIN WILD-TYPE 75 68
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                11                143 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 5                 68 
$`16P GAIN MUTATED`
TCGA-EE-A20H TCGA-EE-A29R TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GM TCGA-EE-A2GN 
      168.26        14.47        39.25        47.54        75.48        90.94 
TCGA-EE-A2M6 TCGA-EE-A3AE TCGA-ER-A19D TCGA-ER-A19M TCGA-FS-A1ZY 
      129.24        26.73        12.59        61.05        27.06 

$`16P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       33.73        14.70        26.86         4.93       109.64        78.87 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T 
       44.35        18.58        56.42        37.35        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
       25.87        17.92        46.82        78.94        24.43        58.75 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       54.71        55.00       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13        21.67        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F 
       25.84         3.68        13.81        23.47       138.77        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
        6.41       131.08        44.05        79.99        80.32        33.21 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.48       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       74.73        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.02        77.79        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       22.98        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             12.59               0.20 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            168.26             345.96 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             47.54              47.54 
[1] "12.6 - 168.3 (47.5)" "0.2 - 346.0 (47.5)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"16P GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"16P GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"16P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      4    7
  16P GAIN WILD-TYPE   58   89
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                4                 58
  MALE                  7                 89
                    vv
clus                  M0  M1 M1A M1B M1C
  16P GAIN MUTATED    11   0   0   0   0
  16P GAIN WILD-TYPE 123   2   2   1   2
D24V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  16P GAIN MUTATED    9  0   1   1  0   0   0   0  0  0
  16P GAIN WILD-TYPE 78  2   6  12  1   3  10   5 12  2
D24V5, multiclass
D24V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16P GAIN MUTATED         2        1        3        0         1         1
  16P GAIN WILD-TYPE      15        8       10       18         7         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  16P GAIN MUTATED           1         0          1          0          1
  16P GAIN WILD-TYPE         7         7          5         17         17
                    vv
clus                 STAGE IV
  16P GAIN MUTATED          0
  16P GAIN WILD-TYPE        5
D24V7, multiclass

Clustering(25) Variable = 16q gain mutation analysis
D25V1, survival
                    sevent
clus2                 0  1
  16Q GAIN MUTATED    5  4
  16Q GAIN WILD-TYPE 76 69
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 9                145 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 4                 69 
$`16Q GAIN MUTATED`
TCGA-EE-A20H TCGA-EE-A29R TCGA-EE-A2GB TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2M6 
      168.26        14.47        47.54        75.48        90.94       129.24 
TCGA-ER-A19D TCGA-ER-A19M TCGA-FS-A1ZY 
       12.59        61.05        27.06 

$`16Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       33.73        14.70        26.86         4.93       109.64        78.87 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T 
       44.35        18.58        56.42        37.35        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       89.33        54.71        55.00       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 
       55.59        19.56        67.13        21.67        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
      138.77        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       80.32        33.21        80.48       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
       26.56        49.48        27.02        77.79        50.14        12.43 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       49.45         0.20        22.98        47.54        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             12.59               0.20 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            168.26             345.96 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             61.05              47.54 
[1] "12.6 - 168.3 (61.0)" "0.2 - 346.0 (47.5)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"16Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"16Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"16Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      3    7
  16Q GAIN WILD-TYPE   59   89
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                3                 59
  MALE                  7                 89
                    vv
clus                  M0  M1 M1A M1B M1C
  16Q GAIN MUTATED    10   0   0   0   0
  16Q GAIN WILD-TYPE 124   2   2   1   2
D25V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  16Q GAIN MUTATED    7  0   1   2  0   0   0   0  0  0
  16Q GAIN WILD-TYPE 80  2   6  11  1   3  10   5 12  2
D25V5, multiclass
D25V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16Q GAIN MUTATED         2        0        2        0         1         1
  16Q GAIN WILD-TYPE      15        9       11       18         7         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  16Q GAIN MUTATED           1         0          1          1          1
  16Q GAIN WILD-TYPE         7         7          5         16         17
                    vv
clus                 STAGE IV
  16Q GAIN MUTATED          0
  16Q GAIN WILD-TYPE        5
D25V7, multiclass

Clustering(26) Variable = 17p gain mutation analysis
D26V1, survival
                    sevent
clus2                 0  1
  17P GAIN MUTATED    9  3
  17P GAIN WILD-TYPE 72 70
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                12                142 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 3                 70 
$`17P GAIN MUTATED`
TCGA-D3-A3MV TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P 
       21.47        61.18        65.92        78.87        18.58        56.42 
TCGA-EE-A2A6 TCGA-EE-A2GM TCGA-EE-A3AG TCGA-ER-A3PL TCGA-FS-A1ZD TCGA-GN-A26D 
       58.75        75.48        23.47        33.21        53.52        39.58 

$`17P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       53.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
        4.93       109.64       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29R 
       39.62        32.19         2.56        44.35        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       24.43        39.25        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN 
      182.01        22.55        89.33        54.71        55.00        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
        3.68        26.73        13.81       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        6.41       131.08        61.05        44.05        79.99        80.32 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.48       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF 
       28.08         7.76        27.68        48.85        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.02        77.79        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       22.98        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       10.09        64.41        62.76        32.48 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             18.58               0.20 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             78.87             345.96 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             54.97              47.54 
[1] "18.6 - 78.9 (55.0)" "0.2 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "17P GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "17P GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "17P GAIN MUTATED" 
[1] "hr=" "1.7"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      5    7
  17P GAIN WILD-TYPE   57   89
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                5                 57
  MALE                  7                 89
                    vv
clus                  M0  M1 M1A M1B M1C
  17P GAIN MUTATED     9   0   1   0   0
  17P GAIN WILD-TYPE 125   2   1   1   2
D26V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  17P GAIN MUTATED    8  0   0   1  0   1   1   0  0  0
  17P GAIN WILD-TYPE 79  2   7  12  1   2   9   5 12  2
D26V5, multiclass
D26V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17P GAIN MUTATED         0        1        0        1         1         0
  17P GAIN WILD-TYPE      17        8       13       17         7         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  17P GAIN MUTATED           3         0          0          3          0
  17P GAIN WILD-TYPE         5         7          6         14         18
                    vv
clus                 STAGE IV
  17P GAIN MUTATED          1
  17P GAIN WILD-TYPE        4
D26V7, multiclass

Clustering(27) Variable = 17q gain mutation analysis
D27V1, survival
                    sevent
clus2                 0  1
  17Q GAIN MUTATED   11  9
  17Q GAIN WILD-TYPE 70 64
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                20                134 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 9                 64 
$`17Q GAIN MUTATED`
TCGA-D3-A3MV TCGA-D9-A1JW TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EE-A181 
       21.47         2.70        61.18        65.92        68.09        33.73 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A2A6 
        4.93        78.87         2.56        18.58        56.42        58.75 
TCGA-EE-A2GM TCGA-EE-A3AC TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1ZD TCGA-FS-A1ZU 
       75.48        25.84        33.21        80.48        53.52        26.56 
TCGA-GN-A268 TCGA-GN-A26D 
       62.76        39.58 

$`17Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        6.38        11.34         3.22        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93       107.34        53.92 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       23.44        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
        8.65        14.70        26.86       109.64       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29Q 
       47.84        13.97        39.62        32.19        44.35        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        24.43        39.25        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF 
       28.08         7.76        27.68        48.85        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        53.16        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       47.54        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A 
       64.41        32.48 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              2.56               0.20 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             80.48             345.96 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             46.55              47.54 
[1] "2.6 - 80.5 (46.5)"  "0.2 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "17Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "17Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "17Q GAIN MUTATED" 
[1] "hr=" "1.3"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      9   11
  17Q GAIN WILD-TYPE   53   85
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                9                 53
  MALE                 11                 85
                    vv
clus                  M0  M1 M1A M1B M1C
  17Q GAIN MUTATED    17   0   1   0   0
  17Q GAIN WILD-TYPE 117   2   1   1   2
D27V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  17Q GAIN MUTATED   12  0   0   1  0   2   1   1  2  0
  17Q GAIN WILD-TYPE 75  2   7  12  1   1   9   4 10  2
D27V5, multiclass
D27V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17Q GAIN MUTATED         0        1        1        2         1         1
  17Q GAIN WILD-TYPE      17        8       12       16         7         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  17Q GAIN MUTATED           4         0          0          4          2
  17Q GAIN WILD-TYPE         4         7          6         13         16
                    vv
clus                 STAGE IV
  17Q GAIN MUTATED          1
  17Q GAIN WILD-TYPE        4
D27V7, multiclass

Clustering(28) Variable = 18p gain mutation analysis
D28V1, survival
                    sevent
clus2                 0  1
  18P GAIN MUTATED    9  9
  18P GAIN WILD-TYPE 72 64
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                136 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 9                 64 
$`18P GAIN MUTATED`
TCGA-D3-A3CC TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29L 
       71.24        20.38       194.83        33.73        39.62         2.56 
TCGA-EE-A29P TCGA-EE-A2GB TCGA-EE-A2GH TCGA-EE-A2GM TCGA-EE-A2MP TCGA-FS-A1ZJ 
       56.42        47.54       182.01        75.48       248.61        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZU TCGA-FS-A4F2 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       23.93        26.56        50.14        64.41        32.48        39.58 

$`18P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      117.17       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       32.19        44.35        18.58        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI 
       39.25        58.75        43.23       314.53       135.91        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       89.33        54.71        55.00        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
       61.05        44.05        79.99        80.32        33.21        80.48 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
        7.76        27.68        48.85        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
        9.70        32.71       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 
       53.16        49.48        27.06        27.02        77.79        12.43 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       49.45         0.20        22.98        47.54        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 
      117.93        84.72        10.09        62.76 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              2.56               0.20 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            248.61             345.96 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             47.46              47.69 
[1] "2.6 - 248.6 (47.5)" "0.2 - 346.0 (47.7)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GN-A26D 
  "18P GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GN-A26D 
  "18P GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GN-A26D 
  "18P GAIN MUTATED" 
[1] "hr=" "1.1"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     10    9
  18P GAIN WILD-TYPE   52   87
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               10                 52
  MALE                  9                 87
                    vv
clus                  M0  M1 M1A M1B M1C
  18P GAIN MUTATED    16   0   1   0   0
  18P GAIN WILD-TYPE 118   2   1   1   2
D28V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  18P GAIN MUTATED   11  0   3   1  0   0   0   0  3  0
  18P GAIN WILD-TYPE 76  2   4  12  1   3  10   5  9  2
D28V5, multiclass
D28V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18P GAIN MUTATED         3        0        0        2         0         0
  18P GAIN WILD-TYPE      14        9       13       16         8         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  18P GAIN MUTATED           6         0          3          1          3
  18P GAIN WILD-TYPE         2         7          3         16         15
                    vv
clus                 STAGE IV
  18P GAIN MUTATED          0
  18P GAIN WILD-TYPE        5
D28V7, multiclass

Clustering(29) Variable = 18q gain mutation analysis
D29V1, survival
                    sevent
clus2                 0  1
  18Q GAIN MUTATED    5  5
  18Q GAIN WILD-TYPE 76 68
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                10                144 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                 68 
$`18Q GAIN MUTATED`
TCGA-D3-A3CC TCGA-DA-A1I1 TCGA-EE-A29L TCGA-EE-A2GH TCGA-EE-A2GM TCGA-FS-A1ZU 
       71.24       194.83         2.56       182.01        75.48        26.56 
TCGA-FS-A4F2 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       50.14        64.41        32.48        39.58 

$`18Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        39.62        32.19        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ 
       47.54        43.23       314.53       135.91        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       54.71        55.00        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
       61.05        44.05        79.99        80.32        33.21        80.48 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
        7.76        27.68        48.85        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        53.16        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       77.79        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 
       76.41       120.46       117.93        84.72        10.09        62.76 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              2.56               0.20 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            194.83             345.96 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            57.275             47.540 
[1] "2.6 - 194.8 (57.3)" "0.2 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "18Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "18Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "18Q GAIN MUTATED" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      6    5
  18Q GAIN WILD-TYPE   56   91
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                6                 56
  MALE                  5                 91
                    vv
clus                  M0  M1 M1A M1B M1C
  18Q GAIN MUTATED     9   0   0   0   0
  18Q GAIN WILD-TYPE 125   2   2   1   2
D29V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  18Q GAIN MUTATED    6  0   2   0  0   0   0   0  2  0
  18Q GAIN WILD-TYPE 81  2   5  13  1   3  10   5 10  2
D29V5, multiclass
D29V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18Q GAIN MUTATED         1        0        0        0         0         0
  18Q GAIN WILD-TYPE      16        9       13       18         8         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  18Q GAIN MUTATED           5         0          2          0          2
  18Q GAIN WILD-TYPE         3         7          4         17         16
                    vv
clus                 STAGE IV
  18Q GAIN MUTATED          0
  18Q GAIN WILD-TYPE        5
D29V7, multiclass

Clustering(30) Variable = 19p gain mutation analysis
D30V1, survival
                    sevent
clus2                 0  1
  19P GAIN MUTATED    3  6
  19P GAIN WILD-TYPE 78 67
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 9                145 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                 67 
$`19P GAIN MUTATED`
TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A2GS TCGA-EE-A2M6 TCGA-EE-A2MM TCGA-FS-A1Z3 
        2.56        14.47        55.59       129.24       167.87        20.91 
TCGA-FS-A1ZD TCGA-FS-A1ZU TCGA-FS-A1ZY 
       53.52        26.56        27.06 

$`19P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       33.73        14.70        26.86         4.93       109.64        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
      168.26        63.32        47.84        13.97        39.62        32.19 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T 
       44.35        18.58        56.42        37.35        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
      101.95        13.87        14.30        19.56        67.13        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN 
       16.96       204.62        96.23       144.76       203.01        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
       61.05        44.05        79.99        80.32        33.21        80.48 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
      216.92        48.59       228.59       202.62        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       27.68        48.85        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38        23.93       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
       53.16        49.48        27.02        77.79        50.14        12.43 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       49.45         0.20        22.98        47.54        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              2.56               0.20 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            167.87             345.96 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             27.06              47.54 
[1] "2.6 - 167.9 (27.1)" "0.2 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"19P GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"19P GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"19P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      5    5
  19P GAIN WILD-TYPE   57   91
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                5                 57
  MALE                  5                 91
                    vv
clus                  M0  M1 M1A M1B M1C
  19P GAIN MUTATED     8   0   0   0   0
  19P GAIN WILD-TYPE 126   2   2   1   2
D30V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  19P GAIN MUTATED    6  0   0   1  0   0   0   0  1  0
  19P GAIN WILD-TYPE 81  2   7  12  1   3  10   5 11  2
D30V5, multiclass
D30V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19P GAIN MUTATED         2        0        1        0         1         1
  19P GAIN WILD-TYPE      15        9       12       18         7         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  19P GAIN MUTATED           1         0          0          0          2
  19P GAIN WILD-TYPE         7         7          6         17         16
                    vv
clus                 STAGE IV
  19P GAIN MUTATED          0
  19P GAIN WILD-TYPE        5
D30V7, multiclass

Clustering(31) Variable = 19q gain mutation analysis
D31V1, survival
                    sevent
clus2                 0  1
  19Q GAIN MUTATED    6  5
  19Q GAIN WILD-TYPE 75 68
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                11                143 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 5                 68 
$`19Q GAIN MUTATED`
TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2GD TCGA-EE-A2GS TCGA-EE-A2M6 
        2.56        14.47       345.96       314.53        55.59       129.24 
TCGA-ER-A3ET TCGA-FS-A1Z3 TCGA-FS-A1ZD TCGA-FS-A1ZU TCGA-FS-A1ZY 
       80.32        20.91        53.52        26.56        27.06 

