
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/375956/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SKCM-TM/2908175/1.GDAC_mergedClustering.Finished/SKCM-TM.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-TM", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SKCM-TM"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=260, in cluster file=244, common to both=244
[1] "Reduce the number of clustering variables from 80 to 78."
[1]  78 244
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               28               216 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               28               216 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               77               167 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               77               167 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               214 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               214 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               28               216 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               28               216 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               23               221 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               23               221 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               30               214 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               30               214 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               24               220 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               24               220 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               20               224 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               20               224 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               28               216 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               28               216 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               14               230 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               14               230 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               76               168 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               76               168 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               18               226 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               18               226 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              101               143 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              101               143 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              104               140 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              104               140 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               49               195 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               49               195 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               78               166 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               78               166 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                9               235 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                9               235 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               10               234 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               10               234 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                227 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                227 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                15                229 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                15                229 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                23                221 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                23                221 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                11                233 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                11                233 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                39                205 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                39                205 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                16                228 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                16                228 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                35                209 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                35                209 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                16                228 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                16                228 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                15                229 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                15                229 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                16                228 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                16                228 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                28                216 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                28                216 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                27                217 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                27                217 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                16                228 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                16                228 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                16                228 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                16                228 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                20                224 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                20                224 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                70                174 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                70                174 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                89                155 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                89                155 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                29                215 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                29                215 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                59                185 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                59                185 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                4               240 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                4               240 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               15               229 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               15               229 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               237 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               237 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               18               226 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               18               226 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               19               225 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               19               225 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               22               222 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               22               222 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               19               225 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               19               225 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               30               214 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               30               214 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               31               213 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               31               213 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               32               212 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               32               212 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               46               198 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               46               198 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               28               216 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               28               216 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               90               154 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               90               154 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                7               237 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                7               237 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               238 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               238 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               28               216 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               28               216 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5               239 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5               239 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              134               110 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              134               110 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              100               144 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              100               144 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               103                141 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               103                141 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               112                132 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               112                132 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                57                187 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                57                187 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                64                180 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                64                180 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                15                229 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                15                229 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                24                220 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                24                220 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                36                208 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                36                208 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                54                190 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                54                190 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                15                229 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                15                229 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                22                222 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                22                222 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                46                198 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                46                198 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                50                194 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                50                194 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                22                222 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                22                222 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                48                196 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                48                196 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                44                200 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                44                200 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                19                225 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                19                225 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                19                225 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                19                225 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                12                232 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                12                232 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                241 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                241 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                28                216 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                28                216 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                19                225 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                19                225 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               10               234 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               10               234 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 244 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 244 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              16                64
  CLUS_2               7                62
  CLUS_3               5                90
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               8                53
  CLUS_2              13                76
  CLUS_3               7                87
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                35
  CLUS_2               1                22
  CLUS_3               2                32
  CLUS_4               9                35
D1V4, multiclass
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              10                71
  CLUS_2               3                64
  CLUS_3              13                71
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               8                51
  CLUS_2              11               105
  CLUS_3               7                50
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                42
  CLUS_2              12                86
  CLUS_3              10                80
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               4                58
  CLUS_3              21               126

Clustering(2) Variable = 1q gain mutation analysis
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              46                34
  CLUS_2              16                53
  CLUS_3              15                80
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              29                32
  CLUS_2              25                64
  CLUS_3              23                71
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              14                28
  CLUS_2               4                19
  CLUS_3              11                23
  CLUS_4              17                27
D2V4, multiclass
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              24                57
  CLUS_2              15                52
  CLUS_3              33                51
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              17                42
  CLUS_2              33                83
  CLUS_3              22                35
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              15                32
  CLUS_2              37                61
  CLUS_3              23                67
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               6                20
  CLUS_2              14                48
  CLUS_3              55                92

Clustering(3) Variable = 2p gain mutation analysis
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              12                68
  CLUS_2              14                55
  CLUS_3               4                91
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                50
  CLUS_2              10                79
  CLUS_3               9                85
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               9                33
  CLUS_2               0                23
  CLUS_3               3                31
  CLUS_4               6                38
D3V4, multiclass
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              16                65
  CLUS_2               3                64
  CLUS_3              10                74
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              13                46
  CLUS_2               9               107
  CLUS_3               7                50
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                43
  CLUS_2               9                89
  CLUS_3              16                74
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                23
  CLUS_2              14                48
  CLUS_3              12               135

Clustering(4) Variable = 2q gain mutation analysis
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9                71
  CLUS_2              15                54
  CLUS_3               4                91
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9                52
  CLUS_2              11                78
  CLUS_3               8                86
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              10                32
  CLUS_2               0                23
  CLUS_3               2                32
  CLUS_4               5                39
D4V4, multiclass
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              17                64
  CLUS_2               3                64
  CLUS_3               7                77
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              14                45
  CLUS_2               8               108
  CLUS_3               5                52
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                43
  CLUS_2               6                92
  CLUS_3              17                73
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               3                23
  CLUS_2              14                48
  CLUS_3              10               137

Clustering(5) Variable = 3p gain mutation analysis
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              11                69
  CLUS_2               8                61
  CLUS_3               4                91
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               8                53
  CLUS_2              11                78
  CLUS_3               4                90
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                38
  CLUS_2               2                21
  CLUS_3               3                31
  CLUS_4               4                40
D5V4, multiclass
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              10                71
  CLUS_2               3                64
  CLUS_3               8                76
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               9                50
  CLUS_2               6               110
  CLUS_3               6                51
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                44
  CLUS_2              12                86
  CLUS_3               7                83
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               3                59
  CLUS_3              17               130

Clustering(6) Variable = 3q gain mutation analysis
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              12                68
  CLUS_2              11                58
  CLUS_3               7                88
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              10                51
  CLUS_2              13                76
  CLUS_3               7                87
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               8                34
  CLUS_2               2                21
  CLUS_3               4                30
  CLUS_4               4                40
D6V4, multiclass
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              14                67
  CLUS_2               5                62
  CLUS_3               9                75
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              10                49
  CLUS_2              10               106
  CLUS_3               8                49
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                41
  CLUS_2              13                85
  CLUS_3              10                80
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                22
  CLUS_2               5                57
  CLUS_3              20               127

Clustering(7) Variable = 4p gain mutation analysis
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              13                67
  CLUS_2               9                60
  CLUS_3               2                93
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8                53
  CLUS_2              12                77
  CLUS_3               4                90
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                38
  CLUS_2               2                21
  CLUS_3               4                30
  CLUS_4               4                40
D7V4, multiclass
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8                73
  CLUS_2               5                62
  CLUS_3               9                75
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                55
  CLUS_2              12               104
  CLUS_3               6                51
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6                41
  CLUS_2               9                89
  CLUS_3               8                82
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               5                57
  CLUS_3              16               131

Clustering(8) Variable = 4q gain mutation analysis
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              12                68
  CLUS_2               7                62
  CLUS_3               1                94
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               5                56
  CLUS_2              12                77
  CLUS_3               3                91
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                38
  CLUS_2               2                21
  CLUS_3               2                32
  CLUS_4               3                41
D8V4, multiclass
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               6                75
  CLUS_2               4                63
  CLUS_3              10                74
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3                56
  CLUS_2              11               105
  CLUS_3               6                51
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               6                41
  CLUS_2               9                89
  CLUS_3               5                85
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               4                58
  CLUS_3              14               133

