
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/376899/STAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD-TP/2844303/1.GDAC_clinicalDataPicker.Finished/STAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=178, in cluster file=116, common to both=116
[1]  47 116
[1] "CBWD1 MUTATION ANALYSIS"
[1] 3
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             14             102 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             14             102 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            14            102 
  KRAS MUTATED KRAS WILD-TYPE 
            14            102 
[1] "PGM5 MUTATION ANALYSIS"
[1] 3
  PGM5 MUTATED PGM5 WILD-TYPE 
            16            100 
  PGM5 MUTATED PGM5 WILD-TYPE 
            16            100 
[1] "RPL22 MUTATION ANALYSIS"
[1] 3
  RPL22 MUTATED RPL22 WILD-TYPE 
              9             107 
  RPL22 MUTATED RPL22 WILD-TYPE 
              9             107 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            52             64 
  TP53 MUTATED TP53 WILD-TYPE 
            52             64 
[1] "TRIM48 MUTATION ANALYSIS"
[1] 3
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              10              106 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              10              106 
[1] "XPOT MUTATION ANALYSIS"
[1] 3
  XPOT MUTATED XPOT WILD-TYPE 
             6            110 
  XPOT MUTATED XPOT WILD-TYPE 
             6            110 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              24               92 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              24               92 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
              13              103 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
              13              103 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             7            109 
  RHOA MUTATED RHOA WILD-TYPE 
             7            109 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              22               94 
  ARID1A MUTATED ARID1A WILD-TYPE 
              22               94 
[1] "OR8H3 MUTATION ANALYSIS"
[1] 3
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10             106 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10             106 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             12             104 
  EDNRB MUTATED EDNRB WILD-TYPE 
             12             104 
[1] "ZNF804B MUTATION ANALYSIS"
[1] 3
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               18                98 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               18                98 
[1] "IRF2 MUTATION ANALYSIS"
[1] 3
  IRF2 MUTATED IRF2 WILD-TYPE 
             8            108 
  IRF2 MUTATED IRF2 WILD-TYPE 
             8            108 
[1] "IAPP MUTATION ANALYSIS"
[1] 3
  IAPP MUTATED IAPP WILD-TYPE 
             4            112 
  IAPP MUTATED IAPP WILD-TYPE 
             4            112 
[1] "PCDH15 MUTATION ANALYSIS"
[1] 3
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              22               94 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              22               94 
[1] "SPRYD5 MUTATION ANALYSIS"
[1] 3
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               8              108 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               8              108 
[1] "TUSC3 MUTATION ANALYSIS"
[1] 3
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              9             107 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              9             107 
[1] "FGF22 MUTATION ANALYSIS"
[1] 3
  FGF22 MUTATED FGF22 WILD-TYPE 
              3             113 
  FGF22 MUTATED FGF22 WILD-TYPE 
              3             113 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
              9             107 
  HLA-B MUTATED HLA-B WILD-TYPE 
              9             107 
[1] "PTH2 MUTATION ANALYSIS"
[1] 3
  PTH2 MUTATED PTH2 WILD-TYPE 
             3            113 
  PTH2 MUTATED PTH2 WILD-TYPE 
             3            113 
[1] "C17ORF63 MUTATION ANALYSIS"
[1] 3
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 3                113 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 3                113 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             109 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             109 
[1] "POTEG MUTATION ANALYSIS"
[1] 3
  POTEG MUTATED POTEG WILD-TYPE 
              6             110 
  POTEG MUTATED POTEG WILD-TYPE 
              6             110 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
             13             103 
  RNF43 MUTATED RNF43 WILD-TYPE 
             13             103 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               12               104 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               12               104 
[1] "PHF2 MUTATION ANALYSIS"
[1] 3
  PHF2 MUTATED PHF2 WILD-TYPE 
            12            104 
  PHF2 MUTATED PHF2 WILD-TYPE 
            12            104 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            14            102 
  TPTE MUTATED TPTE WILD-TYPE 
            14            102 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            11            105 
  CDH1 MUTATED CDH1 WILD-TYPE 
            11            105 
[1] "CPS1 MUTATION ANALYSIS"
[1] 3
  CPS1 MUTATED CPS1 WILD-TYPE 
            13            103 
  CPS1 MUTATED CPS1 WILD-TYPE 
            13            103 
[1] "INO80E MUTATION ANALYSIS"
[1] 3
  INO80E MUTATED INO80E WILD-TYPE 
               5              111 
  INO80E MUTATED INO80E WILD-TYPE 
               5              111 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
             5            111 
  ELF3 MUTATED ELF3 WILD-TYPE 
             5            111 
[1] "PARK2 MUTATION ANALYSIS"
[1] 3
  PARK2 MUTATED PARK2 WILD-TYPE 
              9             107 
  PARK2 MUTATED PARK2 WILD-TYPE 
              9             107 
[1] "LARP4B MUTATION ANALYSIS"
[1] 3
  LARP4B MUTATED LARP4B WILD-TYPE 
               5              111 
  LARP4B MUTATED LARP4B WILD-TYPE 
               5              111 
[1] "OR6K3 MUTATION ANALYSIS"
[1] 3
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              6             110 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              6             110 
[1] "TM7SF4 MUTATION ANALYSIS"
[1] 3
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               7              109 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               7              109 
[1] "UPF3A MUTATION ANALYSIS"
[1] 3
  UPF3A MUTATED UPF3A WILD-TYPE 
              6             110 
  UPF3A MUTATED UPF3A WILD-TYPE 
              6             110 
[1] "C7ORF63 MUTATION ANALYSIS"
[1] 3
  C7ORF63 MUTATED C7ORF63 WILD-TYPE 
                5               111 
  C7ORF63 MUTATED C7ORF63 WILD-TYPE 
                5               111 
[1] "KDM4B MUTATION ANALYSIS"
[1] 3
  KDM4B MUTATED KDM4B WILD-TYPE 
             10             106 
  KDM4B MUTATED KDM4B WILD-TYPE 
             10             106 
[1] "KIAA0748 MUTATION ANALYSIS"
[1] 3
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 7                109 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 7                109 
[1] "OR8B4 MUTATION ANALYSIS"
[1] 3
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              3             113 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              3             113 
[1] "POM121L12 MUTATION ANALYSIS"
[1] 3
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                  7                 109 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                  7                 109 
[1] "RASA1 MUTATION ANALYSIS"
[1] 3
  RASA1 MUTATED RASA1 WILD-TYPE 
              9             107 
  RASA1 MUTATED RASA1 WILD-TYPE 
              9             107 
[1] "SLITRK6 MUTATION ANALYSIS"
[1] 3
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
               10               106 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
               10               106 
[1] "TP53TG5 MUTATION ANALYSIS"
[1] 3
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                4               112 
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                4               112 
[1] "LHCGR MUTATION ANALYSIS"
[1] 3
  LHCGR MUTATED LHCGR WILD-TYPE 
              7             109 
  LHCGR MUTATED LHCGR WILD-TYPE 
              7             109 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "TUMORSTAGE"                            
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "COMPLETENESS.OF.RESECTION"             
[16] "NUMBER.OF.LYMPH.NODES"                 
[17] "BATCHNUMBER"                           

Input Data has 17 rows and 116 columns.

[1] "Batch" "17"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4191 TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-4292 TCGA-BR-4294 TCGA-BR-4357 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 TCGA-BR-4367 TCGA-BR-4368 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 
          NA           NA           NA           29           NA           NA 
TCGA-BR-6455 TCGA-BR-6456 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
          43           NA           41           41           25           19 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
          19           52           66           30           37           20 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
          34           23           20            8           25           21 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
          11           15            9            2           12          609 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
          92          822          485           31         1611          245 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4442 TCGA-CG-4443 TCGA-CG-4444 
        1644          122          426           NA          912         1431 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
         580          366          669           31          273          576 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 
         215          365           31           NA           NA           31 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
          31          211           31           31           30          182 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
          29         2131          366          457          881          944 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
        1980          122         1674          641          243          263 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
         109          138          298          476          293          249 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
         210           21          181          201          126           51 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
         111          143          123           89          130           19 
TCGA-F1-6177 TCGA-F1-6874 
         199           61 
Variable 1:'AGE':	nDistinctValues=42,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=70,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                       "GENDER"                   
[3] "HISTOLOGICAL.TYPE"         "PATHOLOGY.T"              
[5] "PATHOLOGY.N"               "PATHOLOGICSPREAD(M)"      
[7] "TUMOR.STAGE"               "COMPLETENESS.OF.RESECTION"
[9] "NUMBER.OF.LYMPH.NODES"    
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
18 32 29 21 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 116 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=42, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 4 46 41 15 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 4 46 41 15 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 4 46 41 15 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 4 46 41 15 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
35 39 19 12 
[1] "table(vv)"
vv
N0 N1 N2 N3 
35 39 19 12 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
35 39 19 12 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
35 39 19 12 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 18  32  29  21 
[1] "table(vv)"
vv
  I  II III  IV 
 18  32  29  21 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 18  32  29  21 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 18  32  29  21 
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=22, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CBWD1 MUTATION ANALYSIS
D1V1, survival
                 sevent
clus2              0  1
  CBWD1 MUTATED    5  3
  CBWD1 WILD-TYPE 66 11
  CBWD1 MUTATED CBWD1 WILD-TYPE 
              8              77 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
              3              11 
$`CBWD1 MUTATED`
TCGA-BR-6452 TCGA-BR-6852 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4460 TCGA-CG-5721 
        0.95         0.26        15.95         1.02        21.99         5.98 
TCGA-CG-5726 TCGA-F1-6177 
       28.96         6.54 

$`CBWD1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
        3.02        27.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 
       14.01        29.98        47.05        19.07        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        8.98        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        15.02        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         2.01 

  CBWD1 MUTATED CBWD1 WILD-TYPE 
           0.26            0.07 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
          28.96           70.06 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
           6.26            4.01 
[1] "0.3 - 29.0 (6.3)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
[1] "hr=" "1.9"
D1V2, continuous
D1V3, binary
                 cls
clus               0  1
  CBWD1 MUTATED    8  6
  CBWD1 WILD-TYPE 38 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBWD1 MUTATED      8    6
  CBWD1 WILD-TYPE   38   64
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  FEMALE             8              38
  MALE               6              64
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  CBWD1 MUTATED                                       0
  CBWD1 WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  CBWD1 MUTATED                                                       10
  CBWD1 WILD-TYPE                                                     47
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  CBWD1 MUTATED                                                   0
  CBWD1 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  CBWD1 MUTATED                                                    0
  CBWD1 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  CBWD1 MUTATED                                                  0
  CBWD1 WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  CBWD1 MUTATED                                                                        4
  CBWD1 WILD-TYPE                                                                     20
D1V4, multiclass
                 vv
clus              T1 T2 T3 T4
  CBWD1 MUTATED    3  2  3  4
  CBWD1 WILD-TYPE  1 44 38 11
D1V5, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  T1             3               1
  T2             2              44
  T3             3              38
  T4             4              11
                 vv
clus              N0 N1 N2 N3
  CBWD1 MUTATED    5  5  2  0
  CBWD1 WILD-TYPE 30 34 17 12
D1V6, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  N0             5              30
  N1             5              34
  N2             2              17
  N3             0              12
                 vv
clus              M0 M1 MX
  CBWD1 MUTATED   11  2  1
  CBWD1 WILD-TYPE 88 11  3
D1V7, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  M0            11              88
  M1             2              11
  MX             1               3
                 vv
clus               I II III IV
  CBWD1 MUTATED    3  3   1  4
  CBWD1 WILD-TYPE 15 29  28 17
D1V8, multiclass
     clus
vv    CBWD1 MUTATED CBWD1 WILD-TYPE
  I               3              15
  II              3              29
  III             1              28
  IV              4              17
                 vv
clus              R0 R1 R2 RX
  CBWD1 MUTATED    7  0  2  5
  CBWD1 WILD-TYPE 60  5 10 20
D1V9, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  R0             7              60
  R1             0               5
  R2             2              10
  RX             5              20
D1V10, continuous

Clustering(2) Variable = KRAS MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  KRAS MUTATED    6  0
  KRAS WILD-TYPE 65 14
  KRAS MUTATED KRAS WILD-TYPE 
             6             79 
  KRAS MUTATED KRAS WILD-TYPE 
             0             14 
$`KRAS MUTATED`
TCGA-BR-6705 TCGA-BR-6802 TCGA-CD-5798 TCGA-CG-5719 TCGA-CG-5727 TCGA-D7-6815 
        1.71         0.76         0.82         1.02        31.04         3.65 

$`KRAS WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         0.62         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5799 TCGA-CD-5800 
        0.66         1.12         0.66         0.26         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  KRAS MUTATED KRAS WILD-TYPE 
          0.76           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
         31.04          70.06 
  KRAS MUTATED KRAS WILD-TYPE 
         1.365          4.140 
[1] "0.8 - 31.0 (1.4)" "0.1 - 70.1 (4.1)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
[1] "hr="     "7.3e+07"
D2V2, continuous
D2V3, binary
                cls
clus              0  1
  KRAS MUTATED    8  6
  KRAS WILD-TYPE 38 64
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      8    6
  KRAS WILD-TYPE   38   64
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE            8             38
  MALE              6             64
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  KRAS MUTATED                                       0
  KRAS WILD-TYPE                                    13
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  KRAS MUTATED                                                        9
  KRAS WILD-TYPE                                                     48
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  KRAS MUTATED                                                   1
  KRAS WILD-TYPE                                                 4
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  KRAS MUTATED                                                    0
  KRAS WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  KRAS MUTATED                                                  1
  KRAS WILD-TYPE                                                9
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  KRAS MUTATED                                                                        3
  KRAS WILD-TYPE                                                                     21
D2V4, multiclass
                vv
clus             T1 T2 T3 T4
  KRAS MUTATED    0  5  5  3
  KRAS WILD-TYPE  4 41 36 12
D2V5, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            0              4
  T2            5             41
  T3            5             36
  T4            3             12
                vv
clus             N0 N1 N2 N3
  KRAS MUTATED    6  3  3  0
  KRAS WILD-TYPE 29 36 16 12
D2V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0            6             29
  N1            3             36
  N2            3             16
  N3            0             12
                vv
clus             M0 M1 MX
  KRAS MUTATED   12  1  1
  KRAS WILD-TYPE 87 12  3
D2V7, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           12             87
  M1            1             12
  MX            1              3
                vv
clus              I II III IV
  KRAS MUTATED    2  2   6  2
  KRAS WILD-TYPE 16 30  23 19
D2V8, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I              2             16
  II             2             30
  III            6             23
  IV             2             19
                vv
clus             R0 R1 R2 RX
  KRAS MUTATED    6  0  0  7
  KRAS WILD-TYPE 61  5 12 18
D2V9, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  R0            6             61
  R1            0              5
  R2            0             12
  RX            7             18
D2V10, continuous

Clustering(3) Variable = PGM5 MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  PGM5 MUTATED    6  3
  PGM5 WILD-TYPE 65 11
  PGM5 MUTATED PGM5 WILD-TYPE 
             9             76 
  PGM5 MUTATED PGM5 WILD-TYPE 
             3             11 
$`PGM5 MUTATED`
TCGA-BR-6452 TCGA-CG-4305 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-5726 TCGA-CG-5728 
        0.95        15.95        21.99         1.02        28.96        65.10 
TCGA-CG-5733 TCGA-D7-6521 TCGA-F1-6177 
       21.07         8.19         6.54 

$`PGM5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       12.03         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 
        5.98         0.95        70.06        12.03        15.02        31.04 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        4.01        55.04         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80        15.65         9.63         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  PGM5 MUTATED PGM5 WILD-TYPE 
          0.95           0.07 
  PGM5 MUTATED PGM5 WILD-TYPE 
         65.10          70.06 
  PGM5 MUTATED PGM5 WILD-TYPE 
        15.950          3.615 
[1] "0.9 - 65.1 (15.9)" "0.1 - 70.1 (3.6)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
[1] "hr=" "1"  
D3V2, continuous
D3V3, binary
                cls
clus              0  1
  PGM5 MUTATED   11  5
  PGM5 WILD-TYPE 35 65
[1] "tbl2"
                cls
clus             [,1] [,2]
  PGM5 MUTATED     11    5
  PGM5 WILD-TYPE   35   65
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  FEMALE           11             35
  MALE              5             65
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  PGM5 MUTATED                                       1
  PGM5 WILD-TYPE                                    12
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  PGM5 MUTATED                                                        9
  PGM5 WILD-TYPE                                                     48
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  PGM5 MUTATED                                                   0
  PGM5 WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  PGM5 MUTATED                                                    0
  PGM5 WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  PGM5 MUTATED                                                  0
  PGM5 WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  PGM5 MUTATED                                                                        5
  PGM5 WILD-TYPE                                                                     19
D3V4, multiclass
                vv
clus             T1 T2 T3 T4
  PGM5 MUTATED    3  6  2  3
  PGM5 WILD-TYPE  1 40 39 12
D3V5, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  T1            3              1
  T2            6             40
  T3            2             39
  T4            3             12
                vv
clus             N0 N1 N2 N3
  PGM5 MUTATED    5  4  3  1
  PGM5 WILD-TYPE 30 35 16 11
D3V6, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  N0            5             30
  N1            4             35
  N2            3             16
  N3            1             11
                vv
clus             M0 M1 MX
  PGM5 MUTATED   13  2  1
  PGM5 WILD-TYPE 86 11  3
D3V7, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  M0           13             86
  M1            2             11
  MX            1              3
                vv
clus              I II III IV
  PGM5 MUTATED    4  2   3  3
  PGM5 WILD-TYPE 14 30  26 18
D3V8, multiclass
     clus
vv    PGM5 MUTATED PGM5 WILD-TYPE
  I              4             14
  II             2             30
  III            3             26
  IV             3             18
                vv
clus             R0 R1 R2 RX
  PGM5 MUTATED    8  0  2  6
  PGM5 WILD-TYPE 59  5 10 19
D3V9, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  R0            8             59
  R1            0              5
  R2            2             10
  RX            6             19
D3V10, continuous

Clustering(4) Variable = RPL22 MUTATION ANALYSIS
D4V1, survival
                 sevent
clus2              0  1
  RPL22 MUTATED    1  2
  RPL22 WILD-TYPE 70 12
  RPL22 MUTATED RPL22 WILD-TYPE 
              3              82 
  RPL22 MUTATED RPL22 WILD-TYPE 
              2              12 
$`RPL22 MUTATED`
TCGA-CG-4460 TCGA-CG-5726 TCGA-F1-6177 
       21.99        28.96         6.54 

$`RPL22 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  RPL22 MUTATED RPL22 WILD-TYPE 
           6.54            0.07 
  RPL22 MUTATED RPL22 WILD-TYPE 
          28.96           70.06 
  RPL22 MUTATED RPL22 WILD-TYPE 
          21.99            3.83 
[1] "6.5 - 29.0 (22.0)" "0.1 - 70.1 (3.8)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
[1] "hr=" "1.7"
D4V2, continuous
D4V3, binary
                 cls
clus               0  1
  RPL22 MUTATED    5  4
  RPL22 WILD-TYPE 41 66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPL22 MUTATED      5    4
  RPL22 WILD-TYPE   41   66
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  FEMALE             5              41
  MALE               4              66
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  RPL22 MUTATED                                       0
  RPL22 WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  RPL22 MUTATED                                                        6
  RPL22 WILD-TYPE                                                     51
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  RPL22 MUTATED                                                   0
  RPL22 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  RPL22 MUTATED                                                    0
  RPL22 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  RPL22 MUTATED                                                  0
  RPL22 WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  RPL22 MUTATED                                                                        3
  RPL22 WILD-TYPE                                                                     21
D4V4, multiclass
                 vv
clus              T1 T2 T3 T4
  RPL22 MUTATED    2  2  2  1
  RPL22 WILD-TYPE  2 44 39 14
D4V5, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  T1             2               2
  T2             2              44
  T3             2              39
  T4             1              14
                 vv
clus              N0 N1 N2 N3
  RPL22 MUTATED    2  5  0  0
  RPL22 WILD-TYPE 33 34 19 12
D4V6, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  N0             2              33
  N1             5              34
  N2             0              19
  N3             0              12
                 vv
clus              M0 M1 MX
  RPL22 MUTATED    5  1  3
  RPL22 WILD-TYPE 94 12  1
D4V7, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  M0             5              94
  M1             1              12
  MX             3               1
                 vv
clus               I II III IV
  RPL22 MUTATED    3  0   2  1
  RPL22 WILD-TYPE 15 32  27 20
D4V8, multiclass
     clus
vv    RPL22 MUTATED RPL22 WILD-TYPE
  I               3              15
  II              0              32
  III             2              27
  IV              1              20
                 vv
clus              R0 R1 R2 RX
  RPL22 MUTATED    3  0  1  5
  RPL22 WILD-TYPE 64  5 11 20
D4V9, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  R0             3              64
  R1             0               5
  R2             1              11
  RX             5              20
D4V10, continuous

