
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/375768/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/STAD-TP/2907357/1.GDAC_mergedClustering.Finished/STAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=STAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=STAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=308, in cluster file=306, common to both=306
[1]  75 306
[1] "Amp Peak  1(1p36.22) mutation analysis"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            34                            272 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            34                            272 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          101                           205 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          101                           205 
[1] "Amp Peak  3(1q42.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           95                           211 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           95                           211 
[1] "Amp Peak  4(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           91                           215 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           91                           215 
[1] "Amp Peak  5(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            76                            230 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            76                            230 
[1] "Amp Peak  6(5p13.1) mutation analysis"
[1] 3
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                           74                           232 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                           74                           232 
[1] "Amp Peak  7(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           74                           232 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           74                           232 
[1] "Amp Peak  8(6q12) mutation analysis"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         56                         250 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         56                         250 
[1] "Amp Peak  9(6q21) mutation analysis"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         52                         254 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         52                         254 
[1] "Amp Peak 10(7p22.3) mutation analysis"
[1] 3
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                          141                           165 
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                          141                           165 
[1] "Amp Peak 11(7p11.2) mutation analysis"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          128                           178 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          128                           178 
[1] "Amp Peak 12(7q21.2) mutation analysis"
[1] 3
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          124                           182 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          124                           182 
[1] "Amp Peak 13(8p23.1) mutation analysis"
[1] 3
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                          114                           192 
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                          114                           192 
[1] "Amp Peak 14(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                           186                            120 
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                           186                            120 
[1] "Amp Peak 15(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                           45                           261 
  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                           45                           261 
[1] "Amp Peak 16(9q34.3) mutation analysis"
[1] 3
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                           67                           239 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                           67                           239 
[1] "Amp Peak 17(10q26.13) mutation analysis"
[1] 3
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                             55                             251 
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                             55                             251 
[1] "Amp Peak 18(11p13) mutation analysis"
[1] 3
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          48                          258 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          48                          258 
[1] "Amp Peak 19(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                            62                            244 
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                            62                            244 
[1] "Amp Peak 20(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                            76                            230 
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                            76                            230 
[1] "Amp Peak 21(12q15) mutation analysis"
[1] 3
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                          69                          237 
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                          69                          237 
[1] "Amp Peak 22(13q12.3) mutation analysis"
[1] 3
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                           109                            197 
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                           109                            197 
[1] "Amp Peak 23(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                           118                            188 
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                           118                            188 
[1] "Amp Peak 24(15q26.1) mutation analysis"
[1] 3
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                            65                            241 
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                            65                            241 
[1] "Amp Peak 25(17q12) mutation analysis"
[1] 3
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                          83                          223 
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                          83                          223 
[1] "Amp Peak 26(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            80                            226 
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            80                            226 
[1] "Amp Peak 27(19q12) mutation analysis"
[1] 3
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          82                          224 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          82                          224 
[1] "Amp Peak 28(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           191                            115 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           191                            115 
[1] "Amp Peak 29(Xq26.2) mutation analysis"
[1] 3
  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                           60                           246 
  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                           60                           246 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            81                            225 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            81                            225 
[1] "Del Peak  2(1p13.2) mutation analysis"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           55                           251 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           55                           251 
[1] "Del Peak  3(1q44) mutation analysis"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         21                         285 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         21                         285 
[1] "Del Peak  4(2q32.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           34                           272 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           34                           272 
[1] "Del Peak  5(2q37.2) mutation analysis"
[1] 3
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                           40                           266 
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                           40                           266 
[1] "Del Peak  6(3p26.1) mutation analysis"
[1] 3
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           77                           229 
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           77                           229 
[1] "Del Peak  7(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           97                           209 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           97                           209 
[1] "Del Peak  8(3q26.31) mutation analysis"
[1] 3
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            32                            274 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            32                            274 
[1] "Del Peak  9(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                          120                           186 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                          120                           186 
[1] "Del Peak 10(4q34.3) mutation analysis"
[1] 3
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                          111                           195 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                          111                           195 
[1] "Del Peak 11(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           94                           212 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           94                           212 
[1] "Del Peak 12(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           66                           240 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           66                           240 