Clustering(9) Variable = 5p gain mutation analysis
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              12                68
  CLUS_2              12                57
  CLUS_3               4                91
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               8                53
  CLUS_2              13                76
  CLUS_3               7                87
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                39
  CLUS_2               3                20
  CLUS_3               5                29
  CLUS_4               5                39
D9V4, multiclass
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              10                71
  CLUS_2               7                60
  CLUS_3              11                73
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               6                53
  CLUS_2              14               102
  CLUS_3               8                49
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               9                38
  CLUS_2              11                87
  CLUS_3               7                83
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                22
  CLUS_2               7                55
  CLUS_3              16               131

Clustering(10) Variable = 5q gain mutation analysis
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8                72
  CLUS_2               5                64
  CLUS_3               1                94
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                57
  CLUS_2               7                82
  CLUS_3               3                91
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                40
  CLUS_2               1                22
  CLUS_3               3                31
  CLUS_4               1                43
D10V4, multiclass
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               5                76
  CLUS_2               2                65
  CLUS_3               7                77
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                56
  CLUS_2               6               110
  CLUS_3               5                52
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                44
  CLUS_2               8                90
  CLUS_3               2                88
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                60
  CLUS_3              11               136

Clustering(11) Variable = 6p gain mutation analysis
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              48                32
  CLUS_2              12                57
  CLUS_3              16                79
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              31                30
  CLUS_2              30                59
  CLUS_3              15                79
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               8                34
  CLUS_2               7                16
  CLUS_3              15                19
  CLUS_4              17                27
D11V4, multiclass
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              26                55
  CLUS_2              17                50
  CLUS_3              32                52
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              15                44
  CLUS_2              34                82
  CLUS_3              26                31
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              12                35
  CLUS_2              42                56
  CLUS_3              21                69
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                19
  CLUS_2               9                53
  CLUS_3              59                88

Clustering(12) Variable = 6q gain mutation analysis
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               9                71
  CLUS_2               3                66
  CLUS_3               6                89
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               9                52
  CLUS_2               4                85
  CLUS_3               5                89
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                39
  CLUS_2               2                21
  CLUS_3               3                31
  CLUS_4               4                40
D12V4, multiclass
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8                73
  CLUS_2               4                63
  CLUS_3               5                79
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                54
  CLUS_2               6               110
  CLUS_3               6                51
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                45
  CLUS_2               8                90
  CLUS_3               7                83
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                59
  CLUS_3              13               134

Clustering(13) Variable = 7p gain mutation analysis
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              35                45
  CLUS_2              48                21
  CLUS_3              18                77
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              28                33
  CLUS_2              42                47
  CLUS_3              31                63
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              23                19
  CLUS_2               9                14
  CLUS_3              15                19
  CLUS_4              14                30
D13V4, multiclass
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              48                33
  CLUS_2              20                47
  CLUS_3              30                54
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              30                29
  CLUS_2              40                76
  CLUS_3              28                29
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                26
  CLUS_2              39                59
  CLUS_3              38                52
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              13                13
  CLUS_2              28                34
  CLUS_3              57                90

Clustering(14) Variable = 7q gain mutation analysis
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              30                50
  CLUS_2              53                16
  CLUS_3              21                74
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              27                34
  CLUS_2              43                46
  CLUS_3              34                60
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              23                19
  CLUS_2              10                13
  CLUS_3              14                20
  CLUS_4              13                31
D14V4, multiclass
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              50                31
  CLUS_2              22                45
  CLUS_3              29                55
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              33                26
  CLUS_2              42                74
  CLUS_3              26                31
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              24                23
  CLUS_2              37                61
  CLUS_3              40                50
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              15                11
  CLUS_2              30                32
  CLUS_3              56                91

Clustering(15) Variable = 8p gain mutation analysis
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              17                63
  CLUS_2              29                40
  CLUS_3               3                92
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              19                42
  CLUS_2              19                70
  CLUS_3              11                83
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              13                29
  CLUS_2               2                21
  CLUS_3               3                31
  CLUS_4               9                35
D15V4, multiclass
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              25                56
  CLUS_2               7                60
  CLUS_3              16                68
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              17                42
  CLUS_2              16               100
  CLUS_3              15                42
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                38
  CLUS_2              18                80
  CLUS_3              21                69
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                23
  CLUS_2              15                47
  CLUS_3              30               117

Clustering(16) Variable = 8q gain mutation analysis
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              35                45
  CLUS_2              34                35
  CLUS_3               9                86
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              34                27
  CLUS_2              25                64
  CLUS_3              19                75
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              16                26
  CLUS_2               5                18
  CLUS_3              10                24
  CLUS_4              14                30
D16V4, multiclass
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              36                45
  CLUS_2              10                57
  CLUS_3              30                54
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              24                35
  CLUS_2              27                89
  CLUS_3              25                32
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              14                33
  CLUS_2              29                69
  CLUS_3              33                57
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               6                20
  CLUS_2              20                42
  CLUS_3              50                97

Clustering(17) Variable = 9p gain mutation analysis
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                76
  CLUS_2               2                67
  CLUS_3               3                92
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                57
  CLUS_2               4                85
  CLUS_3               1                93
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                42
  CLUS_2               0                23
  CLUS_3               2                32
  CLUS_4               4                40
D17V4, multiclass
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                79
  CLUS_2               1                66
  CLUS_3               5                79
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                57
  CLUS_2               5               111
  CLUS_3               1                56
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                44
  CLUS_2               3                95
  CLUS_3               3                87
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                60
  CLUS_3               5               142

Clustering(18) Variable = 9q gain mutation analysis
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6                74
  CLUS_2               3                66
  CLUS_3               1                94
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                58
  CLUS_2               5                84
  CLUS_3               2                92
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                42
  CLUS_2               0                23
  CLUS_3               2                32
  CLUS_4               3                41
D18V4, multiclass
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                78
  CLUS_2               1                66
  CLUS_3               5                79
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                57
  CLUS_2               4               112
  CLUS_3               3                54
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                44
  CLUS_2               3                95
  CLUS_3               3                87
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                60
  CLUS_3               5               142

Clustering(19) Variable = 11p gain mutation analysis
D19V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 75
  CLUS_2               10                 59
  CLUS_3                2                 93
D19V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 56
  CLUS_2                6                 83
  CLUS_3                6                 88
D19V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 37
  CLUS_2                2                 21
  CLUS_3                0                 34
  CLUS_4                2                 42
D19V4, multiclass
D19V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               11                 70
  CLUS_2                2                 65
  CLUS_3                3                 81
D19V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                8                 51
  CLUS_2                7                109
  CLUS_3                1                 56
D19V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                5                 93
  CLUS_3                9                 81
D19V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                8                 54
  CLUS_3                7                140

Clustering(20) Variable = 11q gain mutation analysis
D20V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 77
  CLUS_2               11                 58
  CLUS_3                1                 94
D20V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                 55
  CLUS_2                4                 85
  CLUS_3                5                 89
D20V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                1                 22
  CLUS_3                0                 34
  CLUS_4                2                 42
D20V4, multiclass
D20V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                 72
  CLUS_2                2                 65
  CLUS_3                1                 83
D20V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                 53
  CLUS_2                6                110
  CLUS_3                0                 57
D20V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                4                 94
  CLUS_3                7                 83
D20V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                6                 56
  CLUS_3                6                141