Clustering(5) Variable = TP53 MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   36  5
  TP53 WILD-TYPE 35  9
  TP53 MUTATED TP53 WILD-TYPE 
            41             44 
  TP53 MUTATED TP53 WILD-TYPE 
             5              9 
$`TP53 MUTATED`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6803 TCGA-BR-6852 
        0.10         1.35         1.35         0.62         0.66         0.26 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4438 
        0.69         0.36         0.39        20.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 
        4.01        47.05        19.07        21.99        18.94         7.07 
TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5726 
       12.00         6.94         1.02         5.98        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 
       31.04         4.01        55.04         3.58         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        8.19         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6874 
        4.70         4.04         2.93         4.27         2.01 

$`TP53 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 
        5.62         0.95         1.41         0.82         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        2.17         0.99         1.22         0.66         1.12         0.76 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        0.82         0.49         0.30         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 
       15.95         1.02         8.05        14.01        29.98        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5719 
        1.02         8.98         1.02         1.02         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5728 TCGA-CG-5733 
        0.99         0.95        12.03        15.02        65.10        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 
        7.99         8.65         4.54        15.65         6.90         0.69 
TCGA-EQ-5647 TCGA-F1-6177 
        0.62         6.54 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         70.06          65.10 
  TP53 MUTATED TP53 WILD-TYPE 
         4.700          1.315 
[1] "0.1 - 70.1 (4.7)" "0.1 - 65.1 (1.3)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
[1] "hr=" "2.6"
D5V2, continuous
D5V3, binary
                cls
clus              0  1
  TP53 MUTATED   18 34
  TP53 WILD-TYPE 28 36
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     18   34
  TP53 WILD-TYPE   28   36
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           18             28
  MALE             34             36
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  TP53 MUTATED                                       6
  TP53 WILD-TYPE                                     7
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                       18
  TP53 WILD-TYPE                                                     39
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  TP53 MUTATED                                                   2
  TP53 WILD-TYPE                                                 3
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  TP53 MUTATED                                                    2
  TP53 WILD-TYPE                                                  0
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  TP53 MUTATED                                                  8
  TP53 WILD-TYPE                                                2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                                       14
  TP53 WILD-TYPE                                                                     10
D5V4, multiclass
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED    2 23 19  5
  TP53 WILD-TYPE  2 23 22 10
D5V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            2              2
  T2           23             23
  T3           19             22
  T4            5             10
                vv
clus             N0 N1 N2 N3
  TP53 MUTATED   15 18  9  6
  TP53 WILD-TYPE 20 21 10  6
D5V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           15             20
  N1           18             21
  N2            9             10
  N3            6              6
                vv
clus             M0 M1 MX
  TP53 MUTATED   46  3  3
  TP53 WILD-TYPE 53 10  1
D5V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           46             53
  M1            3             10
  MX            3              1
                vv
clus              I II III IV
  TP53 MUTATED    7 17  12 10
  TP53 WILD-TYPE 11 15  17 11
D5V8, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I              7             11
  II            17             15
  III           12             17
  IV            10             11
                vv
clus             R0 R1 R2 RX
  TP53 MUTATED   34  2  3 10
  TP53 WILD-TYPE 33  3  9 15
D5V9, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           34             33
  R1            2              3
  R2            3              9
  RX           10             15
D5V10, continuous

Clustering(6) Variable = TRIM48 MUTATION ANALYSIS
D6V1, survival
                  sevent
clus2               0  1
  TRIM48 MUTATED    1  3
  TRIM48 WILD-TYPE 70 11
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               4               81 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               3               11 
$`TRIM48 MUTATED`
TCGA-CG-4306 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5733 
        1.02        70.06        28.96        21.07 

$`TRIM48 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.39        20.02         3.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       15.02        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  TRIM48 MUTATED TRIM48 WILD-TYPE 
            1.02             0.07 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           70.06            65.10 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
          25.015            4.010 
[1] "1.0 - 70.1 (25.0)" "0.1 - 65.1 (4.0)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
[1] "hr=" "1.9"
D6V2, continuous
D6V3, binary
                  cls
clus                0  1
  TRIM48 MUTATED    6  4
  TRIM48 WILD-TYPE 40 66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      6    4
  TRIM48 WILD-TYPE   40   66
        clus
vv       TRIM48 MUTATED TRIM48 WILD-TYPE
  FEMALE              6               40
  MALE                4               66
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  TRIM48 MUTATED                                       0
  TRIM48 WILD-TYPE                                    13
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  TRIM48 MUTATED                                                        8
  TRIM48 WILD-TYPE                                                     49
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  TRIM48 MUTATED                                                   0
  TRIM48 WILD-TYPE                                                 5
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  TRIM48 MUTATED                                                    0
  TRIM48 WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  TRIM48 MUTATED                                                  0
  TRIM48 WILD-TYPE                                               10
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  TRIM48 MUTATED                                                                        2
  TRIM48 WILD-TYPE                                                                     22
D6V4, multiclass
                  vv
clus               T1 T2 T3 T4
  TRIM48 MUTATED    2  3  4  1
  TRIM48 WILD-TYPE  2 43 37 14
D6V5, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  T1              2                2
  T2              3               43
  T3              4               37
  T4              1               14
                  vv
clus               N0 N1 N2 N3
  TRIM48 MUTATED    2  4  2  0
  TRIM48 WILD-TYPE 33 35 17 12
D6V6, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  N0              2               33
  N1              4               35
  N2              2               17
  N3              0               12
                  vv
clus               M0 M1 MX
  TRIM48 MUTATED    7  1  2
  TRIM48 WILD-TYPE 92 12  2
D6V7, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  M0              7               92
  M1              1               12
  MX              2                2
                  vv
clus                I II III IV
  TRIM48 MUTATED    1  1   5  1
  TRIM48 WILD-TYPE 17 31  24 20
D6V8, multiclass
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  I                1               17
  II               1               31
  III              5               24
  IV               1               20
                  vv
clus               R0 R1 R2 RX
  TRIM48 MUTATED    3  0  1  6
  TRIM48 WILD-TYPE 64  5 11 19
D6V9, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  R0              3               64
  R1              0                5
  R2              1               11
  RX              6               19
D6V10, continuous

Clustering(7) Variable = XPOT MUTATION ANALYSIS
D7V1, survival
                sevent
clus2             0  1
  XPOT MUTATED    1  1
  XPOT WILD-TYPE 70 13
  XPOT MUTATED XPOT WILD-TYPE 
             2             83 
  XPOT MUTATED XPOT WILD-TYPE 
             1             13 
$`XPOT MUTATED`
TCGA-BR-6802 TCGA-CG-4465 
        0.76         8.98 

$`XPOT WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        1.22         0.66         1.12         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03        21.99         1.02        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  XPOT MUTATED XPOT WILD-TYPE 
          0.76           0.07 
  XPOT MUTATED XPOT WILD-TYPE 
          8.98          70.06 
  XPOT MUTATED XPOT WILD-TYPE 
          4.87           4.01 
[1] "0.8 - 9.0 (4.9)"  "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE"   "XPOT MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"XPOT WILD-TYPE"   "XPOT MUTATED" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-F1-6874 
"XPOT WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE"   "XPOT MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"XPOT WILD-TYPE"   "XPOT MUTATED" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-F1-6874 
"XPOT WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE"   "XPOT MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"XPOT WILD-TYPE"   "XPOT MUTATED" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-F1-6874 
"XPOT WILD-TYPE" 
[1] "Remove cluster labels:" "XPOT MUTATED"          
clus
  XPOT MUTATED XPOT WILD-TYPE 
             2             83 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6803 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4462 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4472     TCGA-CG-4474 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
D7V2, continuous
D7V3, binary
                cls
clus              0  1
  XPOT MUTATED    3  3
  XPOT WILD-TYPE 43 67
[1] "tbl2"
                cls
clus             [,1] [,2]
  XPOT MUTATED      3    3
  XPOT WILD-TYPE   43   67
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  FEMALE            3             43
  MALE              3             67
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  XPOT MUTATED                                       0
  XPOT WILD-TYPE                                    13
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  XPOT MUTATED                                                        4
  XPOT WILD-TYPE                                                     53
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  XPOT MUTATED                                                   0
  XPOT WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  XPOT MUTATED                                                    0
  XPOT WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  XPOT MUTATED                                                  0
  XPOT WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  XPOT MUTATED                                                                        1
  XPOT WILD-TYPE                                                                     23
D7V4, multiclass
                vv
clus             T1 T2 T3 T4
  XPOT MUTATED    0  2  2  1
  XPOT WILD-TYPE  4 44 39 14
D7V5, multiclass
    clus
vv   XPOT MUTATED XPOT WILD-TYPE
  T1            0              4
  T2            2             44
  T3            2             39
  T4            1             14
                vv
clus             N0 N1 N2 N3
  XPOT MUTATED    1  2  0  1
  XPOT WILD-TYPE 34 37 19 11
D7V6, multiclass
    clus
vv   XPOT MUTATED XPOT WILD-TYPE
  N0            1             34
  N1            2             37
  N2            0             19
  N3            1             11
                vv
clus             M0 M1 MX
  XPOT MUTATED    4  1  1
  XPOT WILD-TYPE 95 12  3
D7V7, multiclass
    clus
vv   XPOT MUTATED XPOT WILD-TYPE
  M0            4             95
  M1            1             12
  MX            1              3
                vv
clus              I II III IV
  XPOT MUTATED    1  0   2  1
  XPOT WILD-TYPE 17 32  27 20
D7V8, multiclass
     clus
vv    XPOT MUTATED XPOT WILD-TYPE
  I              1             17
  II             0             32
  III            2             27
  IV             1             20
                vv
clus             R0 R1 R2 RX
  XPOT MUTATED    2  0  1  3
  XPOT WILD-TYPE 65  5 11 22
D7V9, multiclass
    clus
vv   XPOT MUTATED XPOT WILD-TYPE
  R0            2             65
  R1            0              5
  R2            1             11
  RX            3             22
D7V10, continuous
[1] "Remove cluster labels:" "XPOT MUTATED"          
clus
  XPOT MUTATED XPOT WILD-TYPE 
             2             69 
    TCGA-B7-5816     TCGA-BR-4183     TCGA-BR-4188     TCGA-BR-4191 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4267 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4361     TCGA-BR-4362 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-4367     TCGA-BR-4368     TCGA-BR-6452     TCGA-BR-6453 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6803     TCGA-BR-6852 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" "XPOT WILD-TYPE" 
    TCGA-F1-6874 
"XPOT WILD-TYPE" 

Clustering(8) Variable = PIK3CA MUTATION ANALYSIS
D8V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   18  1
  PIK3CA WILD-TYPE 53 13
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              19               66 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               1               13 
$`PIK3CA MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6706 TCGA-BR-6707 
        5.62         0.10         0.95         1.41         2.17         0.99 
TCGA-BR-6802 TCGA-BR-6852 TCGA-CD-5801 TCGA-CG-4305 TCGA-CG-4474 TCGA-CG-5721 
        0.76         0.26         0.49        15.95         1.02         5.98 
TCGA-CG-5722 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6815 
        0.95        65.10        21.07         8.65         3.58         3.65 
TCGA-F1-6177 
        6.54 

$`PIK3CA WILD-TYPE`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
        1.35         1.35         0.82         0.62         0.62         1.71 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        1.22         0.66         1.12         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.36         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       27.02         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5723 
        1.02         6.94         1.02         1.02         0.99        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        28.96        31.04         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        7.99         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.70         4.04         2.93         4.27         0.62         2.01 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.10             0.07 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           65.10            70.06 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           2.170            4.205 
[1] "0.1 - 65.1 (2.2)" "0.1 - 70.1 (4.2)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
[1] "hr=" "2.3"
D8V2, continuous
D8V3, binary
                  cls
clus                0  1
  PIK3CA MUTATED   12 12
  PIK3CA WILD-TYPE 34 58
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     12   12
  PIK3CA WILD-TYPE   34   58
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             12               34
  MALE               12               58
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  PIK3CA MUTATED                                       3
  PIK3CA WILD-TYPE                                    10
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  PIK3CA MUTATED                                                       13
  PIK3CA WILD-TYPE                                                     44
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  PIK3CA MUTATED                                                   0
  PIK3CA WILD-TYPE                                                 5
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  PIK3CA MUTATED                                                    0
  PIK3CA WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  PIK3CA MUTATED                                                  3
  PIK3CA WILD-TYPE                                                7
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  PIK3CA MUTATED                                                                        5
  PIK3CA WILD-TYPE                                                                     19
D8V4, multiclass
                  vv
clus               T1 T2 T3 T4
  PIK3CA MUTATED    1  8 11  4
  PIK3CA WILD-TYPE  3 38 30 11
D8V5, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                3
  T2              8               38
  T3             11               30
  T4              4               11
                  vv
clus               N0 N1 N2 N3
  PIK3CA MUTATED    9  8  5  1
  PIK3CA WILD-TYPE 26 31 14 11
D8V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0              9               26
  N1              8               31
  N2              5               14
  N3              1               11
                  vv
clus               M0 M1 MX
  PIK3CA MUTATED   21  2  1
  PIK3CA WILD-TYPE 78 11  3
D8V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0             21               78
  M1              2               11
  MX              1                3
                  vv
clus                I II III IV
  PIK3CA MUTATED    4  6  10  3
  PIK3CA WILD-TYPE 14 26  19 18
D8V8, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  I                4               14
  II               6               26
  III             10               19
  IV               3               18
                  vv
clus               R0 R1 R2 RX
  PIK3CA MUTATED   18  0  2  3
  PIK3CA WILD-TYPE 49  5 10 22
D8V9, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  R0             18               49
  R1              0                5
  R2              2               10
  RX              3               22
D8V10, continuous

Clustering(9) Variable = ACVR2A MUTATION ANALYSIS
D9V1, survival
                  sevent
clus2               0  1
  ACVR2A MUTATED    3  4
  ACVR2A WILD-TYPE 68 10
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               7               78 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               4               10 
$`ACVR2A MUTATED`
TCGA-BR-6566 TCGA-BR-6852 TCGA-CG-4306 TCGA-CG-4465 TCGA-CG-5720 TCGA-CG-5726 
        0.62         0.26         1.02         8.98         0.99        28.96 
TCGA-F1-6874 
        2.01 

$`ACVR2A WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         1.02         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        12.03        15.02        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 

  ACVR2A MUTATED ACVR2A WILD-TYPE 
            0.26             0.07 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           28.96            70.06 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
            1.02             4.09 
[1] "0.3 - 29.0 (1.0)" "0.1 - 70.1 (4.1)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
[1] "hr=" "5.4"
D9V2, continuous
D9V3, binary
                  cls
clus                0  1
  ACVR2A MUTATED    8  5
  ACVR2A WILD-TYPE 38 65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      8    5
  ACVR2A WILD-TYPE   38   65
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE              8               38
  MALE                5               65
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  ACVR2A MUTATED                                       0
  ACVR2A WILD-TYPE                                    13
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  ACVR2A MUTATED                                                       10
  ACVR2A WILD-TYPE                                                     47
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  ACVR2A MUTATED                                                   0
  ACVR2A WILD-TYPE                                                 5
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  ACVR2A MUTATED                                                    0
  ACVR2A WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  ACVR2A MUTATED                                                  0
  ACVR2A WILD-TYPE                                               10
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  ACVR2A MUTATED                                                                        2
  ACVR2A WILD-TYPE                                                                     22
D9V4, multiclass
                  vv
clus               T1 T2 T3 T4
  ACVR2A MUTATED    2  4  4  2
  ACVR2A WILD-TYPE  2 42 37 13
D9V5, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  T1              2                2
  T2              4               42
  T3              4               37
  T4              2               13
                  vv
clus               N0 N1 N2 N3
  ACVR2A MUTATED    5  3  2  1
  ACVR2A WILD-TYPE 30 36 17 11
D9V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  N0              5               30
  N1              3               36
  N2              2               17
  N3              1               11
                  vv
clus               M0 M1 MX
  ACVR2A MUTATED   10  2  1
  ACVR2A WILD-TYPE 89 11  3
D9V7, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  M0             10               89
  M1              2               11
  MX              1                3
                  vv
clus                I II III IV
  ACVR2A MUTATED    3  3   1  3
  ACVR2A WILD-TYPE 15 29  28 18
D9V8, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  I                3               15
  II               3               29
  III              1               28
  IV               3               18
                  vv
clus               R0 R1 R2 RX
  ACVR2A MUTATED    6  0  2  5
  ACVR2A WILD-TYPE 61  5 10 20
D9V9, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  R0              6               61
  R1              0                5
  R2              2               10
  RX              5               20
D9V10, continuous

Clustering(10) Variable = RHOA MUTATION ANALYSIS
D10V1, survival
                sevent
clus2             0  1
  RHOA MUTATED    4  2
  RHOA WILD-TYPE 67 12
  RHOA MUTATED RHOA WILD-TYPE 
             6             79 
  RHOA MUTATED RHOA WILD-TYPE 
             2             12 
$`RHOA MUTATED`
TCGA-BR-6802 TCGA-CG-4465 TCGA-CG-5720 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        0.76         8.98         0.99         9.63         8.19         6.90 

$`RHOA WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        1.22         0.66         1.12         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03        21.99         1.02        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  RHOA MUTATED RHOA WILD-TYPE 
          0.76           0.07 
  RHOA MUTATED RHOA WILD-TYPE 
          9.63          70.06 
  RHOA MUTATED RHOA WILD-TYPE 
         7.545          4.010 
[1] "0.8 - 9.6 (7.5)"  "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
[1] "hr=" "3.6"
D10V2, continuous
D10V3, binary
                cls
clus              0  1
  RHOA MUTATED    2  5
  RHOA WILD-TYPE 44 65
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      2    5
  RHOA WILD-TYPE   44   65
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            2             44
  MALE              5             65
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  RHOA MUTATED                                       2
  RHOA WILD-TYPE                                    11
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  RHOA MUTATED                                                        3
  RHOA WILD-TYPE                                                     54
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  RHOA MUTATED                                                   0
  RHOA WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  RHOA MUTATED                                                    0
  RHOA WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  RHOA MUTATED                                                  1
  RHOA WILD-TYPE                                                9
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  RHOA MUTATED                                                                        0
  RHOA WILD-TYPE                                                                     24
D10V4, multiclass
                vv
clus             T1 T2 T3 T4
  RHOA MUTATED    0  4  1  1
  RHOA WILD-TYPE  4 42 40 14
D10V5, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            0              4
  T2            4             42
  T3            1             40
  T4            1             14
                vv
clus             N0 N1 N2 N3
  RHOA MUTATED    2  2  2  1
  RHOA WILD-TYPE 33 37 17 11
D10V6, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            2             33
  N1            2             37
  N2            2             17
  N3            1             11
                vv
clus             M0 M1 MX
  RHOA MUTATED    6  1  0
  RHOA WILD-TYPE 93 12  4
D10V7, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  M0            6             93
  M1            1             12
  MX            0              4
                vv
clus              I II III IV
  RHOA MUTATED    2  0   3  1
  RHOA WILD-TYPE 16 32  26 20
D10V8, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  I              2             16
  II             0             32
  III            3             26
  IV             1             20
                vv
clus             R0 R1 R2 RX
  RHOA MUTATED    5  0  1  1
  RHOA WILD-TYPE 62  5 11 24
D10V9, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  R0            5             62
  R1            0              5
  R2            1             11
  RX            1             24
D10V10, continuous

Clustering(11) Variable = ARID1A MUTATION ANALYSIS
D11V1, survival
                  sevent
clus2               0  1
  ARID1A MUTATED   10  2
  ARID1A WILD-TYPE 61 12
  ARID1A MUTATED ARID1A WILD-TYPE 
              12               73 
  ARID1A MUTATED ARID1A WILD-TYPE 
               2               12 
$`ARID1A MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6707 TCGA-BR-6802 TCGA-CD-5803 
        5.62         0.95         1.41         0.99         0.76         0.07 
TCGA-CG-4465 TCGA-CG-4469 TCGA-D7-5577 TCGA-D7-6521 TCGA-D7-6524 TCGA-F1-6177 
        8.98         7.07         8.65         8.19         0.69         6.54 