$`19Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       33.73        14.70        26.86         4.93       109.64        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
      168.26        63.32        47.84        13.97        39.62        32.19 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V 
       44.35        18.58        56.42        37.35        55.89        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       47.54        43.23       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 
       14.30        19.56        67.13        21.67        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
      138.77        12.59        26.37         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
       44.05        79.99        33.21        80.48       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      228.59       202.62        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW 
      101.26        74.73        11.41       148.77        53.16        49.48 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.02        77.79        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       22.98        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              2.56               0.20 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            345.96             248.61 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             53.52              47.54 
[1] "2.6 - 346.0 (53.5)" "0.2 - 248.6 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"19Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"19Q GAIN WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
"19Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      7    5
  19Q GAIN WILD-TYPE   55   91
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                7                 55
  MALE                  5                 91
                    vv
clus                  M0  M1 M1A M1B M1C
  19Q GAIN MUTATED    10   0   0   0   0
  19Q GAIN WILD-TYPE 124   2   2   1   2
D31V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  19Q GAIN MUTATED    6  0   1   1  0   0   0   0  1  1
  19Q GAIN WILD-TYPE 81  2   6  12  1   3  10   5 11  1
D31V5, multiclass
D31V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19Q GAIN MUTATED         1        0        1        0         1         2
  19Q GAIN WILD-TYPE      16        9       12       18         7         7
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  19Q GAIN MUTATED           1         0          1          0          2
  19Q GAIN WILD-TYPE         7         7          5         17         16
                    vv
clus                 STAGE IV
  19Q GAIN MUTATED          0
  19Q GAIN WILD-TYPE        5
D31V7, multiclass

Clustering(32) Variable = 20p gain mutation analysis
D32V1, survival
                    sevent
clus2                 0  1
  20P GAIN MUTATED   25 22
  20P GAIN WILD-TYPE 56 51
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                47                107 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                22                 51 
$`20P GAIN MUTATED`
TCGA-D3-A3MV TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A3F5 
       21.47         6.38        20.38       176.55        61.18       215.44 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29R TCGA-EE-A2A1 TCGA-EE-A2A5 
      109.64       168.26        63.32        14.47        78.94        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GM TCGA-EE-A2GN 
       58.75        47.54       182.01        22.55        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MH 
      101.95        13.87        67.13        21.67       129.24        16.96 
TCGA-EE-A2MP TCGA-EE-A2MU TCGA-EE-A3AC TCGA-EE-A3AE TCGA-ER-A19J TCGA-ER-A19L 
      248.61        53.26        25.84        26.73         6.41       131.08 
TCGA-ER-A19M TCGA-FR-A3YN TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZG 
       61.05        80.48         7.76        27.68        53.52         9.70 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZY 
       47.38        23.93       101.26       148.77        26.56        27.06 
TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A26A TCGA-GN-A26D 
       50.14         0.20       117.93        32.48        39.58 

$`20P GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        2.70        11.34         3.22        48.89        36.03       117.17 
TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
      194.83        35.93       107.34        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       68.09        28.60        10.49        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C 
       33.73        14.70        26.86         4.93        78.87        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GJ 
       46.82        24.43        43.23       314.53       135.91        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M7 
       54.71        55.00        14.30        55.59        19.56        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI 
       19.76        61.51        47.28       103.27       103.17       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ 
       96.23       144.76       203.01       167.87        47.54        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD 
      103.56       136.44        41.59         4.24       122.73         3.68 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19N 
       13.81        23.47       138.77        12.59        26.37        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       79.99        80.32        33.21       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZF 
      202.62        20.91        28.08        48.85        40.27        15.45 
TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZZ 
       32.71        74.73        11.41        53.16        49.48        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       77.79        12.43        49.45        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46        84.72        10.09        64.41        62.76 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.20               2.56 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            248.61             345.96 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             50.14              47.54 
[1] "0.2 - 248.6 (50.1)" "2.6 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GN-A26D 
  "20P GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GN-A26D 
  "20P GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GN-A26D 
  "20P GAIN MUTATED" 
[1] "hr=" "1"  
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     17   31
  20P GAIN WILD-TYPE   45   65
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               17                 45
  MALE                 31                 65
                    vv
clus                 M0 M1 M1A M1B M1C
  20P GAIN MUTATED   40  2   1   0   0
  20P GAIN WILD-TYPE 94  0   1   1   2
D32V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  20P GAIN MUTATED   28  0   4   2  0   1   3   2  3  1
  20P GAIN WILD-TYPE 59  2   3  11  1   2   7   3  9  1
D32V5, multiclass
D32V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20P GAIN MUTATED         6        5        4        5         2         1
  20P GAIN WILD-TYPE      11        4        9       13         6         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  20P GAIN MUTATED           4         1          3          4          6
  20P GAIN WILD-TYPE         4         6          3         13         12
                    vv
clus                 STAGE IV
  20P GAIN MUTATED          2
  20P GAIN WILD-TYPE        3
D32V7, multiclass

Clustering(33) Variable = 20q gain mutation analysis
D33V1, survival
                    sevent
clus2                 0  1
  20Q GAIN MUTATED   34 24
  20Q GAIN WILD-TYPE 47 49
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                58                 96 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                24                 49 
$`20Q GAIN MUTATED`
TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1I0 TCGA-DA-A1I2 
       21.47       148.31         6.38        48.89        20.38       176.55 
TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A3F5 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
       61.18        65.92       215.44       109.64       168.26        63.32 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A2A1 TCGA-EE-A2A5 
       39.62         2.56        56.42        14.47        78.94        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GM TCGA-EE-A2GN 
       58.75        47.54       182.01        22.55        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MH 
      101.95        13.87        67.13        21.67       129.24        16.96 
TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
      248.61       136.44        53.26        25.84         3.68        26.73 
TCGA-EE-A3AG TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A3PL TCGA-FR-A3YN 
       23.47         6.41       131.08        61.05        33.21        80.48 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
        7.76        27.68        53.52         9.70        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A4F2 
      101.26       148.77        53.16        26.56        27.06        50.14 
TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A26A TCGA-GN-A26D 
        0.20       117.93        32.48        39.58 

$`20Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        58.03        71.24         9.30        49.74         2.70 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I4 
       11.34         3.22        36.03       117.17       194.83        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
      107.34        53.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29M 
        4.93        78.87        47.84        13.97        32.19        44.35 
TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       18.58        37.35        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GJ 
       46.82        24.43        43.23       314.53       135.91        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M7 
       54.71        55.00        14.30        55.59        19.56        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI 
       19.76        61.51        47.28       103.27       103.17       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ 
       96.23       144.76       203.01       167.87        47.54        43.23 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AF TCGA-EE-A3AH 
      103.56        41.59         4.24       122.73        13.81       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
       12.59        26.37        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZB 
       48.59       228.59       202.62        20.91        28.08        48.85 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZW 
       40.27        15.45        32.71        74.73        11.41        49.48 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU 
       27.02        77.79        12.43        49.45        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       76.41       120.46        84.72        10.09        64.41        62.76 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               0.2                2.7 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            248.61             345.96 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            49.515             47.410 
[1] "0.2 - 248.6 (49.5)" "2.7 - 346.0 (47.4)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "20Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "20Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "20Q GAIN MUTATED" 
[1] "hr=" "1.2"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     20   39
  20Q GAIN WILD-TYPE   42   57
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               20                 42
  MALE                 39                 57
                    vv
clus                 M0 M1 M1A M1B M1C
  20Q GAIN MUTATED   47  2   2   1   0
  20Q GAIN WILD-TYPE 87  0   0   0   2
D33V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  20Q GAIN MUTATED   31  0   4   5  0   1   4   2  5  1
  20Q GAIN WILD-TYPE 56  2   3   8  1   2   6   3  7  1
D33V5, multiclass
D33V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20Q GAIN MUTATED         6        5        4        6         2         1
  20Q GAIN WILD-TYPE      11        4        9       12         6         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  20Q GAIN MUTATED           5         2          3          7          7
  20Q GAIN WILD-TYPE         3         5          3         10         11
                    vv
clus                 STAGE IV
  20Q GAIN MUTATED          3
  20Q GAIN WILD-TYPE        2
D33V7, multiclass

Clustering(34) Variable = 21q gain mutation analysis
D34V1, survival
                    sevent
clus2                 0  1
  21Q GAIN MUTATED   10 11
  21Q GAIN WILD-TYPE 71 62
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                21                133 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                11                 62 
$`21Q GAIN MUTATED`
TCGA-D3-A3MV TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A2A0 
       21.47       168.26        63.32         2.56        14.47        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2MQ TCGA-ER-A19D 
       78.94        39.25        75.48        90.94        43.23        12.59 
TCGA-ER-A19L TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1ZD TCGA-FS-A1ZJ TCGA-FS-A1ZS 
      131.08        33.21        80.48        53.52        47.38       148.77 
TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A26D 
       50.14         0.20        39.58 

$`21Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
       14.70        26.86         4.93       109.64        78.87        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       13.97        39.62        32.19        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A2 
       37.35        55.89       345.96        25.87        17.92        24.43 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GO TCGA-EE-A2GP 
       22.55        89.33        54.71        55.00       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54       248.61       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N 
       23.47       138.77        26.37         6.41        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE 
       20.91        28.08         7.76        27.68        48.85        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        32.71        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41        53.16        26.56        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       77.79        12.43        49.45        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A 
       32.48 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
               0.2                2.7 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            168.26             345.96 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             47.38              47.54 
[1] "0.2 - 168.3 (47.4)" "2.7 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "21Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "21Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GN-A26D 
  "21Q GAIN MUTATED" 
[1] "hr=" "1.2"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     10   11
  21Q GAIN WILD-TYPE   52   85
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE               10                 52
  MALE                 11                 85
                    vv
clus                  M0  M1 M1A M1B M1C
  21Q GAIN MUTATED    17   1   1   0   0
  21Q GAIN WILD-TYPE 117   1   1   1   2
D34V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  21Q GAIN MUTATED   15  0   1   1  0   2   0   0  1  0
  21Q GAIN WILD-TYPE 72  2   6  12  1   1  10   5 11  2
D34V5, multiclass
D34V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  21Q GAIN MUTATED         2        0        4        1         3         0
  21Q GAIN WILD-TYPE      15        9        9       17         5         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  21Q GAIN MUTATED           3         0          2          1          2
  21Q GAIN WILD-TYPE         5         7          4         16         16
                    vv
clus                 STAGE IV
  21Q GAIN MUTATED          2
  21Q GAIN WILD-TYPE        3
D34V7, multiclass

Clustering(35) Variable = 22q gain mutation analysis
D35V1, survival
                    sevent
clus2                 0  1
  22Q GAIN MUTATED   25 18
  22Q GAIN WILD-TYPE 56 55
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                43                111 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                18                 55 
$`22Q GAIN MUTATED`
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-DA-A1HV TCGA-DA-A1I0 TCGA-DA-A1I1 
        9.30        21.47       148.31        48.89        20.38       194.83 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-EE-A20H 
       61.18        53.92        65.92        23.44       215.44       168.26 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A2GB TCGA-EE-A2GH 
        2.56        44.35        18.58        14.47        47.54       182.01 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2M6 TCGA-EE-A2MJ TCGA-EE-A2MQ 
       75.48        90.94       101.95       129.24        96.23        43.23 
TCGA-EE-A2MS TCGA-EE-A3AE TCGA-EE-A3AG TCGA-ER-A19M TCGA-ER-A3ET TCGA-FR-A3YN 
      136.44        26.73        23.47        61.05        80.32        80.48 
TCGA-FS-A1YY TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZM TCGA-FS-A1ZT TCGA-FS-A1ZU 
      228.59        27.68        53.52       101.26        53.16        26.56 
TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A 
       50.14         0.20       117.93        84.72        64.41        32.48 
TCGA-GN-A26D 
       39.58 

$`22Q GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX 
      121.22        58.03        71.24        49.74         2.70         6.38 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I4 
       11.34         3.22        36.03       117.17       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X 
      107.34        68.09        28.60        10.49        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       78.87        63.32        47.84        13.97        39.62        32.19 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC 
       46.82        78.94        24.43        39.25        58.75        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91        22.55        89.33        54.71        55.00 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      248.61       103.56        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       25.84         3.68        13.81       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        33.21       216.92 
TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB 
       48.59       202.62        20.91        28.08         7.76        48.85 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       74.73        11.41       148.77        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       77.79        12.43        49.45        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A268 
      120.46        10.09        62.76 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               0.2                2.7 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            228.59             345.96 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             53.92              44.05 
[1] "0.2 - 228.6 (53.9)" "2.7 - 346.0 (44.0)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "22Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "22Q GAIN MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GN-A26D 
  "22Q GAIN MUTATED" 
[1] "hr=" "1.4"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     19   24
  22Q GAIN WILD-TYPE   43   72
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               19                 43
  MALE                 24                 72
                    vv
clus                 M0 M1 M1A M1B M1C
  22Q GAIN MUTATED   36  1   1   1   0
  22Q GAIN WILD-TYPE 98  1   1   0   2
D35V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  22Q GAIN MUTATED   19  0   4   3  0   2   3   3  6  0
  22Q GAIN WILD-TYPE 68  2   3  10  1   1   7   2  6  2
D35V5, multiclass
D35V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  22Q GAIN MUTATED         3        1        3        3         3         0
  22Q GAIN WILD-TYPE      14        8       10       15         5         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  22Q GAIN MUTATED           4         3          5          5          7
  22Q GAIN WILD-TYPE         4         4          1         12         11
                    vv
clus                 STAGE IV
  22Q GAIN MUTATED          1
  22Q GAIN WILD-TYPE        4
D35V7, multiclass

Clustering(36) Variable = Xq gain mutation analysis
D36V1, survival
                   sevent
clus2                0  1
  XQ GAIN MUTATED    1  2
  XQ GAIN WILD-TYPE 80 71
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3               151 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                71 
$`XQ GAIN MUTATED`
TCGA-EE-A2MU TCGA-FS-A1ZK TCGA-GN-A264 
       53.26        23.93       117.93 

$`XQ GAIN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       33.73        14.70        26.86         4.93       109.64        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
      168.26        63.32        47.84        13.97        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB 
       43.23       103.56       136.44        41.59         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       12.59        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
       79.99        80.32        33.21        80.48       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       47.38       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       26.56        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       12.43        49.45         0.20        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            23.93              0.20 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           117.93            345.96 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            53.26             47.54 
[1] "23.9 - 117.9 (53.3)" "0.2 - 346.0 (47.5)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      0    3
  XQ GAIN WILD-TYPE   62   93
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               0                62
  MALE                 3                93
                   vv
clus                 M0  M1 M1A M1B M1C
  XQ GAIN MUTATED     2   0   0   0   0
  XQ GAIN WILD-TYPE 132   2   2   1   2
D36V4, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2               139 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A3AE        TCGA-EE-A3AH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1Z7        TCGA-FS-A1ZA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE        TCGA-FS-A1ZF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ        TCGA-FS-A1ZM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZP        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A4F0        TCGA-FS-A4F2        TCGA-FS-A4F9        TCGA-FS-A4FC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-FW-A3R5        TCGA-FW-A3TV        TCGA-GN-A261 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  XQ GAIN MUTATED    2  0   0   0  0   0   0   0  0  0
  XQ GAIN WILD-TYPE 85  2   7  13  1   3  10   5 12  2
D36V5, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2               140 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A3AE        TCGA-EE-A3AH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1Z7        TCGA-FS-A1ZA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE        TCGA-FS-A1ZF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ        TCGA-FS-A1ZM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZP        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A4F0        TCGA-FS-A4F2        TCGA-FS-A4F9        TCGA-FS-A4FC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-FW-A3R5        TCGA-FW-A3TV        TCGA-GN-A261 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
D36V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  XQ GAIN MUTATED         0        1        0        1         0         0
  XQ GAIN WILD-TYPE      17        8       13       17         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  XQ GAIN MUTATED           0         0          0          0          0
  XQ GAIN WILD-TYPE         8         7          6         17         18
                   vv
clus                STAGE IV
  XQ GAIN MUTATED          0
  XQ GAIN WILD-TYPE        5
D36V7, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2               133 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0        TCGA-EE-A2A1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6        TCGA-EE-A2GB 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE        TCGA-EE-A2GH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK        TCGA-EE-A2GL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO        TCGA-EE-A2GP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT        TCGA-EE-A2GU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19J 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A19M        TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ER-A3PL        TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1YY        TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR        TCGA-FS-A1ZS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2        TCGA-FS-A4F9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5        TCGA-FW-A3TV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GN-A26D 
"XQ GAIN WILD-TYPE" 