[1] "Del Peak 13(6q26) mutation analysis"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         58                         248 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         58                         248 
[1] "Del Peak 14(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                           41                           265 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                           41                           265 
[1] "Del Peak 15(7q36.3) mutation analysis"
[1] 3
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                           55                           251 
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                           55                           251 
[1] "Del Peak 16(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                           71                           235 
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                           71                           235 
[1] "Del Peak 17(9p23) mutation analysis"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        110                         196 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        110                         196 
[1] "Del Peak 18(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          109                           197 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          109                           197 
[1] "Del Peak 19(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                            68                            238 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                            68                            238 
[1] "Del Peak 20(10p14) mutation analysis"
[1] 3
  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                          39                          267 
  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                          39                          267 
[1] "Del Peak 21(10q22.3) mutation analysis"
[1] 3
  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                            46                            260 
  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                            46                            260 
[1] "Del Peak 22(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             67                             239 
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             67                             239 
[1] "Del Peak 23(11p15.4) mutation analysis"
[1] 3
  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                            56                            250 
  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                            56                            250 
[1] "Del Peak 24(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                            55                            251 
  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                            55                            251 
[1] "Del Peak 25(12p13.31) mutation analysis"
[1] 3
  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                             46                             260 
  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                             46                             260 
[1] "Del Peak 26(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                            40                            266 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                            40                            266 
[1] "Del Peak 27(14q21.1) mutation analysis"
[1] 3
  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                            67                            239 
  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                            67                            239 
[1] "Del Peak 28(14q32.33) mutation analysis"
[1] 3
  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                             81                             225 
  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                             81                             225 
[1] "Del Peak 29(15q11.2) mutation analysis"
[1] 3
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                            73                            233 
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                            73                            233 
[1] "Del Peak 30(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                            75                            231 
  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                            75                            231 
[1] "Del Peak 31(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                            52                            254 
  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                            52                            254 
[1] "Del Peak 32(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                           104                            202 
  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                           104                            202 
[1] "Del Peak 33(17p12) mutation analysis"
[1] 3
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         103                          203 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         103                          203 
[1] "Del Peak 34(17q24.3) mutation analysis"
[1] 3
  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                            50                            256 
  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                            50                            256 
[1] "Del Peak 35(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                           124                            182 
  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                           124                            182 
[1] "Del Peak 36(18q23) mutation analysis"
[1] 3
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                         116                          190 
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                         116                          190 
[1] "Del Peak 37(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                            91                            215 
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                            91                            215 
[1] "Del Peak 38(19q13.11) mutation analysis"
[1] 3
  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                             40                             266 
  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                             40                             266 
[1] "Del Peak 39(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                            50                            256 
  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                            50                            256 
[1] "Del Peak 40(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                            50                            256 
  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                            50                            256 
[1] "Del Peak 41(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                            97                            209 
  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                            97                            209 
[1] "Del Peak 42(21q22.13) mutation analysis"
[1] 3
  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                            102                             204 
  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                            102                             204 
[1] "Del Peak 43(22q13.31) mutation analysis"
[1] 3
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             91                             215 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             91                             215 
[1] "Del Peak 44(Xp22.2) mutation analysis"
[1] 3
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           52                           254 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           52                           254 
[1] "Del Peak 45(Xp21.1) mutation analysis"
[1] 3
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           45                           261 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           45                           261 
[1] "Del Peak 46(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            38                            268 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            38                            268 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 6 rows and 306 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 306 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p36.22) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            2                            151
  CLUS_2                           28                             90
  CLUS_3                            4                             31
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            0                             37
  CLUS_2                            6                             73
  CLUS_3                            5                             59
  CLUS_4                           15                             63
D1V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED      5    2
  AMP PEAK  1(1P36.22) WILD-TYPE   17   19
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            2                             19
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            1                              6
  CLUS_3                            5                             16
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           14                             75
  CLUS_2                            2                             53
  CLUS_3                            7                             85
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                           10                             94
  CLUS_3                            4                             69

