
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/375954/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SKCM-TM/2908175/1.GDAC_mergedClustering.Finished/SKCM-TM.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-TM", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SKCM-TM"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=260, in cluster file=244, common to both=244
[1]  51 244
[1] "Amp Peak  1(1p12) mutation analysis"
[1] 3
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         73                         171 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         73                         171 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          123                           121 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          123                           121 
[1] "Amp Peak  3(1q44) mutation analysis"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        130                         114 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        130                         114 
[1] "Amp Peak  4(3p13) mutation analysis"
[1] 3
  AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE 
                         64                         180 
  AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE 
                         64                         180 
[1] "Amp Peak  5(4q12) mutation analysis"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         46                         198 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         46                         198 
[1] "Amp Peak  6(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            73                            171 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            73                            171 
[1] "Amp Peak  7(5q35.3) mutation analysis"
[1] 3
  AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE 
                           38                           206 
  AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE 
                           38                           206 
[1] "Amp Peak  8(6p25.1) mutation analysis"
[1] 3
  AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE 
                          139                           105 
  AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE 
                          139                           105 
[1] "Amp Peak  9(6q12) mutation analysis"
[1] 3
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         56                         188 
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         56                         188 
[1] "Amp Peak 10(7p22.3) mutation analysis"
[1] 3
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                          131                           113 
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                          131                           113 
[1] "Amp Peak 11(7q34) mutation analysis"
[1] 3
  AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE 
                        145                          99 
  AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE 
                        145                          99 
[1] "Amp Peak 12(8q11.21) mutation analysis"
[1] 3
  AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE 
                           101                            143 
  AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE 
                           101                            143 
[1] "Amp Peak 13(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           118                            126 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           118                            126 
[1] "Amp Peak 14(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE 
                           21                           223 
  AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE 
                           21                           223 
[1] "Amp Peak 15(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                            47                            197 
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                            47                            197 
[1] "Amp Peak 16(11q13.4) mutation analysis"
[1] 3
  AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE 
                            44                            200 
  AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE 
                            44                            200 
[1] "Amp Peak 17(12q14.1) mutation analysis"
[1] 3
  AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE 
                            41                            203 
  AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE 
                            41                            203 
[1] "Amp Peak 18(12q15) mutation analysis"
[1] 3
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                          39                          205 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                          39                          205 
[1] "Amp Peak 19(15q24.3) mutation analysis"
[1] 3
  AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE 
                            81                            163 
  AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE 
                            81                            163 
[1] "Amp Peak 20(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE 
                            87                            157 
  AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE 
                            87                            157 
[1] "Amp Peak 21(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                            50                            194 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                            50                            194 
[1] "Amp Peak 22(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE 
                           129                            115 
  AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE 
                           129                            115 
[1] "Amp Peak 23(22q13.2) mutation analysis"
[1] 3
  AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE 
                           102                            142 
  AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE 
                           102                            142 
[1] "Amp Peak 24(Xq28) mutation analysis"
[1] 3
  AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE 
                         42                         202 
  AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE 
                         42                         202 
[1] "Del Peak  1(1p36.31) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            59                            185 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            59                            185 
[1] "Del Peak  2(1p22.1) mutation analysis"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           63                           181 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           63                           181 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           63                           181 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           63                           181 
[1] "Del Peak  4(3q23) mutation analysis"
[1] 3
  DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE 
                         37                         207 
  DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE 
                         37                         207 
[1] "Del Peak  5(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           56                           188 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           56                           188 
[1] "Del Peak  6(4q34.3) mutation analysis"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           67                           177 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           67                           177 
[1] "Del Peak  7(5q11.2) mutation analysis"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                           67                           177 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                           67                           177 
[1] "Del Peak  8(5q31.3) mutation analysis"
[1] 3
  DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE 
                           90                           154 
  DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE 
                           90                           154 
[1] "Del Peak  9(6q26) mutation analysis"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                        153                          91 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                        153                          91 
[1] "Del Peak 10(8p23.3) mutation analysis"
[1] 3
  DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE 
                           61                           183 
  DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE 
                           61                           183 
[1] "Del Peak 11(9p23) mutation analysis"
[1] 3
  DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE 
                        168                          76 
  DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE 
                        168                          76 
[1] "Del Peak 12(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                          189                            55 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                          189                            55 
[1] "Del Peak 13(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                           133                            111 
  DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE 
                           133                            111 
[1] "Del Peak 14(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE 
                            149                              95 
  DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE 
                            149                              95 
[1] "Del Peak 15(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE 
                           151                             93 
  DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE 
                           151                             93 
[1] "Del Peak 16(11q23.3) mutation analysis"
[1] 3
  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                           134                            110 
  DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE 
                           134                            110 
[1] "Del Peak 17(12p13.31) mutation analysis"
[1] 3
  DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE 
                             37                             207 
  DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE 
                             37                             207 
[1] "Del Peak 18(12q23.3) mutation analysis"
[1] 3
  DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE 
                            58                            186 
  DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE 
                            58                            186 
[1] "Del Peak 19(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             57                             187 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             57                             187 
[1] "Del Peak 20(13q34) mutation analysis"
[1] 3
  DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE 
                          58                          186 
  DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE 
                          58                          186 
[1] "Del Peak 21(14q32.2) mutation analysis"
[1] 3
  DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE 
                            83                            161 
  DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE 
                            83                            161 
[1] "Del Peak 22(15q13.3) mutation analysis"
[1] 3
  DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE 
                            54                            190 
  DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE 
                            54                            190 
[1] "Del Peak 23(15q15.3) mutation analysis"
[1] 3
  DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE 
                            56                            188 
  DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE 
                            56                            188 
[1] "Del Peak 24(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE 
                            46                            198 
  DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE 
                            46                            198 
[1] "Del Peak 25(16q12.1) mutation analysis"
[1] 3
  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                            81                            163 
  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                            81                            163 
[1] "Del Peak 26(16q24.3) mutation analysis"
[1] 3
  DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE 
                            89                            155 
  DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE 
                            89                            155 
[1] "Del Peak 27(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                            71                            173 
  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                            71                            173 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 244 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 244 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p12) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        37                          43
  CLUS_2                        18                          51
  CLUS_3                        18                          77
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        22                          39
  CLUS_2                        25                          64
  CLUS_3                        26                          68
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        16                          26
  CLUS_2                         4                          19
  CLUS_3                        10                          24
  CLUS_4                        12                          32
D1V4, multiclass
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        23                          58
  CLUS_2                        14                          53
  CLUS_3                        31                          53
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        17                          42
  CLUS_2                        27                          89
  CLUS_3                        24                          33
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        13                          34
  CLUS_2                        32                          66
  CLUS_3                        24                          66
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                         7                          19
  CLUS_2                        15                          47
  CLUS_3                        47                         100