Clustering(21) Variable = 12p gain mutation analysis
D21V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                 73
  CLUS_2               16                 53
  CLUS_3                0                 95
D21V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 52
  CLUS_2                9                 80
  CLUS_3                5                 89
D21V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                1                 22
  CLUS_3                3                 31
  CLUS_4                5                 39
D21V4, multiclass
D21V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               15                 66
  CLUS_2                1                 66
  CLUS_3                7                 77
D21V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 50
  CLUS_2                8                108
  CLUS_3                6                 51
D21V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                 40
  CLUS_2                7                 91
  CLUS_3                9                 81
D21V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                8                 54
  CLUS_3               12                135

Clustering(22) Variable = 12q gain mutation analysis
D22V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                 77
  CLUS_2                8                 61
  CLUS_3                0                 95
D22V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 57
  CLUS_2                4                 85
  CLUS_3                3                 91
D22V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                 40
  CLUS_2                0                 23
  CLUS_3                2                 32
  CLUS_4                2                 42
D22V4, multiclass
D22V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                6                 75
  CLUS_2                0                 67
  CLUS_3                5                 79
D22V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                6                 53
  CLUS_2                3                113
  CLUS_3                2                 55
D22V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                3                 95
  CLUS_3                5                 85
D22V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                5                 57
  CLUS_3                4                143

Clustering(23) Variable = 13q gain mutation analysis
D23V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               22                 58
  CLUS_2               14                 55
  CLUS_3                3                 92
D23V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               19                 42
  CLUS_2               16                 73
  CLUS_3                4                 90
D23V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 36
  CLUS_2                2                 21
  CLUS_3                2                 32
  CLUS_4                8                 36
D23V4, multiclass
D23V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               21                 60
  CLUS_2                5                 62
  CLUS_3               12                 72
D23V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               10                 49
  CLUS_2               12                104
  CLUS_3               16                 41
D23V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2               18                 80
  CLUS_3               15                 75
D23V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                8                 54
  CLUS_3               28                119

Clustering(24) Variable = 14q gain mutation analysis
D24V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 74
  CLUS_2                8                 61
  CLUS_3                2                 93
D24V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 55
  CLUS_2                8                 81
  CLUS_3                2                 92
D24V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 42
  CLUS_2                0                 23
  CLUS_3                3                 31
  CLUS_4                5                 39
D24V4, multiclass
D24V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 75
  CLUS_2                4                 63
  CLUS_3                6                 78
D24V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 55
  CLUS_2                7                109
  CLUS_3                5                 52
D24V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                7                 91
  CLUS_3                7                 83
D24V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                3                 59
  CLUS_3               12                135

Clustering(25) Variable = 15q gain mutation analysis
D25V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                 73
  CLUS_2               23                 46
  CLUS_3                5                 90
D25V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                 51
  CLUS_2               15                 74
  CLUS_3               10                 84
D25V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 36
  CLUS_2                1                 22
  CLUS_3                5                 29
  CLUS_4                4                 40
D25V4, multiclass
D25V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               14                 67
  CLUS_2                7                 60
  CLUS_3               11                 73
D25V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               11                 48
  CLUS_2               14                102
  CLUS_3                7                 50
D25V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 41
  CLUS_2               13                 85
  CLUS_3               12                 78
D25V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2               13                 49
  CLUS_3               16                131

Clustering(26) Variable = 16p gain mutation analysis
D26V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                9                 71
  CLUS_2                7                 62
  CLUS_3                0                 95
D26V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                9                 52
  CLUS_2                5                 84
  CLUS_3                2                 92
D26V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                0                 23
  CLUS_3                1                 33
  CLUS_4                3                 41
D26V4, multiclass
D26V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               11                 70
  CLUS_2                1                 66
  CLUS_3                4                 80
D26V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 53
  CLUS_2                5                111
  CLUS_3                5                 52
D26V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                5                 93
  CLUS_3                8                 82
D26V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                6                 56
  CLUS_3                9                138

Clustering(27) Variable = 16q gain mutation analysis
D27V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                8                 72
  CLUS_2                6                 63
  CLUS_3                1                 94
D27V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                8                 53
  CLUS_2                4                 85
  CLUS_3                3                 91
D27V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 37
  CLUS_2                0                 23
  CLUS_3                2                 32
  CLUS_4                1                 43
D27V4, multiclass
D27V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                 71
  CLUS_2                1                 66
  CLUS_3                4                 80
D27V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 54
  CLUS_2                5                111
  CLUS_3                5                 52
D27V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                4                 94
  CLUS_3                7                 83
D27V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                6                 56
  CLUS_3                7                140

Clustering(28) Variable = 17p gain mutation analysis
D28V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                7                 73
  CLUS_2                7                 62
  CLUS_3                2                 93
D28V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                7                 54
  CLUS_2                5                 84
  CLUS_3                4                 90
D28V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                3                 20
  CLUS_3                2                 32
  CLUS_4                3                 41
D28V4, multiclass
D28V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                8                 73
  CLUS_2                4                 63
  CLUS_3                4                 80
D28V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                 55
  CLUS_2                6                110
  CLUS_3                6                 51
D28V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                5                 93
  CLUS_3                5                 85
D28V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                5                 57
  CLUS_3                8                139

Clustering(29) Variable = 17q gain mutation analysis
D29V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               15                 65
  CLUS_2                8                 61
  CLUS_3                5                 90
D29V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                9                 52
  CLUS_2               14                 75
  CLUS_3                5                 89
D29V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                4                 19
  CLUS_3                6                 28
  CLUS_4                7                 37
D29V4, multiclass
D29V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                8                 73
  CLUS_2                6                 61
  CLUS_3               14                 70
D29V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 55
  CLUS_2               14                102
  CLUS_3               10                 47
D29V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2               16                 82
  CLUS_3                6                 84
D29V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                6                 56
  CLUS_3               19                128

Clustering(30) Variable = 18p gain mutation analysis
D30V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               11                 69
  CLUS_2               11                 58
  CLUS_3                5                 90
D30V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                8                 53
  CLUS_2               13                 76
  CLUS_3                6                 88
D30V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 36
  CLUS_2                2                 21
  CLUS_3                4                 30
  CLUS_4                7                 37
D30V4, multiclass
D30V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 75
  CLUS_2                5                 62
  CLUS_3               15                 69
D30V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 55
  CLUS_2               12                104
  CLUS_3               10                 47
D30V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 38
  CLUS_2               11                 87
  CLUS_3                6                 84
D30V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                5                 21
  CLUS_2                4                 58
  CLUS_3               17                130

Clustering(31) Variable = 18q gain mutation analysis
D31V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                 74
  CLUS_2                8                 61
  CLUS_3                2                 93
D31V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 56
  CLUS_2                8                 81
  CLUS_3                3                 91
D31V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                1                 22
  CLUS_3                1                 33
  CLUS_4                5                 39
D31V4, multiclass
D31V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 76
  CLUS_2                2                 65
  CLUS_3                8                 76
D31V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 55
  CLUS_2                4                112
  CLUS_3                7                 50
D31V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                7                 91
  CLUS_3                5                 85
D31V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                3                 59
  CLUS_3               11                136