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          12                           141
  CLUS_2                          72                            46
  CLUS_3                          17                            18
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                          23                            56
  CLUS_3                          11                            53
  CLUS_4                          48                            30
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED      6   10
  AMP PEAK  2(1Q21.3) WILD-TYPE   16   11
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           6                            16
  CLUS_2                          10                            11
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           0                             7
  CLUS_3                           7                            14
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          23                            66
  CLUS_2                          10                            45
  CLUS_3                          42                            50
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          30                            29
  CLUS_2                          28                            76
  CLUS_3                          17                            56

Clustering(3) Variable = Amp Peak  3(1q42.3) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          13                           140
  CLUS_2                          62                            56
  CLUS_3                          20                            15
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                          21                            58
  CLUS_3                          14                            50
  CLUS_4                          41                            37
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED      7    8
  AMP PEAK  3(1Q42.3) WILD-TYPE   15   13
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                           7                            15
  CLUS_2                           8                            13
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           1                             6
  CLUS_3                           7                            14
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          19                            70
  CLUS_2                          10                            45
  CLUS_3                          43                            49
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          28                            31
  CLUS_2                          27                            77
  CLUS_3                          17                            56

Clustering(4) Variable = Amp Peak  4(3q26.2) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          23                           130
  CLUS_2                          52                            66
  CLUS_3                          16                            19
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          11                            26
  CLUS_2                          22                            57
  CLUS_3                           9                            55
  CLUS_4                          31                            47
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) MUTATED     11    5
  AMP PEAK  4(3Q26.2) WILD-TYPE   11   16
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          11                            11
  CLUS_2                           5                            16
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           2                             5
  CLUS_3                          11                            10
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          30                            59
  CLUS_2                           9                            46
  CLUS_3                          23                            69
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          16                            43
  CLUS_2                          31                            73
  CLUS_3                          15                            58

Clustering(5) Variable = Amp Peak  5(5p15.33) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            8                            145
  CLUS_2                           62                             56
  CLUS_3                            6                             29
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                           12                             67
  CLUS_3                            7                             57
  CLUS_4                           38                             40
D5V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED      5    7
  AMP PEAK  5(5P15.33) WILD-TYPE   17   14
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            7                             14
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            1                              6
  CLUS_3                            5                             16
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           20                             69
  CLUS_2                            7                             48
  CLUS_3                           32                             60
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           26                             33
  CLUS_2                           20                             84
  CLUS_3                           13                             60

Clustering(6) Variable = Amp Peak  6(5p13.1) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           7                           146
  CLUS_2                          60                            58
  CLUS_3                           7                            28
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                          12                            67
  CLUS_3                           7                            57
  CLUS_4                          34                            44
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5P13.1) MUTATED      7    7
  AMP PEAK  6(5P13.1) WILD-TYPE   15   14
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           7                            15
  CLUS_2                           7                            14
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           6                             9
  CLUS_2                           1                             6
  CLUS_3                           7                            14
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          18                            71
  CLUS_2                           9                            46
  CLUS_3                          31                            61
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          24                            35
  CLUS_2                          21                            83
  CLUS_3                          13                            60

Clustering(7) Variable = Amp Peak  7(6p21.1) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                           7                           146
  CLUS_2                          57                            61
  CLUS_3                          10                            25
D7V2, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                          18                            61
  CLUS_3                           5                            59
  CLUS_4                          33                            45
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P21.1) MUTATED      5    8
  AMP PEAK  7(6P21.1) WILD-TYPE   17   13
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           8                            13
D7V4, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           3                             4
  CLUS_3                           5                            16
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          19                            70
  CLUS_2                           8                            47
  CLUS_3                          30                            62
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          25                            34
  CLUS_2                          20                            84
  CLUS_3                          12                            61

Clustering(8) Variable = Amp Peak  8(6q12) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         7                         146
  CLUS_2                        41                          77
  CLUS_3                         8                          27
D8V2, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         2                          35
  CLUS_2                        14                          65
  CLUS_3                         2                          62
  CLUS_4                        24                          54
D8V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED      5    7
  AMP PEAK  8(6Q12) WILD-TYPE   17   14
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         5                          17
  CLUS_2                         7                          14
D8V4, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         5                          10
  CLUS_2                         2                           5
  CLUS_3                         5                          16
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        13                          76
  CLUS_2                         6                          49
  CLUS_3                        23                          69
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        18                          41
  CLUS_2                        15                          89
  CLUS_3                         9                          64

Clustering(9) Variable = Amp Peak  9(6q21) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         8                         145
  CLUS_2                        39                          79
  CLUS_3                         5                          30
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         1                          36
  CLUS_2                        12                          67
  CLUS_3                         4                          60
  CLUS_4                        22                          56
D9V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED      3    8
  AMP PEAK  9(6Q21) WILD-TYPE   19   13
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         3                          19
  CLUS_2                         8                          13
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         6                           9
  CLUS_2                         1                           6
  CLUS_3                         4                          17
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        14                          75
  CLUS_2                         5                          50
  CLUS_3                        18                          74
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        16                          43
  CLUS_2                        14                          90
  CLUS_3                         7                          66

Clustering(10) Variable = Amp Peak 10(7p22.3) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          29                           124
  CLUS_2                          82                            36
  CLUS_3                          30                             5
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          14                            23
  CLUS_2                          37                            42
  CLUS_3                          14                            50
  CLUS_4                          50                            28
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P22.3) MUTATED     11   12
  AMP PEAK 10(7P22.3) WILD-TYPE   11    9
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          11                            11
  CLUS_2                          12                             9
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           2                             5
  CLUS_3                          12                             9
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          40                            49
  CLUS_2                          15                            40
  CLUS_3                          49                            43
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  CLUS_1                          37                            22
  CLUS_2                          43                            61
  CLUS_3                          24                            49