$`ARID1A WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 
        0.10         1.35         1.35         0.82         0.62         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 
        1.71         2.17         1.22         0.66         1.12         0.66 
TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        0.26         0.82         0.69         0.36         0.49         0.30 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 
       47.05        19.07        12.03        21.99         1.02        18.94 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       21.07         7.99         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        9.63         6.90         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6874 
        2.01 

  ARID1A MUTATED ARID1A WILD-TYPE 
            0.07             0.10 
  ARID1A MUTATED ARID1A WILD-TYPE 
            8.98            70.06 
  ARID1A MUTATED ARID1A WILD-TYPE 
           3.515            4.010 
[1] "0.1 - 9.0 (3.5)"  "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
[1] "hr=" "2.6"
D11V2, continuous
D11V3, binary
                  cls
clus                0  1
  ARID1A MUTATED   13  9
  ARID1A WILD-TYPE 33 61
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     13    9
  ARID1A WILD-TYPE   33   61
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE             13               33
  MALE                9               61
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  ARID1A MUTATED                                       3
  ARID1A WILD-TYPE                                    10
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  ARID1A MUTATED                                                       15
  ARID1A WILD-TYPE                                                     42
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  ARID1A MUTATED                                                   0
  ARID1A WILD-TYPE                                                 5
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  ARID1A MUTATED                                                    0
  ARID1A WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  ARID1A MUTATED                                                  1
  ARID1A WILD-TYPE                                                9
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  ARID1A MUTATED                                                                        2
  ARID1A WILD-TYPE                                                                     22
D11V4, multiclass
                  vv
clus               T1 T2 T3 T4
  ARID1A MUTATED    2  5 10  3
  ARID1A WILD-TYPE  2 41 31 12
D11V5, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              2                2
  T2              5               41
  T3             10               31
  T4              3               12
                  vv
clus               N0 N1 N2 N3
  ARID1A MUTATED    6  8  1  3
  ARID1A WILD-TYPE 29 31 18  9
D11V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0              6               29
  N1              8               31
  N2              1               18
  N3              3                9
                  vv
clus               M0 M1 MX
  ARID1A MUTATED   18  1  3
  ARID1A WILD-TYPE 81 12  1
D11V7, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  M0             18               81
  M1              1               12
  MX              3                1
                  vv
clus                I II III IV
  ARID1A MUTATED    2  4   9  2
  ARID1A WILD-TYPE 16 28  20 19
D11V8, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  I                2               16
  II               4               28
  III              9               20
  IV               2               19
                  vv
clus               R0 R1 R2 RX
  ARID1A MUTATED    9  2  1  9
  ARID1A WILD-TYPE 58  3 11 16
D11V9, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  R0              9               58
  R1              2                3
  R2              1               11
  RX              9               16
D11V10, continuous

Clustering(12) Variable = OR8H3 MUTATION ANALYSIS
D12V1, survival
                 sevent
clus2              0  1
  OR8H3 MUTATED    8  2
  OR8H3 WILD-TYPE 63 12
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10              75 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              2              12 
$`OR8H3 MUTATED`
TCGA-B7-5818 TCGA-BR-6452 TCGA-CG-4436 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-5721 
        0.10         0.95        52.96        47.05         7.07         5.98 
TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5578 TCGA-D7-6525 
       65.10        21.07         3.58         5.95 

$`OR8H3 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        5.62         1.41         1.35         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95         1.02         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        14.01        29.98        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98        18.94        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
       70.06        12.03        15.02        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       55.04         7.99         8.65         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 
        9.63         8.19         6.90         0.69         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  OR8H3 MUTATED OR8H3 WILD-TYPE 
           0.10            0.07 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          65.10           70.06 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          6.525           3.650 
[1] "0.1 - 65.1 (6.5)" "0.1 - 70.1 (3.6)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
[1] "hr=" "1.5"
D12V2, continuous
D12V3, binary
                 cls
clus               0  1
  OR8H3 MUTATED    3  7
  OR8H3 WILD-TYPE 43 63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      3    7
  OR8H3 WILD-TYPE   43   63
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  FEMALE             3              43
  MALE               7              63
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  OR8H3 MUTATED                                       2
  OR8H3 WILD-TYPE                                    11
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  OR8H3 MUTATED                                                        1
  OR8H3 WILD-TYPE                                                     56
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  OR8H3 MUTATED                                                   0
  OR8H3 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  OR8H3 MUTATED                                                    0
  OR8H3 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  OR8H3 MUTATED                                                  1
  OR8H3 WILD-TYPE                                                9
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  OR8H3 MUTATED                                                                        5
  OR8H3 WILD-TYPE                                                                     19
D12V4, multiclass
                 vv
clus              T1 T2 T3 T4
  OR8H3 MUTATED    0  6  3  1
  OR8H3 WILD-TYPE  4 40 38 14
D12V5, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  T1             0               4
  T2             6              40
  T3             3              38
  T4             1              14
                 vv
clus              N0 N1 N2 N3
  OR8H3 MUTATED    4  1  4  1
  OR8H3 WILD-TYPE 31 38 15 11
D12V6, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  N0             4              31
  N1             1              38
  N2             4              15
  N3             1              11
                 vv
clus              M0 M1 MX
  OR8H3 MUTATED   10  0  0
  OR8H3 WILD-TYPE 89 13  4
D12V7, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  M0            10              89
  M1             0              13
  MX             0               4
                 vv
clus               I II III IV
  OR8H3 MUTATED    3  2   3  2
  OR8H3 WILD-TYPE 15 30  26 19
D12V8, multiclass
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  I               3              15
  II              2              30
  III             3              26
  IV              2              19
                 vv
clus              R0 R1 R2 RX
  OR8H3 MUTATED    9  1  0  0
  OR8H3 WILD-TYPE 58  4 12 25
D12V9, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  R0             9              58
  R1             1               4
  R2             0              12
  RX             0              25
D12V10, continuous

Clustering(13) Variable = EDNRB MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  EDNRB MUTATED    6  1
  EDNRB WILD-TYPE 65 13
  EDNRB MUTATED EDNRB WILD-TYPE 
              7              78 
  EDNRB MUTATED EDNRB WILD-TYPE 
              1              13 
$`EDNRB MUTATED`
TCGA-BR-6452 TCGA-CD-5800 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5721 
        0.95         0.36        12.03        18.94        12.00         5.98 
TCGA-CG-5724 
       12.03 

$`EDNRB WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.69         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  EDNRB MUTATED EDNRB WILD-TYPE 
           0.36            0.07 
  EDNRB MUTATED EDNRB WILD-TYPE 
          18.94           70.06 
  EDNRB MUTATED EDNRB WILD-TYPE 
          12.00            3.83 
[1] "0.4 - 18.9 (12.0)" "0.1 - 70.1 (3.8)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
                 cls
clus               0  1
  EDNRB MUTATED    6  6
  EDNRB WILD-TYPE 40 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      6    6
  EDNRB WILD-TYPE   40   64
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  FEMALE             6              40
  MALE               6              64
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  EDNRB MUTATED                                       1
  EDNRB WILD-TYPE                                    12
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  EDNRB MUTATED                                                        6
  EDNRB WILD-TYPE                                                     51
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  EDNRB MUTATED                                                   1
  EDNRB WILD-TYPE                                                 4
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  EDNRB MUTATED                                                    1
  EDNRB WILD-TYPE                                                  1
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  EDNRB MUTATED                                                  0
  EDNRB WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  EDNRB MUTATED                                                                        2
  EDNRB WILD-TYPE                                                                     22
D13V4, multiclass
                 vv
clus              T1 T2 T3 T4
  EDNRB MUTATED    1  3  4  3
  EDNRB WILD-TYPE  3 43 37 12
D13V5, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  T1             1               3
  T2             3              43
  T3             4              37
  T4             3              12
                 vv
clus              N0 N1 N2 N3
  EDNRB MUTATED    4  6  0  1
  EDNRB WILD-TYPE 31 33 19 11
D13V6, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  N0             4              31
  N1             6              33
  N2             0              19
  N3             1              11
                 vv
clus              M0 M1 MX
  EDNRB MUTATED   10  1  1
  EDNRB WILD-TYPE 89 12  3
D13V7, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  M0            10              89
  M1             1              12
  MX             1               3
                 vv
clus               I II III IV
  EDNRB MUTATED    1  3   3  3
  EDNRB WILD-TYPE 17 29  26 18
D13V8, multiclass
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  I               1              17
  II              3              29
  III             3              26
  IV              3              18
                 vv
clus              R0 R1 R2 RX
  EDNRB MUTATED    5  0  1  5
  EDNRB WILD-TYPE 62  5 11 20
D13V9, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  R0             5              62
  R1             0               5
  R2             1              11
  RX             5              20
D13V10, continuous

Clustering(14) Variable = ZNF804B MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                0  1
  ZNF804B MUTATED   10  3
  ZNF804B WILD-TYPE 61 11
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               13                72 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
                3                11 
$`ZNF804B MUTATED`
TCGA-BR-6452 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
        0.95         3.02        15.95        52.96         8.05         4.01 
TCGA-CG-4469 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5728 TCGA-D7-6527 
        7.07         5.98        70.06        12.03        65.10         4.14 
TCGA-D7-6822 
        4.27 

$`ZNF804B WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 
       20.02        27.02         1.02        54.05        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5725 TCGA-CG-5726 
        1.02         1.02         0.99         0.95        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 
        6.90         0.69         5.95         6.61         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.70         4.04         2.93         0.62         6.54         2.01 

  ZNF804B MUTATED ZNF804B WILD-TYPE 
             0.95              0.07 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
            70.06             55.04 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
             7.07              2.55 
[1] "0.9 - 70.1 (7.1)" "0.1 - 55.0 (2.5)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
D14V3, binary
                   cls
clus                 0  1
  ZNF804B MUTATED    6 12
  ZNF804B WILD-TYPE 40 58
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      6   12
  ZNF804B WILD-TYPE   40   58
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  FEMALE               6                40
  MALE                12                58
                   vv
clus                STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  ZNF804B MUTATED                                       1
  ZNF804B WILD-TYPE                                    12
                   vv
clus                STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  ZNF804B MUTATED                                                        9
  ZNF804B WILD-TYPE                                                     48
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  ZNF804B MUTATED                                                   0
  ZNF804B WILD-TYPE                                                 5
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  ZNF804B MUTATED                                                    1
  ZNF804B WILD-TYPE                                                  1
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  ZNF804B MUTATED                                                  1
  ZNF804B WILD-TYPE                                                9
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  ZNF804B MUTATED                                                                        6
  ZNF804B WILD-TYPE                                                                     18
D14V4, multiclass
                   vv
clus                T1 T2 T3 T4
  ZNF804B MUTATED    0  7  6  2
  ZNF804B WILD-TYPE  4 39 35 13
D14V5, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  T1               0                 4
  T2               7                39
  T3               6                35
  T4               2                13
                   vv
clus                N0 N1 N2 N3
  ZNF804B MUTATED    5  7  0  3
  ZNF804B WILD-TYPE 30 32 19  9
D14V6, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  N0               5                30
  N1               7                32
  N2               0                19
  N3               3                 9
                   vv
clus                M0 M1 MX
  ZNF804B MUTATED   14  3  1
  ZNF804B WILD-TYPE 85 10  3
D14V7, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  M0              14                85
  M1               3                10
  MX               1                 3
                   vv
clus                 I II III IV
  ZNF804B MUTATED    3  6   0  5
  ZNF804B WILD-TYPE 15 26  29 16
D14V8, multiclass
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  I                 3                15
  II                6                26
  III               0                29
  IV                5                16
                   vv
clus                R0 R1 R2 RX
  ZNF804B MUTATED   10  1  3  4
  ZNF804B WILD-TYPE 57  4  9 21
D14V9, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  R0              10                57
  R1               1                 4
  R2               3                 9
  RX               4                21
D14V10, continuous

Clustering(15) Variable = IRF2 MUTATION ANALYSIS
D15V1, survival
                sevent
clus2             0  1
  IRF2 MUTATED    2  1
  IRF2 WILD-TYPE 69 13
  IRF2 MUTATED IRF2 WILD-TYPE 
             3             82 
  IRF2 MUTATED IRF2 WILD-TYPE 
             1             13 
$`IRF2 MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-CG-5726 
        5.62         0.95        28.96 

$`IRF2 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        0.10         1.41         1.35         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  IRF2 MUTATED IRF2 WILD-TYPE 
          0.95           0.07 
  IRF2 MUTATED IRF2 WILD-TYPE 
         28.96          70.06 
  IRF2 MUTATED IRF2 WILD-TYPE 
          5.62           4.01 
[1] "0.9 - 29.0 (5.6)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
[1] "hr=" "1.4"
D15V2, continuous
D15V3, binary
                cls
clus              0  1
  IRF2 MUTATED    6  2
  IRF2 WILD-TYPE 40 68
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRF2 MUTATED      6    2
  IRF2 WILD-TYPE   40   68
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  FEMALE            6             40
  MALE              2             68
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  IRF2 MUTATED                                       1
  IRF2 WILD-TYPE                                    12
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  IRF2 MUTATED                                                        6
  IRF2 WILD-TYPE                                                     51
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  IRF2 MUTATED                                                   0
  IRF2 WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  IRF2 MUTATED                                                    0
  IRF2 WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  IRF2 MUTATED                                                  0
  IRF2 WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  IRF2 MUTATED                                                                        1
  IRF2 WILD-TYPE                                                                     23
D15V4, multiclass
                vv
clus             T1 T2 T3 T4
  IRF2 MUTATED    1  0  2  2
  IRF2 WILD-TYPE  3 46 39 13
D15V5, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  T1            1              3
  T2            0             46
  T3            2             39
  T4            2             13
                vv
clus             N0 N1 N2 N3
  IRF2 MUTATED    3  2  1  0
  IRF2 WILD-TYPE 32 37 18 12
D15V6, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  N0            3             32
  N1            2             37
  N2            1             18
  N3            0             12
                vv
clus             M0 M1 MX
  IRF2 MUTATED    7  0  1
  IRF2 WILD-TYPE 92 13  3
D15V7, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  M0            7             92
  M1            0             13
  MX            1              3
                vv
clus              I II III IV
  IRF2 MUTATED    1  1   2  1
  IRF2 WILD-TYPE 17 31  27 20
D15V8, multiclass
     clus
vv    IRF2 MUTATED IRF2 WILD-TYPE
  I              1             17
  II             1             31
  III            2             27
  IV             1             20
                vv
clus             R0 R1 R2 RX
  IRF2 MUTATED    3  0  0  5
  IRF2 WILD-TYPE 64  5 12 20
D15V9, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  R0            3             64
  R1            0              5
  R2            0             12
  RX            5             20
D15V10, continuous

Clustering(16) Variable = IAPP MUTATION ANALYSIS
D16V1, survival
                sevent
clus2             0  1
  IAPP MUTATED    2  0
  IAPP WILD-TYPE 69 14
  IAPP MUTATED IAPP WILD-TYPE 
             2             83 
  IAPP MUTATED IAPP WILD-TYPE 
             0             14 
$`IAPP MUTATED`
TCGA-CG-4466 TCGA-D7-6522 
       18.94         6.90 

$`IAPP WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6525 
        9.80        15.65         9.63         8.19         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  IAPP MUTATED IAPP WILD-TYPE 
          6.90           0.07 
  IAPP MUTATED IAPP WILD-TYPE 
         18.94          70.06 
  IAPP MUTATED IAPP WILD-TYPE 
         12.92           4.01 
[1] "6.9 - 18.9 (12.9)" "0.1 - 70.1 (4.0)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
[1] "Remove cluster labels:" "IAPP MUTATED"          
clus
  IAPP MUTATED IAPP WILD-TYPE 
             2             83 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4469     TCGA-CG-4472 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6524     TCGA-D7-6525 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
D16V2, continuous
D16V3, binary
                cls
clus              0  1
  IAPP MUTATED    1  3
  IAPP WILD-TYPE 45 67
[1] "tbl2"
                cls
clus             [,1] [,2]
  IAPP MUTATED      1    3
  IAPP WILD-TYPE   45   67
        clus
vv       IAPP MUTATED IAPP WILD-TYPE
  FEMALE            1             45
  MALE              3             67
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  IAPP MUTATED                                       1
  IAPP WILD-TYPE                                    12
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  IAPP MUTATED                                                        2
  IAPP WILD-TYPE                                                     55
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  IAPP MUTATED                                                   0
  IAPP WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  IAPP MUTATED                                                    0
  IAPP WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  IAPP MUTATED                                                  0
  IAPP WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  IAPP MUTATED                                                                        1
  IAPP WILD-TYPE                                                                     23
D16V4, multiclass
                vv
clus             T1 T2 T3 T4
  IAPP MUTATED    0  2  1  0
  IAPP WILD-TYPE  4 44 40 15
D16V5, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  T1            0              4
  T2            2             44
  T3            1             40
  T4            0             15
                vv
clus             N0 N1 N2 N3
  IAPP MUTATED    2  2  0  0
  IAPP WILD-TYPE 33 37 19 12
D16V6, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  N0            2             33
  N1            2             37
  N2            0             19
  N3            0             12
                vv
clus             M0 M1 MX
  IAPP MUTATED    3  0  1
  IAPP WILD-TYPE 96 13  3
D16V7, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  M0            3             96
  M1            0             13
  MX            1              3
                vv
clus              I II III IV
  IAPP MUTATED    2  0   1  0
  IAPP WILD-TYPE 16 32  28 21
D16V8, multiclass
     clus
vv    IAPP MUTATED IAPP WILD-TYPE
  I              2             16
  II             0             32
  III            1             28
  IV             0             21
                vv
clus             R0 R1 R2 RX
  IAPP MUTATED    2  0  0  2
  IAPP WILD-TYPE 65  5 12 23
D16V9, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  R0            2             65
  R1            0              5
  R2            0             12
  RX            2             23
D16V10, continuous

Clustering(17) Variable = PCDH15 MUTATION ANALYSIS
D17V1, survival
                  sevent
clus2               0  1
  PCDH15 MUTATED   13  3
  PCDH15 WILD-TYPE 58 11
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              16               69 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               3               11 
$`PCDH15 MUTATED`
TCGA-B7-5818 TCGA-BR-6706 TCGA-BR-6802 TCGA-CD-5813 TCGA-CG-4436 TCGA-CG-4460 
        0.10         2.17         0.76         0.39        52.96        21.99 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5727 TCGA-D7-6524 
       18.94        12.00         1.02         0.99        31.04         0.69 
TCGA-D7-6526 TCGA-D7-6818 TCGA-EQ-5647 TCGA-F1-6874 
        6.61         4.04         0.62         2.01 

$`PCDH15 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         0.62         1.71         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
       29.98        47.05        19.07        12.03         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        6.90         5.95         4.14         1.68         3.65         4.70 
TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6177 
        2.93         4.27         6.54 

  PCDH15 MUTATED PCDH15 WILD-TYPE 
            0.10             0.07 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
           52.96            70.06 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
            2.09             4.14 
[1] "0.1 - 53.0 (2.1)" "0.1 - 70.1 (4.1)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
[1] "hr=" "1.1"
D17V2, continuous
D17V3, binary
                  cls
clus                0  1
  PCDH15 MUTATED   10 12
  PCDH15 WILD-TYPE 36 58
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     10   12
  PCDH15 WILD-TYPE   36   58
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  FEMALE             10               36
  MALE               12               58
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  PCDH15 MUTATED                                       3
  PCDH15 WILD-TYPE                                    10
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  PCDH15 MUTATED                                                       10
  PCDH15 WILD-TYPE                                                     47
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  PCDH15 MUTATED                                                   1
  PCDH15 WILD-TYPE                                                 4
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  PCDH15 MUTATED                                                    0
  PCDH15 WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  PCDH15 MUTATED                                                  1
  PCDH15 WILD-TYPE                                                9
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  PCDH15 MUTATED                                                                        6
  PCDH15 WILD-TYPE                                                                     18
D17V4, multiclass
                  vv
clus               T1 T2 T3 T4
  PCDH15 MUTATED    1  9  6  5
  PCDH15 WILD-TYPE  3 37 35 10
D17V5, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  T1              1                3
  T2              9               37
  T3              6               35
  T4              5               10
                  vv
clus               N0 N1 N2 N3
  PCDH15 MUTATED    8  8  2  2
  PCDH15 WILD-TYPE 27 31 17 10
D17V6, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  N0              8               27
  N1              8               31
  N2              2               17
  N3              2               10
                  vv
clus               M0 M1 MX
  PCDH15 MUTATED   18  3  1
  PCDH15 WILD-TYPE 81 10  3
D17V7, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  M0             18               81
  M1              3               10
  MX              1                3
                  vv
clus                I II III IV
  PCDH15 MUTATED    5  3   5  6
  PCDH15 WILD-TYPE 13 29  24 15
D17V8, multiclass
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  I                5               13
  II               3               29
  III              5               24
  IV               6               15
                  vv
clus               R0 R1 R2 RX
  PCDH15 MUTATED   12  1  2  6
  PCDH15 WILD-TYPE 55  4 10 19
D17V9, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  R0             12               55
  R1              1                4
  R2              2               10
  RX              6               19
D17V10, continuous