Clustering(32) Variable = 19p gain mutation analysis
D32V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                7                 73
  CLUS_2                8                 61
  CLUS_3                1                 94
D32V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                8                 53
  CLUS_2                6                 83
  CLUS_3                2                 92
D32V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 39
  CLUS_2                1                 22
  CLUS_3                2                 32
  CLUS_4                6                 38
D32V4, multiclass
D32V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               10                 71
  CLUS_2                0                 67
  CLUS_3                6                 78
D32V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                7                 52
  CLUS_2                3                113
  CLUS_3                6                 51
D32V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 44
  CLUS_2               10                 88
  CLUS_3                3                 87
D32V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 58
  CLUS_3               11                136

Clustering(33) Variable = 19q gain mutation analysis
D33V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                 72
  CLUS_2               10                 59
  CLUS_3                2                 93
D33V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               10                 51
  CLUS_2                5                 84
  CLUS_3                5                 89
D33V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 37
  CLUS_2                2                 21
  CLUS_3                1                 33
  CLUS_4                6                 38
D33V4, multiclass
D33V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 68
  CLUS_2                0                 67
  CLUS_3                6                 78
D33V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                 51
  CLUS_2                5                111
  CLUS_3                6                 51
D33V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                9                 89
  CLUS_3                6                 84
D33V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                6                 56
  CLUS_3               13                134

Clustering(34) Variable = 20p gain mutation analysis
D34V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               26                 54
  CLUS_2               32                 37
  CLUS_3               12                 83
D34V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               26                 35
  CLUS_2               28                 61
  CLUS_3               16                 78
D34V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               11                 31
  CLUS_2                3                 20
  CLUS_3               11                 23
  CLUS_4               14                 30
D34V4, multiclass
D34V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               37                 44
  CLUS_2               10                 57
  CLUS_3               21                 63
D34V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               26                 33
  CLUS_2               25                 91
  CLUS_3               17                 40
D34V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               18                 29
  CLUS_2               21                 77
  CLUS_3               28                 62
D34V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               10                 16
  CLUS_2               20                 42
  CLUS_3               37                110

Clustering(35) Variable = 20q gain mutation analysis
D35V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               36                 44
  CLUS_2               39                 30
  CLUS_3               14                 81
D35V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               30                 31
  CLUS_2               37                 52
  CLUS_3               22                 72
D35V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               12                 30
  CLUS_2                7                 16
  CLUS_3               15                 19
  CLUS_4               18                 26
D35V4, multiclass
D35V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               42                 39
  CLUS_2               15                 52
  CLUS_3               28                 56
D35V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               27                 32
  CLUS_2               34                 82
  CLUS_3               24                 33
D35V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               21                 26
  CLUS_2               33                 65
  CLUS_3               30                 60
D35V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               12                 14
  CLUS_2               21                 41
  CLUS_3               51                 96

Clustering(36) Variable = 21q gain mutation analysis
D36V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 65
  CLUS_2                8                 61
  CLUS_3                6                 89
D36V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 46
  CLUS_2               11                 78
  CLUS_3                3                 91
D36V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                5                 37
  CLUS_2                0                 23
  CLUS_3                1                 33
  CLUS_4                5                 39
D36V4, multiclass
D36V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               14                 67
  CLUS_2                4                 63
  CLUS_3                9                 75
D36V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               11                 48
  CLUS_2                8                108
  CLUS_3                8                 49
D36V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                9                 89
  CLUS_3               13                 77
D36V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                7                 55
  CLUS_3               17                130

Clustering(37) Variable = 22q gain mutation analysis
D37V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               24                 56
  CLUS_2               23                 46
  CLUS_3               12                 83
D37V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               17                 44
  CLUS_2               25                 64
  CLUS_3               17                 77
D37V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                8                 34
  CLUS_2                6                 17
  CLUS_3                6                 28
  CLUS_4               11                 33
D37V4, multiclass
D37V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               23                 58
  CLUS_2               12                 55
  CLUS_3               21                 63
D37V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               15                 44
  CLUS_2               26                 90
  CLUS_3               15                 42
D37V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               14                 33
  CLUS_2               22                 76
  CLUS_3               21                 69
D37V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                8                 18
  CLUS_2               12                 50
  CLUS_3               37                110

Clustering(38) Variable = Xq gain mutation analysis
D38V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                78
  CLUS_2               1                68
  CLUS_3               1                94
D38V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                60
  CLUS_2               2                87
  CLUS_3               1                93
D38V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                41
  CLUS_2               0                23
  CLUS_3               1                33
  CLUS_4               1                43
D38V4, multiclass
D38V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                81
  CLUS_2               1                66
  CLUS_3               3                81
D38V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                59
  CLUS_2               1               115
  CLUS_3               3                54
D38V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                47
  CLUS_2               3                95
  CLUS_3               1                89
D38V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                62
  CLUS_3               4               143

Clustering(39) Variable = 1p loss mutation analysis
D39V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               6                74
  CLUS_2               7                62
  CLUS_3               2                93
D39V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                53
  CLUS_2               5                84
  CLUS_3               2                92
D39V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                41
  CLUS_2               1                22
  CLUS_3               4                30
  CLUS_4               4                40
D39V4, multiclass
D39V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                73
  CLUS_2               0                67
  CLUS_3               7                77
D39V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                54
  CLUS_2               4               112
  CLUS_3               6                51
D39V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2                45
  CLUS_2               6                92
  CLUS_3               7                83
D39V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                59
  CLUS_3              11               136

Clustering(40) Variable = 1q loss mutation analysis
D40V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                79
  CLUS_2               5                64
  CLUS_3               1                94
D40V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                58
  CLUS_2               3                86
  CLUS_3               1                93
D40V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                41
  CLUS_2               1                22
  CLUS_3               1                33
  CLUS_4               0                44
D40V4, multiclass
D40V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                77
  CLUS_2               0                67
  CLUS_3               3                81
D40V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                56
  CLUS_2               3               113
  CLUS_3               1                56
D40V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                46
  CLUS_2               2                96
  CLUS_3               4                86
D40V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                60
  CLUS_3               5               142

Clustering(41) Variable = 2p loss mutation analysis
D41V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              12                68
  CLUS_2               3                66
  CLUS_3               3                92
D41V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               7                54
  CLUS_2               8                81
  CLUS_3               3                91
D41V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                41
  CLUS_2               1                22
  CLUS_3               4                30
  CLUS_4               5                39
D41V4, multiclass
D41V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                76
  CLUS_2               4                63
  CLUS_3               8                76
D41V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                57
  CLUS_2               7               109
  CLUS_3               8                49
D41V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                45
  CLUS_2              15                83
  CLUS_3               1                89
D41V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                62
  CLUS_3              17               130

Clustering(42) Variable = 2q loss mutation analysis
D42V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              12                68
  CLUS_2               3                66
  CLUS_3               4                91
D42V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               8                53
  CLUS_2               9                80
  CLUS_3               2                92
D42V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                41
  CLUS_2               1                22
  CLUS_3               4                30
  CLUS_4               6                38
D42V4, multiclass
D42V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                76
  CLUS_2               4                63
  CLUS_3              10                74
D42V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                56
  CLUS_2               7               109
  CLUS_3               9                48
D42V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                44
  CLUS_2              15                83
  CLUS_3               1                89
D42V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                61
  CLUS_3              17               130