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          62                            18
  CLUS_2                          28                            41
  CLUS_3                          33                            62
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          38                            23
  CLUS_2                          42                            47
  CLUS_3                          43                            51
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          23                            19
  CLUS_2                          10                            13
  CLUS_3                          15                            19
  CLUS_4                          24                            20
D2V4, multiclass
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          43                            38
  CLUS_2                          26                            41
  CLUS_3                          49                            35
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          31                            28
  CLUS_2                          53                            63
  CLUS_3                          34                            23
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                          54                            44
  CLUS_3                          41                            49
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          15                            11
  CLUS_2                          28                            34
  CLUS_3                          76                            71

Clustering(3) Variable = Amp Peak  3(1q44) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        64                          16
  CLUS_2                        29                          40
  CLUS_3                        37                          58
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        42                          19
  CLUS_2                        45                          44
  CLUS_3                        43                          51
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        23                          19
  CLUS_2                        11                          12
  CLUS_3                        18                          16
  CLUS_4                        22                          22
D3V4, multiclass
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        44                          37
  CLUS_2                        29                          38
  CLUS_3                        49                          35
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        31                          28
  CLUS_2                        56                          60
  CLUS_3                        35                          22
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        29                          18
  CLUS_2                        55                          43
  CLUS_3                        41                          49
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        18                           8
  CLUS_2                        28                          34
  CLUS_3                        79                          68

Clustering(4) Variable = Amp Peak  4(3p13) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        18                          62
  CLUS_2                        24                          45
  CLUS_3                        22                          73
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        14                          47
  CLUS_2                        21                          68
  CLUS_3                        29                          65
D4V3, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        14                          28
  CLUS_2                         6                          17
  CLUS_3                        11                          23
  CLUS_4                         8                          36
D4V4, multiclass
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        20                          61
  CLUS_2                        17                          50
  CLUS_3                        21                          63
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        14                          45
  CLUS_2                        30                          86
  CLUS_3                        14                          43
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        12                          35
  CLUS_2                        27                          71
  CLUS_3                        21                          69
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                         7                          19
  CLUS_2                        12                          50
  CLUS_3                        41                         106

Clustering(5) Variable = Amp Peak  5(4q12) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        25                          55
  CLUS_2                        12                          57
  CLUS_3                         9                          86
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        14                          47
  CLUS_2                        18                          71
  CLUS_3                        14                          80
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                          37
  CLUS_2                         6                          17
  CLUS_3                         9                          25
  CLUS_4                         7                          37
D5V4, multiclass
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        13                          68
  CLUS_2                        12                          55
  CLUS_3                        18                          66
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         7                          52
  CLUS_2                        23                          93
  CLUS_3                        13                          44
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         9                          38
  CLUS_2                        25                          73
  CLUS_3                        11                          79
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          23
  CLUS_2                         5                          57
  CLUS_3                        37                         110

Clustering(6) Variable = Amp Peak  6(5p15.33) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           33                             47
  CLUS_2                           25                             44
  CLUS_3                           15                             80
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           22                             39
  CLUS_2                           27                             62
  CLUS_3                           24                             70
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                            8                             15
  CLUS_3                           15                             19
  CLUS_4                           11                             33
D6V4, multiclass
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           23                             58
  CLUS_2                           17                             50
  CLUS_3                           31                             53
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           14                             45
  CLUS_2                           34                             82
  CLUS_3                           23                             34
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                           35                             63
  CLUS_3                           17                             73
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           10                             16
  CLUS_2                           12                             50
  CLUS_3                           48                             99

Clustering(7) Variable = Amp Peak  7(5q35.3) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          23                            57
  CLUS_2                          11                            58
  CLUS_3                           4                            91
D7V2, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          19                            42
  CLUS_2                          12                            77
  CLUS_3                           7                            87
D7V3, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                           3                            20
  CLUS_3                           7                            27
  CLUS_4                           4                            40
D7V4, multiclass
D7V5, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          12                            69
  CLUS_2                           6                            61
  CLUS_3                          18                            66
D7V6, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           9                            50
  CLUS_2                          12                           104
  CLUS_3                          15                            42
D7V7, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           5                            42
  CLUS_2                          22                            76
  CLUS_3                           9                            81
D7V8, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                           4                            58
  CLUS_3                          30                           117

Clustering(8) Variable = Amp Peak  8(6p25.1) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE
  CLUS_1                          69                            11
  CLUS_2                          29                            40
  CLUS_3                          41                            54
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE
  CLUS_1                          44                            17
  CLUS_2                          55                            34
  CLUS_3                          40                            54
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE
  CLUS_1                          18                            24
  CLUS_2                          10                            13
  CLUS_3                          22                            12
  CLUS_4                          33                            11
D8V4, multiclass
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE
  CLUS_1                          43                            38
  CLUS_2                          36                            31
  CLUS_3                          56                            28
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE
  CLUS_1                          27                            32
  CLUS_2                          67                            49
  CLUS_3                          41                            16
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE
  CLUS_1                          25                            22
  CLUS_2                          71                            27
  CLUS_3                          39                            51
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P25.1) MUTATED AMP PEAK  8(6P25.1) WILD-TYPE
  CLUS_1                          14                            12
  CLUS_2                          21                            41
  CLUS_3                         100                            47

Clustering(9) Variable = Amp Peak  9(6q12) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        28                          52
  CLUS_2                         8                          61
  CLUS_3                        20                          75
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        17                          44
  CLUS_2                        19                          70
  CLUS_3                        20                          74
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         7                          35
  CLUS_2                         7                          16
  CLUS_3                         7                          27
  CLUS_4                        11                          33
D9V4, multiclass
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        15                          66
  CLUS_2                        23                          44
  CLUS_3                        16                          68
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        12                          47
  CLUS_2                        30                          86
  CLUS_3                        12                          45
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         8                          39
  CLUS_2                        28                          70
  CLUS_3                        19                          71
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         6                          20
  CLUS_2                        10                          52
  CLUS_3                        39                         108

