GDAC_MergedClusteringPipeline Execution Log 2:05 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/STAD-TP/2861363/3.GDAC_CNMFselectcluster.Finished/STAD-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/STAD-TP/2902671/3.GDAC_CNMFselectcluster.Finished/STAD-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile STAD-TP
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/STAD-TP/2901153/3.GDAC_CNMFselectcluster.Finished/STAD-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/STAD-TP/2859945/3.GDAC_selectBestcluster.Finished/STAD-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/STAD-TP/2860183/3.GDAC_CNMFselectcluster.Finished/STAD-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/STAD-TP/2860182/3.GDAC_selectBestcluster.Finished/STAD-TP.bestclus.txt
Execution Times:
Submitted: 02:05:52 09-04-13
Completed:
Elapsed: 07 hrs 32 mins 39 secs

step 1. GDAC_mergedClustering [id: 374702] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/STAD-TP/2861363/3.GDAC_CNMFselectcluster.Finished/STAD-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/STAD-TP/2902671/3.GDAC_CNMFselectcluster.Finished/STAD-TP.bestclus.txt
mergedfile STAD-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/STAD-TP/2901153/3.GDAC_CNMFselectcluster.Finished/STAD-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/STAD-TP/2859945/3.GDAC_selectBestcluster.Finished/STAD-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/STAD-TP/2860183/3.GDAC_CNMFselectcluster.Finished/STAD-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/STAD-TP/2860182/3.GDAC_selectBestcluster.Finished/STAD-TP.bestclus.txt
Output Files:
 STAD-TP.mergedcluster.txt
 STAD-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 02:05:59 09-04-13
Completed: 02:06:41 09-04-13
Elapsed: 00 hrs 00 mins 41 secs

step 2. GDAC_mergedReport [id: 374703]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster STAD-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 02:06:00 09-04-13
Completed: 09:38:31 09-04-13
Elapsed: 07 hrs 32 mins 31 secs