Clustering(43) Variable = 3p loss mutation analysis
D43V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                74
  CLUS_2              11                58
  CLUS_3               5                90
D43V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                55
  CLUS_2              12                77
  CLUS_3               4                90
D43V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                39
  CLUS_2               1                22
  CLUS_3               6                28
  CLUS_4               4                40
D43V4, multiclass
D43V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              15                66
  CLUS_2               3                64
  CLUS_3               4                80
D43V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              11                48
  CLUS_2               8               108
  CLUS_3               3                54
D43V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                42
  CLUS_2               8                90
  CLUS_3               9                81
D43V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               9                53
  CLUS_3              12               135

Clustering(44) Variable = 3q loss mutation analysis
D44V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                76
  CLUS_2              10                59
  CLUS_3               5                90
D44V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5                56
  CLUS_2              11                78
  CLUS_3               3                91
D44V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                39
  CLUS_2               2                21
  CLUS_3               6                28
  CLUS_4               3                41
D44V4, multiclass
D44V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11                70
  CLUS_2               3                64
  CLUS_3               5                79
D44V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               8                51
  CLUS_2               8               108
  CLUS_3               3                54
D44V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                44
  CLUS_2               9                89
  CLUS_3               7                83
D44V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               7                55
  CLUS_3              12               135

Clustering(45) Variable = 4p loss mutation analysis
D45V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9                71
  CLUS_2              12                57
  CLUS_3               9                86
D45V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              11                50
  CLUS_2              11                78
  CLUS_3               8                86
D45V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9                33
  CLUS_2               1                22
  CLUS_3               5                29
  CLUS_4               7                37
D45V4, multiclass
D45V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              15                66
  CLUS_2               2                65
  CLUS_3              12                72
D45V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              12                47
  CLUS_2               7               109
  CLUS_3              10                47
D45V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               6                41
  CLUS_2              11                87
  CLUS_3              13                77
D45V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                23
  CLUS_2              12                50
  CLUS_3              15               132

Clustering(46) Variable = 4q loss mutation analysis
D46V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                70
  CLUS_2              13                56
  CLUS_3               8                87
D46V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              13                48
  CLUS_2              10                79
  CLUS_3               8                86
D46V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               9                33
  CLUS_2               1                22
  CLUS_3               4                30
  CLUS_4               6                38
D46V4, multiclass
D46V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              17                64
  CLUS_2               3                64
  CLUS_3              10                74
D46V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              14                45
  CLUS_2               7               109
  CLUS_3               9                48
D46V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                40
  CLUS_2               9                89
  CLUS_3              14                76
D46V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2              13                49
  CLUS_3              13               134

Clustering(47) Variable = 5p loss mutation analysis
D47V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              11                69
  CLUS_2               7                62
  CLUS_3              14                81
D47V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                55
  CLUS_2              16                73
  CLUS_3              10                84
D47V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4                38
  CLUS_2               3                20
  CLUS_3               9                25
  CLUS_4               7                37
D47V4, multiclass
D47V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               9                72
  CLUS_2               7                60
  CLUS_3              15                69
D47V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               7                52
  CLUS_2              12               104
  CLUS_3              12                45
D47V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5                42
  CLUS_2              19                79
  CLUS_3               7                83
D47V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               7                55
  CLUS_3              23               124

Clustering(48) Variable = 5q loss mutation analysis
D48V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              12                68
  CLUS_2              15                54
  CLUS_3              19                76
D48V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               6                55
  CLUS_2              23                66
  CLUS_3              17                77
D48V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               6                36
  CLUS_2               2                21
  CLUS_3              12                22
  CLUS_4               9                35
D48V4, multiclass
D48V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              17                64
  CLUS_2               9                58
  CLUS_3              20                64
D48V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              14                45
  CLUS_2              18                98
  CLUS_3              14                43
D48V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                39
  CLUS_2              22                76
  CLUS_3              16                74
D48V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2              10                52
  CLUS_3              32               115

Clustering(49) Variable = 6p loss mutation analysis
D49V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               5                75
  CLUS_2              15                54
  CLUS_3               8                87
D49V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                51
  CLUS_2              11                78
  CLUS_3               7                87
D49V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               8                34
  CLUS_2               2                21
  CLUS_3               3                31
  CLUS_4               4                40
D49V4, multiclass
D49V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              12                69
  CLUS_2               5                62
  CLUS_3              11                73
D49V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                49
  CLUS_2              10               106
  CLUS_3               8                49
D49V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4                43
  CLUS_2               9                89
  CLUS_3              14                76
D49V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                24
  CLUS_2              11                51
  CLUS_3              14               133

Clustering(50) Variable = 6q loss mutation analysis
D50V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              35                45
  CLUS_2              35                34
  CLUS_3              20                75
D50V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              27                34
  CLUS_2              42                47
  CLUS_3              21                73
D50V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              17                25
  CLUS_2               5                18
  CLUS_3              15                19
  CLUS_4              16                28
D50V4, multiclass
D50V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              39                42
  CLUS_2              15                52
  CLUS_3              34                50
D50V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              30                29
  CLUS_2              34                82
  CLUS_3              24                33
D50V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              21                26
  CLUS_2              35                63
  CLUS_3              32                58
D50V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              13                13
  CLUS_2              25                37
  CLUS_3              50                97

Clustering(51) Variable = 7p loss mutation analysis
D51V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                77
  CLUS_2               1                68
  CLUS_3               3                92
D51V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               4                57
  CLUS_2               3                86
  CLUS_3               0                94
D51V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                41
  CLUS_2               0                23
  CLUS_3               1                33
  CLUS_4               3                41
D51V4, multiclass
D51V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                78
  CLUS_2               1                66
  CLUS_3               3                81
D51V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                57
  CLUS_2               4               112
  CLUS_3               1                56
D51V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                45
  CLUS_2               4                94
  CLUS_3               1                89
D51V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                60
  CLUS_3               5               142

Clustering(52) Variable = 7q loss mutation analysis
D52V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                77
  CLUS_2               1                68
  CLUS_3               2                93
D52V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                57
  CLUS_2               1                88
  CLUS_3               1                93
D52V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                41
  CLUS_2               0                23
  CLUS_3               0                34
  CLUS_4               2                42
D52V4, multiclass
D52V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                79
  CLUS_2               2                65
  CLUS_3               2                82
D52V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                58
  CLUS_2               4               112
  CLUS_3               1                56
D52V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                46
  CLUS_2               3                95
  CLUS_3               2                88
D52V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                61
  CLUS_3               5               142

Clustering(53) Variable = 8p loss mutation analysis
D53V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              14                66
  CLUS_2               8                61
  CLUS_3               6                89
D53V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               8                53
  CLUS_2              14                75
  CLUS_3               6                88
D53V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                39
  CLUS_2               1                22
  CLUS_3               4                30
  CLUS_4              11                33
D53V4, multiclass
D53V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              11                70
  CLUS_2               3                64
  CLUS_3              14                70
D53V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               8                51
  CLUS_2              10               106
  CLUS_3              10                47
D53V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                44
  CLUS_2              17                81
  CLUS_3               7                83
D53V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                58
  CLUS_3              22               125