Clustering(10) Variable = Amp Peak 10(7p22.3) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          43                            37
  CLUS_2                          55                            14
  CLUS_3                          33                            62
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          33                            28
  CLUS_2                          52                            37
  CLUS_3                          46                            48
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          24                            18
  CLUS_2                          13                            10
  CLUS_3                          22                            12
  CLUS_4                          22                            22
D10V4, multiclass
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          52                            29
  CLUS_2                          29                            38
  CLUS_3                          44                            40
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          33                            26
  CLUS_2                          54                            62
  CLUS_3                          38                            19
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          22                            25
  CLUS_2                          54                            44
  CLUS_3                          49                            41
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          13                            13
  CLUS_2                          37                            25
  CLUS_3                          75                            72

Clustering(11) Variable = Amp Peak 11(7q34) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        40                          40
  CLUS_2                        61                           8
  CLUS_3                        44                          51
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        33                          28
  CLUS_2                        53                          36
  CLUS_3                        59                          35
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        27                          15
  CLUS_2                        16                           7
  CLUS_3                        22                          12
  CLUS_4                        21                          23
D11V4, multiclass
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        55                          26
  CLUS_2                        37                          30
  CLUS_3                        45                          39
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        37                          22
  CLUS_2                        69                          47
  CLUS_3                        31                          26
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        31                          16
  CLUS_2                        56                          42
  CLUS_3                        52                          38
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        19                           7
  CLUS_2                        36                          26
  CLUS_3                        84                          63

Clustering(12) Variable = Amp Peak 12(8q11.21) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           37                             43
  CLUS_2                           42                             27
  CLUS_3                           22                             73
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           35                             26
  CLUS_2                           29                             60
  CLUS_3                           37                             57
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           18                             24
  CLUS_2                            9                             14
  CLUS_3                           11                             23
  CLUS_4                           20                             24
D12V4, multiclass
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           43                             38
  CLUS_2                           23                             44
  CLUS_3                           31                             53
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           30                             29
  CLUS_2                           39                             77
  CLUS_3                           28                             29
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                           37                             61
  CLUS_3                           42                             48
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           10                             16
  CLUS_2                           24                             38
  CLUS_3                           63                             84

Clustering(13) Variable = Amp Peak 13(8q24.21) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           47                             33
  CLUS_2                           45                             24
  CLUS_3                           26                             69
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           40                             21
  CLUS_2                           37                             52
  CLUS_3                           41                             53
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           18                             24
  CLUS_2                            9                             14
  CLUS_3                           18                             16
  CLUS_4                           24                             20
D13V4, multiclass
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           48                             33
  CLUS_2                           25                             42
  CLUS_3                           41                             43
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           33                             26
  CLUS_2                           49                             67
  CLUS_3                           32                             25
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                           46                             52
  CLUS_3                           47                             43
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                           25                             37
  CLUS_3                           77                             70

Clustering(14) Variable = Amp Peak 14(9p24.1) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  CLUS_1                           8                            72
  CLUS_2                           6                            63
  CLUS_3                           7                            88
D14V2, multiclass
        clus
vv       AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  CLUS_1                           8                            53
  CLUS_2                           7                            82
  CLUS_3                           6                            88
D14V3, multiclass
        clus
vv       AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                           1                            22
  CLUS_3                           3                            31
  CLUS_4                           6                            38
D14V4, multiclass
D14V5, multiclass
        clus
vv       AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  CLUS_1                           9                            72
  CLUS_2                           4                            63
  CLUS_3                           7                            77
D14V6, multiclass
        clus
vv       AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  CLUS_1                           5                            54
  CLUS_2                          11                           105
  CLUS_3                           4                            53
D14V7, multiclass
        clus
vv       AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  CLUS_1                           5                            42
  CLUS_2                           6                            92
  CLUS_3                          10                            80
D14V8, multiclass
        clus
vv       AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  CLUS_1                           3                            23
  CLUS_2                           6                            56
  CLUS_3                          12                           135

Clustering(15) Variable = Amp Peak 15(11q13.3) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           17                             63
  CLUS_2                           17                             52
  CLUS_3                           13                             82
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           12                             77
  CLUS_3                           19                             75
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                            3                             20
  CLUS_3                            7                             27
  CLUS_4                            6                             38
D15V4, multiclass
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           16                             65
  CLUS_2                           10                             57
  CLUS_3                           16                             68
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           11                             48
  CLUS_2                           20                             96
  CLUS_3                           11                             46
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            5                             42
  CLUS_2                           20                             78
  CLUS_3                           18                             72
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            2                             24
  CLUS_2                           11                             51
  CLUS_3                           30                            117

Clustering(16) Variable = Amp Peak 16(11q13.4) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE
  CLUS_1                           16                             64
  CLUS_2                           17                             52
  CLUS_3                           11                             84
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE
  CLUS_1                           17                             44
  CLUS_2                           11                             78
  CLUS_3                           16                             78
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                            4                             19
  CLUS_3                            5                             29
  CLUS_4                            7                             37
D16V4, multiclass
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE
  CLUS_1                           17                             64
  CLUS_2                            8                             59
  CLUS_3                           14                             70
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE
  CLUS_1                           12                             47
  CLUS_2                           16                            100
  CLUS_3                           11                             46
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE
  CLUS_1                            4                             43
  CLUS_2                           17                             81
  CLUS_3                           19                             71
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q13.4) MUTATED AMP PEAK 16(11Q13.4) WILD-TYPE
  CLUS_1                            1                             25
  CLUS_2                           11                             51
  CLUS_3                           28                            119

Clustering(17) Variable = Amp Peak 17(12q14.1) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           14                             66
  CLUS_2                           18                             51
  CLUS_3                            9                             86
D17V2, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           14                             47
  CLUS_2                           12                             77
  CLUS_3                           15                             79
D17V3, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                            2                             21
  CLUS_3                            7                             27
  CLUS_4                            6                             38
D17V4, multiclass
D17V5, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           16                             65
  CLUS_2                            7                             60
  CLUS_3                           17                             67
D17V6, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           11                             48
  CLUS_2                           14                            102
  CLUS_3                           15                             42
D17V7, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           19                             79
  CLUS_3                           14                             76
D17V8, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                            9                             53
  CLUS_3                           27                            120

Clustering(18) Variable = Amp Peak 18(12q15) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         13                           67
  CLUS_2                         18                           51
  CLUS_3                          8                           87
D18V2, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         10                           51
  CLUS_2                         15                           74
  CLUS_3                         14                           80
D18V3, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         10                           32
  CLUS_2                          2                           21
  CLUS_3                          7                           27
  CLUS_4                          6                           38
D18V4, multiclass
D18V5, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         14                           67
  CLUS_2                          9                           58
  CLUS_3                         15                           69
D18V6, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         10                           49
  CLUS_2                         17                           99
  CLUS_3                         11                           46
D18V7, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                          9                           38
  CLUS_2                         16                           82
  CLUS_3                         14                           76
D18V8, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                          6                           20
  CLUS_2                         10                           52
  CLUS_3                         23                          124