Clustering(18) Variable = SPRYD5 MUTATION ANALYSIS
D18V1, survival
                  sevent
clus2               0  1
  SPRYD5 MUTATED    2  3
  SPRYD5 WILD-TYPE 69 11
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               5               80 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               3               11 
$`SPRYD5 MUTATED`
TCGA-CG-4306 TCGA-CG-4466 TCGA-CG-5724 TCGA-CG-5726 TCGA-F1-6177 
        1.02        18.94        12.03        28.96         6.54 

$`SPRYD5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.39        20.02         3.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        70.06        15.02 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6874 
        0.62         2.01 

  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
            1.02             0.07 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
           28.96            70.06 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
           12.03             3.83 
[1] "1.0 - 29.0 (12.0)" "0.1 - 70.1 (3.8)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
[1] "hr=" "2.5"
D18V2, continuous
D18V3, binary
                  cls
clus                0  1
  SPRYD5 MUTATED    3  5
  SPRYD5 WILD-TYPE 43 65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRYD5 MUTATED      3    5
  SPRYD5 WILD-TYPE   43   65
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  FEMALE              3               43
  MALE                5               65
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  SPRYD5 MUTATED                                       1
  SPRYD5 WILD-TYPE                                    12
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  SPRYD5 MUTATED                                                        5
  SPRYD5 WILD-TYPE                                                     52
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  SPRYD5 MUTATED                                                   0
  SPRYD5 WILD-TYPE                                                 5
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  SPRYD5 MUTATED                                                    0
  SPRYD5 WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  SPRYD5 MUTATED                                                  0
  SPRYD5 WILD-TYPE                                               10
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  SPRYD5 MUTATED                                                                        2
  SPRYD5 WILD-TYPE                                                                     22
D18V4, multiclass
                  vv
clus               T1 T2 T3 T4
  SPRYD5 MUTATED    2  2  2  1
  SPRYD5 WILD-TYPE  2 44 39 14
D18V5, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  T1              2                2
  T2              2               44
  T3              2               39
  T4              1               14
                  vv
clus               N0 N1 N2 N3
  SPRYD5 MUTATED    2  2  2  1
  SPRYD5 WILD-TYPE 33 37 17 11
D18V6, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  N0              2               33
  N1              2               37
  N2              2               17
  N3              1               11
                  vv
clus               M0 M1 MX
  SPRYD5 MUTATED    5  2  1
  SPRYD5 WILD-TYPE 94 11  3
D18V7, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  M0              5               94
  M1              2               11
  MX              1                3
                  vv
clus                I II III IV
  SPRYD5 MUTATED    3  1   0  3
  SPRYD5 WILD-TYPE 15 31  29 18
D18V8, multiclass
     clus
vv    SPRYD5 MUTATED SPRYD5 WILD-TYPE
  I                3               15
  II               1               31
  III              0               29
  IV               3               18
                  vv
clus               R0 R1 R2 RX
  SPRYD5 MUTATED    4  0  2  2
  SPRYD5 WILD-TYPE 63  5 10 23
D18V9, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  R0              4               63
  R1              0                5
  R2              2               10
  RX              2               23
D18V10, continuous

Clustering(19) Variable = TUSC3 MUTATION ANALYSIS
D19V1, survival
                 sevent
clus2              0  1
  TUSC3 MUTATED    6  1
  TUSC3 WILD-TYPE 65 13
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7              78 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              1              13 
$`TUSC3 MUTATED`
TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6802 TCGA-CG-4460 TCGA-CG-5727 TCGA-D7-6524 
        0.95         1.35         0.76        21.99        31.04         0.69 
TCGA-D7-6818 
        4.04 

$`TUSC3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.70         2.93         4.27         0.62         6.54         2.01 

  TUSC3 MUTATED TUSC3 WILD-TYPE 
           0.69            0.07 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          31.04           70.06 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          1.350           4.075 
[1] "0.7 - 31.0 (1.4)" "0.1 - 70.1 (4.1)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
                 cls
clus               0  1
  TUSC3 MUTATED    3  6
  TUSC3 WILD-TYPE 43 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      3    6
  TUSC3 WILD-TYPE   43   64
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  FEMALE             3              43
  MALE               6              64
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  TUSC3 MUTATED                                       2
  TUSC3 WILD-TYPE                                    11
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  TUSC3 MUTATED                                                        5
  TUSC3 WILD-TYPE                                                     52
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  TUSC3 MUTATED                                                   0
  TUSC3 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  TUSC3 MUTATED                                                    0
  TUSC3 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  TUSC3 MUTATED                                                  0
  TUSC3 WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  TUSC3 MUTATED                                                                        2
  TUSC3 WILD-TYPE                                                                     22
D19V4, multiclass
                 vv
clus              T1 T2 T3 T4
  TUSC3 MUTATED    0  2  5  2
  TUSC3 WILD-TYPE  4 44 36 13
D19V5, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             5              36
  T4             2              13
                 vv
clus              N0 N1 N2 N3
  TUSC3 MUTATED    4  4  0  1
  TUSC3 WILD-TYPE 31 35 19 11
D19V6, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  N0             4              31
  N1             4              35
  N2             0              19
  N3             1              11
                 vv
clus              M0 M1 MX
  TUSC3 MUTATED    7  1  1
  TUSC3 WILD-TYPE 92 12  3
D19V7, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  M0             7              92
  M1             1              12
  MX             1               3
                 vv
clus               I II III IV
  TUSC3 MUTATED    0  4   3  2
  TUSC3 WILD-TYPE 18 28  26 19
D19V8, multiclass
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  I               0              18
  II              4              28
  III             3              26
  IV              2              19
                 vv
clus              R0 R1 R2 RX
  TUSC3 MUTATED    5  1  1  2
  TUSC3 WILD-TYPE 62  4 11 23
D19V9, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  R0             5              62
  R1             1               4
  R2             1              11
  RX             2              23
D19V10, continuous

Clustering(20) Variable = FGF22 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  FGF22 MUTATED    1  1
  FGF22 WILD-TYPE 70 13
  FGF22 MUTATED FGF22 WILD-TYPE 
              2              83 
  FGF22 MUTATED FGF22 WILD-TYPE 
              1              13 
$`FGF22 MUTATED`
TCGA-BR-6452 TCGA-CG-4306 
        0.95         1.02 

$`FGF22 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02        15.95        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  FGF22 MUTATED FGF22 WILD-TYPE 
           0.95            0.07 
  FGF22 MUTATED FGF22 WILD-TYPE 
           1.02           70.06 
  FGF22 MUTATED FGF22 WILD-TYPE 
          0.985           4.040 
[1] "0.9 - 1.0 (1.0)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-6874 
"FGF22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-6874 
"FGF22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-6874 
"FGF22 WILD-TYPE" 
[1] "Remove cluster labels:" "FGF22 MUTATED"         
clus
  FGF22 MUTATED FGF22 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6455      TCGA-BR-6457 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
D20V2, continuous
D20V3, binary
                 cls
clus               0  1
  FGF22 MUTATED    2  1
  FGF22 WILD-TYPE 44 69
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF22 MUTATED      2    1
  FGF22 WILD-TYPE   44   69
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  FEMALE             2              44
  MALE               1              69
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  FGF22 MUTATED                                       0
  FGF22 WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  FGF22 MUTATED                                                        3
  FGF22 WILD-TYPE                                                     54
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  FGF22 MUTATED                                                   0
  FGF22 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  FGF22 MUTATED                                                    0
  FGF22 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  FGF22 MUTATED                                                  0
  FGF22 WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  FGF22 MUTATED                                                                        0
  FGF22 WILD-TYPE                                                                     24
D20V4, multiclass
                 vv
clus              T1 T2 T3 T4
  FGF22 MUTATED    0  0  2  0
  FGF22 WILD-TYPE  4 46 39 15
D20V5, multiclass
[1] "Remove cluster labels:" "FGF22 MUTATED"         
clus
  FGF22 MUTATED FGF22 WILD-TYPE 
              2             104 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4267 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4363      TCGA-BR-4368 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4436      TCGA-CG-4437 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4475 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
                 vv
clus              N0 N1 N2 N3
  FGF22 MUTATED    1  0  1  0
  FGF22 WILD-TYPE 34 39 18 12
D20V6, multiclass
[1] "Remove cluster labels:" "FGF22 MUTATED"         
clus
  FGF22 MUTATED FGF22 WILD-TYPE 
              2             103 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4253      TCGA-BR-4255 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4256      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4367      TCGA-BR-4368 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
                 vv
clus              M0 M1 MX
  FGF22 MUTATED    2  1  0
  FGF22 WILD-TYPE 97 12  4
D20V7, multiclass
    clus
vv   FGF22 MUTATED FGF22 WILD-TYPE
  M0             2              97
  M1             1              12
  MX             0               4
                 vv
clus               I II III IV
  FGF22 MUTATED    0  1   0  1
  FGF22 WILD-TYPE 18 31  29 20
D20V8, multiclass
[1] "Remove cluster labels:" "FGF22 MUTATED"         
clus
  FGF22 MUTATED FGF22 WILD-TYPE 
              2              98 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4267      TCGA-BR-4279 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4280      TCGA-BR-4361      TCGA-BR-4368      TCGA-BR-6453 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
                 vv
clus              R0 R1 R2 RX
  FGF22 MUTATED    1  0  1  1
  FGF22 WILD-TYPE 66  5 11 24
D20V9, multiclass
    clus
vv   FGF22 MUTATED FGF22 WILD-TYPE
  R0             1              66
  R1             0               5
  R2             1              11
  RX             1              24
D20V10, continuous
[1] "Remove cluster labels:" "FGF22 MUTATED"         
clus
  FGF22 MUTATED FGF22 WILD-TYPE 
              1              70 
     TCGA-B7-5816      TCGA-BR-4183      TCGA-BR-4184      TCGA-BR-4188 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4191      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4361 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4362      TCGA-BR-4367      TCGA-BR-4368      TCGA-BR-6453 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 

Clustering(21) Variable = HLA-B MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  HLA-B MUTATED    4  2
  HLA-B WILD-TYPE 67 12
  HLA-B MUTATED HLA-B WILD-TYPE 
              6              79 
  HLA-B MUTATED HLA-B WILD-TYPE 
              2              12 
$`HLA-B MUTATED`
TCGA-B7-5816 TCGA-BR-6852 TCGA-CG-4460 TCGA-CG-5726 TCGA-CG-5728 TCGA-F1-6874 
        5.62         0.26        21.99        28.96        65.10         2.01 

$`HLA-B WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 
        6.54 

  HLA-B MUTATED HLA-B WILD-TYPE 
           0.26            0.07 
  HLA-B MUTATED HLA-B WILD-TYPE 
          65.10           70.06 
  HLA-B MUTATED HLA-B WILD-TYPE 
         13.805           4.010 
[1] "0.3 - 65.1 (13.8)" "0.1 - 70.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
[1] "hr=" "1"  
D21V2, continuous
D21V3, binary
                 cls
clus               0  1
  HLA-B MUTATED    7  2
  HLA-B WILD-TYPE 39 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-B MUTATED      7    2
  HLA-B WILD-TYPE   39   68
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  FEMALE             7              39
  MALE               2              68
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  HLA-B MUTATED                                       1
  HLA-B WILD-TYPE                                    12
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  HLA-B MUTATED                                                        4
  HLA-B WILD-TYPE                                                     53
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  HLA-B MUTATED                                                   0
  HLA-B WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  HLA-B MUTATED                                                    0
  HLA-B WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  HLA-B MUTATED                                                  0
  HLA-B WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  HLA-B MUTATED                                                                        4
  HLA-B WILD-TYPE                                                                     20
D21V4, multiclass
                 vv
clus              T1 T2 T3 T4
  HLA-B MUTATED    1  3  2  3
  HLA-B WILD-TYPE  3 43 39 12
D21V5, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  T1             1               3
  T2             3              43
  T3             2              39
  T4             3              12
                 vv
clus              N0 N1 N2 N3
  HLA-B MUTATED    6  2  0  0
  HLA-B WILD-TYPE 29 37 19 12
D21V6, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  N0             6              29
  N1             2              37
  N2             0              19
  N3             0              12
                 vv
clus              M0 M1 MX
  HLA-B MUTATED    7  1  1
  HLA-B WILD-TYPE 92 12  3
D21V7, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  M0             7              92
  M1             1              12
  MX             1               3
                 vv
clus               I II III IV
  HLA-B MUTATED    3  1   3  1
  HLA-B WILD-TYPE 15 31  26 20
D21V8, multiclass
     clus
vv    HLA-B MUTATED HLA-B WILD-TYPE
  I               3              15
  II              1              31
  III             3              26
  IV              1              20
                 vv
clus              R0 R1 R2 RX
  HLA-B MUTATED    5  0  1  3
  HLA-B WILD-TYPE 62  5 11 22
D21V9, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  R0             5              62
  R1             0               5
  R2             1              11
  RX             3              22
D21V10, continuous

Clustering(22) Variable = PTH2 MUTATION ANALYSIS
D22V1, survival
                sevent
clus2             0  1
  PTH2 MUTATED    2  0
  PTH2 WILD-TYPE 69 14
  PTH2 MUTATED PTH2 WILD-TYPE 
             2             83 
  PTH2 MUTATED PTH2 WILD-TYPE 
             0             14 
$`PTH2 MUTATED`
TCGA-BR-6706 TCGA-D7-6519 
        2.17        15.65 

$`PTH2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         0.62         1.71         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  PTH2 MUTATED PTH2 WILD-TYPE 
          2.17           0.07 
  PTH2 MUTATED PTH2 WILD-TYPE 
         15.65          70.06 
  PTH2 MUTATED PTH2 WILD-TYPE 
          8.91           4.01 
[1] "2.2 - 15.7 (8.9)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6874 
"PTH2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6874 
"PTH2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6874 
"PTH2 WILD-TYPE" 
[1] "Remove cluster labels:" "PTH2 MUTATED"          
clus
  PTH2 MUTATED PTH2 WILD-TYPE 
             2             83 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6707     TCGA-BR-6709 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4462 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4472 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6520 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
D22V2, continuous
D22V3, binary
                cls
clus              0  1
  PTH2 MUTATED    2  1
  PTH2 WILD-TYPE 44 69
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTH2 MUTATED      2    1
  PTH2 WILD-TYPE   44   69
        clus
vv       PTH2 MUTATED PTH2 WILD-TYPE
  FEMALE            2             44
  MALE              1             69
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  PTH2 MUTATED                                       1
  PTH2 WILD-TYPE                                    12
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  PTH2 MUTATED                                                        2
  PTH2 WILD-TYPE                                                     55
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  PTH2 MUTATED                                                   0
  PTH2 WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  PTH2 MUTATED                                                    0
  PTH2 WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  PTH2 MUTATED                                                  0
  PTH2 WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  PTH2 MUTATED                                                                        0
  PTH2 WILD-TYPE                                                                     24
D22V4, multiclass
                vv
clus             T1 T2 T3 T4
  PTH2 MUTATED    0  1  2  0
  PTH2 WILD-TYPE  4 45 39 15
D22V5, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  T1            0              4
  T2            1             45
  T3            2             39
  T4            0             15
                vv
clus             N0 N1 N2 N3
  PTH2 MUTATED    0  3  0  0
  PTH2 WILD-TYPE 35 36 19 12
D22V6, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  N0            0             35
  N1            3             36
  N2            0             19
  N3            0             12
                vv
clus             M0 M1 MX
  PTH2 MUTATED    3  0  0
  PTH2 WILD-TYPE 96 13  4
D22V7, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  M0            3             96
  M1            0             13
  MX            0              4
                vv
clus              I II III IV
  PTH2 MUTATED    0  1   2  0
  PTH2 WILD-TYPE 18 31  27 21
D22V8, multiclass
     clus
vv    PTH2 MUTATED PTH2 WILD-TYPE
  I              0             18
  II             1             31
  III            2             27
  IV             0             21
                vv
clus             R0 R1 R2 RX
  PTH2 MUTATED    3  0  0  0
  PTH2 WILD-TYPE 64  5 12 25
D22V9, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  R0            3             64
  R1            0              5
  R2            0             12
  RX            0             25
D22V10, continuous

Clustering(23) Variable = C17ORF63 MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  C17ORF63 MUTATED    2  0
  C17ORF63 WILD-TYPE 69 14
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 2                 83 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 0                 14 
$`C17ORF63 MUTATED`
TCGA-B7-5816 TCGA-CG-4436 
        5.62        52.96 

$`C17ORF63 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
       20.02         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
              5.62               0.07 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
             52.96              70.06 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
             29.29               4.01 
[1] "5.6 - 53.0 (29.3)" "0.1 - 70.1 (4.0)" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
[1] "Remove cluster labels:" "C17ORF63 MUTATED"      
clus
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 2                 83 
        TCGA-B7-5818         TCGA-BR-6452         TCGA-BR-6455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6457         TCGA-BR-6458         TCGA-BR-6564 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-CD-5798 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5813 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4300         TCGA-CG-4301         TCGA-CG-4304 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4305         TCGA-CG-4306         TCGA-CG-4437 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4438         TCGA-CG-4440         TCGA-CG-4441 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4443         TCGA-CG-4444         TCGA-CG-4449 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4455         TCGA-CG-4460         TCGA-CG-4462 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4465         TCGA-CG-4466         TCGA-CG-4469 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4472         TCGA-CG-4474         TCGA-CG-4477 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5716         TCGA-CG-5717         TCGA-CG-5718 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5719         TCGA-CG-5720         TCGA-CG-5721 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5722         TCGA-CG-5723         TCGA-CG-5724 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5725         TCGA-CG-5726         TCGA-CG-5727 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6526         TCGA-D7-6527         TCGA-D7-6528 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-EQ-5647 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6177         TCGA-F1-6874 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
D23V2, continuous
D23V3, binary
                    cls
clus                  0  1
  C17ORF63 MUTATED    2  1
  C17ORF63 WILD-TYPE 44 69
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C17ORF63 MUTATED      2    1
  C17ORF63 WILD-TYPE   44   69
        clus
vv       C17ORF63 MUTATED C17ORF63 WILD-TYPE
  FEMALE                2                 44
  MALE                  1                 69
                    vv
clus                 STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  C17ORF63 MUTATED                                       1
  C17ORF63 WILD-TYPE                                    12
                    vv
clus                 STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  C17ORF63 MUTATED                                                        1
  C17ORF63 WILD-TYPE                                                     56
                    vv
clus                 STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  C17ORF63 MUTATED                                                   0
  C17ORF63 WILD-TYPE                                                 5
                    vv
clus                 STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  C17ORF63 MUTATED                                                    0
  C17ORF63 WILD-TYPE                                                  2
                    vv
clus                 STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  C17ORF63 MUTATED                                                  0
  C17ORF63 WILD-TYPE                                               10
                    vv
clus                 STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  C17ORF63 MUTATED                                                                        1
  C17ORF63 WILD-TYPE                                                                     23
D23V4, multiclass
                    vv
clus                 T1 T2 T3 T4
  C17ORF63 MUTATED    0  1  0  2
  C17ORF63 WILD-TYPE  4 45 41 13
D23V5, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  T1                0                  4
  T2                1                 45
  T3                0                 41
  T4                2                 13
                    vv
clus                 N0 N1 N2 N3
  C17ORF63 MUTATED    2  0  1  0
  C17ORF63 WILD-TYPE 33 39 18 12
D23V6, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  N0                2                 33
  N1                0                 39
  N2                1                 18
  N3                0                 12
                    vv
clus                 M0 M1 MX
  C17ORF63 MUTATED    3  0  0
  C17ORF63 WILD-TYPE 96 13  4
D23V7, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  M0                3                 96
  M1                0                 13
  MX                0                  4
                    vv
clus                  I II III IV
  C17ORF63 MUTATED    1  0   1  1
  C17ORF63 WILD-TYPE 17 32  28 20
D23V8, multiclass
     clus
vv    C17ORF63 MUTATED C17ORF63 WILD-TYPE
  I                  1                 17
  II                 0                 32
  III                1                 28
  IV                 1                 20
                    vv
clus                 R0 R1 R2 RX
  C17ORF63 MUTATED    2  0  0  1
  C17ORF63 WILD-TYPE 65  5 12 24
D23V9, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  R0                2                 65
  R1                0                  5
  R2                0                 12
  RX                1                 24
D23V10, continuous
[1] "Remove cluster labels:" "C17ORF63 MUTATED"      
clus
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 2                 69 
        TCGA-BR-4183         TCGA-BR-4184         TCGA-BR-4188 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-4191         TCGA-BR-4253         TCGA-BR-4255 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-4256         TCGA-BR-4267         TCGA-BR-4279 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-4280         TCGA-BR-4361         TCGA-BR-4362 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-4367         TCGA-BR-6452         TCGA-BR-6453 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6454         TCGA-BR-6455         TCGA-BR-6456 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6457         TCGA-BR-6458         TCGA-BR-6564 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-CG-5717 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5718         TCGA-CG-5719         TCGA-CG-5720 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5721         TCGA-CG-5722         TCGA-CG-5723 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5724         TCGA-CG-5725         TCGA-CG-5726 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-EQ-5647         TCGA-F1-6177         TCGA-F1-6874 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 