Clustering(54) Variable = 8q loss mutation analysis
D54V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                78
  CLUS_2               1                68
  CLUS_3               2                93
D54V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                60
  CLUS_2               4                85
  CLUS_3               0                94
D54V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                41
  CLUS_2               0                23
  CLUS_3               0                34
  CLUS_4               4                40
D54V4, multiclass
D54V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                78
  CLUS_2               0                67
  CLUS_3               2                82
D54V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                56
  CLUS_2               0               116
  CLUS_3               2                55
D54V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                46
  CLUS_2               3                95
  CLUS_3               1                89
D54V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                60
  CLUS_3               3               144

Clustering(55) Variable = 9p loss mutation analysis
D55V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              56                24
  CLUS_2              48                21
  CLUS_3              30                65
D55V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              40                21
  CLUS_2              60                29
  CLUS_3              34                60
D55V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              25                17
  CLUS_2               9                14
  CLUS_3              22                12
  CLUS_4              21                23
D55V4, multiclass
D55V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              54                27
  CLUS_2              26                41
  CLUS_3              48                36
D55V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              39                20
  CLUS_2              51                65
  CLUS_3              38                19
D55V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              26                21
  CLUS_2              53                45
  CLUS_3              49                41
D55V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              13                13
  CLUS_2              30                32
  CLUS_3              85                62

Clustering(56) Variable = 9q loss mutation analysis
D56V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              40                40
  CLUS_2              33                36
  CLUS_3              27                68
D56V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              24                37
  CLUS_2              50                39
  CLUS_3              26                68
D56V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              17                25
  CLUS_2               6                17
  CLUS_3              16                18
  CLUS_4              19                25
D56V4, multiclass
D56V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              40                41
  CLUS_2              25                42
  CLUS_3              32                52
D56V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              26                33
  CLUS_2              47                69
  CLUS_3              24                33
D56V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              22                25
  CLUS_2              41                57
  CLUS_3              33                57
D56V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                15
  CLUS_2              22                40
  CLUS_3              63                84

Clustering(57) Variable = 10p loss mutation analysis
D57V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               38                 42
  CLUS_2               44                 25
  CLUS_3               21                 74
D57V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               36                 25
  CLUS_2               43                 46
  CLUS_3               24                 70
D57V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               21                 21
  CLUS_2                8                 15
  CLUS_3               15                 19
  CLUS_4               15                 29
D57V4, multiclass
D57V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               51                 30
  CLUS_2               14                 53
  CLUS_3               35                 49
D57V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               34                 25
  CLUS_2               36                 80
  CLUS_3               30                 27
D57V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               17                 30
  CLUS_2               44                 54
  CLUS_3               40                 50
D57V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                8                 18
  CLUS_2               23                 39
  CLUS_3               70                 77

Clustering(58) Variable = 10q loss mutation analysis
D58V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               41                 39
  CLUS_2               50                 19
  CLUS_3               21                 74
D58V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               35                 26
  CLUS_2               50                 39
  CLUS_3               27                 67
D58V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               23                 19
  CLUS_2                9                 14
  CLUS_3               15                 19
  CLUS_4               18                 26
D58V4, multiclass
D58V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               55                 26
  CLUS_2               17                 50
  CLUS_3               38                 46
D58V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               39                 20
  CLUS_2               42                 74
  CLUS_3               29                 28
D58V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               22                 25
  CLUS_2               45                 53
  CLUS_3               43                 47
D58V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               11                 15
  CLUS_2               25                 37
  CLUS_3               74                 73

Clustering(59) Variable = 11p loss mutation analysis
D59V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               28                 52
  CLUS_2               17                 52
  CLUS_3               12                 83
D59V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               20                 41
  CLUS_2               26                 63
  CLUS_3               11                 83
D59V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               12                 30
  CLUS_2                3                 20
  CLUS_3                9                 25
  CLUS_4               13                 31
D59V4, multiclass
D59V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               22                 59
  CLUS_2                9                 58
  CLUS_3               24                 60
D59V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               16                 43
  CLUS_2               18                 98
  CLUS_3               21                 36
D59V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               13                 34
  CLUS_2               28                 70
  CLUS_3               15                 75
D59V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                6                 20
  CLUS_2               12                 50
  CLUS_3               38                109

Clustering(60) Variable = 11q loss mutation analysis
D60V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               33                 47
  CLUS_2               17                 52
  CLUS_3               14                 81
D60V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               23                 38
  CLUS_2               24                 65
  CLUS_3               17                 77
D60V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               14                 28
  CLUS_2                6                 17
  CLUS_3                9                 25
  CLUS_4               13                 31
D60V4, multiclass
D60V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               21                 60
  CLUS_2               12                 55
  CLUS_3               30                 54
D60V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               15                 44
  CLUS_2               22                 94
  CLUS_3               26                 31
D60V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               13                 34
  CLUS_2               29                 69
  CLUS_3               21                 69
D60V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                7                 19
  CLUS_2               13                 49
  CLUS_3               43                104

Clustering(61) Variable = 12p loss mutation analysis
D61V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                 72
  CLUS_2                4                 65
  CLUS_3                3                 92
D61V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                 57
  CLUS_2               10                 79
  CLUS_3                1                 93
D61V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                0                 23
  CLUS_3                2                 32
  CLUS_4                4                 40
D61V4, multiclass
D61V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                 73
  CLUS_2                4                 63
  CLUS_3                3                 81
D61V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                 53
  CLUS_2                5                111
  CLUS_3                4                 53
D61V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                5                 93
  CLUS_3                6                 84
D61V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                5                 57
  CLUS_3                8                139

Clustering(62) Variable = 12q loss mutation analysis
D62V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               14                 66
  CLUS_2                7                 62
  CLUS_3                3                 92
D62V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                9                 52
  CLUS_2               13                 76
  CLUS_3                2                 92
D62V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                5                 37
  CLUS_2                1                 22
  CLUS_3                4                 30
  CLUS_4                5                 39
D62V4, multiclass
D62V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               11                 70
  CLUS_2                4                 63
  CLUS_3                8                 76
D62V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                7                 52
  CLUS_2                8                108
  CLUS_3                8                 49
D62V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                9                 89
  CLUS_3                8                 82
D62V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                5                 57
  CLUS_3               16                131

Clustering(63) Variable = 13q loss mutation analysis
D63V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               14                 66
  CLUS_2               12                 57
  CLUS_3               10                 85
D63V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                6                 55
  CLUS_2               15                 74
  CLUS_3               15                 79
D63V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                8                 34
  CLUS_2                7                 16
  CLUS_3                6                 28
  CLUS_4                4                 40
D63V4, multiclass
D63V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               14                 67
  CLUS_2                8                 59
  CLUS_3               13                 71
D63V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                9                 50
  CLUS_2               17                 99
  CLUS_3                9                 48
D63V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                 44
  CLUS_2               20                 78
  CLUS_3               13                 77
D63V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2               11                 51
  CLUS_3               24                123

Clustering(64) Variable = 14q loss mutation analysis
D64V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               18                 62
  CLUS_2               30                 39
  CLUS_3                6                 89
D64V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               20                 41
  CLUS_2               19                 70
  CLUS_3               15                 79
D64V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               14                 28
  CLUS_2                4                 19
  CLUS_3                7                 27
  CLUS_4                9                 35
D64V4, multiclass
D64V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               28                 53
  CLUS_2               10                 57
  CLUS_3               13                 71
D64V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               18                 41
  CLUS_2               20                 96
  CLUS_3               13                 44
D64V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               10                 37
  CLUS_2               21                 77
  CLUS_3               20                 70
D64V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 23
  CLUS_2               15                 47
  CLUS_3               33                114