Clustering(37) Variable = 1p loss mutation analysis
D37V1, survival
                   sevent
clus2                0  1
  1P LOSS MUTATED    8  3
  1P LOSS WILD-TYPE 73 70
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               11               143 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                3                70 
$`1P LOSS MUTATED`
TCGA-D3-A3CC TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-EE-A20H TCGA-EE-A2GO TCGA-EE-A2GR 
       71.24       176.55        61.18       168.26       101.95        14.30 
TCGA-EE-A2MK TCGA-EE-A2MS TCGA-EE-A3AD TCGA-ER-A19L TCGA-GN-A26D 
      144.76       136.44         3.68       131.08        39.58 

$`1P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 
      117.17        20.38       194.83        35.93       107.34        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
        4.93       109.64        78.87        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GS 
       54.71        55.00        75.48        90.94        13.87        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
        6.41        61.05        44.05        79.99        80.32        33.21 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.48       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       74.73        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       27.06        27.02        77.79        50.14        12.43        49.45 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        0.20        22.98        47.54        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       84.72        10.09        64.41        62.76        32.48 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             3.68              0.20 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           176.55            345.96 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           101.95             47.38 
[1] "3.7 - 176.6 (102.0)" "0.2 - 346.0 (47.4)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
[1] "hr=" "2.5"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      5    7
  1P LOSS WILD-TYPE   57   89
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               5                57
  MALE                 7                89
                   vv
clus                 M0  M1 M1A M1B M1C
  1P LOSS MUTATED     9   0   0   0   0
  1P LOSS WILD-TYPE 125   2   2   1   2
D37V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  1P LOSS MUTATED    7  0   0   0  0   0   3   0  0  0
  1P LOSS WILD-TYPE 80  2   7  13  1   3   7   5 12  2
D37V5, multiclass
D37V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1P LOSS MUTATED         1        0        0        4         0         0
  1P LOSS WILD-TYPE      16        9       13       14         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  1P LOSS MUTATED           2         1          0          1          1
  1P LOSS WILD-TYPE         6         6          6         16         17
                   vv
clus                STAGE IV
  1P LOSS MUTATED          0
  1P LOSS WILD-TYPE        5
D37V7, multiclass

Clustering(38) Variable = 1q loss mutation analysis
D38V1, survival
                   sevent
clus2                0  1
  1Q LOSS MUTATED    2  4
  1Q LOSS WILD-TYPE 79 69
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                6               148 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                4                69 
$`1Q LOSS MUTATED`
TCGA-D3-A3CC TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-EE-A20H TCGA-EE-A29X 
       71.24       176.55        61.18        53.92       168.26        17.92 

$`1Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IA 
      117.17        20.38       194.83        35.93       107.34        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
      109.64        78.87        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 
       14.47        55.89       345.96        25.87        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
      138.77        12.59        26.37         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
       44.05        79.99        80.32        33.21        80.48       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       27.68        48.85        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
       32.71        47.38        23.93       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       47.54        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            17.92              0.20 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           176.55            345.96 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            66.21             47.46 
[1] "17.9 - 176.6 (66.2)" "0.2 - 346.0 (47.5)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D38V2, continuous
D38V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      3    3
  1Q LOSS WILD-TYPE   59   93
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               3                59
  MALE                 3                93
                   vv
clus                 M0  M1 M1A M1B M1C
  1Q LOSS MUTATED     6   0   0   0   0
  1Q LOSS WILD-TYPE 128   2   2   1   2
D38V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  1Q LOSS MUTATED    3  0   0   0  0   0   2   0  1  0
  1Q LOSS WILD-TYPE 84  2   7  13  1   3   8   5 11  2
D38V5, multiclass
D38V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1Q LOSS MUTATED         1        0        1        0         0         0
  1Q LOSS WILD-TYPE      16        9       12       18         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  1Q LOSS MUTATED           1         0          0          1          2
  1Q LOSS WILD-TYPE         7         7          6         16         16
                   vv
clus                STAGE IV
  1Q LOSS MUTATED          0
  1Q LOSS WILD-TYPE        5
D38V7, multiclass

Clustering(39) Variable = 2p loss mutation analysis
D39V1, survival
                   sevent
clus2                0  1
  2P LOSS MUTATED    9  5
  2P LOSS WILD-TYPE 72 68
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               14               140 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5                68 
$`2P LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D9-A3Z3 TCGA-DA-A1I2 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A2GC 
       58.03         3.22       176.55       109.64        78.87        43.23 
TCGA-EE-A2GR TCGA-EE-A2MK TCGA-EE-A2MS TCGA-EE-A3AD TCGA-FS-A1YW TCGA-FS-A1YY 
       14.30       144.76       136.44         3.68       216.92       228.59 
TCGA-GN-A264 TCGA-GN-A26D 
      117.93        39.58 

$`2P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        71.24         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        2.70         6.38        11.34        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       194.83        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        4.93       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT 
       75.48        90.94       101.95        13.87        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE 
       41.59        53.26         4.24       122.73        25.84        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
      131.08        61.05        44.05        79.99        80.32        33.21 
TCGA-FR-A3YN TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       80.48        48.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       27.68        48.85        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
       32.71        47.38        23.93       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       47.54        76.41       120.46        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A 
       62.76        32.48 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             3.22              0.20 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           228.59            345.96 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           94.255            47.460 
[1] "3.2 - 228.6 (94.3)" "0.2 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
[1] "hr=" "2.1"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      5    9
  2P LOSS WILD-TYPE   57   87
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               5                57
  MALE                 9                87
                   vv
clus                 M0  M1 M1A M1B M1C
  2P LOSS MUTATED    11   0   0   0   0
  2P LOSS WILD-TYPE 123   2   2   1   2
D39V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  2P LOSS MUTATED   10  0   0   1  0   0   1   0  0  0
  2P LOSS WILD-TYPE 77  2   7  12  1   3   9   5 12  2
D39V5, multiclass
D39V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2P LOSS MUTATED         0        0        2        5         1         1
  2P LOSS WILD-TYPE      17        9       11       13         7         8
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  2P LOSS MUTATED           1         0          0          1          1
  2P LOSS WILD-TYPE         7         7          6         16         17
                   vv
clus                STAGE IV
  2P LOSS MUTATED          0
  2P LOSS WILD-TYPE        5
D39V7, multiclass

Clustering(40) Variable = 2q loss mutation analysis
D40V1, survival
                   sevent
clus2                0  1
  2Q LOSS MUTATED    8  5
  2Q LOSS WILD-TYPE 73 68
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               13               141 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                5                68 
$`2Q LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D9-A148 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A2GC 
       58.03       148.31       109.64        78.87        13.97        43.23 
TCGA-EE-A2GR TCGA-EE-A2MK TCGA-EE-A2MS TCGA-EE-A3AF TCGA-FS-A1YW TCGA-FS-A1YY 
       14.30       144.76       136.44        13.81       216.92       228.59 
TCGA-GN-A26D 
       39.58 

$`2Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        71.24         9.30        21.47        49.74         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        6.38        11.34         3.22        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
       26.86         4.93       168.26        63.32        47.84        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT 
       75.48        90.94       101.95        13.87        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       26.73        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
      131.08        61.05        44.05        79.99        80.32        33.21 
TCGA-FR-A3YN TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       80.48        48.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       27.68        48.85        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
       32.71        47.38        23.93       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       47.54        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       64.41        62.76        32.48 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            13.81              0.20 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           228.59            345.96 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            78.87             47.54 
[1] "13.8 - 228.6 (78.9)" "0.2 - 346.0 (47.5)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
[1] "hr=" "1.9"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      6    7
  2Q LOSS WILD-TYPE   56   89
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               6                56
  MALE                 7                89
                   vv
clus                 M0  M1 M1A M1B M1C
  2Q LOSS MUTATED    10   0   0   1   0
  2Q LOSS WILD-TYPE 124   2   2   0   2
D40V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  2Q LOSS MUTATED   10  0   0   1  0   0   0   0  1  0
  2Q LOSS WILD-TYPE 77  2   7  12  1   3  10   5 11  2
D40V5, multiclass
D40V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2Q LOSS MUTATED         0        0        2        5         1         1
  2Q LOSS WILD-TYPE      17        9       11       13         7         8
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  2Q LOSS MUTATED           1         0          0          0          1
  2Q LOSS WILD-TYPE         7         7          6         17         17
                   vv
clus                STAGE IV
  2Q LOSS MUTATED          0
  2Q LOSS WILD-TYPE        5
D40V7, multiclass

Clustering(41) Variable = 3p loss mutation analysis
D41V1, survival
                   sevent
clus2                0  1
  3P LOSS MUTATED    6  4
  3P LOSS WILD-TYPE 75 69
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               10               144 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                4                69 
$`3P LOSS MUTATED`
TCGA-D3-A3C6 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-EE-A2M6 
       58.03        48.89        36.03       176.55        61.18       129.24 
TCGA-EE-A3AG TCGA-FS-A1YX TCGA-FS-A1ZM TCGA-GN-A262 
       23.47        48.59       101.26       120.46 

$`3P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        71.24         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        11.34         3.22       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
      194.83        35.93       107.34        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       68.09        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 
       55.59        19.56        67.13        21.67        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH 
      122.73        25.84         3.68        26.73        13.81       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       12.59        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY 
       79.99        80.32        33.21        80.48       216.92       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       23.93        74.73        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
       49.48        27.06        27.02        77.79        50.14        12.43 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A264 
       49.45         0.20        22.98        47.54        76.41       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            23.47              0.20 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           176.55            345.96 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           59.605            47.330 
[1] "23.5 - 176.6 (59.6)" "0.2 - 346.0 (47.3)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      5    6
  3P LOSS WILD-TYPE   57   90
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE               5                57
  MALE                 6                90
                   vv
clus                 M0  M1 M1A M1B M1C
  3P LOSS MUTATED     8   0   0   0   0
  3P LOSS WILD-TYPE 126   2   2   1   2
D41V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  3P LOSS MUTATED    3  0   0   1  0   0   3   1  0  0
  3P LOSS WILD-TYPE 84  2   7  12  1   3   7   4 12  2
D41V5, multiclass
D41V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3P LOSS MUTATED         2        0        1        0         0         0
  3P LOSS WILD-TYPE      15        9       12       18         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  3P LOSS MUTATED           0         1          0          3          1
  3P LOSS WILD-TYPE         8         6          6         14         17
                   vv
clus                STAGE IV
  3P LOSS MUTATED          0
  3P LOSS WILD-TYPE        5
D41V7, multiclass

Clustering(42) Variable = 3q loss mutation analysis
D42V1, survival
                   sevent
clus2                0  1
  3Q LOSS MUTATED    6  5
  3Q LOSS WILD-TYPE 75 68
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               11               143 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                5                68 
$`3Q LOSS MUTATED`
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-EE-A29H TCGA-EE-A2GJ 
       48.89        36.03       176.55        61.18        32.19        89.33 
TCGA-FS-A1YX TCGA-FS-A1ZM TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 
       48.59       101.26       120.46       117.93        62.76 

$`3Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HY 
       49.74         2.70         6.38        11.34         3.22       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
       20.38       194.83        35.93       107.34        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       39.62         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91       182.01        22.55        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
      138.77        12.59        26.37         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
       44.05        79.99        80.32        33.21        80.48       216.92 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       47.38        23.93        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       26.56        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       12.43        49.45         0.20        22.98        47.54        76.41 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        32.48        39.58 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            32.19              0.20 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           176.55            345.96 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            62.76             47.28 
[1] "32.2 - 176.6 (62.8)" "0.2 - 346.0 (47.3)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      6    5
  3Q LOSS WILD-TYPE   56   91
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               6                56
  MALE                 5                91
                   vv
clus                 M0  M1 M1A M1B M1C
  3Q LOSS MUTATED     9   0   0   0   0
  3Q LOSS WILD-TYPE 125   2   2   1   2
D42V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  3Q LOSS MUTATED    4  0   0   1  0   0   3   1  0  0
  3Q LOSS WILD-TYPE 83  2   7  12  1   3   7   4 12  2
D42V5, multiclass
D42V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3Q LOSS MUTATED         1        2        0        0         0         1
  3Q LOSS WILD-TYPE      16        7       13       18         8         8
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  3Q LOSS MUTATED           0         1          0          3          1
  3Q LOSS WILD-TYPE         8         6          6         14         17
                   vv
clus                STAGE IV
  3Q LOSS MUTATED          0
  3Q LOSS WILD-TYPE        5
D42V7, multiclass

Clustering(43) Variable = 4p loss mutation analysis
D43V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED    9  7
  4P LOSS WILD-TYPE 72 66
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               16               138 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                7                66 
$`4P LOSS MUTATED`
TCGA-D3-A3CC TCGA-D9-A148 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-EE-A29C TCGA-EE-A2GM 
       71.24       148.31         3.22        36.03        47.84        75.48 
TCGA-EE-A2GO TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A3AG TCGA-ER-A19D 
      101.95       167.87        43.23       136.44        23.47        12.59 
TCGA-FS-A1Z0 TCGA-FS-A1ZA TCGA-FW-A3TU TCGA-GN-A266 
      202.62        27.68        47.54        10.09 

$`4P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        58.03         9.30        21.47        49.74         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        6.38        11.34        48.89       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E 
      109.64        78.87       168.26        63.32        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       55.00        90.94        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MT 
      144.76       203.01        47.54       248.61       103.56        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       13.81       138.77        26.37         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
       44.05        79.99        80.32        33.21        80.48       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB 
       48.59       228.59        20.91        28.08         7.76        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       26.56        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
       12.43        49.45         0.20        22.98        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             3.22              0.20 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           202.62            345.96 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            47.69             47.54 
[1] "3.2 - 202.6 (47.7)" "0.2 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     10    6
  4P LOSS WILD-TYPE   52   90
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              10                52
  MALE                 6                90
                   vv
clus                 M0  M1 M1A M1B M1C
  4P LOSS MUTATED    12   0   0   1   0
  4P LOSS WILD-TYPE 122   2   2   0   2
D43V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  4P LOSS MUTATED    8  0   0   2  0   1   0   1  1  0
  4P LOSS WILD-TYPE 79  2   7  11  1   2  10   4 11  2
D43V5, multiclass
D43V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4P LOSS MUTATED         1        1        2        2         0         0
  4P LOSS WILD-TYPE      16        8       11       16         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  4P LOSS MUTATED           2         0          1          3          0
  4P LOSS WILD-TYPE         6         7          5         14         18
                   vv
clus                STAGE IV
  4P LOSS MUTATED          0
  4P LOSS WILD-TYPE        5
D43V7, multiclass