Clustering(24) Variable = SMAD4 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED    3  1
  SMAD4 WILD-TYPE 68 13
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              4              81 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              13 
$`SMAD4 MUTATED`
TCGA-CD-5799 TCGA-CG-4469 TCGA-CG-5719 TCGA-D7-6815 
        0.69         7.07         1.02         3.65 

$`SMAD4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.82         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        4.14         1.68         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.69            0.07 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
           7.07           70.06 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          2.335           4.040 
[1] "0.7 - 7.1 (2.3)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
[1] "hr=" "5"  
D24V2, continuous
D24V3, binary
                 cls
clus               0  1
  SMAD4 MUTATED    2  5
  SMAD4 WILD-TYPE 44 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      2    5
  SMAD4 WILD-TYPE   44   65
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE             2              44
  MALE               5              65
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  SMAD4 MUTATED                                       0
  SMAD4 WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  SMAD4 MUTATED                                                        3
  SMAD4 WILD-TYPE                                                     54
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  SMAD4 MUTATED                                                   0
  SMAD4 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  SMAD4 MUTATED                                                    0
  SMAD4 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  SMAD4 MUTATED                                                  1
  SMAD4 WILD-TYPE                                                9
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  SMAD4 MUTATED                                                                        3
  SMAD4 WILD-TYPE                                                                     21
D24V4, multiclass
                 vv
clus              T1 T2 T3 T4
  SMAD4 MUTATED    0  4  2  1
  SMAD4 WILD-TYPE  4 42 39 14
D24V5, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               4
  T2             4              42
  T3             2              39
  T4             1              14
                 vv
clus              N0 N1 N2 N3
  SMAD4 MUTATED    2  3  1  1
  SMAD4 WILD-TYPE 33 36 18 11
D24V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0             2              33
  N1             3              36
  N2             1              18
  N3             1              11
                 vv
clus              M0 M1 MX
  SMAD4 MUTATED    5  1  1
  SMAD4 WILD-TYPE 94 12  3
D24V7, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             5              94
  M1             1              12
  MX             1               3
                 vv
clus               I II III IV
  SMAD4 MUTATED    1  2   2  2
  SMAD4 WILD-TYPE 17 30  27 19
D24V8, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  I               1              17
  II              2              30
  III             2              27
  IV              2              19
                 vv
clus              R0 R1 R2 RX
  SMAD4 MUTATED    2  1  0  3
  SMAD4 WILD-TYPE 65  4 12 22
D24V9, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  R0             2              65
  R1             1               4
  R2             0              12
  RX             3              22
D24V10, continuous

Clustering(25) Variable = POTEG MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  POTEG MUTATED    3  0
  POTEG WILD-TYPE 68 14
  POTEG MUTATED POTEG WILD-TYPE 
              3              82 
  POTEG MUTATED POTEG WILD-TYPE 
              0              14 
$`POTEG MUTATED`
TCGA-CD-5798 TCGA-CG-5723 TCGA-CG-5728 
        0.82        70.06        65.10 

$`POTEG WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        31.04         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  POTEG MUTATED POTEG WILD-TYPE 
           0.82            0.07 
  POTEG MUTATED POTEG WILD-TYPE 
          70.06           55.04 
  POTEG MUTATED POTEG WILD-TYPE 
          65.10            4.01 
[1] "0.8 - 70.1 (65.1)" "0.1 - 55.0 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-F1-6874 
"POTEG WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-F1-6874 
"POTEG WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-F1-6874 
"POTEG WILD-TYPE" 
[1] "hr="     "8.2e+07"
D25V2, continuous
D25V3, binary
                 cls
clus               0  1
  POTEG MUTATED    3  3
  POTEG WILD-TYPE 43 67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      3    3
  POTEG WILD-TYPE   43   67
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  FEMALE             3              43
  MALE               3              67
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  POTEG MUTATED                                       0
  POTEG WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  POTEG MUTATED                                                        4
  POTEG WILD-TYPE                                                     53
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  POTEG MUTATED                                                   1
  POTEG WILD-TYPE                                                 4
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  POTEG MUTATED                                                    0
  POTEG WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  POTEG MUTATED                                                  0
  POTEG WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  POTEG MUTATED                                                                        1
  POTEG WILD-TYPE                                                                     23
D25V4, multiclass
                 vv
clus              T1 T2 T3 T4
  POTEG MUTATED    0  3  1  1
  POTEG WILD-TYPE  4 43 40 14
D25V5, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  T1             0               4
  T2             3              43
  T3             1              40
  T4             1              14
                 vv
clus              N0 N1 N2 N3
  POTEG MUTATED    3  3  0  0
  POTEG WILD-TYPE 32 36 19 12
D25V6, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  N0             3              32
  N1             3              36
  N2             0              19
  N3             0              12
                 vv
clus              M0 M1 MX
  POTEG MUTATED    6  0  0
  POTEG WILD-TYPE 93 13  4
D25V7, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  M0             6              93
  M1             0              13
  MX             0               4
                 vv
clus               I II III IV
  POTEG MUTATED    1  2   2  0
  POTEG WILD-TYPE 17 30  27 21
D25V8, multiclass
     clus
vv    POTEG MUTATED POTEG WILD-TYPE
  I               1              17
  II              2              30
  III             2              27
  IV              0              21
                 vv
clus              R0 R1 R2 RX
  POTEG MUTATED    2  0  0  3
  POTEG WILD-TYPE 65  5 12 22
D25V9, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  R0             2              65
  R1             0               5
  R2             0              12
  RX             3              22
D25V10, continuous

Clustering(26) Variable = RNF43 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2              0  1
  RNF43 MUTATED    1  5
  RNF43 WILD-TYPE 70  9
  RNF43 MUTATED RNF43 WILD-TYPE 
              6              79 
  RNF43 MUTATED RNF43 WILD-TYPE 
              5               9 
$`RNF43 MUTATED`
TCGA-CG-4469 TCGA-CG-5720 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 
        7.07         0.99        28.96        65.10        21.07         7.99 

$`RNF43 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5578 
       15.02        31.04         4.01        55.04         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  RNF43 MUTATED RNF43 WILD-TYPE 
           0.99            0.07 
  RNF43 MUTATED RNF43 WILD-TYPE 
          65.10           70.06 
  RNF43 MUTATED RNF43 WILD-TYPE 
          14.53            3.65 
[1] "1.0 - 65.1 (14.5)" "0.1 - 70.1 (3.6)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
[1] "hr=" "3.3"
D26V2, continuous
D26V3, binary
                 cls
clus               0  1
  RNF43 MUTATED    7  6
  RNF43 WILD-TYPE 39 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      7    6
  RNF43 WILD-TYPE   39   64
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  FEMALE             7              39
  MALE               6              64
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  RNF43 MUTATED                                       0
  RNF43 WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  RNF43 MUTATED                                                        7
  RNF43 WILD-TYPE                                                     50
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  RNF43 MUTATED                                                   0
  RNF43 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  RNF43 MUTATED                                                    0
  RNF43 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  RNF43 MUTATED                                                  0
  RNF43 WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  RNF43 MUTATED                                                                        6
  RNF43 WILD-TYPE                                                                     18
D26V4, multiclass
                 vv
clus              T1 T2 T3 T4
  RNF43 MUTATED    2  6  2  2
  RNF43 WILD-TYPE  2 40 39 13
D26V5, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  T1             2               2
  T2             6              40
  T3             2              39
  T4             2              13
                 vv
clus              N0 N1 N2 N3
  RNF43 MUTATED    5  3  2  1
  RNF43 WILD-TYPE 30 36 17 11
D26V6, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  N0             5              30
  N1             3              36
  N2             2              17
  N3             1              11
                 vv
clus              M0 M1 MX
  RNF43 MUTATED   13  0  0
  RNF43 WILD-TYPE 86 13  4
D26V7, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  M0            13              86
  M1             0              13
  MX             0               4
                 vv
clus               I II III IV
  RNF43 MUTATED    4  1   3  2
  RNF43 WILD-TYPE 14 31  26 19
D26V8, multiclass
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  I               4              14
  II              1              31
  III             3              26
  IV              2              19
                 vv
clus              R0 R1 R2 RX
  RNF43 MUTATED    7  1  0  5
  RNF43 WILD-TYPE 60  4 12 20
D26V9, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  R0             7              60
  R1             1               4
  R2             0              12
  RX             5              20
D26V10, continuous

Clustering(27) Variable = WBSCR17 MUTATION ANALYSIS
D27V1, survival
                   sevent
clus2                0  1
  WBSCR17 MUTATED    4  4
  WBSCR17 WILD-TYPE 67 10
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                8                77 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                4                10 
$`WBSCR17 MUTATED`
TCGA-BR-6452 TCGA-BR-6458 TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-5721 TCGA-CG-5726 
        0.95         1.35         1.02         4.01         5.98        28.96 
TCGA-CG-5728 TCGA-CG-5733 
       65.10        21.07 

$`WBSCR17 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95        52.96         8.05        54.05 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 
        0.95        70.06        12.03        15.02        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             0.95              0.07 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            65.10             70.06 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            4.995             4.010 
[1] "0.9 - 65.1 (5.0)" "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
[1] "hr=" "2.5"
D27V2, continuous
D27V3, binary
                   cls
clus                 0  1
  WBSCR17 MUTATED    6  6
  WBSCR17 WILD-TYPE 40 64
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      6    6
  WBSCR17 WILD-TYPE   40   64
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               6                40
  MALE                 6                64
                   vv
clus                STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  WBSCR17 MUTATED                                       0
  WBSCR17 WILD-TYPE                                    13
                   vv
clus                STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  WBSCR17 MUTATED                                                        7
  WBSCR17 WILD-TYPE                                                     50
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  WBSCR17 MUTATED                                                   0
  WBSCR17 WILD-TYPE                                                 5
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  WBSCR17 MUTATED                                                    0
  WBSCR17 WILD-TYPE                                                  2
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  WBSCR17 MUTATED                                                  0
  WBSCR17 WILD-TYPE                                               10
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  WBSCR17 MUTATED                                                                        5
  WBSCR17 WILD-TYPE                                                                     19
D27V4, multiclass
                   vv
clus                T1 T2 T3 T4
  WBSCR17 MUTATED    1  3  5  1
  WBSCR17 WILD-TYPE  3 43 36 14
D27V5, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               1                 3
  T2               3                43
  T3               5                36
  T4               1                14
                   vv
clus                N0 N1 N2 N3
  WBSCR17 MUTATED    3  5  2  1
  WBSCR17 WILD-TYPE 32 34 17 11
D27V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0               3                32
  N1               5                34
  N2               2                17
  N3               1                11
                   vv
clus                M0 M1 MX
  WBSCR17 MUTATED    9  2  1
  WBSCR17 WILD-TYPE 90 11  3
D27V7, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               9                90
  M1               2                11
  MX               1                 3
                   vv
clus                 I II III IV
  WBSCR17 MUTATED    2  3   2  3
  WBSCR17 WILD-TYPE 16 29  27 18
D27V8, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  I                 2                16
  II                3                29
  III               2                27
  IV                3                18
                   vv
clus                R0 R1 R2 RX
  WBSCR17 MUTATED    7  0  2  3
  WBSCR17 WILD-TYPE 60  5 10 22
D27V9, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  R0               7                60
  R1               0                 5
  R2               2                10
  RX               3                22
D27V10, continuous

Clustering(28) Variable = PHF2 MUTATION ANALYSIS
D28V1, survival
                sevent
clus2             0  1
  PHF2 MUTATED    4  2
  PHF2 WILD-TYPE 67 12
  PHF2 MUTATED PHF2 WILD-TYPE 
             6             79 
  PHF2 MUTATED PHF2 WILD-TYPE 
             2             12 
$`PHF2 MUTATED`
TCGA-BR-6852 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5733 TCGA-F1-6177 TCGA-F1-6874 
        0.26        70.06        28.96        21.07         6.54         2.01 

$`PHF2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       15.02        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 
        0.62 

  PHF2 MUTATED PHF2 WILD-TYPE 
          0.26           0.07 
  PHF2 MUTATED PHF2 WILD-TYPE 
         70.06          65.10 
  PHF2 MUTATED PHF2 WILD-TYPE 
        13.805          4.010 
[1] "0.3 - 70.1 (13.8)" "0.1 - 65.1 (4.0)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" 
    TCGA-F1-6874 
  "PHF2 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" 
    TCGA-F1-6874 
  "PHF2 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" 
    TCGA-F1-6874 
  "PHF2 MUTATED" 
[1] "hr=" "1.1"
D28V2, continuous
D28V3, binary
                cls
clus              0  1
  PHF2 MUTATED    6  6
  PHF2 WILD-TYPE 40 64
[1] "tbl2"
                cls
clus             [,1] [,2]
  PHF2 MUTATED      6    6
  PHF2 WILD-TYPE   40   64
        clus
vv       PHF2 MUTATED PHF2 WILD-TYPE
  FEMALE            6             40
  MALE              6             64
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  PHF2 MUTATED                                       0
  PHF2 WILD-TYPE                                    13
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  PHF2 MUTATED                                                        8
  PHF2 WILD-TYPE                                                     49
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  PHF2 MUTATED                                                   0
  PHF2 WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  PHF2 MUTATED                                                    0
  PHF2 WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  PHF2 MUTATED                                                  0
  PHF2 WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  PHF2 MUTATED                                                                        4
  PHF2 WILD-TYPE                                                                     20
D28V4, multiclass
                vv
clus             T1 T2 T3 T4
  PHF2 MUTATED    3  4  3  1
  PHF2 WILD-TYPE  1 42 38 14
D28V5, multiclass
    clus
vv   PHF2 MUTATED PHF2 WILD-TYPE
  T1            3              1
  T2            4             42
  T3            3             38
  T4            1             14
                vv
clus             N0 N1 N2 N3
  PHF2 MUTATED    5  4  1  0
  PHF2 WILD-TYPE 30 35 18 12
D28V6, multiclass
    clus
vv   PHF2 MUTATED PHF2 WILD-TYPE
  N0            5             30
  N1            4             35
  N2            1             18
  N3            0             12
                vv
clus             M0 M1 MX
  PHF2 MUTATED    9  0  3
  PHF2 WILD-TYPE 90 13  1
D28V7, multiclass
    clus
vv   PHF2 MUTATED PHF2 WILD-TYPE
  M0            9             90
  M1            0             13
  MX            3              1
                vv
clus              I II III IV
  PHF2 MUTATED    4  2   3  0
  PHF2 WILD-TYPE 14 30  26 21
D28V8, multiclass
     clus
vv    PHF2 MUTATED PHF2 WILD-TYPE
  I              4             14
  II             2             30
  III            3             26
  IV             0             21
                vv
clus             R0 R1 R2 RX
  PHF2 MUTATED    7  0  0  5
  PHF2 WILD-TYPE 60  5 12 20
D28V9, multiclass
    clus
vv   PHF2 MUTATED PHF2 WILD-TYPE
  R0            7             60
  R1            0              5
  R2            0             12
  RX            5             20
D28V10, continuous

Clustering(29) Variable = TPTE MUTATION ANALYSIS
D29V1, survival
                sevent
clus2             0  1
  TPTE MUTATED    7  1
  TPTE WILD-TYPE 64 13
  TPTE MUTATED TPTE WILD-TYPE 
             8             77 
  TPTE MUTATED TPTE WILD-TYPE 
             1             13 
$`TPTE MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-CD-5800 TCGA-CG-4465 TCGA-CG-5719 
        0.10         1.35         0.62         0.36         8.98         1.02 
TCGA-CG-5721 TCGA-D7-6527 
        5.98         4.14 

$`TPTE WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6566 
        5.62         0.95         1.41         1.35         0.82         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        1.71         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        0.76         0.66         0.26         0.82         0.69         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.30         0.07         0.39        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        1.02         6.94         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  TPTE MUTATED TPTE WILD-TYPE 
          0.10           0.07 
  TPTE MUTATED TPTE WILD-TYPE 
          8.98          70.06 
  TPTE MUTATED TPTE WILD-TYPE 
         1.185          4.040 
[1] "0.1 - 9.0 (1.2)"  "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
[1] "hr=" "2.5"
D29V2, continuous
D29V3, binary
                cls
clus              0  1
  TPTE MUTATED    7  7
  TPTE WILD-TYPE 39 63
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      7    7
  TPTE WILD-TYPE   39   63
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            7             39
  MALE              7             63
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  TPTE MUTATED                                       1
  TPTE WILD-TYPE                                    12
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  TPTE MUTATED                                                        7
  TPTE WILD-TYPE                                                     50
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  TPTE MUTATED                                                   0
  TPTE WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  TPTE MUTATED                                                    2
  TPTE WILD-TYPE                                                  0
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  TPTE MUTATED                                                  0
  TPTE WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  TPTE MUTATED                                                                        3
  TPTE WILD-TYPE                                                                     21
D29V4, multiclass
                vv
clus             T1 T2 T3 T4
  TPTE MUTATED    0  4  4  4
  TPTE WILD-TYPE  4 42 37 11
D29V5, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            0              4
  T2            4             42
  T3            4             37
  T4            4             11
                vv
clus             N0 N1 N2 N3
  TPTE MUTATED    6  5  0  1
  TPTE WILD-TYPE 29 34 19 11
D29V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0            6             29
  N1            5             34
  N2            0             19
  N3            1             11
                vv
clus             M0 M1 MX
  TPTE MUTATED   11  2  1
  TPTE WILD-TYPE 88 11  3
D29V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  M0           11             88
  M1            2             11
  MX            1              3
                vv
clus              I II III IV
  TPTE MUTATED    2  4   3  3
  TPTE WILD-TYPE 16 28  26 18
D29V8, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  I              2             16
  II             4             28
  III            3             26
  IV             3             18
                vv
clus             R0 R1 R2 RX
  TPTE MUTATED    7  0  1  5
  TPTE WILD-TYPE 60  5 11 20
D29V9, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  R0            7             60
  R1            0              5
  R2            1             11
  RX            5             20
D29V10, continuous

Clustering(30) Variable = CDH1 MUTATION ANALYSIS
D30V1, survival
                sevent
clus2             0  1
  CDH1 MUTATED    8  0
  CDH1 WILD-TYPE 63 14
  CDH1 MUTATED CDH1 WILD-TYPE 
             8             77 
  CDH1 MUTATED CDH1 WILD-TYPE 
             0             14 
$`CDH1 MUTATED`
TCGA-BR-6452 TCGA-BR-6803 TCGA-CD-5799 TCGA-CD-5813 TCGA-CG-4474 TCGA-D7-6518 
        0.95         0.66         0.69         0.39         1.02         9.80 
TCGA-D7-6522 TCGA-F1-6874 
        6.90         2.01 

$`CDH1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5800 
        0.66         1.12         0.76         0.26         0.82         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.95        70.06        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 
        3.58         4.54        15.65         9.63         8.19         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.04         2.93         4.27         0.62         6.54 