Clustering(65) Variable = 15q loss mutation analysis
D65V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               12                 68
  CLUS_2                2                 67
  CLUS_3                1                 94
D65V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                5                 56
  CLUS_2                8                 81
  CLUS_3                2                 92
D65V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                 41
  CLUS_2                1                 22
  CLUS_3                2                 32
  CLUS_4                4                 40
D65V4, multiclass
D65V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                 74
  CLUS_2                4                 63
  CLUS_3                4                 80
D65V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                4                 55
  CLUS_2                9                107
  CLUS_3                2                 55
D65V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                9                 89
  CLUS_3                5                 85
D65V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 61
  CLUS_3               13                134

Clustering(66) Variable = 16p loss mutation analysis
D66V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                 71
  CLUS_2               10                 59
  CLUS_3                3                 92
D66V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                8                 53
  CLUS_2               12                 77
  CLUS_3                2                 92
D66V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                 39
  CLUS_2                2                 21
  CLUS_3                4                 30
  CLUS_4                4                 40
D66V4, multiclass
D66V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                6                 75
  CLUS_2                4                 63
  CLUS_3               12                 72
D66V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                 56
  CLUS_2               11                105
  CLUS_3                8                 49
D66V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                 42
  CLUS_2               13                 85
  CLUS_3                3                 87
D66V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 58
  CLUS_3               16                131

Clustering(67) Variable = 16q loss mutation analysis
D67V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               18                 62
  CLUS_2               19                 50
  CLUS_3                9                 86
D67V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               15                 46
  CLUS_2               21                 68
  CLUS_3               10                 84
D67V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                8                 34
  CLUS_2                2                 21
  CLUS_3                8                 26
  CLUS_4                9                 35
D67V4, multiclass
D67V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               12                 69
  CLUS_2                9                 58
  CLUS_3               23                 61
D67V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               10                 49
  CLUS_2               19                 97
  CLUS_3               15                 42
D67V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                9                 38
  CLUS_2               25                 73
  CLUS_3               10                 80
D67V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                7                 55
  CLUS_3               34                113

Clustering(68) Variable = 17p loss mutation analysis
D68V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               19                 61
  CLUS_2               14                 55
  CLUS_3               17                 78
D68V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               10                 51
  CLUS_2               24                 65
  CLUS_3               16                 78
D68V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                7                 35
  CLUS_2                6                 17
  CLUS_3               10                 24
  CLUS_4                8                 36
D68V4, multiclass
D68V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               15                 66
  CLUS_2                9                 58
  CLUS_3               24                 60
D68V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               13                 46
  CLUS_2               24                 92
  CLUS_3               11                 46
D68V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                9                 38
  CLUS_2               23                 75
  CLUS_3               16                 74
D68V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                3                 23
  CLUS_2               11                 51
  CLUS_3               34                113

Clustering(69) Variable = 17q loss mutation analysis
D69V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 75
  CLUS_2               11                 58
  CLUS_3                6                 89
D69V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 55
  CLUS_2               10                 79
  CLUS_3                6                 88
D69V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                1                 22
  CLUS_3                5                 29
  CLUS_4                2                 42
D69V4, multiclass
D69V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 73
  CLUS_2                2                 65
  CLUS_3               10                 74
D69V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                7                 52
  CLUS_2                7                109
  CLUS_3                6                 51
D69V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                7                 91
  CLUS_3                7                 83
D69V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                5                 57
  CLUS_3               13                134

Clustering(70) Variable = 18p loss mutation analysis
D70V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               20                 60
  CLUS_2               19                 50
  CLUS_3                9                 86
D70V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               17                 44
  CLUS_2               22                 67
  CLUS_3                9                 85
D70V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                 36
  CLUS_2                4                 19
  CLUS_3               10                 24
  CLUS_4                7                 37
D70V4, multiclass
D70V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               28                 53
  CLUS_2                6                 61
  CLUS_3               13                 71
D70V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               18                 41
  CLUS_2               16                100
  CLUS_3               13                 44
D70V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               10                 37
  CLUS_2               20                 78
  CLUS_3               17                 73
D70V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                4                 22
  CLUS_2               13                 49
  CLUS_3               30                117

Clustering(71) Variable = 18q loss mutation analysis
D71V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               17                 63
  CLUS_2               18                 51
  CLUS_3                9                 86
D71V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               15                 46
  CLUS_2               20                 69
  CLUS_3                9                 85
D71V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                5                 37
  CLUS_2                4                 19
  CLUS_3               11                 23
  CLUS_4                4                 40
D71V4, multiclass
D71V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               21                 60
  CLUS_2                7                 60
  CLUS_3               16                 68
D71V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               13                 46
  CLUS_2               17                 99
  CLUS_3               14                 43
D71V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               10                 37
  CLUS_2               18                 80
  CLUS_3               16                 74
D71V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 23
  CLUS_2               11                 51
  CLUS_3               30                117

Clustering(72) Variable = 19p loss mutation analysis
D72V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 73
  CLUS_2                8                 61
  CLUS_3                4                 91
D72V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                 58
  CLUS_2                9                 80
  CLUS_3                7                 87
D72V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                1                 22
  CLUS_3                7                 27
  CLUS_4                0                 44
D72V4, multiclass
D72V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                 78
  CLUS_2                5                 62
  CLUS_3               10                 74
D72V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 57
  CLUS_2               11                105
  CLUS_3                5                 52
D72V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                9                 89
  CLUS_3                5                 85
D72V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                4                 58
  CLUS_3               13                134

Clustering(73) Variable = 19q loss mutation analysis
D73V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                9                 71
  CLUS_2                6                 63
  CLUS_3                4                 91
D73V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 58
  CLUS_2               10                 79
  CLUS_3                6                 88
D73V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 39
  CLUS_2                2                 21
  CLUS_3                5                 29
  CLUS_4                3                 41
D73V4, multiclass
D73V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 77
  CLUS_2                5                 62
  CLUS_3                9                 75
D73V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 55
  CLUS_2               10                106
  CLUS_3                4                 53
D73V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                8                 90
  CLUS_3                6                 84
D73V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                4                 58
  CLUS_3               13                134

Clustering(74) Variable = 20p loss mutation analysis
D74V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 76
  CLUS_2                5                 64
  CLUS_3                3                 92
D74V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 56
  CLUS_2                3                 86
  CLUS_3                4                 90
D74V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 39
  CLUS_2                2                 21
  CLUS_3                1                 33
  CLUS_4                0                 44
D74V4, multiclass
D74V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 76
  CLUS_2                4                 63
  CLUS_3                3                 81
D74V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                 58
  CLUS_2                6                110
  CLUS_3                5                 52
D74V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                7                 91
  CLUS_3                5                 85
D74V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                4                 58
  CLUS_3                8                139