Clustering(19) Variable = Amp Peak 19(15q24.3) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE
  CLUS_1                           23                             57
  CLUS_2                           37                             32
  CLUS_3                           21                             74
D19V2, multiclass
        clus
vv       AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE
  CLUS_1                           21                             40
  CLUS_2                           32                             57
  CLUS_3                           28                             66
D19V3, multiclass
        clus
vv       AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                            8                             15
  CLUS_3                           11                             23
  CLUS_4                           13                             31
D19V4, multiclass
D19V5, multiclass
        clus
vv       AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE
  CLUS_1                           30                             51
  CLUS_2                           19                             48
  CLUS_3                           25                             59
D19V6, multiclass
        clus
vv       AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE
  CLUS_1                           21                             38
  CLUS_2                           36                             80
  CLUS_3                           17                             40
D19V7, multiclass
        clus
vv       AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE
  CLUS_1                           16                             31
  CLUS_2                           32                             66
  CLUS_3                           27                             63
D19V8, multiclass
        clus
vv       AMP PEAK 19(15Q24.3) MUTATED AMP PEAK 19(15Q24.3) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                           22                             40
  CLUS_3                           46                            101

Clustering(20) Variable = Amp Peak 20(17q25.3) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           43                             37
  CLUS_2                           23                             46
  CLUS_3                           21                             74
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           31                             30
  CLUS_2                           33                             56
  CLUS_3                           23                             71
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            8                             15
  CLUS_3                           20                             14
  CLUS_4                           17                             27
D20V4, multiclass
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           23                             58
  CLUS_2                           24                             43
  CLUS_3                           38                             46
D20V6, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           16                             43
  CLUS_2                           44                             72
  CLUS_3                           25                             32
D20V7, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                           44                             54
  CLUS_3                           27                             63
D20V8, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                           15                             47
  CLUS_3                           63                             84

Clustering(21) Variable = Amp Peak 21(19p13.2) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           15                             65
  CLUS_2                           24                             45
  CLUS_3                           11                             84
D21V2, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           20                             69
  CLUS_3                           14                             80
D21V3, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            5                             18
  CLUS_3                            5                             29
  CLUS_4                            8                             36
D21V4, multiclass
D21V5, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           23                             58
  CLUS_2                            8                             59
  CLUS_3                           17                             67
D21V6, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           18                             41
  CLUS_2                           17                             99
  CLUS_3                           13                             44
D21V7, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           12                             35
  CLUS_2                           17                             81
  CLUS_3                           19                             71
D21V8, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                           17                             45
  CLUS_3                           23                            124

Clustering(22) Variable = Amp Peak 22(20q13.2) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE
  CLUS_1                           49                             31
  CLUS_2                           48                             21
  CLUS_3                           32                             63
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE
  CLUS_1                           42                             19
  CLUS_2                           45                             44
  CLUS_3                           42                             52
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                           11                             12
  CLUS_3                           19                             15
  CLUS_4                           24                             20
D22V4, multiclass
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE
  CLUS_1                           53                             28
  CLUS_2                           27                             40
  CLUS_3                           43                             41
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE
  CLUS_1                           37                             22
  CLUS_2                           52                             64
  CLUS_3                           34                             23
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE
  CLUS_1                           26                             21
  CLUS_2                           50                             48
  CLUS_3                           48                             42
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q13.2) MUTATED AMP PEAK 22(20Q13.2) WILD-TYPE
  CLUS_1                           16                             10
  CLUS_2                           33                             29
  CLUS_3                           75                             72

Clustering(23) Variable = Amp Peak 23(22q13.2) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           38                             42
  CLUS_2                           36                             33
  CLUS_3                           28                             67
D23V2, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           31                             30
  CLUS_2                           40                             49
  CLUS_3                           31                             63
D23V3, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                           10                             13
  CLUS_3                           15                             19
  CLUS_4                           16                             28
D23V4, multiclass
D23V5, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           36                             45
  CLUS_2                           25                             42
  CLUS_3                           38                             46
D23V6, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           25                             34
  CLUS_2                           46                             70
  CLUS_3                           28                             29
D23V7, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           25                             22
  CLUS_2                           40                             58
  CLUS_3                           34                             56
D23V8, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                           22                             40
  CLUS_3                           65                             82

Clustering(24) Variable = Amp Peak 24(Xq28) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        20                          60
  CLUS_2                        12                          57
  CLUS_3                        10                          85
D24V2, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        15                          46
  CLUS_2                        19                          70
  CLUS_3                         8                          86
D24V3, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         6                          36
  CLUS_2                         1                          22
  CLUS_3                         6                          28
  CLUS_4                         8                          36
D24V4, multiclass
D24V5, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        16                          65
  CLUS_2                         6                          61
  CLUS_3                        17                          67
D24V6, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        12                          47
  CLUS_2                        13                         103
  CLUS_3                        14                          43
D24V7, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         9                          38
  CLUS_2                        18                          80
  CLUS_3                        14                          76
D24V8, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         3                          23
  CLUS_2                         8                          54
  CLUS_3                        30                         117

Clustering(25) Variable = Del Peak  1(1p36.31) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           29                             51
  CLUS_2                           15                             54
  CLUS_3                           15                             80
D25V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           27                             34
  CLUS_2                           19                             70
  CLUS_3                           13                             81
D25V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                            1                             22
  CLUS_3                            8                             26
  CLUS_4                           12                             32
D25V4, multiclass
D25V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           24                             57
  CLUS_2                           10                             57
  CLUS_3                           22                             62
D25V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             44
  CLUS_2                           17                             99
  CLUS_3                           24                             33
D25V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                           24                             74
  CLUS_3                           17                             73
D25V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                           10                             52
  CLUS_3                           39                            108