Clustering(44) Variable = 4q loss mutation analysis
D44V1, survival
                   sevent
clus2                0  1
  4Q LOSS MUTATED    9  7
  4Q LOSS WILD-TYPE 72 66
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               16               138 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                7                66 
$`4Q LOSS MUTATED`
TCGA-D3-A3CC TCGA-D9-A148 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-EE-A181 TCGA-EE-A29C 
       71.24       148.31         3.22        36.03        33.73        47.84 
TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A3AG 
       75.48       101.95       167.87        43.23       136.44        23.47 
TCGA-ER-A19D TCGA-FS-A1Z0 TCGA-FW-A3TU TCGA-GN-A266 
       12.59       202.62        47.54        10.09 

$`4Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        58.03         9.30        21.47        49.74         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        6.38        11.34        48.89       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       78.87       168.26        63.32        13.97        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       90.94        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU 
      203.01        47.54       248.61       103.56        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
      138.77        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
       79.99        80.32        33.21        80.48       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      228.59        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       26.56        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
       12.43        49.45         0.20        22.98        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             3.22              0.20 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           202.62            345.96 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            47.69             47.54 
[1] "3.2 - 202.6 (47.7)" "0.2 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     10    6
  4Q LOSS WILD-TYPE   52   90
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              10                52
  MALE                 6                90
                   vv
clus                 M0  M1 M1A M1B M1C
  4Q LOSS MUTATED    12   0   0   1   0
  4Q LOSS WILD-TYPE 122   2   2   0   2
D44V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  4Q LOSS MUTATED    9  0   0   2  0   1   0   0  1  0
  4Q LOSS WILD-TYPE 78  2   7  11  1   2  10   5 11  2
D44V5, multiclass
D44V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4Q LOSS MUTATED         1        1        2        3         0         0
  4Q LOSS WILD-TYPE      16        8       11       15         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  4Q LOSS MUTATED           2         0          1          2          0
  4Q LOSS WILD-TYPE         6         7          5         15         18
                   vv
clus                STAGE IV
  4Q LOSS MUTATED          0
  4Q LOSS WILD-TYPE        5
D44V7, multiclass

Clustering(45) Variable = 5p loss mutation analysis
D45V1, survival
                   sevent
clus2                0  1
  5P LOSS MUTATED   13  9
  5P LOSS WILD-TYPE 68 64
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               22               132 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                64 
$`5P LOSS MUTATED`
TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A2A2 
       29.82         4.93        47.84        39.62        44.35        24.43 
TCGA-EE-A2GE TCGA-EE-A2GJ TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2MM TCGA-EE-A2MQ 
      135.91        89.33        14.30        19.56       167.87        43.23 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-FS-A1ZG TCGA-FS-A1ZM TCGA-FS-A1ZT TCGA-FS-A1ZY 
      122.73         3.68         9.70       101.26        53.16        27.06 
TCGA-FS-A4F2 TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A268 
       50.14       120.46        10.09        62.76 

$`5P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A181 
       28.60        10.49       215.44        15.68         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       14.70        26.86       109.64        78.87       168.26        63.32 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       13.97        32.19         2.56        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        22.55        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
      101.95        13.87        55.59        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN 
       16.96       204.62        96.23       144.76       203.01        47.54 
TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
       25.84        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       80.32        33.21        80.48       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       53.52        40.27        15.45        32.71        47.38        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZZ 
       74.73        11.41       148.77        26.56        49.48        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       77.79        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       76.41       117.93        84.72        64.41        32.48        39.58 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             3.68              0.20 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           167.87            345.96 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           43.790            48.065 
[1] "3.7 - 167.9 (43.8)" "0.2 - 346.0 (48.1)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      8   14
  5P LOSS WILD-TYPE   54   82
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               8                54
  MALE                14                82
                   vv
clus                 M0  M1 M1A M1B M1C
  5P LOSS MUTATED    18   0   0   0   0
  5P LOSS WILD-TYPE 116   2   2   1   2
D45V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  5P LOSS MUTATED   11  0   0   3  0   1   1   1  1  0
  5P LOSS WILD-TYPE 76  2   7  10  1   2   9   4 11  2
D45V5, multiclass
D45V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5P LOSS MUTATED         2        2        2        1         1         2
  5P LOSS WILD-TYPE      15        7       11       17         7         7
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  5P LOSS MUTATED           1         2          1          2          2
  5P LOSS WILD-TYPE         7         5          5         15         16
                   vv
clus                STAGE IV
  5P LOSS MUTATED          0
  5P LOSS WILD-TYPE        5
D45V7, multiclass

Clustering(46) Variable = 5q loss mutation analysis
D46V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED   18 14
  5Q LOSS WILD-TYPE 63 59
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               32               122 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               14                59 
$`5Q LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I5 
       58.03         6.38        11.34        36.03        20.38       107.34 
TCGA-DA-A1I7 TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29E 
       61.18        29.82         4.93       168.26        47.84        39.62 
TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A2A2 TCGA-EE-A2GE TCGA-EE-A2GJ TCGA-EE-A2GR 
       44.35        25.87        24.43       135.91        89.33        14.30 
TCGA-EE-A2GT TCGA-EE-A2M6 TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A3AB TCGA-EE-A3AD 
       19.56       129.24       167.87        43.23       122.73         3.68 
TCGA-EE-A3AH TCGA-FS-A1ZB TCGA-FS-A1ZG TCGA-FS-A1ZM TCGA-FS-A1ZT TCGA-GN-A262 
      138.77        48.85         9.70       101.26        53.16       120.46 
TCGA-GN-A266 TCGA-GN-A268 
       10.09        62.76 

$`5Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        71.24         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.70         3.22        48.89       117.17       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       35.93        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
       10.49       215.44        15.68         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29H 
       26.86       109.64        78.87        63.32        13.97        32.19 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        2.56        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 
      345.96        17.92        46.82        78.94        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK 
       47.54        43.23       314.53       182.01        22.55        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS 
       55.00        75.48        90.94       101.95        13.87        55.59 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       67.13        21.67        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
      203.01        47.54       248.61       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
       53.26         4.24        25.84        26.73        13.81        23.47 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       12.59        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
       79.99        80.32        33.21        80.48       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       53.52        40.27        15.45        32.71        47.38        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       74.73        11.41       148.77        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.02        77.79        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
       22.98        47.54        76.41       117.93        84.72        64.41 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             3.68              0.20 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           168.26            345.96 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           46.095            47.540 
[1] "3.7 - 168.3 (46.1)" "0.2 - 346.0 (47.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     11   22
  5Q LOSS WILD-TYPE   51   74
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              11                51
  MALE                22                74
                   vv
clus                 M0  M1 M1A M1B M1C
  5Q LOSS MUTATED    26   0   1   0   1
  5Q LOSS WILD-TYPE 108   2   1   1   1
D46V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  5Q LOSS MUTATED   15  0   0   5  0   1   2   1  3  1
  5Q LOSS WILD-TYPE 72  2   7   8  1   2   8   4  9  1
D46V5, multiclass
D46V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5Q LOSS MUTATED         4        2        3        3         1         1
  5Q LOSS WILD-TYPE      13        7       10       15         7         8
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  5Q LOSS MUTATED           0         2          1          4          5
  5Q LOSS WILD-TYPE         8         5          5         13         13
                   vv
clus                STAGE IV
  5Q LOSS MUTATED          1
  5Q LOSS WILD-TYPE        4
D46V7, multiclass

Clustering(47) Variable = 6p loss mutation analysis
D47V1, survival
                   sevent
clus2                0  1
  6P LOSS MUTATED    7  6
  6P LOSS WILD-TYPE 74 67
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               13               141 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                6                67 
$`6P LOSS MUTATED`
TCGA-DA-A1HY TCGA-DA-A1I8 TCGA-EE-A29D TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29X 
      117.17        53.92        13.97        44.35        37.35        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2MT TCGA-FS-A1YX TCGA-FS-A1ZB TCGA-FS-A1ZS 
       46.82        78.94        41.59        48.59        48.85       148.77 
TCGA-FS-A1ZT 
       53.16 

$`6P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       36.03        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       61.18        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       47.84        39.62        32.19         2.56        18.58        56.42 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A2 TCGA-EE-A2A5 
       14.47        55.89       345.96        25.87        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
      136.44        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        6.41       131.08        61.05        44.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       33.21        80.48       216.92       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       28.08         7.76        27.68        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
       11.41        26.56        49.48        27.06        27.02        77.79 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       50.14        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            13.97              0.20 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           148.77            345.96 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            48.59             47.54 
[1] "14.0 - 148.8 (48.6)" "0.2 - 346.0 (47.5)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      6    8
  6P LOSS WILD-TYPE   56   88
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               6                56
  MALE                 8                88
                   vv
clus                 M0  M1 M1A M1B M1C
  6P LOSS MUTATED    13   0   0   0   0
  6P LOSS WILD-TYPE 121   2   2   1   2
D47V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  6P LOSS MUTATED    9  0   0   2  0   0   0   0  2  0
  6P LOSS WILD-TYPE 78  2   7  11  1   3  10   5 10  2
D47V5, multiclass
D47V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6P LOSS MUTATED         1        0        4        2         1         1
  6P LOSS WILD-TYPE      16        9        9       16         7         8
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  6P LOSS MUTATED           0         1          0          0          3
  6P LOSS WILD-TYPE         8         6          6         17         15
                   vv
clus                STAGE IV
  6P LOSS MUTATED          0
  6P LOSS WILD-TYPE        5
D47V7, multiclass

Clustering(48) Variable = 6q loss mutation analysis
D48V1, survival
                   sevent
clus2                0  1
  6Q LOSS MUTATED   32 29
  6Q LOSS WILD-TYPE 49 44
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               61                93 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               29                44 
$`6Q LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D9-A148 TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY 
       58.03       148.31         6.38         3.22        48.89       117.17 
TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-DA-A3F5 
      194.83        35.93        61.18        53.92        68.09       215.44 
TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
       14.70         4.93       109.64       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V 
       13.97        32.19        44.35        37.35        55.89        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GD TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MT 
      314.53       101.95        67.13       129.24        28.80        41.59 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.84         3.68        23.47        12.59        26.37         6.41 
TCGA-ER-A3PL TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1ZB TCGA-FS-A1ZF TCGA-FS-A1ZG 
       33.21        48.59       202.62        48.85        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       32.71        47.38       101.26        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A267 TCGA-GN-A268 
       26.56        49.48         0.20        22.98        64.41        62.76 
TCGA-GN-A26A 
       32.48 

$`6Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        71.24         9.30        21.47        49.74         2.70 
TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IA 
       11.34        36.03        20.38       176.55       107.34        65.92 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       23.44        28.60        10.49        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N 
       33.73        26.86        78.87        39.62         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE 
       56.42        14.47       345.96        47.54        43.23       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 
       90.94        13.87        14.30        55.59        19.56        21.67 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56       136.44        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19L TCGA-ER-A19M 
      122.73        26.73        13.81       138.77       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY 
       44.05        79.99        80.32        80.48       216.92       228.59 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZE 
       20.91        28.08         7.76        27.68        53.52        40.27 
TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       23.93        74.73        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       12.43        49.45        47.54        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26D 
       84.72        10.09        39.58 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.20              2.56 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           314.53            345.96 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            46.82             49.45 
[1] "0.2 - 314.5 (46.8)" "2.6 - 346.0 (49.5)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     26   38
  6Q LOSS WILD-TYPE   36   58
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              26                36
  MALE                38                58
                   vv
clus                M0 M1 M1A M1B M1C
  6Q LOSS MUTATED   54  2   1   1   1
  6Q LOSS WILD-TYPE 80  0   1   0   1
D48V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  6Q LOSS MUTATED   32  0   4   7  1   0   4   3  7  1
  6Q LOSS WILD-TYPE 55  2   3   6  0   3   6   2  5  1
D48V5, multiclass
D48V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6Q LOSS MUTATED         4        4        8        6         2         3
  6Q LOSS WILD-TYPE      13        5        5       12         6         6
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  6Q LOSS MUTATED           2         3          3          8          9
  6Q LOSS WILD-TYPE         6         4          3          9          9
                   vv
clus                STAGE IV
  6Q LOSS MUTATED          4
  6Q LOSS WILD-TYPE        1
D48V7, multiclass

Clustering(49) Variable = 8p loss mutation analysis
D49V1, survival
                   sevent
clus2                0  1
  8P LOSS MUTATED    8 12
  8P LOSS WILD-TYPE 73 61
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               20               134 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               12                61 
$`8P LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A1JW TCGA-EE-A183 TCGA-EE-A29C 
       58.03         9.30       148.31         2.70        26.86        47.84 
TCGA-EE-A29H TCGA-EE-A29V TCGA-EE-A2A5 TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MS 
       32.19        25.87        39.25       167.87        47.54       136.44 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1ZA TCGA-FS-A1ZJ 
        4.24        25.84       228.59       202.62        27.68        47.38 
TCGA-FS-A1ZT TCGA-GN-A264 
       53.16       117.93 

$`8P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JX TCGA-D9-A3Z1 
      121.22        71.24        21.47        49.74         6.38        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        3.22        48.89        36.03       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        33.73        14.70         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L 
       78.87       168.26        63.32        13.97        39.62         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
      345.96        17.92        46.82        78.94        24.43        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB 
      248.61        43.23       103.56        41.59        53.26       122.73 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z3 
       80.32        33.21        80.48       216.92        48.59        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       28.08         7.76        48.85        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
        9.70        32.71        23.93       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
      148.77        26.56        49.48        27.06        27.02        77.79 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       50.14        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       76.41       120.46        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              2.7               0.2 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           228.59            345.96 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           47.460            48.065 
[1] "2.7 - 228.6 (47.5)" "0.2 - 346.0 (48.1)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      7   14
  8P LOSS WILD-TYPE   55   82
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE               7                55
  MALE                14                82
                   vv
clus                 M0  M1 M1A M1B M1C
  8P LOSS MUTATED    16   0   0   1   0
  8P LOSS WILD-TYPE 118   2   2   0   2
D49V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  8P LOSS MUTATED   11  0   0   2  0   1   0   2  1  0
  8P LOSS WILD-TYPE 76  2   7  11  1   2  10   3 11  2
D49V5, multiclass
D49V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8P LOSS MUTATED         4        2        3        1         1         0
  8P LOSS WILD-TYPE      13        7       10       17         7         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  8P LOSS MUTATED           0         2          0          1          1
  8P LOSS WILD-TYPE         8         5          6         16         17
                   vv
clus                STAGE IV
  8P LOSS MUTATED          0
  8P LOSS WILD-TYPE        5
D49V7, multiclass

Clustering(50) Variable = 8q loss mutation analysis
D50V1, survival
                   sevent
clus2                0  1
  8Q LOSS MUTATED    0  3
  8Q LOSS WILD-TYPE 81 70
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                3               151 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                3                70 
$`8Q LOSS MUTATED`
TCGA-EE-A2MM TCGA-FS-A1ZA TCGA-FS-A1ZJ 
      167.87        27.68        47.38 