Clustering(11) Variable = Amp Peak 11(7p11.2) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          27                           126
  CLUS_2                          70                            48
  CLUS_3                          31                             4
D11V2, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          14                            23
  CLUS_2                          36                            43
  CLUS_3                          13                            51
  CLUS_4                          42                            36
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7P11.2) MUTATED      9   11
  AMP PEAK 11(7P11.2) WILD-TYPE   13   10
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           9                            13
  CLUS_2                          11                            10
D11V4, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           8                             7
  CLUS_2                           2                             5
  CLUS_3                          10                            11
D11V5, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          36                            53
  CLUS_2                          13                            42
  CLUS_3                          47                            45
D11V6, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          32                            27
  CLUS_2                          42                            62
  CLUS_3                          22                            51

Clustering(12) Variable = Amp Peak 12(7q21.2) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          28                           125
  CLUS_2                          65                            53
  CLUS_3                          31                             4
D12V2, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          14                            23
  CLUS_2                          32                            47
  CLUS_3                          14                            50
  CLUS_4                          39                            39
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(7Q21.2) MUTATED     10   12
  AMP PEAK 12(7Q21.2) WILD-TYPE   12    9
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          12                             9
D12V4, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           2                             5
  CLUS_3                          11                            10
D12V5, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          42                            47
  CLUS_2                          14                            41
  CLUS_3                          41                            51
D12V6, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          27                            32
  CLUS_2                          48                            56
  CLUS_3                          22                            51

Clustering(13) Variable = Amp Peak 13(8p23.1) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          58                            95
  CLUS_2                          32                            86
  CLUS_3                          24                            11
D13V2, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          15                            22
  CLUS_2                          34                            45
  CLUS_3                          22                            42
  CLUS_4                          20                            58
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(8P23.1) MUTATED     12    8
  AMP PEAK 13(8P23.1) WILD-TYPE   10   13
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          12                            10
  CLUS_2                           8                            13
D13V4, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           2                             5
  CLUS_3                          13                             8
D13V5, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          32                            57
  CLUS_2                          15                            40
  CLUS_3                          32                            60
D13V6, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          17                            42
  CLUS_2                          38                            66
  CLUS_3                          24                            49

Clustering(14) Variable = Amp Peak 14(8q24.21) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           67                             86
  CLUS_2                           91                             27
  CLUS_3                           28                              7
D14V2, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           15                             22
  CLUS_2                           47                             32
  CLUS_3                           29                             35
  CLUS_4                           58                             20
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(8Q24.21) MUTATED     19   15
  AMP PEAK 14(8Q24.21) WILD-TYPE    3    6
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           19                              3
  CLUS_2                           15                              6
D14V4, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           10                              5
  CLUS_2                            6                              1
  CLUS_3                           18                              3
D14V5, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           55                             34
  CLUS_2                           25                             30
  CLUS_3                           58                             34
D14V6, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           43                             16
  CLUS_2                           59                             45
  CLUS_3                           36                             37

Clustering(15) Variable = Amp Peak 15(9p24.1) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  CLUS_1                          16                           137
  CLUS_2                          24                            94
  CLUS_3                           5                            30
D15V2, multiclass
        clus
vv       AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                          10                            69
  CLUS_3                           5                            59
  CLUS_4                          14                            64
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(9P24.1) MUTATED      3    4
  AMP PEAK 15(9P24.1) WILD-TYPE   19   17
        clus
vv       AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           4                            17
D15V4, multiclass
        clus
vv       AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           3                             4
  CLUS_3                           2                            19
D15V5, multiclass
        clus
vv       AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  CLUS_1                          12                            77
  CLUS_2                           5                            50
  CLUS_3                          13                            79
D15V6, multiclass
        clus
vv       AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  CLUS_1                           8                            51
  CLUS_2                          16                            88
  CLUS_3                           6                            67

Clustering(16) Variable = Amp Peak 16(9q34.3) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          14                           139
  CLUS_2                          43                            75
  CLUS_3                          10                            25
D16V2, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                           5                            32
  CLUS_2                          15                            64
  CLUS_3                           9                            55
  CLUS_4                          24                            54
D16V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED      6    7
  AMP PEAK 16(9Q34.3) WILD-TYPE   16   14
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                           6                            16
  CLUS_2                           7                            14
D16V4, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           2                             5
  CLUS_3                           6                            15
D16V5, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          17                            72
  CLUS_2                           8                            47
  CLUS_3                          22                            70
D16V6, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          16                            43
  CLUS_2                          18                            86
  CLUS_3                          13                            60