Clustering(26) Variable = Del Peak  2(1p22.1) mutation analysis
D26V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          25                            55
  CLUS_2                          22                            47
  CLUS_3                          16                            79
D26V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          28                            33
  CLUS_2                          16                            73
  CLUS_3                          19                            75
D26V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                           5                            18
  CLUS_3                          11                            23
  CLUS_4                          10                            34
D26V4, multiclass
D26V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          33                            48
  CLUS_2                           9                            58
  CLUS_3                          19                            65
D26V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          23                            36
  CLUS_2                          20                            96
  CLUS_3                          18                            39
D26V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          13                            34
  CLUS_2                          22                            76
  CLUS_3                          26                            64
D26V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           7                            19
  CLUS_2                          17                            45
  CLUS_3                          37                           110

Clustering(27) Variable = Del Peak  3(2q37.3) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          29                            51
  CLUS_2                          14                            55
  CLUS_3                          20                            75
D27V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          20                            41
  CLUS_2                          26                            63
  CLUS_3                          17                            77
D27V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                           6                            17
  CLUS_3                           9                            25
  CLUS_4                          14                            30
D27V4, multiclass
D27V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          17                            64
  CLUS_2                          13                            54
  CLUS_3                          30                            54
D27V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           9                            50
  CLUS_2                          23                            93
  CLUS_3                          28                            29
D27V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          11                            36
  CLUS_2                          33                            65
  CLUS_3                          16                            74
D27V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           6                            20
  CLUS_2                           8                            54
  CLUS_3                          46                           101

Clustering(28) Variable = Del Peak  4(3q23) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE
  CLUS_1                        15                          65
  CLUS_2                        13                          56
  CLUS_3                         9                          86
D28V2, multiclass
        clus
vv       DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE
  CLUS_1                        10                          51
  CLUS_2                        20                          69
  CLUS_3                         7                          87
D28V3, multiclass
        clus
vv       DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE
  CLUS_1                         6                          36
  CLUS_2                         5                          18
  CLUS_3                         5                          29
  CLUS_4                         8                          36
D28V4, multiclass
D28V5, multiclass
        clus
vv       DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE
  CLUS_1                        13                          68
  CLUS_2                         8                          59
  CLUS_3                        16                          68
D28V6, multiclass
        clus
vv       DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE
  CLUS_1                         8                          51
  CLUS_2                        18                          98
  CLUS_3                        11                          46
D28V7, multiclass
        clus
vv       DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE
  CLUS_1                         9                          38
  CLUS_2                        14                          84
  CLUS_3                        13                          77
D28V8, multiclass
        clus
vv       DEL PEAK  4(3Q23) MUTATED DEL PEAK  4(3Q23) WILD-TYPE
  CLUS_1                         3                          23
  CLUS_2                         8                          54
  CLUS_3                        25                         122

Clustering(29) Variable = Del Peak  5(4q22.1) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          14                            66
  CLUS_2                          24                            45
  CLUS_3                          18                            77
D29V2, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          17                            44
  CLUS_2                          16                            73
  CLUS_3                          23                            71
D29V3, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                           4                            19
  CLUS_3                           7                            27
  CLUS_4                          11                            33
D29V4, multiclass
D29V5, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          30                            51
  CLUS_2                           9                            58
  CLUS_3                          14                            70
D29V6, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          26                            33
  CLUS_2                          18                            98
  CLUS_3                           9                            48
D29V7, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          15                            32
  CLUS_2                          13                            85
  CLUS_3                          25                            65
D29V8, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           8                            18
  CLUS_2                          24                            38
  CLUS_3                          21                           126

Clustering(30) Variable = Del Peak  6(4q34.3) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          18                            62
  CLUS_2                          28                            41
  CLUS_3                          21                            74
D30V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          22                            39
  CLUS_2                          20                            69
  CLUS_3                          25                            69
D30V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                           7                            16
  CLUS_3                           8                            26
  CLUS_4                          10                            34
D30V4, multiclass
D30V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          31                            50
  CLUS_2                          13                            54
  CLUS_3                          21                            63
D30V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          28                            31
  CLUS_2                          25                            91
  CLUS_3                          12                            45
D30V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          17                            30
  CLUS_2                          19                            79
  CLUS_3                          30                            60
D30V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          10                            16
  CLUS_2                          27                            35
  CLUS_3                          29                           118

Clustering(31) Variable = Del Peak  7(5q11.2) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          21                            59
  CLUS_2                          23                            46
  CLUS_3                          23                            72
D31V2, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          12                            49
  CLUS_2                          33                            56
  CLUS_3                          22                            72
D31V3, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                           9                            33
  CLUS_2                           4                            19
  CLUS_3                          16                            18
  CLUS_4                          11                            33
D31V4, multiclass
D31V5, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          23                            58
  CLUS_2                          15                            52
  CLUS_3                          27                            57
D31V6, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          18                            41
  CLUS_2                          26                            90
  CLUS_3                          21                            36
D31V7, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          15                            32
  CLUS_2                          27                            71
  CLUS_3                          23                            67
D31V8, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                           9                            17
  CLUS_2                          15                            47
  CLUS_3                          41                           106

Clustering(32) Variable = Del Peak  8(5q31.3) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE
  CLUS_1                          24                            56
  CLUS_2                          30                            39
  CLUS_3                          36                            59
D32V2, multiclass
        clus
vv       DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE
  CLUS_1                          11                            50
  CLUS_2                          48                            41
  CLUS_3                          31                            63
D32V3, multiclass
        clus
vv       DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                           6                            17
  CLUS_3                          18                            16
  CLUS_4                          14                            30
D32V4, multiclass
D32V5, multiclass
        clus
vv       DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE
  CLUS_1                          32                            49
  CLUS_2                          23                            44
  CLUS_3                          33                            51
D32V6, multiclass
        clus
vv       DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE
  CLUS_1                          25                            34
  CLUS_2                          43                            73
  CLUS_3                          20                            37
D32V7, multiclass
        clus
vv       DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE
  CLUS_1                          21                            26
  CLUS_2                          35                            63
  CLUS_3                          32                            58
D32V8, multiclass
        clus
vv       DEL PEAK  8(5Q31.3) MUTATED DEL PEAK  8(5Q31.3) WILD-TYPE
  CLUS_1                          13                            13
  CLUS_2                          21                            41
  CLUS_3                          54                            93

Clustering(33) Variable = Del Peak  9(6q26) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        62                          18
  CLUS_2                        49                          20
  CLUS_3                        42                          53
D33V2, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        43                          18
  CLUS_2                        61                          28
  CLUS_3                        49                          45
D33V3, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        28                          14
  CLUS_2                        11                          12
  CLUS_3                        23                          11
  CLUS_4                        30                          14
D33V4, multiclass
D33V5, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        60                          21
  CLUS_2                        31                          36
  CLUS_3                        56                          28
D33V6, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        41                          18
  CLUS_2                        67                          49
  CLUS_3                        39                          18
D33V7, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        29                          18
  CLUS_2                        66                          32
  CLUS_3                        53                          37
D33V8, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        16                          10
  CLUS_2                        38                          24
  CLUS_3                        94                          53