$`8Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       33.73        14.70        26.86         4.93       109.64        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
      168.26        63.32        47.84        13.97        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       144.76       203.01        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       12.59        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
       79.99        80.32        33.21        80.48       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB 
      228.59       202.62        20.91        28.08         7.76        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZK 
       53.52        40.27        15.45         9.70        32.71        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
      101.26        74.73        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
       49.48        27.06        27.02        77.79        50.14        12.43 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       49.45         0.20        22.98        47.54        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            27.68              0.20 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           167.87            345.96 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            47.38             47.54 
[1] "27.7 - 167.9 (47.4)" "0.2 - 346.0 (47.5)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      3    0
  8Q LOSS WILD-TYPE   59   96
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               3                59
  MALE                 0                96
                   vv
clus                 M0  M1 M1A M1B M1C
  8Q LOSS MUTATED     3   0   0   0   0
  8Q LOSS WILD-TYPE 131   2   2   1   2
D50V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  8Q LOSS MUTATED    2  0   0   0  0   0   0   1  0  0
  8Q LOSS WILD-TYPE 85  2   7  13  1   3  10   4 12  2
D50V5, multiclass
D50V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8Q LOSS MUTATED         2        0        0        0         0         0
  8Q LOSS WILD-TYPE      15        9       13       18         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  8Q LOSS MUTATED           0         0          0          1          0
  8Q LOSS WILD-TYPE         8         7          6         16         18
                   vv
clus                STAGE IV
  8Q LOSS MUTATED          0
  8Q LOSS WILD-TYPE        5
D50V7, multiclass

Clustering(51) Variable = 9p loss mutation analysis
D51V1, survival
                   sevent
clus2                0  1
  9P LOSS MUTATED   43 45
  9P LOSS WILD-TYPE 38 28
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               88                66 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               45                28 
$`9P LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       58.03         9.30       148.31        49.74         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       36.03       117.17       194.83       176.55        35.93       107.34 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 
       53.92        65.92        68.09        29.82        33.73        14.70 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29D 
        4.93       109.64        78.87       168.26        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S 
       39.62         2.56        18.58        56.42        37.35        55.89 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC 
       25.87        17.92        46.82        39.25        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GI TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
      314.53        22.55        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MD TCGA-EE-A2MH 
       14.30        55.59        67.13       129.24        47.28        16.96 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AD 
      144.76       203.01        47.54       136.44       122.73         3.68 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L 
       13.81        23.47       138.77        12.59        26.37       131.08 
TCGA-ER-A19M TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       61.05        33.21        80.48       216.92        48.59       228.59 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZF 
       20.91         7.76        27.68        48.85        53.52        15.45 
TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A1ZY 
       32.71       101.26        11.41       148.77        49.48        27.06 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       47.54        62.76        32.48        39.58 

$`9P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MV TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 
      121.22        71.24        21.47         2.70         6.38        11.34 
TCGA-DA-A1I0 TCGA-DA-A1I7 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       20.38        61.18        23.44        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A29A TCGA-EE-A29H TCGA-EE-A29M 
       15.68         8.65        26.86        63.32        32.19        44.35 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GE 
       14.47       345.96        78.94        24.43        58.75       135.91 
TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M5 
      182.01        89.33        54.71        55.00        19.56        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI 
       28.80        19.76        61.51       103.27       103.17       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT 
       96.23       167.87       248.61        43.23       103.56        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE TCGA-ER-A19J TCGA-ER-A19N 
       53.26         4.24        25.84        26.73         6.41        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZE TCGA-FS-A1ZG 
       79.99        80.32       202.62        28.08        40.27         9.70 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZZ 
       47.38        23.93        74.73        53.16        26.56        27.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              0.2               2.7 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           314.53            345.96 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           47.690            45.865 
[1] "0.2 - 314.5 (47.7)" "2.7 - 346.0 (45.9)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" 
[1] "hr=" "1.2"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     37   54
  9P LOSS WILD-TYPE   25   42
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              37                25
  MALE                54                42
                   vv
clus                M0 M1 M1A M1B M1C
  9P LOSS MUTATED   76  1   1   1   2
  9P LOSS WILD-TYPE 58  1   1   0   0
D51V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  9P LOSS MUTATED   52  0   4  10  1   0   3   5  7  0
  9P LOSS WILD-TYPE 35  2   3   3  0   3   7   0  5  2
D51V5, multiclass
D51V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9P LOSS MUTATED         4        3        9       14         6         6
  9P LOSS WILD-TYPE      13        6        4        4         2         3
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  9P LOSS MUTATED           5         3          2         11         11
  9P LOSS WILD-TYPE         3         4          4          6          7
                   vv
clus                STAGE IV
  9P LOSS MUTATED          4
  9P LOSS WILD-TYPE        1
D51V7, multiclass

Clustering(52) Variable = 9q loss mutation analysis
D52V1, survival
                   sevent
clus2                0  1
  9Q LOSS MUTATED   35 34
  9Q LOSS WILD-TYPE 46 39
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               69                85 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               34                39 
$`9Q LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D9-A148 TCGA-D9-A149 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 
       58.03       148.31        49.74        48.89        36.03       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC 
      176.55        35.93       107.34        53.92        65.92        68.09 
TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29L 
       33.73       109.64        78.87       168.26        13.97         2.56 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
       18.58        56.42        37.35        55.89        17.92        46.82 
TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GI TCGA-EE-A2GJ 
       24.43        47.54        43.23       314.53        22.55        89.33 
TCGA-EE-A2GM TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M6 TCGA-EE-A2MH TCGA-EE-A2MK 
       75.48        13.87        55.59       129.24        16.96       144.76 
TCGA-EE-A2ML TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AF 
      203.01        43.23       136.44       122.73         3.68        13.81 
TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19M TCGA-ER-A3PL TCGA-FS-A1YW 
       23.47        12.59        26.37        61.05        33.21       216.92 
TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZF TCGA-FS-A1ZH 
      228.59        20.91        27.68        48.85        15.45        32.71 
TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      101.26        11.41       148.77        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A262 
       77.79        50.14        49.45         0.20        22.98       120.46 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

$`9Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A1JW TCGA-D9-A1JX 
      121.22        71.24         9.30        21.47         2.70         6.38 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I7 TCGA-DA-A1IB 
       11.34         3.22       117.17        20.38        61.18        23.44 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
       14.70        26.86         4.93        63.32        47.84        39.62 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A1 
       32.19        44.35        14.47       345.96        25.87        78.94 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GL 
       39.25        58.75       135.91       182.01        54.71        55.00 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       90.94       101.95        14.30        19.56        67.13        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR 
      204.62        96.23       167.87        47.54       248.61       103.56 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AH 
       41.59        53.26         4.24        25.84        26.73       138.77 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A3YN 
        6.41       131.08        44.05        79.99        80.32        80.48 
TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZE 
       48.59       202.62        28.08         7.76        53.52        40.27 
TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZT TCGA-FS-A1ZU 
        9.70        47.38        23.93        74.73        53.16        26.56 
TCGA-FS-A4F9 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       12.43        47.54        76.41       117.93        84.72        10.09 
TCGA-GN-A267 
       64.41 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              0.2               2.7 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           314.53            345.96 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            48.89             47.38 
[1] "0.2 - 314.5 (48.9)" "2.7 - 346.0 (47.4)"
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GN-A26A        TCGA-GN-A26D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
[1] "hr=" "1"  
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     35   37
  9Q LOSS WILD-TYPE   27   59
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              35                27
  MALE                37                59
                   vv
clus                M0 M1 M1A M1B M1C
  9Q LOSS MUTATED   58  1   1   1   2
  9Q LOSS WILD-TYPE 76  1   1   0   0
D52V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  9Q LOSS MUTATED   41  0   4   5  1   1   4   4  4  0
  9Q LOSS WILD-TYPE 46  2   3   8  0   2   6   1  8  2
D52V5, multiclass
D52V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9Q LOSS MUTATED         2        2        6       10         4         7
  9Q LOSS WILD-TYPE      15        7        7        8         4         2
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  9Q LOSS MUTATED           5         3          3          9          5
  9Q LOSS WILD-TYPE         3         4          3          8         13
                   vv
clus                STAGE IV
  9Q LOSS MUTATED          4
  9Q LOSS WILD-TYPE        1
D52V7, multiclass

Clustering(53) Variable = 10p loss mutation analysis
D53V1, survival
                    sevent
clus2                 0  1
  10P LOSS MUTATED   30 36
  10P LOSS WILD-TYPE 51 37
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                66                 88 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                36                 37 
$`10P LOSS MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 
      121.22         9.30         3.22        36.03       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-EE-A17Z 
       35.93       107.34        61.18        53.92        65.92         8.65 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29H TCGA-EE-A29L 
        4.93       109.64        78.87       168.26        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29X TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC 
       44.35        56.42        17.92        39.25        47.54        43.23 
TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
      135.91        22.55        89.33        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MH 
       13.87        55.59        67.13       129.24        28.80        16.96 
TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AD TCGA-EE-A3AE 
      144.76       167.87       248.61       136.44         3.68        26.73 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
      138.77        12.59       131.08        80.32        33.21        80.48 
TCGA-FS-A1YX TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZF 
       48.59        20.91         7.76        27.68        53.52        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZU 
        9.70        32.71        47.38       101.26        11.41        26.56 
TCGA-FS-A1ZY TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       27.06       117.93        10.09        64.41        62.76        32.48 

$`10P LOSS WILD-TYPE`
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW 
       58.03        71.24        21.47       148.31        49.74         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1IB 
        6.38        11.34        48.89       117.17        20.38        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       68.09        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       33.73        14.70        26.86        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       39.62        18.58        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GD 
       25.87        46.82        78.94        24.43        58.75       314.53 
TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M5 
      182.01        54.71        55.00        14.30        19.56        21.67 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI 
       19.76        61.51        47.28       103.27       103.17       204.62 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT 
       96.23       203.01        47.54        43.23       103.56        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AG 
       53.26         4.24       122.73        25.84        13.81        23.47 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW 
       26.37         6.41        61.05        44.05        79.99       216.92 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZK 
      228.59       202.62        28.08        48.85        40.27        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FS-A4F0 
       74.73       148.77        53.16        49.48        27.02        77.79 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       50.14        12.43        49.45         0.20        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A26D 
       76.41       120.46        84.72        39.58 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              2.56               0.20 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            248.61             345.96 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            48.065             47.540 
[1] "2.6 - 248.6 (48.1)" "0.2 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-GN-A26D 
"10P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-GN-A26D 
"10P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-GN-A26D 
"10P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     32   37
  10P LOSS WILD-TYPE   30   59
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               32                 30
  MALE                 37                 59
                    vv
clus                 M0 M1 M1A M1B M1C
  10P LOSS MUTATED   59  0   1   0   2
  10P LOSS WILD-TYPE 75  2   1   1   0
D53V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  10P LOSS MUTATED   40  0   5   4  0   0   5   4  4  0
  10P LOSS WILD-TYPE 47  2   2   9  1   3   5   1  8  2
D53V5, multiclass
D53V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10P LOSS MUTATED         7        5        7        9         2         4
  10P LOSS WILD-TYPE      10        4        6        9         6         5
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  10P LOSS MUTATED           4         3          4          7          7
  10P LOSS WILD-TYPE         4         4          2         10         11
                    vv
clus                 STAGE IV
  10P LOSS MUTATED          3
  10P LOSS WILD-TYPE        2
D53V7, multiclass

Clustering(54) Variable = 10q loss mutation analysis
D54V1, survival
                    sevent
clus2                 0  1
  10Q LOSS MUTATED   34 39
  10Q LOSS WILD-TYPE 47 34
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                73                 81 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                39                 34 
$`10Q LOSS MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A3Z3 TCGA-DA-A1HW 
      121.22        58.03         9.30       148.31         3.22        36.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       65.92        15.68         8.65         4.93       109.64        78.87 
TCGA-EE-A20H TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29X 
      168.26        32.19         2.56        44.35        56.42        17.92 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       22.55        89.33        75.48        90.94       101.95        13.87 
TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MD TCGA-EE-A2MH 
       55.59        67.13       129.24        28.80        47.28        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A3AD TCGA-EE-A3AE 
      204.62       144.76       167.87       248.61         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3PL 
       13.81        23.47       138.77        12.59       131.08        33.21 
TCGA-FR-A3YN TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
       80.48        48.59       228.59        20.91         7.76        27.68 
TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZR 
       53.52        15.45        32.71        47.38       101.26        11.41 
TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 
       26.56        27.06       120.46       117.93        10.09        64.41 
TCGA-GN-A26A 
       32.48 

$`10Q LOSS WILD-TYPE`
TCGA-D3-A3CC TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 
       71.24        21.47        49.74         2.70         6.38        11.34 
TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       48.89       117.17        20.38        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       10.49       215.44        29.82        33.73        14.70        26.86 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29Q 
       63.32        47.84        13.97        39.62        18.58        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 
       14.47        55.89       345.96        25.87        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GR TCGA-EE-A2GT 
       24.43       182.01        54.71        55.00        14.30        19.56 
TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MJ 
       21.67        19.76        61.51       103.27       103.17        96.23 
TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
      203.01        47.54        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-ER-A19F TCGA-ER-A19J 
       53.26         4.24       122.73        25.84        26.37         6.41 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1Z0 
       61.05        44.05        79.99        80.32       216.92       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZK TCGA-FS-A1ZP 
       28.08        48.85        40.27         9.70        23.93        74.73 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
      148.77        53.16        49.48        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       12.43        49.45         0.20        22.98        47.54        76.41 
TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A26D 
       84.72        62.76        39.58 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              2.56               0.20 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            314.53             345.96 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             48.59              47.54 
[1] "2.6 - 314.5 (48.6)" "0.2 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A26D 
"10Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A26D 
"10Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GN-A26D 
"10Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     34   42
  10Q LOSS WILD-TYPE   28   54
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               34                 28
  MALE                 42                 54
                    vv
clus                 M0 M1 M1A M1B M1C
  10Q LOSS MUTATED   62  0   1   1   2
  10Q LOSS WILD-TYPE 72  2   1   0   0
D54V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  10Q LOSS MUTATED   44  0   4   4  0   0   5   4  5  0
  10Q LOSS WILD-TYPE 43  2   3   9  1   3   5   1  7  2
D54V5, multiclass
D54V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10Q LOSS MUTATED         7        6        8        9         3         5
  10Q LOSS WILD-TYPE      10        3        5        9         5         4
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  10Q LOSS MUTATED           4         3          3          8          6
  10Q LOSS WILD-TYPE         4         4          3          9         12
                    vv
clus                 STAGE IV
  10Q LOSS MUTATED          3
  10Q LOSS WILD-TYPE        2
D54V7, multiclass

Clustering(55) Variable = 11p loss mutation analysis
D55V1, survival
                    sevent
clus2                 0  1
  11P LOSS MUTATED   21 20
  11P LOSS WILD-TYPE 60 53
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                41                113 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                20                 53 
$`11P LOSS MUTATED`
TCGA-D3-A3MO TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 
        9.30         6.38         3.22        48.89        36.03       194.83 
TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-EE-A182 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29L 
      107.34        53.92        14.70        47.84        13.97         2.56 
TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A2 
       44.35        37.35        14.47        25.87        17.92        24.43 
TCGA-EE-A2A5 TCGA-EE-A2GC TCGA-EE-A2GM TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A3AB 
       39.25        43.23        75.48        47.54       136.44       122.73 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3PL TCGA-FR-A3YN 
        3.68        26.73        12.59       131.08        33.21        80.48 
TCGA-FS-A1Z3 TCGA-FS-A1ZA TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A4F9 
       20.91        27.68        15.45        32.71        47.38        12.43 
TCGA-FW-A3I3 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A26A 
        0.20       120.46       117.93        64.41        32.48 