  CDH1 MUTATED CDH1 WILD-TYPE 
          0.39           0.07 
  CDH1 MUTATED CDH1 WILD-TYPE 
          9.80          70.06 
  CDH1 MUTATED CDH1 WILD-TYPE 
         0.985          4.140 
[1] "0.4 - 9.8 (1.0)"  "0.1 - 70.1 (4.1)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6874 
  "CDH1 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6874 
  "CDH1 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6874 
  "CDH1 MUTATED" 
[1] "hr="     "2.7e+07"
D30V2, continuous
D30V3, binary
                cls
clus              0  1
  CDH1 MUTATED    5  6
  CDH1 WILD-TYPE 41 64
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED      5    6
  CDH1 WILD-TYPE   41   64
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  FEMALE            5             41
  MALE              6             64
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  CDH1 MUTATED                                       4
  CDH1 WILD-TYPE                                     9
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  CDH1 MUTATED                                                        4
  CDH1 WILD-TYPE                                                     53
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  CDH1 MUTATED                                                   1
  CDH1 WILD-TYPE                                                 4
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  CDH1 MUTATED                                                    0
  CDH1 WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  CDH1 MUTATED                                                  0
  CDH1 WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  CDH1 MUTATED                                                                        2
  CDH1 WILD-TYPE                                                                     22
D30V4, multiclass
                vv
clus             T1 T2 T3 T4
  CDH1 MUTATED    1  5  3  1
  CDH1 WILD-TYPE  3 41 38 14
D30V5, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  T1            1              3
  T2            5             41
  T3            3             38
  T4            1             14
                vv
clus             N0 N1 N2 N3
  CDH1 MUTATED    5  3  1  1
  CDH1 WILD-TYPE 30 36 18 11
D30V6, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  N0            5             30
  N1            3             36
  N2            1             18
  N3            1             11
                vv
clus             M0 M1 MX
  CDH1 MUTATED   10  1  0
  CDH1 WILD-TYPE 89 12  4
D30V7, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  M0           10             89
  M1            1             12
  MX            0              4
                vv
clus              I II III IV
  CDH1 MUTATED    2  5   0  2
  CDH1 WILD-TYPE 16 27  29 19
D30V8, multiclass
     clus
vv    CDH1 MUTATED CDH1 WILD-TYPE
  I              2             16
  II             5             27
  III            0             29
  IV             2             19
                vv
clus             R0 R1 R2 RX
  CDH1 MUTATED    4  1  1  3
  CDH1 WILD-TYPE 63  4 11 22
D30V9, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  R0            4             63
  R1            1              4
  R2            1             11
  RX            3             22
D30V10, continuous

Clustering(31) Variable = CPS1 MUTATION ANALYSIS
D31V1, survival
                sevent
clus2             0  1
  CPS1 MUTATED    7  1
  CPS1 WILD-TYPE 64 13
  CPS1 MUTATED CPS1 WILD-TYPE 
             8             77 
  CPS1 MUTATED CPS1 WILD-TYPE 
             1             13 
$`CPS1 MUTATED`
TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6707 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4472 
        0.95         1.35         0.99        47.05         7.07        12.00 
TCGA-CG-5721 TCGA-F1-6874 
        5.98         2.01 

$`CPS1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.76         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        14.01        29.98        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        1.02         8.98        18.94         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.04         2.93         4.27         0.62         6.54 

  CPS1 MUTATED CPS1 WILD-TYPE 
          0.95           0.07 
  CPS1 MUTATED CPS1 WILD-TYPE 
         47.05          70.06 
  CPS1 MUTATED CPS1 WILD-TYPE 
         3.995          4.010 
[1] "0.9 - 47.0 (4.0)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-F1-6874 
  "CPS1 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-F1-6874 
  "CPS1 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-F1-6874 
  "CPS1 MUTATED" 
[1] "hr=" "1.2"
D31V2, continuous
D31V3, binary
                cls
clus              0  1
  CPS1 MUTATED    3 10
  CPS1 WILD-TYPE 43 60
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      3   10
  CPS1 WILD-TYPE   43   60
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  FEMALE            3             43
  MALE             10             60
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  CPS1 MUTATED                                       0
  CPS1 WILD-TYPE                                    13
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  CPS1 MUTATED                                                        8
  CPS1 WILD-TYPE                                                     49
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  CPS1 MUTATED                                                   0
  CPS1 WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  CPS1 MUTATED                                                    0
  CPS1 WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  CPS1 MUTATED                                                  0
  CPS1 WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  CPS1 MUTATED                                                                        3
  CPS1 WILD-TYPE                                                                     21
D31V4, multiclass
                vv
clus             T1 T2 T3 T4
  CPS1 MUTATED    0  4  5  3
  CPS1 WILD-TYPE  4 42 36 12
D31V5, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  T1            0              4
  T2            4             42
  T3            5             36
  T4            3             12
                vv
clus             N0 N1 N2 N3
  CPS1 MUTATED    6  3  1  1
  CPS1 WILD-TYPE 29 36 18 11
D31V6, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  N0            6             29
  N1            3             36
  N2            1             18
  N3            1             11
                vv
clus             M0 M1 MX
  CPS1 MUTATED   12  0  1
  CPS1 WILD-TYPE 87 13  3
D31V7, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  M0           12             87
  M1            0             13
  MX            1              3
                vv
clus              I II III IV
  CPS1 MUTATED    2  3   3  3
  CPS1 WILD-TYPE 16 29  26 18
D31V8, multiclass
     clus
vv    CPS1 MUTATED CPS1 WILD-TYPE
  I              2             16
  II             3             29
  III            3             26
  IV             3             18
                vv
clus             R0 R1 R2 RX
  CPS1 MUTATED    7  1  0  5
  CPS1 WILD-TYPE 60  4 12 20
D31V9, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  R0            7             60
  R1            1              4
  R2            0             12
  RX            5             20
D31V10, continuous

Clustering(32) Variable = INO80E MUTATION ANALYSIS
D32V1, survival
                  sevent
clus2               0  1
  INO80E MUTATED    1  1
  INO80E WILD-TYPE 70 13
  INO80E MUTATED INO80E WILD-TYPE 
               2               83 
  INO80E MUTATED INO80E WILD-TYPE 
               1               13 
$`INO80E MUTATED`
TCGA-CG-4460 TCGA-CG-5721 
       21.99         5.98 

$`INO80E WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  INO80E MUTATED INO80E WILD-TYPE 
            5.98             0.07 
  INO80E MUTATED INO80E WILD-TYPE 
           21.99            70.06 
  INO80E MUTATED INO80E WILD-TYPE 
          13.985            4.010 
[1] "6.0 - 22.0 (14.0)" "0.1 - 70.1 (4.0)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
[1] "Remove cluster labels:" "INO80E MUTATED"        
clus
  INO80E MUTATED INO80E WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4462 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5722 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
D32V2, continuous
D32V3, binary
                  cls
clus                0  1
  INO80E MUTATED    4  1
  INO80E WILD-TYPE 42 69
[1] "tbl2"
                  cls
clus               [,1] [,2]
  INO80E MUTATED      4    1
  INO80E WILD-TYPE   42   69
        clus
vv       INO80E MUTATED INO80E WILD-TYPE
  FEMALE              4               42
  MALE                1               69
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  INO80E MUTATED                                       0
  INO80E WILD-TYPE                                    13
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  INO80E MUTATED                                                        3
  INO80E WILD-TYPE                                                     54
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  INO80E MUTATED                                                   0
  INO80E WILD-TYPE                                                 5
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  INO80E MUTATED                                                    0
  INO80E WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  INO80E MUTATED                                                  0
  INO80E WILD-TYPE                                               10
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  INO80E MUTATED                                                                        2
  INO80E WILD-TYPE                                                                     22
D32V4, multiclass
                  vv
clus               T1 T2 T3 T4
  INO80E MUTATED    0  0  0  4
  INO80E WILD-TYPE  4 46 41 11
D32V5, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  T1              0                4
  T2              0               46
  T3              0               41
  T4              4               11
                  vv
clus               N0 N1 N2 N3
  INO80E MUTATED    1  3  1  0
  INO80E WILD-TYPE 34 36 18 12
D32V6, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  N0              1               34
  N1              3               36
  N2              1               18
  N3              0               12
                  vv
clus               M0 M1 MX
  INO80E MUTATED    4  1  0
  INO80E WILD-TYPE 95 12  4
D32V7, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  M0              4               95
  M1              1               12
  MX              0                4
                  vv
clus                I II III IV
  INO80E MUTATED    0  0   1  3
  INO80E WILD-TYPE 18 32  28 18
D32V8, multiclass
     clus
vv    INO80E MUTATED INO80E WILD-TYPE
  I                0               18
  II               0               32
  III              1               28
  IV               3               18
                  vv
clus               R0 R1 R2 RX
  INO80E MUTATED    1  0  1  3
  INO80E WILD-TYPE 66  5 11 22
D32V9, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  R0              1               66
  R1              0                5
  R2              1               11
  RX              3               22
D32V10, continuous

Clustering(33) Variable = ELF3 MUTATION ANALYSIS
D33V1, survival
                sevent
clus2             0  1
  ELF3 MUTATED    3  1
  ELF3 WILD-TYPE 68 13
  ELF3 MUTATED ELF3 WILD-TYPE 
             4             81 
  ELF3 MUTATED ELF3 WILD-TYPE 
             1             13 
$`ELF3 MUTATED`
TCGA-BR-6852 TCGA-CG-5721 TCGA-CG-5733 TCGA-F1-6874 
        0.26         5.98        21.07         2.01 

$`ELF3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.27         0.62         6.54 

  ELF3 MUTATED ELF3 WILD-TYPE 
          0.26           0.07 
  ELF3 MUTATED ELF3 WILD-TYPE 
         21.07          70.06 
  ELF3 MUTATED ELF3 WILD-TYPE 
         3.995          4.010 
[1] "0.3 - 21.1 (4.0)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F1-6874 
  "ELF3 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F1-6874 
  "ELF3 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F1-6874 
  "ELF3 MUTATED" 
[1] "hr=" "1.9"
D33V2, continuous
D33V3, binary
                cls
clus              0  1
  ELF3 MUTATED    3  2
  ELF3 WILD-TYPE 43 68
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      3    2
  ELF3 WILD-TYPE   43   68
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  FEMALE            3             43
  MALE              2             68
                vv
clus             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  ELF3 MUTATED                                       0
  ELF3 WILD-TYPE                                    13
                vv
clus             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  ELF3 MUTATED                                                        2
  ELF3 WILD-TYPE                                                     55
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  ELF3 MUTATED                                                   0
  ELF3 WILD-TYPE                                                 5
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  ELF3 MUTATED                                                    0
  ELF3 WILD-TYPE                                                  2
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  ELF3 MUTATED                                                  0
  ELF3 WILD-TYPE                                               10
                vv
clus             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  ELF3 MUTATED                                                                        3
  ELF3 WILD-TYPE                                                                     21
D33V4, multiclass
                vv
clus             T1 T2 T3 T4
  ELF3 MUTATED    0  2  1  2
  ELF3 WILD-TYPE  4 44 40 13
D33V5, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  T1            0              4
  T2            2             44
  T3            1             40
  T4            2             13
                vv
clus             N0 N1 N2 N3
  ELF3 MUTATED    3  1  1  0
  ELF3 WILD-TYPE 32 38 18 12
D33V6, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  N0            3             32
  N1            1             38
  N2            1             18
  N3            0             12
                vv
clus             M0 M1 MX
  ELF3 MUTATED    5  0  0
  ELF3 WILD-TYPE 94 13  4
D33V7, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  M0            5             94
  M1            0             13
  MX            0              4
                vv
clus              I II III IV
  ELF3 MUTATED    1  1   2  1
  ELF3 WILD-TYPE 17 31  27 20
D33V8, multiclass
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  I              1             17
  II             1             31
  III            2             27
  IV             1             20
                vv
clus             R0 R1 R2 RX
  ELF3 MUTATED    4  0  0  1
  ELF3 WILD-TYPE 63  5 12 24
D33V9, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  R0            4             63
  R1            0              5
  R2            0             12
  RX            1             24
D33V10, continuous

Clustering(34) Variable = PARK2 MUTATION ANALYSIS
D34V1, survival
                 sevent
clus2              0  1
  PARK2 MUTATED    5  1
  PARK2 WILD-TYPE 66 13
  PARK2 MUTATED PARK2 WILD-TYPE 
              6              79 
  PARK2 MUTATED PARK2 WILD-TYPE 
              1              13 
$`PARK2 MUTATED`
TCGA-BR-6452 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-D7-6527 TCGA-F1-6177 
        0.95        15.95         1.02         8.05         4.14         6.54 

$`PARK2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 
       20.02         3.02        27.02        52.96        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         6.61         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6874 
        2.01 

  PARK2 MUTATED PARK2 WILD-TYPE 
           0.95            0.07 
  PARK2 MUTATED PARK2 WILD-TYPE 
          15.95           70.06 
  PARK2 MUTATED PARK2 WILD-TYPE 
           5.34            4.01 
[1] "0.9 - 15.9 (5.3)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
[1] "hr=" "1.4"
D34V2, continuous
D34V3, binary
                 cls
clus               0  1
  PARK2 MUTATED    3  6
  PARK2 WILD-TYPE 43 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      3    6
  PARK2 WILD-TYPE   43   64
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  FEMALE             3              43
  MALE               6              64
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  PARK2 MUTATED                                       0
  PARK2 WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  PARK2 MUTATED                                                        7
  PARK2 WILD-TYPE                                                     50
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  PARK2 MUTATED                                                   0
  PARK2 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  PARK2 MUTATED                                                    1
  PARK2 WILD-TYPE                                                  1
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  PARK2 MUTATED                                                  0
  PARK2 WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  PARK2 MUTATED                                                                        1
  PARK2 WILD-TYPE                                                                     23
D34V4, multiclass
                 vv
clus              T1 T2 T3 T4
  PARK2 MUTATED    1  4  2  0
  PARK2 WILD-TYPE  3 42 39 15
D34V5, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  T1             1               3
  T2             4              42
  T3             2              39
  T4             0              15
                 vv
clus              N0 N1 N2 N3
  PARK2 MUTATED    1  5  1  0
  PARK2 WILD-TYPE 34 34 18 12
D34V6, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  N0             1              34
  N1             5              34
  N2             1              18
  N3             0              12
                 vv
clus              M0 M1 MX
  PARK2 MUTATED    7  1  1
  PARK2 WILD-TYPE 92 12  3
D34V7, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  M0             7              92
  M1             1              12
  MX             1               3
                 vv
clus               I II III IV
  PARK2 MUTATED    1  4   0  1
  PARK2 WILD-TYPE 17 28  29 20
D34V8, multiclass
     clus
vv    PARK2 MUTATED PARK2 WILD-TYPE
  I               1              17
  II              4              28
  III             0              29
  IV              1              20
                 vv
clus              R0 R1 R2 RX
  PARK2 MUTATED    5  0  1  3
  PARK2 WILD-TYPE 62  5 11 22
D34V9, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  R0             5              62
  R1             0               5
  R2             1              11
  RX             3              22
D34V10, continuous

Clustering(35) Variable = LARP4B MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2               0  1
  LARP4B MUTATED    2  1
  LARP4B WILD-TYPE 69 13
  LARP4B MUTATED LARP4B WILD-TYPE 
               3               82 
  LARP4B MUTATED LARP4B WILD-TYPE 
               1               13 
$`LARP4B MUTATED`
TCGA-CG-5721 TCGA-CG-5733 TCGA-F1-6874 
        5.98        21.07         2.01 

$`LARP4B WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        2.93         4.27         0.62         6.54 

  LARP4B MUTATED LARP4B WILD-TYPE 
            2.01             0.07 
  LARP4B MUTATED LARP4B WILD-TYPE 
           21.07            70.06 
  LARP4B MUTATED LARP4B WILD-TYPE 
            5.98             4.01 
[1] "2.0 - 21.1 (6.0)" "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "LARP4B MUTATED" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE"   "LARP4B MUTATED" "LARP4B WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-F1-6874 
  "LARP4B MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "LARP4B MUTATED" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE"   "LARP4B MUTATED" "LARP4B WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-F1-6874 
  "LARP4B MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "LARP4B MUTATED" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE"   "LARP4B MUTATED" "LARP4B WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" "LARP4B WILD-TYPE" 
      TCGA-F1-6874 
  "LARP4B MUTATED" 
[1] "hr=" "1.9"
D35V2, continuous
D35V3, binary
                  cls
clus                0  1
  LARP4B MUTATED    3  2
  LARP4B WILD-TYPE 43 68
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LARP4B MUTATED      3    2
  LARP4B WILD-TYPE   43   68
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  FEMALE              3               43
  MALE                2               68
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  LARP4B MUTATED                                       0
  LARP4B WILD-TYPE                                    13
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  LARP4B MUTATED                                                        2
  LARP4B WILD-TYPE                                                     55
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  LARP4B MUTATED                                                   0
  LARP4B WILD-TYPE                                                 5
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  LARP4B MUTATED                                                    0
  LARP4B WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  LARP4B MUTATED                                                  0
  LARP4B WILD-TYPE                                               10
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  LARP4B MUTATED                                                                        3
  LARP4B WILD-TYPE                                                                     21
D35V4, multiclass
                  vv
clus               T1 T2 T3 T4
  LARP4B MUTATED    1  2  0  2
  LARP4B WILD-TYPE  3 44 41 13
D35V5, multiclass
    clus
vv   LARP4B MUTATED LARP4B WILD-TYPE
  T1              1                3
  T2              2               44
  T3              0               41
  T4              2               13
                  vv
clus               N0 N1 N2 N3
  LARP4B MUTATED    2  1  1  0
  LARP4B WILD-TYPE 33 38 18 12
D35V6, multiclass
    clus
vv   LARP4B MUTATED LARP4B WILD-TYPE
  N0              2               33
  N1              1               38
  N2              1               18
  N3              0               12
                  vv
clus               M0 M1 MX
  LARP4B MUTATED    5  0  0
  LARP4B WILD-TYPE 94 13  4
D35V7, multiclass
    clus
vv   LARP4B MUTATED LARP4B WILD-TYPE
  M0              5               94
  M1              0               13
  MX              0                4
                  vv
clus                I II III IV
  LARP4B MUTATED    1  0   2  1
  LARP4B WILD-TYPE 17 32  27 20
D35V8, multiclass
     clus
vv    LARP4B MUTATED LARP4B WILD-TYPE
  I                1               17
  II               0               32
  III              2               27
  IV               1               20
                  vv
clus               R0 R1 R2 RX
  LARP4B MUTATED    3  0  0  2
  LARP4B WILD-TYPE 64  5 12 23
D35V9, multiclass
    clus
vv   LARP4B MUTATED LARP4B WILD-TYPE
  R0              3               64
  R1              0                5
  R2              0               12
  RX              2               23
D35V10, continuous

Clustering(36) Variable = OR6K3 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  OR6K3 MUTATED    3  1
  OR6K3 WILD-TYPE 68 13
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              4              81 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              1              13 
$`OR6K3 MUTATED`
TCGA-BR-6452 TCGA-CG-4460 TCGA-CG-5721 TCGA-CG-5722 
        0.95        21.99         5.98         0.95 

$`OR6K3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        1.02         0.99        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  OR6K3 MUTATED OR6K3 WILD-TYPE 
           0.95            0.07 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
          21.99           70.06 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
          3.465           4.010 
[1] "0.9 - 22.0 (3.5)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR6K3 MUTATED"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-F1-6874 
"OR6K3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR6K3 MUTATED"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-F1-6874 
"OR6K3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR6K3 MUTATED"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-F1-6874 
"OR6K3 WILD-TYPE" 
[1] "hr=" "1.6"
D36V2, continuous
D36V3, binary
                 cls
clus               0  1
  OR6K3 MUTATED    4  2
  OR6K3 WILD-TYPE 42 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      4    2
  OR6K3 WILD-TYPE   42   68
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  FEMALE             4              42
  MALE               2              68
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  OR6K3 MUTATED                                       0
  OR6K3 WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  OR6K3 MUTATED                                                        2
  OR6K3 WILD-TYPE                                                     55
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  OR6K3 MUTATED                                                   0
  OR6K3 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  OR6K3 MUTATED                                                    0
  OR6K3 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  OR6K3 MUTATED                                                  0
  OR6K3 WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  OR6K3 MUTATED                                                                        4
  OR6K3 WILD-TYPE                                                                     20
D36V4, multiclass
                 vv
clus              T1 T2 T3 T4
  OR6K3 MUTATED    0  1  2  2
  OR6K3 WILD-TYPE  4 45 39 13
D36V5, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  T1             0               4
  T2             1              45
  T3             2              39
  T4             2              13
                 vv
clus              N0 N1 N2 N3
  OR6K3 MUTATED    2  2  1  0
  OR6K3 WILD-TYPE 33 37 18 12
D36V6, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  N0             2              33
  N1             2              37
  N2             1              18
  N3             0              12
                 vv
clus              M0 M1 MX
  OR6K3 MUTATED    4  2  0
  OR6K3 WILD-TYPE 95 11  4
D36V7, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  M0             4              95
  M1             2              11
  MX             0               4
                 vv
clus               I II III IV
  OR6K3 MUTATED    1  1   0  3
  OR6K3 WILD-TYPE 17 31  29 18
D36V8, multiclass
     clus
vv    OR6K3 MUTATED OR6K3 WILD-TYPE
  I               1              17
  II              1              31
  III             0              29
  IV              3              18
                 vv
clus              R0 R1 R2 RX
  OR6K3 MUTATED    3  0  2  1
  OR6K3 WILD-TYPE 64  5 10 24
D36V9, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  R0             3              64
  R1             0               5
  R2             2              10
  RX             1              24
D36V10, continuous