Clustering(34) Variable = Del Peak 10(8p23.3) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE
  CLUS_1                          28                            52
  CLUS_2                          15                            54
  CLUS_3                          18                            77
D34V2, multiclass
        clus
vv       DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE
  CLUS_1                          20                            41
  CLUS_2                          25                            64
  CLUS_3                          16                            78
D34V3, multiclass
        clus
vv       DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                           2                            21
  CLUS_3                          13                            21
  CLUS_4                          18                            26
D34V4, multiclass
D34V5, multiclass
        clus
vv       DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE
  CLUS_1                          21                            60
  CLUS_2                          12                            55
  CLUS_3                          27                            57
D34V6, multiclass
        clus
vv       DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE
  CLUS_1                          14                            45
  CLUS_2                          29                            87
  CLUS_3                          17                            40
D34V7, multiclass
        clus
vv       DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE
  CLUS_1                          12                            35
  CLUS_2                          30                            68
  CLUS_3                          17                            73
D34V8, multiclass
        clus
vv       DEL PEAK 10(8P23.3) MUTATED DEL PEAK 10(8P23.3) WILD-TYPE
  CLUS_1                           6                            20
  CLUS_2                          12                            50
  CLUS_3                          41                           106

Clustering(35) Variable = Del Peak 11(9p23) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        61                          19
  CLUS_2                        59                          10
  CLUS_3                        48                          47
D35V2, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        44                          17
  CLUS_2                        68                          21
  CLUS_3                        56                          38
D35V3, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        31                          11
  CLUS_2                        15                           8
  CLUS_3                        23                          11
  CLUS_4                        29                          15
D35V4, multiclass
D35V5, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        67                          14
  CLUS_2                        38                          29
  CLUS_3                        53                          31
D35V6, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        48                          11
  CLUS_2                        68                          48
  CLUS_3                        42                          15
D35V7, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        30                          17
  CLUS_2                        64                          34
  CLUS_3                        65                          25
D35V8, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        15                          11
  CLUS_2                        39                          23
  CLUS_3                       105                          42

Clustering(36) Variable = Del Peak 12(9p21.3) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          66                            14
  CLUS_2                          67                             2
  CLUS_3                          56                            39
D36V2, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          52                             9
  CLUS_2                          76                            13
  CLUS_3                          61                            33
D36V3, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          34                             8
  CLUS_2                          16                             7
  CLUS_3                          27                             7
  CLUS_4                          35                             9
D36V4, multiclass
D36V5, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          75                             6
  CLUS_2                          42                            25
  CLUS_3                          62                            22
D36V6, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          53                             6
  CLUS_2                          78                            38
  CLUS_3                          48                             9
D36V7, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          35                            12
  CLUS_2                          73                            25
  CLUS_3                          72                            18
D36V8, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          18                             8
  CLUS_2                          47                            15
  CLUS_3                         115                            32

Clustering(37) Variable = Del Peak 13(10p15.3) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  CLUS_1                           44                             36
  CLUS_2                           54                             15
  CLUS_3                           35                             60
D37V2, multiclass
        clus
vv       DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  CLUS_1                           42                             19
  CLUS_2                           49                             40
  CLUS_3                           42                             52
D37V3, multiclass
        clus
vv       DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  CLUS_1                           27                             15
  CLUS_2                           13                             10
  CLUS_3                           18                             16
  CLUS_4                           21                             23
D37V4, multiclass
D37V5, multiclass
        clus
vv       DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  CLUS_1                           61                             20
  CLUS_2                           28                             39
  CLUS_3                           38                             46
D37V6, multiclass
        clus
vv       DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  CLUS_1                           43                             16
  CLUS_2                           52                             64
  CLUS_3                           32                             25
D37V7, multiclass
        clus
vv       DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                           53                             45
  CLUS_3                           56                             34
D37V8, multiclass
        clus
vv       DEL PEAK 13(10P15.3) MUTATED DEL PEAK 13(10P15.3) WILD-TYPE
  CLUS_1                           11                             15
  CLUS_2                           36                             26
  CLUS_3                           83                             64

Clustering(38) Variable = Del Peak 14(10q23.31) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                            47                              33
  CLUS_2                            60                               9
  CLUS_3                            42                              53
D38V2, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                            42                              19
  CLUS_2                            58                              31
  CLUS_3                            49                              45
D38V3, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                            29                              13
  CLUS_2                            15                               8
  CLUS_3                            19                              15
  CLUS_4                            21                              23
D38V4, multiclass
D38V5, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                            64                              17
  CLUS_2                            34                              33
  CLUS_3                            45                              39
D38V6, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                            46                              13
  CLUS_2                            62                              54
  CLUS_3                            35                              22
D38V7, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                            32                              15
  CLUS_2                            57                              41
  CLUS_3                            55                              35
D38V8, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                            18                               8
  CLUS_2                            36                              26
  CLUS_3                            90                              57

Clustering(39) Variable = Del Peak 15(10q26.3) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE
  CLUS_1                           45                             35
  CLUS_2                           60                              9
  CLUS_3                           46                             49
D39V2, multiclass
        clus
vv       DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE
  CLUS_1                           41                             20
  CLUS_2                           57                             32
  CLUS_3                           53                             41
D39V3, multiclass
        clus
vv       DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE
  CLUS_1                           28                             14
  CLUS_2                           15                              8
  CLUS_3                           19                             15
  CLUS_4                           22                             22
D39V4, multiclass
D39V5, multiclass
        clus
vv       DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE
  CLUS_1                           66                             15
  CLUS_2                           35                             32
  CLUS_3                           43                             41
D39V6, multiclass
        clus
vv       DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE
  CLUS_1                           48                             11
  CLUS_2                           64                             52
  CLUS_3                           32                             25
D39V7, multiclass
        clus
vv       DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE
  CLUS_1                           30                             17
  CLUS_2                           56                             42
  CLUS_3                           60                             30
D39V8, multiclass
        clus
vv       DEL PEAK 15(10Q26.3) MUTATED DEL PEAK 15(10Q26.3) WILD-TYPE
  CLUS_1                           15                             11
  CLUS_2                           38                             24
  CLUS_3                           93                             54