$`11P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03        71.24        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
        2.70        11.34       117.17        20.38       176.55        35.93 
TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       61.18        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29E 
        4.93       109.64        78.87       168.26        63.32        39.62 
TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A2A0 
       32.19        18.58        56.42        55.89       345.96        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       78.94        58.75        47.54       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO 
       22.55        89.33        54.71        55.00        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU 
      167.87       248.61        43.23       103.56        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F 
        4.24        25.84        13.81        23.47       138.77        26.37 
TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41        61.05        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB 
       48.59       228.59       202.62        28.08         7.76        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
       53.52        40.27         9.70        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU 
       27.02        77.79        50.14        49.45        22.98        47.54 
TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26D 
       76.41        84.72        10.09        62.76        39.58 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               0.2                2.7 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            194.83             345.96 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             33.21              53.16 
[1] "0.2 - 194.8 (33.2)" "2.7 - 346.0 (53.2)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GN-A26D 
"11P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GN-A26D 
"11P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GN-A26D 
"11P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     21   20
  11P LOSS WILD-TYPE   41   76
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               21                 41
  MALE                 20                 76
                    vv
clus                  M0  M1 M1A M1B M1C
  11P LOSS MUTATED    31   1   1   0   2
  11P LOSS WILD-TYPE 103   1   1   1   0
D55V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  11P LOSS MUTATED   17  0   2   7  0   0   1   3  4  1
  11P LOSS WILD-TYPE 70  2   5   6  1   3   9   2  8  1
D55V5, multiclass
D55V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11P LOSS MUTATED         2        1        6        1         0         2
  11P LOSS WILD-TYPE      15        8        7       17         8         7
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  11P LOSS MUTATED           2         1          2          5          8
  11P LOSS WILD-TYPE         6         6          4         12         10
                    vv
clus                 STAGE IV
  11P LOSS MUTATED          4
  11P LOSS WILD-TYPE        1
D55V7, multiclass

Clustering(56) Variable = 11q loss mutation analysis
D56V1, survival
                    sevent
clus2                 0  1
  11Q LOSS MUTATED   22 22
  11Q LOSS WILD-TYPE 59 51
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                44                110 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                22                 51 
$`11Q LOSS MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A3MO TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
      121.22         9.30         6.38         3.22        48.89        36.03 
TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-EE-A182 TCGA-EE-A29C TCGA-EE-A29D 
      194.83       107.34        53.92        14.70        47.84        13.97 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A2A2 
        2.56        44.35        37.35        14.47        25.87        24.43 
TCGA-EE-A2A5 TCGA-EE-A2GC TCGA-EE-A2GM TCGA-EE-A2MD TCGA-EE-A2MN TCGA-EE-A2MT 
       39.25        43.23        75.48        47.28        47.54        41.59 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3PL 
      122.73         3.68        26.73        12.59       131.08        33.21 
TCGA-FR-A3YN TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZE TCGA-FS-A1ZF 
       80.48        20.91         7.76        27.68        40.27        15.45 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A267 
       32.71        47.38        27.02         0.20       117.93        64.41 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

$`11Q LOSS WILD-TYPE`
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW 
       58.03        71.24        21.47       148.31        49.74         2.70 
TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
       11.34       117.17        20.38       176.55        35.93        61.18 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        33.73        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29H 
      109.64        78.87       168.26        63.32        39.62        32.19 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 
       18.58        56.42        55.89       345.96        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       78.94        58.75        47.54       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO 
       22.55        89.33        54.71        55.00        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG 
      129.24        28.80        19.76        61.51       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56       136.44        53.26         4.24 
TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
       25.84        13.81        23.47       138.77        26.37         6.41 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
       61.05        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZG 
      228.59       202.62        28.08        48.85        53.52         9.70 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
       26.56        49.48        27.06        77.79        50.14        12.43 
TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 
       49.45        22.98        47.54        76.41       120.46        84.72 
TCGA-GN-A266 TCGA-GN-A268 
       10.09        62.76 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               0.2                2.7 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            194.83             345.96 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            36.690             54.115 
[1] "0.2 - 194.8 (36.7)" "2.7 - 346.0 (54.1)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GN-A26D 
  "11Q LOSS MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GN-A26D 
  "11Q LOSS MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GN-A26D 
  "11Q LOSS MUTATED" 
[1] "hr=" "1.7"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     22   22
  11Q LOSS WILD-TYPE   40   74
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               22                 40
  MALE                 22                 74
                    vv
clus                  M0  M1 M1A M1B M1C
  11Q LOSS MUTATED    34   1   1   0   2
  11Q LOSS WILD-TYPE 100   1   1   1   0
D56V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  11Q LOSS MUTATED   21  0   2   8  0   0   1   3  3  1
  11Q LOSS WILD-TYPE 66  2   5   5  1   3   9   2  9  1
D56V5, multiclass
D56V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11Q LOSS MUTATED         2        1        7        1         0         3
  11Q LOSS WILD-TYPE      15        8        6       17         8         6
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  11Q LOSS MUTATED           4         1          2          5          8
  11Q LOSS WILD-TYPE         4         6          4         12         10
                    vv
clus                 STAGE IV
  11Q LOSS MUTATED          4
  11Q LOSS WILD-TYPE        1
D56V7, multiclass

Clustering(57) Variable = 12p loss mutation analysis
D57V1, survival
                    sevent
clus2                 0  1
  12P LOSS MUTATED    5  3
  12P LOSS WILD-TYPE 76 70
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 8                146 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 3                 70 
$`12P LOSS MUTATED`
TCGA-DA-A1I1 TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A2A2 TCGA-EE-A2MK TCGA-FS-A1YX 
      194.83        37.35        55.89        24.43       144.76        48.59 
TCGA-FS-A1ZA TCGA-FS-A1ZH 
       27.68        32.71 

$`12P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       36.03       117.17        20.38       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V 
       44.35        18.58        56.42        14.47       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       17.92        46.82        78.94        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62        96.23       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
       61.05        44.05        79.99        80.32        33.21        80.48 
TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
      216.92       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ 
       48.85        53.52        40.27        15.45         9.70        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       26.56        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       12.43        49.45         0.20        22.98        47.54        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             24.43               0.20 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            194.83             345.96 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             42.97              47.54 
[1] "24.4 - 194.8 (43.0)" "0.2 - 346.0 (47.5)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"12P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"12P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"12P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      5    4
  12P LOSS WILD-TYPE   57   92
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                5                 57
  MALE                  4                 92
                    vv
clus                  M0  M1 M1A M1B M1C
  12P LOSS MUTATED     7   0   0   0   1
  12P LOSS WILD-TYPE 127   2   2   1   1
D57V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  12P LOSS MUTATED    4  0   0   1  0   0   0   2  1  0
  12P LOSS WILD-TYPE 83  2   7  12  1   3  10   3 11  2
D57V5, multiclass
D57V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12P LOSS MUTATED         1        0        0        1         1         1
  12P LOSS WILD-TYPE      16        9       13       17         7         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  12P LOSS MUTATED           0         0          0          2          1
  12P LOSS WILD-TYPE         8         7          6         15         17
                    vv
clus                 STAGE IV
  12P LOSS MUTATED          1
  12P LOSS WILD-TYPE        4
D57V7, multiclass

Clustering(58) Variable = 12q loss mutation analysis
D58V1, survival
                    sevent
clus2                 0  1
  12Q LOSS MUTATED   10  6
  12Q LOSS WILD-TYPE 71 67
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                16                138 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 6                 67 
$`12Q LOSS MUTATED`
TCGA-D3-A3CC TCGA-DA-A1I1 TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A2 
       71.24       194.83        37.35        55.89        17.92        24.43 
TCGA-EE-A2A5 TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2MK TCGA-EE-A3AD TCGA-ER-A3PL 
       39.25        14.30        67.13       144.76         3.68        33.21 
TCGA-FS-A1YX TCGA-FS-A1ZA TCGA-FS-A1ZH TCGA-FS-A4F2 
       48.59        27.68        32.71        50.14 

$`12Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        58.03         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 
       18.58        56.42        14.47       345.96        25.87        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       78.94        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 
       90.94       101.95        13.87        55.59        19.56        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM 
      103.17        16.96       204.62        96.23       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF 
       53.26         4.24       122.73        25.84        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1YW 
       61.05        44.05        79.99        80.32        80.48       216.92 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB 
      228.59       202.62        20.91        28.08         7.76        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       53.52        40.27        15.45         9.70        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
      101.26        74.73        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC 
       49.48        27.06        27.02        77.79        12.43        49.45 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        0.20        22.98        47.54        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              3.68               0.20 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            194.83             345.96 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             38.30              47.69 
[1] "3.7 - 194.8 (38.3)" "0.2 - 346.0 (47.7)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"12Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"12Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"12Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      9    8
  12Q LOSS WILD-TYPE   53   88
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                9                 53
  MALE                  8                 88
                    vv
clus                  M0  M1 M1A M1B M1C
  12Q LOSS MUTATED    13   0   1   0   1
  12Q LOSS WILD-TYPE 121   2   1   1   1
D58V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  12Q LOSS MUTATED   11  0   0   1  0   0   0   2  1  0
  12Q LOSS WILD-TYPE 76  2   7  12  1   3  10   3 11  2
D58V5, multiclass
D58V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12Q LOSS MUTATED         1        1        2        2         1         1
  12Q LOSS WILD-TYPE      16        8       11       16         7         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  12Q LOSS MUTATED           2         0          0          2          1
  12Q LOSS WILD-TYPE         6         7          6         15         17
                    vv
clus                 STAGE IV
  12Q LOSS MUTATED          2
  12Q LOSS WILD-TYPE        3
D58V7, multiclass

Clustering(59) Variable = 13q loss mutation analysis
D59V1, survival
                    sevent
clus2                 0  1
  13Q LOSS MUTATED   13 12
  13Q LOSS WILD-TYPE 68 61
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                25                129 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                12                 61 
$`13Q LOSS MUTATED`
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1I2 TCGA-DA-A1I4 
      148.31        49.74         3.22        48.89       176.55        35.93 
TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29M 
       53.92        68.09        33.73        47.84        13.97        44.35 
TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A2GJ TCGA-EE-A2MS TCGA-EE-A3AD 
       18.58        37.35       345.96        89.33       136.44         3.68 
TCGA-EE-A3AH TCGA-FR-A3YN TCGA-FS-A1ZA TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-GN-A266 
      138.77        80.48        27.68        32.71        47.38        10.09 
TCGA-GN-A26D 
       39.58 

$`13Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A1JW 
      121.22        58.03        71.24         9.30        21.47         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        6.38        11.34        36.03       117.17        20.38       194.83 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
      107.34        61.18        65.92        23.44        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29E 
        4.93       109.64        78.87       168.26        63.32        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
       32.19         2.56        56.42        14.47        55.89        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54       248.61        43.23       103.56        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
        4.24       122.73        25.84        26.73        13.81        23.47 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       12.59        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       79.99        80.32        33.21       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD 
      202.62        20.91        28.08         7.76        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
       40.27        15.45         9.70        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.02        77.79        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       22.98        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       64.41        62.76        32.48 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              3.22               0.20 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            345.96             314.53 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             47.38              47.54 
[1] "3.2 - 346.0 (47.4)" "0.2 - 314.5 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
  "13Q LOSS MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
  "13Q LOSS MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
  "13Q LOSS MUTATED" 
[1] "hr=" "1"  
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     11   14
  13Q LOSS WILD-TYPE   51   82
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               11                 51
  MALE                 14                 82
                    vv
clus                  M0  M1 M1A M1B M1C
  13Q LOSS MUTATED    20   0   0   1   1
  13Q LOSS WILD-TYPE 114   2   2   0   1
D59V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  13Q LOSS MUTATED   11  0   0   3  0   0   3   3  2  1
  13Q LOSS WILD-TYPE 76  2   7  10  1   3   7   2 10  1
D59V5, multiclass
D59V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  13Q LOSS MUTATED         1        1        3        3         0         1
  13Q LOSS WILD-TYPE      16        8       10       15         8         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  13Q LOSS MUTATED           1         0          0          5          3
  13Q LOSS WILD-TYPE         7         7          6         12         15
                    vv
clus                 STAGE IV
  13Q LOSS MUTATED          1
  13Q LOSS WILD-TYPE        4
D59V7, multiclass

Clustering(60) Variable = 14q loss mutation analysis
D60V1, survival
                    sevent
clus2                 0  1
  14Q LOSS MUTATED   17 20
  14Q LOSS WILD-TYPE 64 53
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                37                117 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                20                 53 
$`14Q LOSS MUTATED`
TCGA-D3-A3CC TCGA-D9-A149 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I5 
       71.24        49.74        48.89       117.17       194.83       107.34 
TCGA-DA-A3F5 TCGA-EE-A181 TCGA-EE-A29C TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A5 
      215.44        33.73        47.84        25.87        17.92        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GE TCGA-EE-A2GP TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MD 
       58.75       135.91        13.87       129.24        28.80        47.28 
TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A3AH TCGA-ER-A3PL 
       16.96       144.76        47.54       136.44       138.77        33.21 
TCGA-FS-A1YX TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM 
       48.59         7.76        27.68        40.27        32.71       101.26 
TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
       11.41        50.14        12.43       117.93        64.41        62.76 
TCGA-GN-A26A 
       32.48 

$`14Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A1JW 
      121.22        58.03         9.30        21.47       148.31         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I2 
        6.38        11.34         3.22        36.03        20.38       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       35.93        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       28.60        10.49        15.68        29.82         8.65        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A2A0 
       56.42        37.35        14.47        55.89       345.96        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GH 
       78.94        24.43        47.54        43.23       314.53       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
      101.95        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ 
       19.76        61.51       103.27       103.17       204.62        96.23 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT 
      203.01       167.87       248.61        43.23       103.56        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       13.81        23.47        12.59        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1YW 
       61.05        44.05        79.99        80.32        80.48       216.92 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZD 
      228.59       202.62        20.91        28.08        48.85        53.52 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZS 
       15.45         9.70        47.38        23.93        74.73       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
       53.16        26.56        49.48        27.06        27.02        77.79 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       49.45         0.20        22.98        47.54        76.41       120.46 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26D 
       84.72        10.09        39.58 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              7.76               0.20 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            215.44             345.96 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             48.59              47.38 
[1] "7.8 - 215.4 (48.6)" "0.2 - 346.0 (47.4)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GN-A26D 
"14Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GN-A26D 
"14Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GN-A26D 
"14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     13   26
  14Q LOSS WILD-TYPE   49   70
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               13                 49
  MALE                 26                 70
                    vv
clus                  M0  M1 M1A M1B M1C
  14Q LOSS MUTATED    33   0   1   0   2
  14Q LOSS WILD-TYPE 101   2   1   1   0
D60V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  14Q LOSS MUTATED   22  0   3   3  0   0   1   3  4  0
  14Q LOSS WILD-TYPE 65  2   4  10  1   3   9   2  8  2
D60V5, multiclass
D60V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  14Q LOSS MUTATED         4        1        3        8         0         1
  14Q LOSS WILD-TYPE      13        8       10       10         8         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  14Q LOSS MUTATED           3         1          2          3          6
  14Q LOSS WILD-TYPE         5         6          4         14         12
                    vv
clus                 STAGE IV
  14Q LOSS MUTATED          3
  14Q LOSS WILD-TYPE        2
D60V7, multiclass

Clustering(61) Variable = 15q loss mutation analysis
D61V1, survival
                    sevent
clus2                 0  1
  15Q LOSS MUTATED    5  6
  15Q LOSS WILD-TYPE 76 67
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                143 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 6                 67 
$`15Q LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D9-A148 TCGA-DA-A1I1 TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A2A5 
       58.03       148.31       194.83         2.56        56.42        39.25 
TCGA-EE-A2MK TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1ZM TCGA-GN-A266 
      144.76        48.59       202.62       101.26        10.09 