Clustering(37) Variable = TM7SF4 MUTATION ANALYSIS
D37V1, survival
                  sevent
clus2               0  1
  TM7SF4 MUTATED    5  1
  TM7SF4 WILD-TYPE 66 13
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               6               79 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               1               13 
$`TM7SF4 MUTATED`
TCGA-CD-5801 TCGA-CG-4472 TCGA-CG-5723 TCGA-CG-5734 TCGA-D7-6528 TCGA-F1-6874 
        0.49        12.00        70.06         7.99         1.68         2.01 

$`TM7SF4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.82         0.69         0.36         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 
        6.54 

  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
            0.49             0.07 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
           70.06            65.10 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
            5.00             4.01 
[1] "0.5 - 70.1 (5.0)" "0.1 - 65.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
                  cls
clus                0  1
  TM7SF4 MUTATED    2  5
  TM7SF4 WILD-TYPE 44 65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TM7SF4 MUTATED      2    5
  TM7SF4 WILD-TYPE   44   65
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  FEMALE              2               44
  MALE                5               65
                  vv
clus               STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  TM7SF4 MUTATED                                       0
  TM7SF4 WILD-TYPE                                    13
                  vv
clus               STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  TM7SF4 MUTATED                                                        3
  TM7SF4 WILD-TYPE                                                     54
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  TM7SF4 MUTATED                                                   0
  TM7SF4 WILD-TYPE                                                 5
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  TM7SF4 MUTATED                                                    0
  TM7SF4 WILD-TYPE                                                  2
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  TM7SF4 MUTATED                                                  1
  TM7SF4 WILD-TYPE                                                9
                  vv
clus               STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  TM7SF4 MUTATED                                                                        2
  TM7SF4 WILD-TYPE                                                                     22
D37V4, multiclass
                  vv
clus               T1 T2 T3 T4
  TM7SF4 MUTATED    0  3  2  2
  TM7SF4 WILD-TYPE  4 43 39 13
D37V5, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  T1              0                4
  T2              3               43
  T3              2               39
  T4              2               13
                  vv
clus               N0 N1 N2 N3
  TM7SF4 MUTATED    2  4  1  0
  TM7SF4 WILD-TYPE 33 35 18 12
D37V6, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  N0              2               33
  N1              4               35
  N2              1               18
  N3              0               12
                  vv
clus               M0 M1 MX
  TM7SF4 MUTATED    7  0  0
  TM7SF4 WILD-TYPE 92 13  4
D37V7, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  M0              7               92
  M1              0               13
  MX              0                4
                  vv
clus                I II III IV
  TM7SF4 MUTATED    2  1   2  2
  TM7SF4 WILD-TYPE 16 31  27 19
D37V8, multiclass
     clus
vv    TM7SF4 MUTATED TM7SF4 WILD-TYPE
  I                2               16
  II               1               31
  III              2               27
  IV               2               19
                  vv
clus               R0 R1 R2 RX
  TM7SF4 MUTATED    5  0  0  1
  TM7SF4 WILD-TYPE 62  5 12 24
D37V9, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  R0              5               62
  R1              0                5
  R2              0               12
  RX              1               24
D37V10, continuous

Clustering(38) Variable = UPF3A MUTATION ANALYSIS
D38V1, survival
                 sevent
clus2              0  1
  UPF3A MUTATED    3  0
  UPF3A WILD-TYPE 68 14
  UPF3A MUTATED UPF3A WILD-TYPE 
              3              82 
  UPF3A MUTATED UPF3A WILD-TYPE 
              0              14 
$`UPF3A MUTATED`
TCGA-CG-5721 TCGA-D7-6822 TCGA-F1-6177 
        5.98         4.27         6.54 

$`UPF3A WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6874 
        4.04         2.93         0.62         2.01 

  UPF3A MUTATED UPF3A WILD-TYPE 
           4.27            0.07 
  UPF3A MUTATED UPF3A WILD-TYPE 
           6.54           70.06 
  UPF3A MUTATED UPF3A WILD-TYPE 
           5.98            3.83 
[1] "4.3 - 6.5 (6.0)"  "0.1 - 70.1 (3.8)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "UPF3A MUTATED" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"UPF3A WILD-TYPE"   "UPF3A MUTATED" "UPF3A WILD-TYPE"   "UPF3A MUTATED" 
     TCGA-F1-6874 
"UPF3A WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "UPF3A MUTATED" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"UPF3A WILD-TYPE"   "UPF3A MUTATED" "UPF3A WILD-TYPE"   "UPF3A MUTATED" 
     TCGA-F1-6874 
"UPF3A WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "UPF3A MUTATED" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"UPF3A WILD-TYPE"   "UPF3A MUTATED" "UPF3A WILD-TYPE"   "UPF3A MUTATED" 
     TCGA-F1-6874 
"UPF3A WILD-TYPE" 
[1] "hr="     "9700000"
D38V2, continuous
D38V3, binary
                 cls
clus               0  1
  UPF3A MUTATED    3  3
  UPF3A WILD-TYPE 43 67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UPF3A MUTATED      3    3
  UPF3A WILD-TYPE   43   67
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  FEMALE             3              43
  MALE               3              67
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  UPF3A MUTATED                                       0
  UPF3A WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  UPF3A MUTATED                                                        4
  UPF3A WILD-TYPE                                                     53
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  UPF3A MUTATED                                                   0
  UPF3A WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  UPF3A MUTATED                                                    0
  UPF3A WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  UPF3A MUTATED                                                  1
  UPF3A WILD-TYPE                                                9
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  UPF3A MUTATED                                                                        1
  UPF3A WILD-TYPE                                                                     23
D38V4, multiclass
                 vv
clus              T1 T2 T3 T4
  UPF3A MUTATED    2  2  0  2
  UPF3A WILD-TYPE  2 44 41 13
D38V5, multiclass
    clus
vv   UPF3A MUTATED UPF3A WILD-TYPE
  T1             2               2
  T2             2              44
  T3             0              41
  T4             2              13
                 vv
clus              N0 N1 N2 N3
  UPF3A MUTATED    2  3  0  0
  UPF3A WILD-TYPE 33 36 19 12
D38V6, multiclass
    clus
vv   UPF3A MUTATED UPF3A WILD-TYPE
  N0             2              33
  N1             3              36
  N2             0              19
  N3             0              12
                 vv
clus              M0 M1 MX
  UPF3A MUTATED    5  0  1
  UPF3A WILD-TYPE 94 13  3
D38V7, multiclass
    clus
vv   UPF3A MUTATED UPF3A WILD-TYPE
  M0             5              94
  M1             0              13
  MX             1               3
                 vv
clus               I II III IV
  UPF3A MUTATED    2  0   2  1
  UPF3A WILD-TYPE 16 32  27 20
D38V8, multiclass
     clus
vv    UPF3A MUTATED UPF3A WILD-TYPE
  I               2              16
  II              0              32
  III             2              27
  IV              1              20
                 vv
clus              R0 R1 R2 RX
  UPF3A MUTATED    3  0  0  3
  UPF3A WILD-TYPE 64  5 12 22
D38V9, multiclass
    clus
vv   UPF3A MUTATED UPF3A WILD-TYPE
  R0             3              64
  R1             0               5
  R2             0              12
  RX             3              22
D38V10, continuous

Clustering(39) Variable = C7ORF63 MUTATION ANALYSIS
D39V1, survival
                   sevent
clus2                0  1
  C7ORF63 MUTATED    2  1
  C7ORF63 WILD-TYPE 69 13
  C7ORF63 MUTATED C7ORF63 WILD-TYPE 
                3                82 
  C7ORF63 MUTATED C7ORF63 WILD-TYPE 
                1                13 
$`C7ORF63 MUTATED`
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4474 
       12.03         8.98         1.02 

$`C7ORF63 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 
       47.05        19.07        21.99         1.02        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
       12.00         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  C7ORF63 MUTATED C7ORF63 WILD-TYPE 
             1.02              0.07 
  C7ORF63 MUTATED C7ORF63 WILD-TYPE 
            12.03             70.06 
  C7ORF63 MUTATED C7ORF63 WILD-TYPE 
             8.98              4.01 
[1] "1.0 - 12.0 (9.0)" "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-F1-6874 
"C7ORF63 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-F1-6874 
"C7ORF63 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"C7ORF63 WILD-TYPE"   "C7ORF63 MUTATED" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-F1-6874 
"C7ORF63 WILD-TYPE" 
[1] "hr=" "2.1"
D39V2, continuous
D39V3, binary
                   cls
clus                 0  1
  C7ORF63 MUTATED    4  1
  C7ORF63 WILD-TYPE 42 69
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C7ORF63 MUTATED      4    1
  C7ORF63 WILD-TYPE   42   69
        clus
vv       C7ORF63 MUTATED C7ORF63 WILD-TYPE
  FEMALE               4                42
  MALE                 1                69
                   vv
clus                STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  C7ORF63 MUTATED                                       1
  C7ORF63 WILD-TYPE                                    12
                   vv
clus                STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  C7ORF63 MUTATED                                                        2
  C7ORF63 WILD-TYPE                                                     55
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  C7ORF63 MUTATED                                                   1
  C7ORF63 WILD-TYPE                                                 4
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  C7ORF63 MUTATED                                                    0
  C7ORF63 WILD-TYPE                                                  2
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  C7ORF63 MUTATED                                                  0
  C7ORF63 WILD-TYPE                                               10
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  C7ORF63 MUTATED                                                                        0
  C7ORF63 WILD-TYPE                                                                     24
D39V4, multiclass
                   vv
clus                T1 T2 T3 T4
  C7ORF63 MUTATED    0  1  0  3
  C7ORF63 WILD-TYPE  4 45 41 12
D39V5, multiclass
    clus
vv   C7ORF63 MUTATED C7ORF63 WILD-TYPE
  T1               0                 4
  T2               1                45
  T3               0                41
  T4               3                12
                   vv
clus                N0 N1 N2 N3
  C7ORF63 MUTATED    1  1  1  1
  C7ORF63 WILD-TYPE 34 38 18 11
D39V6, multiclass
    clus
vv   C7ORF63 MUTATED C7ORF63 WILD-TYPE
  N0               1                34
  N1               1                38
  N2               1                18
  N3               1                11
                   vv
clus                M0 M1 MX
  C7ORF63 MUTATED    3  2  0
  C7ORF63 WILD-TYPE 96 11  4
D39V7, multiclass
    clus
vv   C7ORF63 MUTATED C7ORF63 WILD-TYPE
  M0               3                96
  M1               2                11
  MX               0                 4
                   vv
clus                 I II III IV
  C7ORF63 MUTATED    0  1   1  2
  C7ORF63 WILD-TYPE 18 31  28 19
D39V8, multiclass
     clus
vv    C7ORF63 MUTATED C7ORF63 WILD-TYPE
  I                 0                18
  II                1                31
  III               1                28
  IV                2                19
                   vv
clus                R0 R1 R2 RX
  C7ORF63 MUTATED    1  0  2  2
  C7ORF63 WILD-TYPE 66  5 10 23
D39V9, multiclass
    clus
vv   C7ORF63 MUTATED C7ORF63 WILD-TYPE
  R0               1                66
  R1               0                 5
  R2               2                10
  RX               2                23
D39V10, continuous
[1] "Remove cluster labels:" "C7ORF63 MUTATED"       
clus
  C7ORF63 MUTATED C7ORF63 WILD-TYPE 
                1                70 
       TCGA-B7-5816        TCGA-BR-4183        TCGA-BR-4184        TCGA-BR-4188 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-4191        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4362 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-4367        TCGA-BR-4368        TCGA-BR-6452        TCGA-BR-6453 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-BR-6852        TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5724        TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874 
"C7ORF63 WILD-TYPE" "C7ORF63 WILD-TYPE" 

Clustering(40) Variable = KDM4B MUTATION ANALYSIS
D40V1, survival
                 sevent
clus2              0  1
  KDM4B MUTATED    3  2
  KDM4B WILD-TYPE 68 12
  KDM4B MUTATED KDM4B WILD-TYPE 
              5              80 
  KDM4B MUTATED KDM4B WILD-TYPE 
              2              12 
$`KDM4B MUTATED`
TCGA-BR-6452 TCGA-CG-4460 TCGA-CG-5721 TCGA-CG-5728 TCGA-CG-5733 
        0.95        21.99         5.98        65.10        21.07 

$`KDM4B WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       28.96        31.04         4.01        55.04         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 
        6.54         2.01 

  KDM4B MUTATED KDM4B WILD-TYPE 
           0.95            0.07 
  KDM4B MUTATED KDM4B WILD-TYPE 
          65.10           70.06 
  KDM4B MUTATED KDM4B WILD-TYPE 
          21.07            3.83 
[1] "0.9 - 65.1 (21.1)" "0.1 - 70.1 (3.8)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "KDM4B MUTATED" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-F1-6874 
"KDM4B WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "KDM4B MUTATED" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-F1-6874 
"KDM4B WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "KDM4B MUTATED" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-F1-6874 
"KDM4B WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
D40V3, binary
                 cls
clus               0  1
  KDM4B MUTATED    8  2
  KDM4B WILD-TYPE 38 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM4B MUTATED      8    2
  KDM4B WILD-TYPE   38   68
        clus
vv       KDM4B MUTATED KDM4B WILD-TYPE
  FEMALE             8              38
  MALE               2              68
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  KDM4B MUTATED                                       0
  KDM4B WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  KDM4B MUTATED                                                        6
  KDM4B WILD-TYPE                                                     51
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  KDM4B MUTATED                                                   0
  KDM4B WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  KDM4B MUTATED                                                    0
  KDM4B WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  KDM4B MUTATED                                                  0
  KDM4B WILD-TYPE                                               10
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  KDM4B MUTATED                                                                        4
  KDM4B WILD-TYPE                                                                     20
D40V4, multiclass
                 vv
clus              T1 T2 T3 T4
  KDM4B MUTATED    1  3  2  3
  KDM4B WILD-TYPE  3 43 39 12
D40V5, multiclass
    clus
vv   KDM4B MUTATED KDM4B WILD-TYPE
  T1             1               3
  T2             3              43
  T3             2              39
  T4             3              12
                 vv
clus              N0 N1 N2 N3
  KDM4B MUTATED    2  3  2  0
  KDM4B WILD-TYPE 33 36 17 12
D40V6, multiclass
    clus
vv   KDM4B MUTATED KDM4B WILD-TYPE
  N0             2              33
  N1             3              36
  N2             2              17
  N3             0              12
                 vv
clus              M0 M1 MX
  KDM4B MUTATED    8  1  1
  KDM4B WILD-TYPE 91 12  3
D40V7, multiclass
    clus
vv   KDM4B MUTATED KDM4B WILD-TYPE
  M0             8              91
  M1             1              12
  MX             1               3
                 vv
clus               I II III IV
  KDM4B MUTATED    1  1   2  3
  KDM4B WILD-TYPE 17 31  27 18
D40V8, multiclass
     clus
vv    KDM4B MUTATED KDM4B WILD-TYPE
  I               1              17
  II              1              31
  III             2              27
  IV              3              18
                 vv
clus              R0 R1 R2 RX
  KDM4B MUTATED    4  0  1  5
  KDM4B WILD-TYPE 63  5 11 20
D40V9, multiclass
    clus
vv   KDM4B MUTATED KDM4B WILD-TYPE
  R0             4              63
  R1             0               5
  R2             1              11
  RX             5              20
D40V10, continuous

Clustering(41) Variable = KIAA0748 MUTATION ANALYSIS
D41V1, survival
                    sevent
clus2                 0  1
  KIAA0748 MUTATED    4  0
  KIAA0748 WILD-TYPE 67 14
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 4                 81 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 0                 14 
$`KIAA0748 MUTATED`
TCGA-BR-6458 TCGA-BR-6852 TCGA-CG-4437 TCGA-CG-5732 
        1.35         0.26         8.05        55.04 

$`KIAA0748 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 
        3.02        27.02        15.95         1.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
              0.26               0.07 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
             55.04              70.06 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
              4.70               4.01 
[1] "0.3 - 55.0 (4.7)" "0.1 - 70.1 (4.0)"
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D41V2, continuous
D41V3, binary
                    cls
clus                  0  1
  KIAA0748 MUTATED    3  4
  KIAA0748 WILD-TYPE 43 66
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0748 MUTATED      3    4
  KIAA0748 WILD-TYPE   43   66
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  FEMALE                3                 43
  MALE                  4                 66
                    vv
clus                 STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  KIAA0748 MUTATED                                       0
  KIAA0748 WILD-TYPE                                    13
                    vv
clus                 STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  KIAA0748 MUTATED                                                        5
  KIAA0748 WILD-TYPE                                                     52
                    vv
clus                 STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  KIAA0748 MUTATED                                                   0
  KIAA0748 WILD-TYPE                                                 5
                    vv
clus                 STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  KIAA0748 MUTATED                                                    0
  KIAA0748 WILD-TYPE                                                  2
                    vv
clus                 STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  KIAA0748 MUTATED                                                  0
  KIAA0748 WILD-TYPE                                               10
                    vv
clus                 STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  KIAA0748 MUTATED                                                                        2
  KIAA0748 WILD-TYPE                                                                     22
D41V4, multiclass
                    vv
clus                 T1 T2 T3 T4
  KIAA0748 MUTATED    0  4  2  0
  KIAA0748 WILD-TYPE  4 42 39 15
D41V5, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  T1                0                  4
  T2                4                 42
  T3                2                 39
  T4                0                 15
                    vv
clus                 N0 N1 N2 N3
  KIAA0748 MUTATED    2  4  0  1
  KIAA0748 WILD-TYPE 33 35 19 11
D41V6, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  N0                2                 33
  N1                4                 35
  N2                0                 19
  N3                1                 11
                    vv
clus                 M0 M1 MX
  KIAA0748 MUTATED    7  0  0
  KIAA0748 WILD-TYPE 92 13  4
D41V7, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  M0                7                 92
  M1                0                 13
  MX                0                  4
                    vv
clus                  I II III IV
  KIAA0748 MUTATED    1  4   0  1
  KIAA0748 WILD-TYPE 17 28  29 20
D41V8, multiclass
     clus
vv    KIAA0748 MUTATED KIAA0748 WILD-TYPE
  I                  1                 17
  II                 4                 28
  III                0                 29
  IV                 1                 20
                    vv
clus                 R0 R1 R2 RX
  KIAA0748 MUTATED    5  0  0  2
  KIAA0748 WILD-TYPE 62  5 12 23
D41V9, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  R0                5                 62
  R1                0                  5
  R2                0                 12
  RX                2                 23
D41V10, continuous

Clustering(42) Variable = OR8B4 MUTATION ANALYSIS
D42V1, survival
                 sevent
clus2              0  1
  OR8B4 MUTATED    2  1
  OR8B4 WILD-TYPE 69 13
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              3              82 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              1              13 
$`OR8B4 MUTATED`
TCGA-CG-5733 TCGA-D7-6525 TCGA-D7-6528 
       21.07         5.95         1.68 

$`OR8B4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        4.01        55.04         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        6.61         4.14         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  OR8B4 MUTATED OR8B4 WILD-TYPE 
           1.68            0.07 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
          21.07           70.06 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
           5.95            4.01 
[1] "1.7 - 21.1 (6.0)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-F1-6874 
"OR8B4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-F1-6874 
"OR8B4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-F1-6874 
"OR8B4 WILD-TYPE" 
[1] "hr=" "1.9"
D42V2, continuous
D42V3, binary
                 cls
clus               0  1
  OR8B4 MUTATED    2  1
  OR8B4 WILD-TYPE 44 69
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      2    1
  OR8B4 WILD-TYPE   44   69
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  FEMALE             2              44
  MALE               1              69
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  OR8B4 MUTATED                                       1
  OR8B4 WILD-TYPE                                    12
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  OR8B4 MUTATED                                                        0
  OR8B4 WILD-TYPE                                                     57
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  OR8B4 MUTATED                                                   0
  OR8B4 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  OR8B4 MUTATED                                                    0
  OR8B4 WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  OR8B4 MUTATED                                                  1
  OR8B4 WILD-TYPE                                                9
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  OR8B4 MUTATED                                                                        1
  OR8B4 WILD-TYPE                                                                     23
D42V4, multiclass
                 vv
clus              T1 T2 T3 T4
  OR8B4 MUTATED    0  3  0  0
  OR8B4 WILD-TYPE  4 43 41 15
D42V5, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  T1             0               4
  T2             3              43
  T3             0              41
  T4             0              15
                 vv
clus              N0 N1 N2 N3
  OR8B4 MUTATED    1  0  2  0
  OR8B4 WILD-TYPE 34 39 17 12
D42V6, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  N0             1              34
  N1             0              39
  N2             2              17
  N3             0              12
                 vv
clus              M0 M1 MX
  OR8B4 MUTATED    3  0  0
  OR8B4 WILD-TYPE 96 13  4
D42V7, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  M0             3              96
  M1             0              13
  MX             0               4
                 vv
clus               I II III IV
  OR8B4 MUTATED    1  0   2  0
  OR8B4 WILD-TYPE 17 32  27 21
D42V8, multiclass
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  I               1              17
  II              0              32
  III             2              27
  IV              0              21
                 vv
clus              R0 R1 R2 RX
  OR8B4 MUTATED    3  0  0  0
  OR8B4 WILD-TYPE 64  5 12 25
D42V9, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  R0             3              64
  R1             0               5
  R2             0              12
  RX             0              25
D42V10, continuous