Clustering(40) Variable = Del Peak 16(11q23.3) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  CLUS_1                           62                             18
  CLUS_2                           33                             36
  CLUS_3                           39                             56
D40V2, multiclass
        clus
vv       DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  CLUS_1                           40                             21
  CLUS_2                           49                             40
  CLUS_3                           45                             49
D40V3, multiclass
        clus
vv       DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  CLUS_1                           21                             21
  CLUS_2                           11                             12
  CLUS_3                           24                             10
  CLUS_4                           26                             18
D40V4, multiclass
D40V5, multiclass
        clus
vv       DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  CLUS_1                           44                             37
  CLUS_2                           33                             34
  CLUS_3                           52                             32
D40V6, multiclass
        clus
vv       DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  CLUS_1                           31                             28
  CLUS_2                           60                             56
  CLUS_3                           38                             19
D40V7, multiclass
        clus
vv       DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  CLUS_1                           29                             18
  CLUS_2                           58                             40
  CLUS_3                           44                             46
D40V8, multiclass
        clus
vv       DEL PEAK 16(11Q23.3) MUTATED DEL PEAK 16(11Q23.3) WILD-TYPE
  CLUS_1                           14                             12
  CLUS_2                           27                             35
  CLUS_3                           90                             57

Clustering(41) Variable = Del Peak 17(12p13.31) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE
  CLUS_1                            14                              66
  CLUS_2                             8                              61
  CLUS_3                            15                              80
D41V2, multiclass
        clus
vv       DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE
  CLUS_1                             9                              52
  CLUS_2                            18                              71
  CLUS_3                            10                              84
D41V3, multiclass
        clus
vv       DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE
  CLUS_1                            10                              32
  CLUS_2                             2                              21
  CLUS_3                             4                              30
  CLUS_4                             9                              35
D41V4, multiclass
D41V5, multiclass
        clus
vv       DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE
  CLUS_1                            15                              66
  CLUS_2                            12                              55
  CLUS_3                             8                              76
D41V6, multiclass
        clus
vv       DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE
  CLUS_1                             9                              50
  CLUS_2                            18                              98
  CLUS_3                             8                              49
D41V7, multiclass
        clus
vv       DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE
  CLUS_1                             8                              39
  CLUS_2                            11                              87
  CLUS_3                            16                              74
D41V8, multiclass
        clus
vv       DEL PEAK 17(12P13.31) MUTATED DEL PEAK 17(12P13.31) WILD-TYPE
  CLUS_1                             4                              22
  CLUS_2                            10                              52
  CLUS_3                            21                             126

Clustering(42) Variable = Del Peak 18(12q23.3) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE
  CLUS_1                           25                             55
  CLUS_2                           16                             53
  CLUS_3                           17                             78
D42V2, multiclass
        clus
vv       DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           29                             60
  CLUS_3                           13                             81
D42V3, multiclass
        clus
vv       DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                            3                             20
  CLUS_3                            8                             26
  CLUS_4                           11                             33
D42V4, multiclass
D42V5, multiclass
        clus
vv       DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE
  CLUS_1                           21                             60
  CLUS_2                           16                             51
  CLUS_3                           18                             66
D42V6, multiclass
        clus
vv       DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE
  CLUS_1                           12                             47
  CLUS_2                           26                             90
  CLUS_3                           17                             40
D42V7, multiclass
        clus
vv       DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           22                             76
  CLUS_3                           22                             68
D42V8, multiclass
        clus
vv       DEL PEAK 18(12Q23.3) MUTATED DEL PEAK 18(12Q23.3) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                           13                             49
  CLUS_3                           37                            110

Clustering(43) Variable = Del Peak 19(12q24.33) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  CLUS_1                            26                              54
  CLUS_2                            13                              56
  CLUS_3                            18                              77
D43V2, multiclass
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  CLUS_1                            20                              41
  CLUS_2                            24                              65
  CLUS_3                            13                              81
D43V3, multiclass
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  CLUS_1                            11                              31
  CLUS_2                             3                              20
  CLUS_3                             7                              27
  CLUS_4                            12                              32
D43V4, multiclass
D43V5, multiclass
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  CLUS_1                            21                              60
  CLUS_2                            16                              51
  CLUS_3                            17                              67
D43V6, multiclass
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  CLUS_1                            12                              47
  CLUS_2                            25                              91
  CLUS_3                            17                              40
D43V7, multiclass
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  CLUS_1                            11                              36
  CLUS_2                            21                              77
  CLUS_3                            22                              68
D43V8, multiclass
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  CLUS_1                             5                              21
  CLUS_2                            11                              51
  CLUS_3                            38                             109

Clustering(44) Variable = Del Peak 20(13q34) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         17                           63
  CLUS_2                         23                           46
  CLUS_3                         18                           77
D44V2, multiclass
        clus
vv       DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE
  CLUS_1                          6                           55
  CLUS_2                         22                           67
  CLUS_3                         30                           64
D44V3, multiclass
        clus
vv       DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         12                           30
  CLUS_2                          8                           15
  CLUS_3                         10                           24
  CLUS_4                          5                           39
D44V4, multiclass
D44V5, multiclass
        clus
vv       DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         19                           62
  CLUS_2                         19                           48
  CLUS_3                         17                           67
D44V6, multiclass
        clus
vv       DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         15                           44
  CLUS_2                         30                           86
  CLUS_3                         10                           47
D44V7, multiclass
        clus
vv       DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE
  CLUS_1                          8                           39
  CLUS_2                         24                           74
  CLUS_3                         24                           66
D44V8, multiclass
        clus
vv       DEL PEAK 20(13Q34) MUTATED DEL PEAK 20(13Q34) WILD-TYPE
  CLUS_1                          2                           24
  CLUS_2                         18                           44
  CLUS_3                         36                          111

Clustering(45) Variable = Del Peak 21(14q32.2) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE
  CLUS_1                           27                             53
  CLUS_2                           39                             30
  CLUS_3                           17                             78
D45V2, multiclass
        clus
vv       DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE
  CLUS_1                           24                             37
  CLUS_2                           30                             59
  CLUS_3                           29                             65
D45V3, multiclass
        clus
vv       DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                            8                             15
  CLUS_3                            7                             27
  CLUS_4                           16                             28
D45V4, multiclass
D45V5, multiclass
        clus
vv       DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE
  CLUS_1                           36                             45
  CLUS_2                           22                             45
  CLUS_3                           20                             64
D45V6, multiclass
        clus
vv       DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE
  CLUS_1                           24                             35
  CLUS_2                           36                             80
  CLUS_3                           18                             39
D45V7, multiclass
        clus
vv       DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE
  CLUS_1                           16                             31
  CLUS_2                           29                             69
  CLUS_3                           33                             57
D45V8, multiclass
        clus
vv       DEL PEAK 21(14Q32.2) MUTATED DEL PEAK 21(14Q32.2) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                           24                             38
  CLUS_3                           46                            101