$`15Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        71.24         9.30        21.47        49.74         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        6.38        11.34         3.22        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q 
       13.97        39.62        32.19        44.35        18.58        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        24.43        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       12.59        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY 
       79.99        80.32        33.21        80.48       216.92       228.59 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       74.73        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       27.06        27.02        77.79        50.14        12.43        49.45 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        0.20        22.98        47.54        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              2.56               0.20 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            202.62             345.96 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             58.03              47.38 
[1] "2.6 - 202.6 (58.0)" "0.2 - 346.0 (47.4)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"15Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"15Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      5    6
  15Q LOSS WILD-TYPE   57   90
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE                5                 57
  MALE                  6                 90
                    vv
clus                  M0  M1 M1A M1B M1C
  15Q LOSS MUTATED     9   0   0   1   0
  15Q LOSS WILD-TYPE 125   2   2   0   2
D61V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  15Q LOSS MUTATED    6  0   0   0  0   0   0   1  3  0
  15Q LOSS WILD-TYPE 81  2   7  13  1   3  10   4  9  2
D61V5, multiclass
D61V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  15Q LOSS MUTATED         1        1        2        1         0         0
  15Q LOSS WILD-TYPE      16        8       11       17         8         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  15Q LOSS MUTATED           1         1          0          0          2
  15Q LOSS WILD-TYPE         7         6          6         17         16
                    vv
clus                 STAGE IV
  15Q LOSS MUTATED          0
  15Q LOSS WILD-TYPE        5
D61V7, multiclass

Clustering(62) Variable = 16p loss mutation analysis
D62V1, survival
                    sevent
clus2                 0  1
  16P LOSS MUTATED    4  8
  16P LOSS WILD-TYPE 77 65
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                142 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 8                 65 
$`16P LOSS MUTATED`
TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-EE-A17Z TCGA-EE-A29D TCGA-EE-A29X TCGA-EE-A2GC 
       36.03       176.55         8.65        13.97        17.92        43.23 
TCGA-EE-A2MK TCGA-FS-A1ZU TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 
      144.76        26.56        47.54       120.46       117.93        62.76 

$`16P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       194.83        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 
       37.35        14.47        55.89       345.96        25.87        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       12.59        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
       79.99        80.32        33.21        80.48       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38        23.93       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       53.16        49.48        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A265 
       12.43        49.45         0.20        22.98        76.41        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        32.48        39.58 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              8.65               0.20 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            176.55             345.96 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            45.385             47.690 
[1] "8.7 - 176.6 (45.4)" "0.2 - 346.0 (47.7)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"16P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"16P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"16P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      7    5
  16P LOSS WILD-TYPE   55   91
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE                7                 55
  MALE                  5                 91
                    vv
clus                  M0  M1 M1A M1B M1C
  16P LOSS MUTATED     9   0   0   0   0
  16P LOSS WILD-TYPE 125   2   2   1   2
D62V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  16P LOSS MUTATED    6  0   0   2  0   0   1   0  0  0
  16P LOSS WILD-TYPE 81  2   7  11  1   3   9   5 12  2
D62V5, multiclass
D62V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16P LOSS MUTATED         0        0        1        1         0         3
  16P LOSS WILD-TYPE      17        9       12       17         8         6
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  16P LOSS MUTATED           1         0          0          1          2
  16P LOSS WILD-TYPE         7         7          6         16         16
                    vv
clus                 STAGE IV
  16P LOSS MUTATED          0
  16P LOSS WILD-TYPE        5
D62V7, multiclass

Clustering(63) Variable = 16q loss mutation analysis
D63V1, survival
                    sevent
clus2                 0  1
  16Q LOSS MUTATED    9 19
  16Q LOSS WILD-TYPE 72 54
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                28                126 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                19                 54 
$`16Q LOSS MUTATED`
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1I4 
      148.31        49.74         3.22        36.03       176.55        35.93 
TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29X TCGA-EE-A2A5 
       15.68         8.65         4.93        13.97        17.92        39.25 
TCGA-EE-A2GC TCGA-EE-A2GP TCGA-EE-A2MD TCGA-EE-A2MK TCGA-EE-A3AF TCGA-FS-A1ZB 
       43.23        13.87        47.28       144.76        13.81        48.85 
TCGA-FS-A1ZF TCGA-FS-A1ZP TCGA-FS-A1ZU TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-FW-A3TU 
       15.45        74.73        26.56        50.14         0.20        47.54 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        64.41        62.76 

$`16Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A1JW 
      121.22        58.03        71.24         9.30        21.47         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        6.38        11.34        48.89       117.17        20.38       194.83 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 
       28.60        10.49       215.44        29.82        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
       26.86       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 
       37.35        14.47        55.89       345.96        25.87        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE 
       78.94        24.43        58.75        47.54       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       90.94       101.95        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME 
       21.67       129.24        28.80        19.76        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM 
      103.17        16.96       204.62        96.23       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
       61.05        44.05        79.99        80.32        33.21        80.48 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZH 
        7.76        27.68        53.52        40.27         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       47.38        23.93       101.26        11.41       148.77        53.16 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC 
       49.48        27.06        27.02        77.79        12.43        49.45 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26A TCGA-GN-A26D 
       22.98        76.41        84.72        10.09        32.48        39.58 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.20               2.56 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            176.55             345.96 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             41.24              48.74 
[1] "0.2 - 176.6 (41.2)" "2.6 - 346.0 (48.7)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"16Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"16Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"16Q LOSS WILD-TYPE" 
[1] "hr=" "2.1"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     13   15
  16Q LOSS WILD-TYPE   49   81
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               13                 49
  MALE                 15                 81
                    vv
clus                  M0  M1 M1A M1B M1C
  16Q LOSS MUTATED    22   1   0   1   0
  16Q LOSS WILD-TYPE 112   1   2   0   2
D63V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  16Q LOSS MUTATED   13  0   2   4  0   0   3   0  2  0
  16Q LOSS WILD-TYPE 74  2   5   9  1   3   7   5 10  2
D63V5, multiclass
D63V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16Q LOSS MUTATED         0        0        2        4         0         3
  16Q LOSS WILD-TYPE      17        9       11       14         8         6
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  16Q LOSS MUTATED           3         0          1          5          3
  16Q LOSS WILD-TYPE         5         7          5         12         15
                    vv
clus                 STAGE IV
  16Q LOSS MUTATED          1
  16Q LOSS WILD-TYPE        4
D63V7, multiclass

Clustering(64) Variable = 17p loss mutation analysis
D64V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED   19 17
  17P LOSS WILD-TYPE 62 56
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                36                118 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                17                 56 
$`17P LOSS MUTATED`
TCGA-D3-A3MO TCGA-D9-A148 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A3F3 
        9.30       148.31        48.89        36.03       117.17        10.49 
TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29S TCGA-EE-A29T 
        4.93        47.84        32.19        44.35        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GC 
       25.87        17.92        78.94        24.43        39.25        43.23 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GP TCGA-EE-A2GT TCGA-EE-A2M6 TCGA-EE-A2MD 
       22.55        89.33        13.87        19.56       129.24        47.28 
TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-FR-A3YN TCGA-FS-A1YX TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       47.54        43.23        80.48        48.59        32.71        47.38 
TCGA-FS-A1ZY TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A266 
       27.06        50.14        12.43         0.20        22.98        10.09 

$`17P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        58.03        71.24        21.47        49.74         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        6.38        11.34         3.22        20.38       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       35.93       107.34        61.18        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       68.09        28.60       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       33.73        14.70        26.86       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       63.32        13.97        39.62         2.56        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       37.35        14.47        46.82        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      135.91       182.01        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 
      101.95        14.30        55.59        67.13        21.67        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       19.76        61.51       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MR 
       96.23       144.76       203.01       167.87       248.61       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32        33.21       216.92       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
       15.45         9.70        23.93       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FS-A4F0 
      148.77        53.16        26.56        49.48        27.02        77.79 
TCGA-FS-A4FC TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       49.45        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.20               2.56 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            345.96             314.53 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             41.24              53.21 
[1] "0.2 - 346.0 (41.2)" "2.6 - 314.5 (53.2)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"17P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"17P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"17P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     13   24
  17P LOSS WILD-TYPE   49   72
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               13                 49
  MALE                 24                 72
                    vv
clus                  M0  M1 M1A M1B M1C
  17P LOSS MUTATED    32   1   0   1   1
  17P LOSS WILD-TYPE 102   1   2   0   1
D64V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  17P LOSS MUTATED   20  0   1   3  1   1   2   2  4  1
  17P LOSS WILD-TYPE 67  2   6  10  0   2   8   3  8  1
D64V5, multiclass
D64V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17P LOSS MUTATED         4        3        6        1         2         2
  17P LOSS WILD-TYPE      13        6        7       17         6         7
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  17P LOSS MUTATED           1         2          1          5          4
  17P LOSS WILD-TYPE         7         5          5         12         14
                    vv
clus                 STAGE IV
  17P LOSS MUTATED          2
  17P LOSS WILD-TYPE        3
D64V7, multiclass

Clustering(65) Variable = 17q loss mutation analysis
D65V1, survival
                    sevent
clus2                 0  1
  17Q LOSS MUTATED    7  8
  17Q LOSS WILD-TYPE 74 65
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                15                139 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 8                 65 
$`17Q LOSS MUTATED`
TCGA-DA-A1HW TCGA-EE-A29C TCGA-EE-A29X TCGA-EE-A2A5 TCGA-EE-A2GI TCGA-EE-A2GP 
       36.03        47.84        17.92        39.25        22.55        13.87 
TCGA-EE-A2GT TCGA-EE-A2M6 TCGA-EE-A2MQ TCGA-ER-A19L TCGA-FS-A1ZH TCGA-FS-A4F2 
       19.56       129.24        43.23       131.08        32.71        50.14 
TCGA-FS-A4F9 TCGA-FW-A3I3 TCGA-FW-A3R5 
       12.43         0.20        22.98 

$`17Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       63.32        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB 
       25.87        46.82        78.94        24.43        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK 
       43.23       314.53       135.91       182.01        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS 
       55.00        75.48        90.94       101.95        14.30        55.59 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       67.13        21.67        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS 
      203.01       167.87        47.54       248.61       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
        6.41        61.05        44.05        79.99        80.32        33.21 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.48       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4FC TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       27.02        77.79        49.45        47.54        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.20               2.56 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            131.08             345.96 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             32.71              48.89 
[1] "0.2 - 131.1 (32.7)" "2.6 - 346.0 (48.9)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"17Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"17Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"17Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      6   10
  17Q LOSS WILD-TYPE   56   86
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                6                 56
  MALE                 10                 86
                    vv
clus                  M0  M1 M1A M1B M1C
  17Q LOSS MUTATED    12   1   0   0   1
  17Q LOSS WILD-TYPE 122   1   2   1   1
D65V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  17Q LOSS MUTATED    8  0   1   1  1   1   0   1  1  0
  17Q LOSS WILD-TYPE 79  2   6  12  0   2  10   4 11  2
D65V5, multiclass
D65V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17Q LOSS MUTATED         1        1        3        0         1         0
  17Q LOSS WILD-TYPE      16        8       10       18         7         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  17Q LOSS MUTATED           1         1          1          2          1
  17Q LOSS WILD-TYPE         7         6          5         15         17
                    vv
clus                 STAGE IV
  17Q LOSS MUTATED          2
  17Q LOSS WILD-TYPE        3
D65V7, multiclass

Clustering(66) Variable = 18p loss mutation analysis
D66V1, survival
                    sevent
clus2                 0  1
  18P LOSS MUTATED   18 13
  18P LOSS WILD-TYPE 63 60
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                31                123 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                13                 60 
$`18P LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A3F5 
       58.03         6.38        48.89       176.55        61.18       215.44 
TCGA-EE-A20B TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29M TCGA-EE-A29T TCGA-EE-A29V 
      109.64        63.32        13.97        44.35       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2GI TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2MK TCGA-EE-A2MM 
       17.92        22.55        13.87        14.30       144.76       167.87 
TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3AH 
       43.23       136.44         3.68        26.73        23.47       138.77 
TCGA-FS-A1ZA TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A1ZY 
       27.68       101.26        11.41       148.77        49.48        27.06 
TCGA-FW-A3TU 
       47.54 

$`18P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        71.24         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70        11.34         3.22        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
      194.83        35.93       107.34        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       68.09        28.60        10.49        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20H 
       33.73        14.70        26.86         4.93        78.87       168.26 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       47.84        39.62        32.19         2.56        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       37.35        14.47        55.89        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
      101.95        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP 
       16.96       204.62        96.23       203.01        47.54       248.61 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AF TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       13.81        12.59        26.37         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
       44.05        79.99        80.32        33.21        80.48       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZZ 
       47.38        23.93        74.73        53.16        26.56        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              3.68               0.20 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            345.96             314.53 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             47.54              47.54 
[1] "3.7 - 346.0 (47.5)" "0.2 - 314.5 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"18P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"18P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"18P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     13   19
  18P LOSS WILD-TYPE   49   77
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               13                 49
  MALE                 19                 77
                    vv
clus                  M0  M1 M1A M1B M1C
  18P LOSS MUTATED    28   0   0   0   0
  18P LOSS WILD-TYPE 106   2   2   1   2
D66V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  18P LOSS MUTATED   14  0   3   2  0   1   3   2  1  2
  18P LOSS WILD-TYPE 73  2   4  11  1   2   7   3 11  0
D66V5, multiclass
D66V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18P LOSS MUTATED         1        2        3        7         0         1
  18P LOSS WILD-TYPE      16        7       10       11         8         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  18P LOSS MUTATED           0         1          2          5          4
  18P LOSS WILD-TYPE         8         6          4         12         14
                    vv
clus                 STAGE IV
  18P LOSS MUTATED          0
  18P LOSS WILD-TYPE        5
D66V7, multiclass

Clustering(67) Variable = 18q loss mutation analysis
D67V1, survival
                    sevent
clus2                 0  1
  18Q LOSS MUTATED   16 11
  18Q LOSS WILD-TYPE 65 62
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                27                127 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                11                 62 
$`18Q LOSS MUTATED`
TCGA-D3-A3C6 TCGA-D9-A148 TCGA-DA-A1HV TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1IA 
       58.03       148.31        48.89       176.55        61.18        65.92 
TCGA-DA-A3F5 TCGA-EE-A20B TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29M TCGA-EE-A29T 
      215.44       109.64        63.32        13.97        44.35       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2GI TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2MK 
       25.87        17.92        22.55        13.87        14.30       144.76 
TCGA-EE-A2MQ TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AH TCGA-FS-A1ZM TCGA-FS-A1ZS 
       43.23         3.68        26.73       138.77       101.26       148.77 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3TU 
       49.48        27.06        47.54 