Clustering(43) Variable = POM121L12 MUTATION ANALYSIS
D43V1, survival
                     sevent
clus2                  0  1
  POM121L12 MUTATED    4  1
  POM121L12 WILD-TYPE 67 13
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                  5                  80 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                  1                  13 
$`POM121L12 MUTATED`
TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4465 TCGA-CG-5721 TCGA-CG-5723 
        0.82         0.49         8.98         5.98        70.06 

$`POM121L12 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.69         0.36         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.99         0.95        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 
        6.54         2.01 

  POM121L12 MUTATED POM121L12 WILD-TYPE 
               0.49                0.07 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
              70.06               65.10 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
               5.98                4.01 
[1] "0.5 - 70.1 (6.0)" "0.1 - 65.1 (4.0)"
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE"   "POM121L12 MUTATED" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"POM121L12 WILD-TYPE"   "POM121L12 MUTATED" "POM121L12 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-F1-6874 
"POM121L12 WILD-TYPE" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE"   "POM121L12 MUTATED" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"POM121L12 WILD-TYPE"   "POM121L12 MUTATED" "POM121L12 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-F1-6874 
"POM121L12 WILD-TYPE" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE"   "POM121L12 MUTATED" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"POM121L12 WILD-TYPE"   "POM121L12 MUTATED" "POM121L12 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-F1-6874 
"POM121L12 WILD-TYPE" 
[1] "hr=" "1.1"
D43V2, continuous
D43V3, binary
                     cls
clus                   0  1
  POM121L12 MUTATED    3  4
  POM121L12 WILD-TYPE 43 66
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  POM121L12 MUTATED      3    4
  POM121L12 WILD-TYPE   43   66
        clus
vv       POM121L12 MUTATED POM121L12 WILD-TYPE
  FEMALE                 3                  43
  MALE                   4                  66
                     vv
clus                  STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  POM121L12 MUTATED                                       0
  POM121L12 WILD-TYPE                                    13
                     vv
clus                  STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  POM121L12 MUTATED                                                        4
  POM121L12 WILD-TYPE                                                     53
                     vv
clus                  STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  POM121L12 MUTATED                                                   1
  POM121L12 WILD-TYPE                                                 4
                     vv
clus                  STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  POM121L12 MUTATED                                                    0
  POM121L12 WILD-TYPE                                                  2
                     vv
clus                  STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  POM121L12 MUTATED                                                  0
  POM121L12 WILD-TYPE                                               10
                     vv
clus                  STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  POM121L12 MUTATED                                                                        1
  POM121L12 WILD-TYPE                                                                     23
D43V4, multiclass
                     vv
clus                  T1 T2 T3 T4
  POM121L12 MUTATED    0  1  3  3
  POM121L12 WILD-TYPE  4 45 38 12
D43V5, multiclass
    clus
vv   POM121L12 MUTATED POM121L12 WILD-TYPE
  T1                 0                   4
  T2                 1                  45
  T3                 3                  38
  T4                 3                  12
                     vv
clus                  N0 N1 N2 N3
  POM121L12 MUTATED    1  3  1  1
  POM121L12 WILD-TYPE 34 36 18 11
D43V6, multiclass
    clus
vv   POM121L12 MUTATED POM121L12 WILD-TYPE
  N0                 1                  34
  N1                 3                  36
  N2                 1                  18
  N3                 1                  11
                     vv
clus                  M0 M1 MX
  POM121L12 MUTATED    5  1  1
  POM121L12 WILD-TYPE 94 12  3
D43V7, multiclass
    clus
vv   POM121L12 MUTATED POM121L12 WILD-TYPE
  M0                 5                  94
  M1                 1                  12
  MX                 1                   3
                     vv
clus                   I II III IV
  POM121L12 MUTATED    0  2   1  3
  POM121L12 WILD-TYPE 18 30  28 18
D43V8, multiclass
     clus
vv    POM121L12 MUTATED POM121L12 WILD-TYPE
  I                   0                  18
  II                  2                  30
  III                 1                  28
  IV                  3                  18
                     vv
clus                  R0 R1 R2 RX
  POM121L12 MUTATED    2  0  1  2
  POM121L12 WILD-TYPE 65  5 11 23
D43V9, multiclass
    clus
vv   POM121L12 MUTATED POM121L12 WILD-TYPE
  R0                 2                  65
  R1                 0                   5
  R2                 1                  11
  RX                 2                  23
D43V10, continuous

Clustering(44) Variable = RASA1 MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2              0  1
  RASA1 MUTATED    4  3
  RASA1 WILD-TYPE 67 11
  RASA1 MUTATED RASA1 WILD-TYPE 
              7              78 
  RASA1 MUTATED RASA1 WILD-TYPE 
              3              11 
$`RASA1 MUTATED`
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4460 TCGA-CG-5726 TCGA-D7-6527 
        3.02        15.95         1.02        21.99        28.96         4.14 
TCGA-D7-6815 
        3.65 

$`RASA1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        0.39        20.02        27.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 
        5.98         0.95        70.06        12.03        15.02        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 
        6.90         0.69         5.95         6.61         1.68         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  RASA1 MUTATED RASA1 WILD-TYPE 
           1.02            0.07 
  RASA1 MUTATED RASA1 WILD-TYPE 
          28.96           70.06 
  RASA1 MUTATED RASA1 WILD-TYPE 
           4.14            4.01 
[1] "1.0 - 29.0 (4.1)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "RASA1 MUTATED"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-F1-6874 
"RASA1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "RASA1 MUTATED"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-F1-6874 
"RASA1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "RASA1 MUTATED"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-F1-6874 
"RASA1 WILD-TYPE" 
[1] "hr=" "1.9"
D44V2, continuous
D44V3, binary
                 cls
clus               0  1
  RASA1 MUTATED    4  5
  RASA1 WILD-TYPE 42 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RASA1 MUTATED      4    5
  RASA1 WILD-TYPE   42   65
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  FEMALE             4              42
  MALE               5              65
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  RASA1 MUTATED                                       0
  RASA1 WILD-TYPE                                    13
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  RASA1 MUTATED                                                        4
  RASA1 WILD-TYPE                                                     53
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  RASA1 MUTATED                                                   0
  RASA1 WILD-TYPE                                                 5
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  RASA1 MUTATED                                                    1
  RASA1 WILD-TYPE                                                  1
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  RASA1 MUTATED                                                  1
  RASA1 WILD-TYPE                                                9
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  RASA1 MUTATED                                                                        3
  RASA1 WILD-TYPE                                                                     21
D44V4, multiclass
                 vv
clus              T1 T2 T3 T4
  RASA1 MUTATED    2  4  1  2
  RASA1 WILD-TYPE  2 42 40 13
D44V5, multiclass
    clus
vv   RASA1 MUTATED RASA1 WILD-TYPE
  T1             2               2
  T2             4              42
  T3             1              40
  T4             2              13
                 vv
clus              N0 N1 N2 N3
  RASA1 MUTATED    2  4  2  0
  RASA1 WILD-TYPE 33 35 17 12
D44V6, multiclass
    clus
vv   RASA1 MUTATED RASA1 WILD-TYPE
  N0             2              33
  N1             4              35
  N2             2              17
  N3             0              12
                 vv
clus              M0 M1 MX
  RASA1 MUTATED    6  3  0
  RASA1 WILD-TYPE 93 10  4
D44V7, multiclass
    clus
vv   RASA1 MUTATED RASA1 WILD-TYPE
  M0             6              93
  M1             3              10
  MX             0               4
                 vv
clus               I II III IV
  RASA1 MUTATED    2  2   1  3
  RASA1 WILD-TYPE 16 30  28 18
D44V8, multiclass
     clus
vv    RASA1 MUTATED RASA1 WILD-TYPE
  I               2              16
  II              2              30
  III             1              28
  IV              3              18
                 vv
clus              R0 R1 R2 RX
  RASA1 MUTATED    5  0  3  1
  RASA1 WILD-TYPE 62  5  9 24
D44V9, multiclass
    clus
vv   RASA1 MUTATED RASA1 WILD-TYPE
  R0             5              62
  R1             0               5
  R2             3               9
  RX             1              24
D44V10, continuous

Clustering(45) Variable = SLITRK6 MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                0  1
  SLITRK6 MUTATED    6  0
  SLITRK6 WILD-TYPE 65 14
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
                6                79 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
                0                14 
$`SLITRK6 MUTATED`
TCGA-CG-4437 TCGA-CG-4466 TCGA-CG-5721 TCGA-CG-5727 TCGA-D7-5578 TCGA-D7-6524 
        8.05        18.94         5.98        31.04         3.58         0.69 

$`SLITRK6 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       52.96        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        8.65         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
             0.69              0.07 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
            31.04             70.06 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
            7.015             4.010 
[1] "0.7 - 31.0 (7.0)" "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-F1-6874 
"SLITRK6 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-F1-6874 
"SLITRK6 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-F1-6874 
"SLITRK6 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D45V2, continuous
D45V3, binary
                   cls
clus                 0  1
  SLITRK6 MUTATED    3  7
  SLITRK6 WILD-TYPE 43 63
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK6 MUTATED      3    7
  SLITRK6 WILD-TYPE   43   63
        clus
vv       SLITRK6 MUTATED SLITRK6 WILD-TYPE
  FEMALE               3                43
  MALE                 7                63
                   vv
clus                STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  SLITRK6 MUTATED                                       1
  SLITRK6 WILD-TYPE                                    12
                   vv
clus                STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  SLITRK6 MUTATED                                                        4
  SLITRK6 WILD-TYPE                                                     53
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  SLITRK6 MUTATED                                                   0
  SLITRK6 WILD-TYPE                                                 5
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  SLITRK6 MUTATED                                                    0
  SLITRK6 WILD-TYPE                                                  2
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  SLITRK6 MUTATED                                                  1
  SLITRK6 WILD-TYPE                                                9
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  SLITRK6 MUTATED                                                                        4
  SLITRK6 WILD-TYPE                                                                     20
D45V4, multiclass
                   vv
clus                T1 T2 T3 T4
  SLITRK6 MUTATED    0  5  3  1
  SLITRK6 WILD-TYPE  4 41 38 14
D45V5, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  T1               0                 4
  T2               5                41
  T3               3                38
  T4               1                14
                   vv
clus                N0 N1 N2 N3
  SLITRK6 MUTATED    2  5  1  0
  SLITRK6 WILD-TYPE 33 34 18 12
D45V6, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  N0               2                33
  N1               5                34
  N2               1                18
  N3               0                12
                   vv
clus                M0 M1 MX
  SLITRK6 MUTATED    9  0  1
  SLITRK6 WILD-TYPE 90 13  3
D45V7, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  M0               9                90
  M1               0                13
  MX               1                 3
                   vv
clus                 I II III IV
  SLITRK6 MUTATED    1  5   1  1
  SLITRK6 WILD-TYPE 17 27  28 20
D45V8, multiclass
     clus
vv    SLITRK6 MUTATED SLITRK6 WILD-TYPE
  I                 1                17
  II                5                27
  III               1                28
  IV                1                20
                   vv
clus                R0 R1 R2 RX
  SLITRK6 MUTATED    6  1  0  3
  SLITRK6 WILD-TYPE 61  4 12 22
D45V9, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  R0               6                61
  R1               1                 4
  R2               0                12
  RX               3                22
D45V10, continuous

Clustering(46) Variable = TP53TG5 MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                0  1
  TP53TG5 MUTATED    2  2
  TP53TG5 WILD-TYPE 69 12
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                4                81 
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                2                12 
$`TP53TG5 MUTATED`
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4472 TCGA-CG-5733 
       14.01        29.98        12.00        21.07 

$`TP53TG5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 
       52.96         8.05        54.05         4.01        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
            12.00              0.07 
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
            29.98             70.06 
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
            17.54              3.65 
[1] "12.0 - 30.0 (17.5)" "0.1 - 70.1 (3.6)"  
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED"   "TP53TG5 MUTATED" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
  "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-F1-6874 
"TP53TG5 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED"   "TP53TG5 MUTATED" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
  "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-F1-6874 
"TP53TG5 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED"   "TP53TG5 MUTATED" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
  "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-F1-6874 
"TP53TG5 WILD-TYPE" 
[1] "hr=" "1.3"
D46V2, continuous
D46V3, binary
                   cls
clus                 0  1
  TP53TG5 MUTATED    1  3
  TP53TG5 WILD-TYPE 45 67
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TP53TG5 MUTATED      1    3
  TP53TG5 WILD-TYPE   45   67
        clus
vv       TP53TG5 MUTATED TP53TG5 WILD-TYPE
  FEMALE               1                45
  MALE                 3                67
                   vv
clus                STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  TP53TG5 MUTATED                                       0
  TP53TG5 WILD-TYPE                                    13
                   vv
clus                STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  TP53TG5 MUTATED                                                        0
  TP53TG5 WILD-TYPE                                                     57
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  TP53TG5 MUTATED                                                   0
  TP53TG5 WILD-TYPE                                                 5
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  TP53TG5 MUTATED                                                    0
  TP53TG5 WILD-TYPE                                                  2
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  TP53TG5 MUTATED                                                  0
  TP53TG5 WILD-TYPE                                               10
                   vv
clus                STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  TP53TG5 MUTATED                                                                        3
  TP53TG5 WILD-TYPE                                                                     21
D46V4, multiclass
                   vv
clus                T1 T2 T3 T4
  TP53TG5 MUTATED    1  2  0  1
  TP53TG5 WILD-TYPE  3 44 41 14
D46V5, multiclass
    clus
vv   TP53TG5 MUTATED TP53TG5 WILD-TYPE
  T1               1                 3
  T2               2                44
  T3               0                41
  T4               1                14
                   vv
clus                N0 N1 N2 N3
  TP53TG5 MUTATED    1  1  2  0
  TP53TG5 WILD-TYPE 34 38 17 12
D46V6, multiclass
    clus
vv   TP53TG5 MUTATED TP53TG5 WILD-TYPE
  N0               1                34
  N1               1                38
  N2               2                17
  N3               0                12
                   vv
clus                M0 M1 MX
  TP53TG5 MUTATED    4  0  0
  TP53TG5 WILD-TYPE 95 13  4
D46V7, multiclass
    clus
vv   TP53TG5 MUTATED TP53TG5 WILD-TYPE
  M0               4                95
  M1               0                13
  MX               0                 4
                   vv
clus                 I II III IV
  TP53TG5 MUTATED    1  0   2  1
  TP53TG5 WILD-TYPE 17 32  27 20
D46V8, multiclass
     clus
vv    TP53TG5 MUTATED TP53TG5 WILD-TYPE
  I                 1                17
  II                0                32
  III               2                27
  IV                1                20
                   vv
clus                R0 R1 R2 RX
  TP53TG5 MUTATED    4  0  0  0
  TP53TG5 WILD-TYPE 63  5 12 25
D46V9, multiclass
    clus
vv   TP53TG5 MUTATED TP53TG5 WILD-TYPE
  R0               4                63
  R1               0                 5
  R2               0                12
  RX               0                25
D46V10, continuous
[1] "Remove cluster labels:" "TP53TG5 MUTATED"       
clus
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                1                70 
       TCGA-B7-5816        TCGA-BR-4183        TCGA-BR-4184        TCGA-BR-4188 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-4191        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4361 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-4362        TCGA-BR-4367        TCGA-BR-4368        TCGA-BR-6452 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CG-5717        TCGA-CG-5718 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725        TCGA-CG-5726 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 

Clustering(47) Variable = LHCGR MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2              0  1
  LHCGR MUTATED    3  1
  LHCGR WILD-TYPE 68 13
  LHCGR MUTATED LHCGR WILD-TYPE 
              4              81 
  LHCGR MUTATED LHCGR WILD-TYPE 
              1              13 
$`LHCGR MUTATED`
TCGA-B7-5816 TCGA-CG-5726 TCGA-D7-5579 TCGA-D7-6817 
        5.62        28.96         4.54         4.70 

$`LHCGR WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 
       21.07         7.99         8.65         3.58         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        4.14         1.68         3.65         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  LHCGR MUTATED LHCGR WILD-TYPE 
           4.54            0.07 
  LHCGR MUTATED LHCGR WILD-TYPE 
          28.96           70.06 
  LHCGR MUTATED LHCGR WILD-TYPE 
           5.16            3.65 
[1] "4.5 - 29.0 (5.2)" "0.1 - 70.1 (3.6)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-F1-6874 
"LHCGR WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-F1-6874 
"LHCGR WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-F1-6874 
"LHCGR WILD-TYPE" 
[1] "hr=" "1.2"
D47V2, continuous
D47V3, binary
                 cls
clus               0  1
  LHCGR MUTATED    3  4
  LHCGR WILD-TYPE 43 66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LHCGR MUTATED      3    4
  LHCGR WILD-TYPE   43   66
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  FEMALE             3              43
  MALE               4              66
                 vv
clus              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  LHCGR MUTATED                                       1
  LHCGR WILD-TYPE                                    12
                 vv
clus              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  LHCGR MUTATED                                                        3
  LHCGR WILD-TYPE                                                     54
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  LHCGR MUTATED                                                   1
  LHCGR WILD-TYPE                                                 4
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  LHCGR MUTATED                                                    0
  LHCGR WILD-TYPE                                                  2
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  LHCGR MUTATED                                                  1
  LHCGR WILD-TYPE                                                9
                 vv
clus              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  LHCGR MUTATED                                                                        1
  LHCGR WILD-TYPE                                                                     23
D47V4, multiclass
                 vv
clus              T1 T2 T3 T4
  LHCGR MUTATED    1  1  2  2
  LHCGR WILD-TYPE  3 45 39 13
D47V5, multiclass
    clus
vv   LHCGR MUTATED LHCGR WILD-TYPE
  T1             1               3
  T2             1              45
  T3             2              39
  T4             2              13
                 vv
clus              N0 N1 N2 N3
  LHCGR MUTATED    2  1  2  1
  LHCGR WILD-TYPE 33 38 17 11
D47V6, multiclass
    clus
vv   LHCGR MUTATED LHCGR WILD-TYPE
  N0             2              33
  N1             1              38
  N2             2              17
  N3             1              11
                 vv
clus              M0 M1 MX
  LHCGR MUTATED    6  0  1
  LHCGR WILD-TYPE 93 13  3
D47V7, multiclass
    clus
vv   LHCGR MUTATED LHCGR WILD-TYPE
  M0             6              93
  M1             0              13
  MX             1               3
                 vv
clus               I II III IV
  LHCGR MUTATED    1  1   2  1
  LHCGR WILD-TYPE 17 31  27 20
D47V8, multiclass
     clus
vv    LHCGR MUTATED LHCGR WILD-TYPE
  I               1              17
  II              1              31
  III             2              27
  IV              1              20
                 vv
clus              R0 R1 R2 RX
  LHCGR MUTATED    3  1  0  3
  LHCGR WILD-TYPE 64  4 12 22
D47V9, multiclass
    clus
vv   LHCGR MUTATED LHCGR WILD-TYPE
  R0             3              64
  R1             1               4
  R2             0              12
  RX             3              22
D47V10, continuous
                       V1.D                          V2 
            "Time to Death"                       "AGE" 
                         V3                          V4 
                   "GENDER"         "HISTOLOGICAL.TYPE" 
                         V5                          V6 
              "PATHOLOGY.T"               "PATHOLOGY.N" 
                         V7                          V8 
      "PATHOLOGICSPREAD(M)"               "TUMOR.STAGE" 
                         V9                         V10 
"COMPLETENESS.OF.RESECTION"     "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