Clustering(46) Variable = Del Peak 22(15q13.3) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE
  CLUS_1                           29                             51
  CLUS_2                           11                             58
  CLUS_3                           14                             81
D46V2, multiclass
        clus
vv       DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           23                             66
  CLUS_3                           15                             79
D46V3, multiclass
        clus
vv       DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            3                             20
  CLUS_3                            6                             28
  CLUS_4                           13                             31
D46V4, multiclass
D46V5, multiclass
        clus
vv       DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE
  CLUS_1                           20                             61
  CLUS_2                           12                             55
  CLUS_3                           22                             62
D46V6, multiclass
        clus
vv       DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE
  CLUS_1                           12                             47
  CLUS_2                           22                             94
  CLUS_3                           20                             37
D46V7, multiclass
        clus
vv       DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           21                             77
  CLUS_3                           24                             66
D46V8, multiclass
        clus
vv       DEL PEAK 22(15Q13.3) MUTATED DEL PEAK 22(15Q13.3) WILD-TYPE
  CLUS_1                            3                             23
  CLUS_2                           14                             48
  CLUS_3                           36                            111

Clustering(47) Variable = Del Peak 23(15q15.3) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE
  CLUS_1                           30                             50
  CLUS_2                           11                             58
  CLUS_3                           15                             80
D47V2, multiclass
        clus
vv       DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           24                             65
  CLUS_3                           16                             78
D47V3, multiclass
        clus
vv       DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                            4                             19
  CLUS_3                            7                             27
  CLUS_4                           15                             29
D47V4, multiclass
D47V5, multiclass
        clus
vv       DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE
  CLUS_1                           18                             63
  CLUS_2                           15                             52
  CLUS_3                           22                             62
D47V6, multiclass
        clus
vv       DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE
  CLUS_1                           10                             49
  CLUS_2                           26                             90
  CLUS_3                           19                             38
D47V7, multiclass
        clus
vv       DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE
  CLUS_1                            7                             40
  CLUS_2                           25                             73
  CLUS_3                           23                             67
D47V8, multiclass
        clus
vv       DEL PEAK 23(15Q15.3) MUTATED DEL PEAK 23(15Q15.3) WILD-TYPE
  CLUS_1                            2                             24
  CLUS_2                           13                             49
  CLUS_3                           40                            107

Clustering(48) Variable = Del Peak 24(16p13.3) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           15                             65
  CLUS_2                           15                             54
  CLUS_3                           16                             79
D48V2, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           14                             47
  CLUS_2                           22                             67
  CLUS_3                           10                             84
D48V3, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            4                             19
  CLUS_3                            3                             31
  CLUS_4                           12                             32
D48V4, multiclass
D48V5, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           13                             68
  CLUS_2                           12                             55
  CLUS_3                           21                             63
D48V6, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                           28                             88
  CLUS_3                            9                             48
D48V7, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           11                             36
  CLUS_2                           23                             75
  CLUS_3                           11                             79
D48V8, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                           11                             51
  CLUS_3                           30                            117

Clustering(49) Variable = Del Peak 25(16q12.1) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE
  CLUS_1                           27                             53
  CLUS_2                           28                             41
  CLUS_3                           26                             69
D49V2, multiclass
        clus
vv       DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE
  CLUS_1                           22                             39
  CLUS_2                           33                             56
  CLUS_3                           26                             68
D49V3, multiclass
        clus
vv       DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                            7                             16
  CLUS_3                            6                             28
  CLUS_4                           23                             21
D49V4, multiclass
D49V5, multiclass
        clus
vv       DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE
  CLUS_1                           22                             59
  CLUS_2                           23                             44
  CLUS_3                           33                             51
D49V6, multiclass
        clus
vv       DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE
  CLUS_1                           18                             41
  CLUS_2                           40                             76
  CLUS_3                           20                             37
D49V7, multiclass
        clus
vv       DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE
  CLUS_1                           14                             33
  CLUS_2                           40                             58
  CLUS_3                           24                             66
D49V8, multiclass
        clus
vv       DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                           18                             44
  CLUS_3                           55                             92

Clustering(50) Variable = Del Peak 26(16q24.3) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE
  CLUS_1                           31                             49
  CLUS_2                           29                             40
  CLUS_3                           29                             66
D50V2, multiclass
        clus
vv       DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE
  CLUS_1                           25                             36
  CLUS_2                           34                             55
  CLUS_3                           30                             64
D50V3, multiclass
        clus
vv       DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                            6                             17
  CLUS_3                           13                             21
  CLUS_4                           21                             23
D50V4, multiclass
D50V5, multiclass
        clus
vv       DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE
  CLUS_1                           22                             59
  CLUS_2                           24                             43
  CLUS_3                           39                             45
D50V6, multiclass
        clus
vv       DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE
  CLUS_1                           17                             42
  CLUS_2                           48                             68
  CLUS_3                           20                             37
D50V7, multiclass
        clus
vv       DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                           45                             53
  CLUS_3                           24                             66
D50V8, multiclass
        clus
vv       DEL PEAK 26(16Q24.3) MUTATED DEL PEAK 26(16Q24.3) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                           18                             44
  CLUS_3                           62                             85

Clustering(51) Variable = Del Peak 27(19p13.3) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           29                             51
  CLUS_2                           23                             46
  CLUS_3                           19                             76
D51V2, multiclass
        clus
vv       DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           17                             44
  CLUS_2                           30                             59
  CLUS_3                           24                             70
D51V3, multiclass
        clus
vv       DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            7                             16
  CLUS_3                           19                             15
  CLUS_4                            9                             35
D51V4, multiclass
D51V5, multiclass
        clus
vv       DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           17                             64
  CLUS_2                           15                             52
  CLUS_3                           37                             47
D51V6, multiclass
        clus
vv       DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           11                             48
  CLUS_2                           38                             78
  CLUS_3                           20                             37
D51V7, multiclass
        clus
vv       DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                           32                             66
  CLUS_3                           23                             67
D51V8, multiclass
        clus
vv       DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                           16                             46
  CLUS_3                           48                             99
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