Clustering(75) Variable = 20q loss mutation analysis
D75V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 78
  CLUS_2                0                 69
  CLUS_3                1                 94
D75V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 59
  CLUS_2                1                 88
  CLUS_3                0                 94
D75V3, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                142 
        TCGA-D3-A1Q1         TCGA-D3-A1Q4         TCGA-D3-A1Q5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q6         TCGA-D3-A1Q7         TCGA-D3-A1Q8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q9         TCGA-D3-A1QA         TCGA-D3-A1QB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2JC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JN         TCGA-D3-A2JO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A2JP         TCGA-D3-A3C1         TCGA-D3-A3C3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A3CB         TCGA-D3-A3CE         TCGA-D9-A148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DA-A1HV         TCGA-DA-A1HW         TCGA-DA-A1HY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IA         TCGA-DA-A1IB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DA-A1IC         TCGA-EE-A17X         TCGA-EE-A181 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A184         TCGA-EE-A185 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A20C         TCGA-EE-A20F         TCGA-EE-A29B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29C         TCGA-EE-A29E         TCGA-EE-A29G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29H         TCGA-EE-A29L         TCGA-EE-A29M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29N         TCGA-EE-A29P         TCGA-EE-A29R 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29W         TCGA-EE-A2A0         TCGA-EE-A2A2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2A6         TCGA-EE-A2GC         TCGA-EE-A2GH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2GI         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M8         TCGA-EE-A2MC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2MS         TCGA-EE-A2MT         TCGA-EE-A2MU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A3AA         TCGA-EE-A3AB         TCGA-EE-A3AC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A3AD         TCGA-EE-A3AE         TCGA-EE-A3AF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A3AG         TCGA-ER-A193         TCGA-ER-A195 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A197         TCGA-ER-A198         TCGA-ER-A199 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19A         TCGA-ER-A19B         TCGA-ER-A19D 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19E         TCGA-ER-A19F         TCGA-ER-A19G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19H         TCGA-ER-A19J         TCGA-ER-A19L 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A19O         TCGA-ER-A19P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19Q         TCGA-ER-A19S         TCGA-ER-A1A1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A2NC         TCGA-ER-A2ND         TCGA-ER-A2NE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A2NG         TCGA-ER-A2NH         TCGA-FS-A1YW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z0         TCGA-FS-A1Z3         TCGA-FS-A1Z4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZG         TCGA-FS-A1ZH         TCGA-FS-A1ZJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZK         TCGA-FS-A1ZM         TCGA-FS-A1ZP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZQ         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-GN-A261         TCGA-GN-A262 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"20Q LOSS WILD-TYPE" 
D75V4, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                142 
        TCGA-D3-A1Q1         TCGA-D3-A1Q4         TCGA-D3-A1Q5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q6         TCGA-D3-A1Q7         TCGA-D3-A1Q8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A1Q9         TCGA-D3-A1QA         TCGA-D3-A1QB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2JC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JN         TCGA-D3-A2JO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A2JP         TCGA-D3-A3C1         TCGA-D3-A3C3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D3-A3CB         TCGA-D3-A3CE         TCGA-D9-A148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DA-A1HV         TCGA-DA-A1HW         TCGA-DA-A1HY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IA         TCGA-DA-A1IB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DA-A1IC         TCGA-EE-A17X         TCGA-EE-A181 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A184         TCGA-EE-A185 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A20C         TCGA-EE-A20F         TCGA-EE-A29B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29C         TCGA-EE-A29E         TCGA-EE-A29G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29H         TCGA-EE-A29L         TCGA-EE-A29M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29N         TCGA-EE-A29P         TCGA-EE-A29R 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29T         TCGA-EE-A29V 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A29W         TCGA-EE-A2A0         TCGA-EE-A2A2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2A6         TCGA-EE-A2GC         TCGA-EE-A2GH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2GI         TCGA-EE-A2GK         TCGA-EE-A2GL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M8         TCGA-EE-A2MC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A2MS         TCGA-EE-A2MT         TCGA-EE-A2MU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A3AA         TCGA-EE-A3AB         TCGA-EE-A3AC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A3AD         TCGA-EE-A3AE         TCGA-EE-A3AF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EE-A3AG         TCGA-ER-A193         TCGA-ER-A195 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A197         TCGA-ER-A198         TCGA-ER-A199 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19A         TCGA-ER-A19B         TCGA-ER-A19D 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19E         TCGA-ER-A19F         TCGA-ER-A19G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19H         TCGA-ER-A19J         TCGA-ER-A19L 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A19O         TCGA-ER-A19P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A19Q         TCGA-ER-A19S         TCGA-ER-A1A1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A2NC         TCGA-ER-A2ND         TCGA-ER-A2NE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ER-A2NG         TCGA-ER-A2NH         TCGA-FS-A1YW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1Z0         TCGA-FS-A1Z3         TCGA-FS-A1Z4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZA         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZG         TCGA-FS-A1ZH         TCGA-FS-A1ZJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZK         TCGA-FS-A1ZM         TCGA-FS-A1ZP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZQ         TCGA-FS-A1ZT         TCGA-FS-A1ZU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-GN-A261         TCGA-GN-A262 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GN-A26D 
"20Q LOSS WILD-TYPE" 
D75V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 81
  CLUS_2                1                 66
  CLUS_3                2                 82
D75V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 59
  CLUS_2                1                115
  CLUS_3                2                 55
D75V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                2                 96
  CLUS_3                1                 89
D75V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 61
  CLUS_3                2                145

Clustering(76) Variable = 21q loss mutation analysis
D76V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 69
  CLUS_2               10                 59
  CLUS_3                7                 88
D76V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                8                 53
  CLUS_2               13                 76
  CLUS_3                7                 87
D76V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                7                 35
  CLUS_2                4                 19
  CLUS_3                4                 30
  CLUS_4                5                 39
D76V4, multiclass
D76V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                 68
  CLUS_2                7                 60
  CLUS_3                8                 76
D76V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               10                 49
  CLUS_2               12                104
  CLUS_3                6                 51
D76V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                 41
  CLUS_2               13                 85
  CLUS_3                9                 81
D76V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                 22
  CLUS_2               10                 52
  CLUS_3               14                133

Clustering(77) Variable = 22q loss mutation analysis
D77V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                8                 72
  CLUS_2                6                 63
  CLUS_3                5                 90
D77V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 54
  CLUS_2                8                 81
  CLUS_3                4                 90
D77V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 36
  CLUS_2                1                 22
  CLUS_3                3                 31
  CLUS_4                3                 41
D77V4, multiclass
D77V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                8                 73
  CLUS_2                5                 62
  CLUS_3                5                 79
D77V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 52
  CLUS_2                7                109
  CLUS_3                4                 53
D77V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 46
  CLUS_2               10                 88
  CLUS_3                6                 84
D77V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 58
  CLUS_3               12                135

Clustering(78) Variable = Xq loss mutation analysis
D78V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                77
  CLUS_2               5                64
  CLUS_3               2                93
D78V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                59
  CLUS_2               8                81
  CLUS_3               0                94
D78V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                40
  CLUS_2               0                23
  CLUS_3               1                33
  CLUS_4               5                39
D78V4, multiclass
D78V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                76
  CLUS_2               1                66
  CLUS_3               4                80
D78V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                54
  CLUS_2               2               114
  CLUS_3               3                54
D78V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                44
  CLUS_2               5                93
  CLUS_3               2                88
D78V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                60
  CLUS_3               6               141
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