$`18Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW 
      121.22        71.24         9.30        21.47        49.74         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        6.38        11.34         3.22        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
      194.83        35.93       107.34        53.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       28.60        10.49        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C 
       14.70        26.86         4.93        78.87       168.26        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       39.62        32.19         2.56        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       14.47        55.89        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62        96.23       203.01       167.87        47.54       248.61 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.84        13.81        23.47        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
      131.08        61.05        44.05        79.99        80.32        33.21 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.48       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP 
       15.45         9.70        32.71        47.38        23.93        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       11.41        53.16        26.56        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
       12.43        49.45         0.20        22.98        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              3.68               0.20 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            345.96             314.53 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             49.48              47.38 
[1] "3.7 - 346.0 (49.5)" "0.2 - 314.5 (47.4)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"18Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"18Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"18Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     11   17
  18Q LOSS WILD-TYPE   51   79
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               11                 51
  MALE                 17                 79
                    vv
clus                  M0  M1 M1A M1B M1C
  18Q LOSS MUTATED    24   0   0   1   0
  18Q LOSS WILD-TYPE 110   2   2   0   2
D67V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  18Q LOSS MUTATED   11  0   3   3  0   1   3   1  2  1
  18Q LOSS WILD-TYPE 76  2   4  10  1   2   7   4 10  1
D67V5, multiclass
D67V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18Q LOSS MUTATED         0        2        3        5         0         1
  18Q LOSS WILD-TYPE      17        7       10       13         8         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  18Q LOSS MUTATED           0         1          2          5          4
  18Q LOSS WILD-TYPE         8         6          4         12         14
                    vv
clus                 STAGE IV
  18Q LOSS MUTATED          0
  18Q LOSS WILD-TYPE        5
D67V7, multiclass

Clustering(68) Variable = 19p loss mutation analysis
D68V1, survival
                    sevent
clus2                 0  1
  19P LOSS MUTATED    6  5
  19P LOSS WILD-TYPE 75 68
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                11                143 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 5                 68 
$`19P LOSS MUTATED`
TCGA-D9-A148 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I8 TCGA-EE-A29H 
      148.31         3.22        48.89        36.03        53.92        32.19 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2GM TCGA-FS-A1ZH TCGA-FS-A1ZW 
       17.92        46.82        75.48        32.71        49.48 

$`19P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 
      121.22        58.03        71.24         9.30        21.47        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.70         6.38        11.34       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A1IB 
      176.55        35.93       107.34        61.18        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       68.09        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       55.89       345.96        25.87        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO 
       22.55        89.33        54.71        55.00        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        6.41       131.08        61.05        44.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       33.21        80.48       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       40.27        15.45         9.70        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY 
       74.73        11.41       148.77        53.16        26.56        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.02        77.79        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       22.98        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              3.22               0.20 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            148.31             345.96 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             46.82              47.54 
[1] "3.2 - 148.3 (46.8)" "0.2 - 346.0 (47.5)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"19P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"19P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"19P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      9    4
  19P LOSS WILD-TYPE   53   92
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE                9                 53
  MALE                  4                 92
                    vv
clus                  M0  M1 M1A M1B M1C
  19P LOSS MUTATED    10   0   0   1   1
  19P LOSS WILD-TYPE 124   2   2   0   1
D68V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  19P LOSS MUTATED    4  0   1   2  0   0   2   1  2  0
  19P LOSS WILD-TYPE 83  2   6  11  1   3   8   4 10  2
D68V5, multiclass
D68V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19P LOSS MUTATED         0        1        1        0         1         0
  19P LOSS WILD-TYPE      17        8       12       18         7         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  19P LOSS MUTATED           1         1          0          4          1
  19P LOSS WILD-TYPE         7         6          6         13         17
                    vv
clus                 STAGE IV
  19P LOSS MUTATED          1
  19P LOSS WILD-TYPE        4
D68V7, multiclass

Clustering(69) Variable = 19q loss mutation analysis
D69V1, survival
                    sevent
clus2                 0  1
  19Q LOSS MUTATED   10  4
  19Q LOSS WILD-TYPE 71 69
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                14                140 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                 69 
$`19Q LOSS MUTATED`
TCGA-D9-A148 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1I8 TCGA-EE-A29H TCGA-EE-A29M 
      148.31         3.22        48.89        53.92        32.19        44.35 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A3AD TCGA-EE-A3AG TCGA-FS-A1ZH TCGA-FS-A1ZW 
       55.89        17.92         3.68        23.47        32.71        49.48 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

$`19Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 
      121.22        58.03        71.24         9.30        21.47        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        11.34        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1IA 
      194.83       176.55        35.93       107.34        61.18        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       39.62         2.56        18.58        56.42        37.35        14.47 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
      345.96        25.87        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       26.73        13.81       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
      131.08        61.05        44.05        79.99        80.32        33.21 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.48       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        53.16        26.56        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       47.54        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 
       64.41        62.76 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              3.22               0.20 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            148.31             345.96 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            36.145             48.215 
[1] "3.2 - 148.3 (36.1)" "0.2 - 346.0 (48.2)"
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-GN-A26D 
  "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-GN-A26D 
  "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-GN-A26D 
  "19Q LOSS MUTATED" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      9    6
  19Q LOSS WILD-TYPE   53   90
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                9                 53
  MALE                  6                 90
                    vv
clus                  M0  M1 M1A M1B M1C
  19Q LOSS MUTATED    10   0   0   1   1
  19Q LOSS WILD-TYPE 124   2   2   0   1
D69V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  19Q LOSS MUTATED    5  0   2   1  0   0   2   1  2  0
  19Q LOSS WILD-TYPE 82  2   5  12  1   3   8   4 10  2
D69V5, multiclass
D69V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19Q LOSS MUTATED         0        1        2        0         1         0
  19Q LOSS WILD-TYPE      17        8       11       18         7         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  19Q LOSS MUTATED           1         1          1          3          1
  19Q LOSS WILD-TYPE         7         6          5         14         17
                    vv
clus                 STAGE IV
  19Q LOSS MUTATED          1
  19Q LOSS WILD-TYPE        4
D69V7, multiclass

Clustering(70) Variable = 20p loss mutation analysis
D70V1, survival
                    sevent
clus2                 0  1
  20P LOSS MUTATED    5  1
  20P LOSS WILD-TYPE 76 72
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 6                148 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 1                 72 
$`20P LOSS MUTATED`
TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-EE-A29E TCGA-ER-A3PL TCGA-FS-A1ZE TCGA-FS-A1ZR 
       48.89       194.83        39.62        33.21        40.27        11.41 

$`20P LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW 
       49.74         2.70         6.38        11.34         3.22        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        6.41       131.08        61.05        44.05        79.99        80.32 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.48       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZF 
       28.08         7.76        27.68        48.85        53.52        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
       47.54        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             11.41               0.20 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            194.83             345.96 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            39.945             47.690 
[1] "11.4 - 194.8 (39.9)" "0.2 - 346.0 (47.7)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"20P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"20P LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"20P LOSS WILD-TYPE" 
[1] "hr=" "2.7"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1    5
  20P LOSS WILD-TYPE   61   91
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                1                 61
  MALE                  5                 91
                    vv
clus                  M0  M1 M1A M1B M1C
  20P LOSS MUTATED     5   0   1   0   0
  20P LOSS WILD-TYPE 129   2   1   1   2
D70V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  20P LOSS MUTATED    3  0   0   1  0   0   1   0  1  0
  20P LOSS WILD-TYPE 84  2   7  12  1   3   9   5 11  2
D70V5, multiclass
D70V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20P LOSS MUTATED         0        0        0        1         0         0
  20P LOSS WILD-TYPE      17        9       13       17         8         9
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  20P LOSS MUTATED           1         0          0          2          1
  20P LOSS WILD-TYPE         7         7          6         15         17
                    vv
clus                 STAGE IV
  20P LOSS MUTATED          1
  20P LOSS WILD-TYPE        4
D70V7, multiclass

Clustering(71) Variable = 21q loss mutation analysis
D71V1, survival
                    sevent
clus2                 0  1
  21Q LOSS MUTATED   11  9
  21Q LOSS WILD-TYPE 70 64
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                20                134 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 9                 64 
$`21Q LOSS MUTATED`
TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A29H TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB 
       33.73       109.64        32.19        24.43        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2MK TCGA-EE-A2MN 
       43.23        22.55       101.95        21.67       144.76        47.54 
TCGA-EE-A2MS TCGA-EE-A3AH TCGA-FS-A1ZA TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZU 
      136.44       138.77        27.68        40.27         9.70        26.56 
TCGA-GN-A266 TCGA-GN-A268 
       10.09        62.76 

$`21Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       49.74         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       36.03       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       14.70        26.86         4.93        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        39.62         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE 
       17.92        46.82        78.94        39.25       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 
       13.87        14.30        55.59        19.56        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP 
       16.96       204.62        96.23       203.01       167.87       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
       43.23       103.56        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A19D 
       25.84         3.68        26.73        13.81        23.47        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       80.32        33.21        80.48       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD 
      202.62        20.91        28.08         7.76        48.85        53.52 
TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        53.16        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
       47.54        76.41       120.46       117.93        84.72        64.41 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               9.7                0.2 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            144.76             345.96 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             41.75              48.72 
[1] "9.7 - 144.8 (41.8)" "0.2 - 346.0 (48.7)"
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"21Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"21Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      9   11
  21Q LOSS WILD-TYPE   53   85
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE                9                 53
  MALE                 11                 85
                    vv
clus                  M0  M1 M1A M1B M1C
  21Q LOSS MUTATED    19   0   0   0   0
  21Q LOSS WILD-TYPE 115   2   2   1   2
D71V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  21Q LOSS MUTATED   15  0   1   1  0   0   1   1  0  0
  21Q LOSS WILD-TYPE 72  2   6  12  1   3   9   4 12  2
D71V5, multiclass
D71V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  21Q LOSS MUTATED         2        3        0        6         0         2
  21Q LOSS WILD-TYPE      15        6       13       12         8         7
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  21Q LOSS MUTATED           2         0          1          2          1
  21Q LOSS WILD-TYPE         6         7          5         15         17
                    vv
clus                 STAGE IV
  21Q LOSS MUTATED          0
  21Q LOSS WILD-TYPE        5
D71V7, multiclass

Clustering(72) Variable = 22q loss mutation analysis
D72V1, survival
                    sevent
clus2                 0  1
  22Q LOSS MUTATED    4  7
  22Q LOSS WILD-TYPE 77 66
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                11                143 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 7                 66 
$`22Q LOSS MUTATED`
TCGA-D9-A149 TCGA-DA-A1I2 TCGA-EE-A29C TCGA-EE-A2A6 TCGA-EE-A2GP TCGA-EE-A2MM 
       49.74       176.55        47.84        58.75        13.87       167.87 
TCGA-ER-A19D TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1ZJ TCGA-FS-A4F0 
       12.59       216.92        48.59        47.38        77.79 

$`22Q LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
      121.22        58.03        71.24         9.30        21.47       148.31 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       194.83        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB 
       17.92        46.82        78.94        24.43        39.25        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR 
       54.71        55.00        75.48        90.94       101.95        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62        96.23       144.76       203.01        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
      138.77        26.37         6.41       131.08        61.05        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32        33.21        80.48       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZM 
       40.27        15.45         9.70        32.71        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       74.73        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       27.06        27.02        50.14        12.43        49.45         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       22.98        47.54        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             12.59               0.20 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            216.92             345.96 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             49.74              47.28 
[1] "12.6 - 216.9 (49.7)" "0.2 - 346.0 (47.3)" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"22Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"22Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A3C6         TCGA-D3-A3CC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EE-A2GB         TCGA-EE-A2GC         TCGA-EE-A2GD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GE         TCGA-EE-A2GH         TCGA-EE-A2GI 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GJ         TCGA-EE-A2GK         TCGA-EE-A2GL 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GM         TCGA-EE-A2GN         TCGA-EE-A2GO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M7         TCGA-EE-A2M8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ME 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MG         TCGA-EE-A2MH         TCGA-EE-A2MI 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AB         TCGA-EE-A3AC         TCGA-EE-A3AD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AF         TCGA-EE-A3AG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-ER-A3PL         TCGA-FR-A3YN         TCGA-FS-A1YW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FS-A1YX         TCGA-FS-A1YY         TCGA-FS-A1Z0 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1Z4         TCGA-FS-A1Z7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZB         TCGA-FS-A1ZD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZS         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-FS-A1ZY         TCGA-FS-A1ZZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A4F0         TCGA-FS-A4F2         TCGA-FS-A4F9 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FS-A4FC         TCGA-FW-A3I3         TCGA-FW-A3R5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FW-A3TU         TCGA-GN-A261         TCGA-GN-A262 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      6    5
  22Q LOSS WILD-TYPE   56   91
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE                6                 56
  MALE                  5                 91
                    vv
clus                  M0  M1 M1A M1B M1C
  22Q LOSS MUTATED    11   0   0   0   0
  22Q LOSS WILD-TYPE 123   2   2   1   2
D72V4, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  22Q LOSS MUTATED    8  0   1   1  0   0   1   0  0  0
  22Q LOSS WILD-TYPE 79  2   6  12  1   3   9   5 12  2
D72V5, multiclass
D72V6, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  22Q LOSS MUTATED         3        1        3        0         0         1
  22Q LOSS WILD-TYPE      14        8       10       18         8         8
                    vv
clus                 STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  22Q LOSS MUTATED           0         0          0          1          1
  22Q LOSS WILD-TYPE         8         7          6         16         17
                    vv
clus                 STAGE IV
  22Q LOSS MUTATED          0
  22Q LOSS WILD-TYPE        5
D72V7, multiclass

Clustering(73) Variable = Xq loss mutation analysis
D73V1, survival
                   sevent
clus2                0  1
  XQ LOSS MUTATED    2  3
  XQ LOSS WILD-TYPE 79 70
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                5               149 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                70 
$`XQ LOSS MUTATED`
TCGA-D3-A3C6 TCGA-DA-A1I8 TCGA-EE-A29H TCGA-FS-A1ZJ TCGA-GN-A262 
       58.03        53.92        32.19        47.38       120.46 

$`XQ LOSS WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
      121.22        71.24         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       61.18        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        39.62         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        6.41       131.08        61.05        44.05        79.99        80.32 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       33.21        80.48       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZM 
       40.27        15.45         9.70        32.71        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       74.73        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       27.06        27.02        77.79        50.14        12.43        49.45 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 
        0.20        22.98        47.54        76.41       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            32.19              0.20 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           120.46            345.96 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            53.92             47.54 
[1] "32.2 - 120.5 (53.9)" "0.2 - 346.0 (47.5)" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D3-A1Q7        TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3MO 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149        TCGA-D9-A1JW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A3AB        TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EE-A3AF        TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19M 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-ER-A3PL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FR-A3YN        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FS-A4F0        TCGA-FS-A4F2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FS-A4F9        TCGA-FS-A4FC        TCGA-FW-A3I3        TCGA-FW-A3R5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FW-A3TU        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      5    1
  XQ LOSS WILD-TYPE   57   95
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               5                57
  MALE                 1                95
                   vv
clus                 M0  M1 M1A M1B M1C
  XQ LOSS MUTATED     4   0   0   0   0
  XQ LOSS WILD-TYPE 130   2   2   1   2
D73V4, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  XQ LOSS MUTATED    3  0   0   0  0   0   0   0  1  0
  XQ LOSS WILD-TYPE 84  2   7  13  1   3  10   5 11  2
D73V5, multiclass
D73V6, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  XQ LOSS MUTATED         1        1        1        0         0         0
  XQ LOSS WILD-TYPE      16        8       12       18         8         9
                   vv
clus                STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  XQ LOSS MUTATED           0         0          0          0          1
  XQ LOSS WILD-TYPE         8         7          6         17         17
                   vv
clus                STAGE IV
  XQ LOSS MUTATED          0
  XQ LOSS WILD-TYPE        5
D73V7, multiclass
                   V1.D                      V2                      V3 
        "Time to Death"                   "AGE"                "GENDER" 
                     V4                      V5                      V6 
   "DISTANT.METASTASIS" "LYMPH.NODE.METASTASIS"       "TUMOR.STAGECODE" 
                     V7 
"NEOPLASM.DISEASESTAGE" 
> q(save="no")