Clustering(17) Variable = Amp Peak 17(10q26.13) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            13                             140
  CLUS_2                            35                              83
  CLUS_3                             7                              28
D17V2, multiclass
        clus
vv       AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                             3                              34
  CLUS_2                            11                              68
  CLUS_3                             7                              57
  CLUS_4                            22                              56
D17V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(10Q26.13) MUTATED      5    5
  AMP PEAK 17(10Q26.13) WILD-TYPE   17   16
        clus
vv       AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                             5                              17
  CLUS_2                             5                              16
D17V4, multiclass
        clus
vv       AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                             3                              12
  CLUS_2                             2                               5
  CLUS_3                             5                              16
D17V5, multiclass
        clus
vv       AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            13                              76
  CLUS_2                            11                              44
  CLUS_3                            20                              72
D17V6, multiclass
        clus
vv       AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            15                              44
  CLUS_2                            16                              88
  CLUS_3                            13                              60

Clustering(18) Variable = Amp Peak 18(11p13) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         13                          140
  CLUS_2                         30                           88
  CLUS_3                          5                           30
D18V2, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          8                           29
  CLUS_2                          9                           70
  CLUS_3                          7                           57
  CLUS_4                         15                           63
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED      5    3
  AMP PEAK 18(11P13) WILD-TYPE   17   18
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          5                           17
  CLUS_2                          3                           18
D18V4, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          2                           13
  CLUS_2                          0                            7
  CLUS_3                          6                           15
D18V5, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         10                           79
  CLUS_2                          8                           47
  CLUS_3                         19                           73
D18V6, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         15                           44
  CLUS_2                         12                           92
  CLUS_3                         10                           63

Clustering(19) Variable = Amp Peak 19(11q13.3) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  CLUS_1                           12                            141
  CLUS_2                           42                             76
  CLUS_3                            8                             27
D19V2, multiclass
        clus
vv       AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  CLUS_1                            7                             30
  CLUS_2                           16                             63
  CLUS_3                            6                             58
  CLUS_4                           20                             58
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q13.3) MUTATED      6    5
  AMP PEAK 19(11Q13.3) WILD-TYPE   16   16
        clus
vv       AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            5                             16
D19V4, multiclass
        clus
vv       AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            0                              7
  CLUS_3                            7                             14
D19V5, multiclass
        clus
vv       AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  CLUS_1                           11                             78
  CLUS_2                            8                             47
  CLUS_3                           27                             65
D19V6, multiclass
        clus
vv       AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  CLUS_1                           18                             41
  CLUS_2                           18                             86
  CLUS_3                           10                             63

Clustering(20) Variable = Amp Peak 20(12p12.1) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           19                            134
  CLUS_2                           46                             72
  CLUS_3                           11                             24
D20V2, multiclass
        clus
vv       AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                           16                             63
  CLUS_3                           13                             51
  CLUS_4                           32                             46
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(12P12.1) MUTATED      5    2
  AMP PEAK 20(12P12.1) WILD-TYPE   17   19
        clus
vv       AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            2                             19
D20V4, multiclass
        clus
vv       AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            0                              7
  CLUS_3                            5                             16
D20V5, multiclass
        clus
vv       AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           20                             69
  CLUS_2                            8                             47
  CLUS_3                           26                             66
D20V6, multiclass
        clus
vv       AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           15                             44
  CLUS_2                           24                             80
  CLUS_3                           15                             58

Clustering(21) Variable = Amp Peak 21(12q15) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                         19                          134
  CLUS_2                         42                           76
  CLUS_3                          8                           27
D21V2, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                          9                           28
  CLUS_2                          9                           70
  CLUS_3                         12                           52
  CLUS_4                         27                           51
D21V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(12Q15) MUTATED      6    4
  AMP PEAK 21(12Q15) WILD-TYPE   16   17
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                          6                           16
  CLUS_2                          4                           17
D21V4, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                          3                           12
  CLUS_2                          2                            5
  CLUS_3                          5                           16
D21V5, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                         22                           67
  CLUS_2                          9                           46
  CLUS_3                         18                           74
D21V6, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                         14                           45
  CLUS_2                         21                           83
  CLUS_3                         14                           59

Clustering(22) Variable = Amp Peak 22(13q12.3) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  CLUS_1                           25                            128
  CLUS_2                           62                             56
  CLUS_3                           22                             13
D22V2, multiclass
        clus
vv       AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                           22                             57
  CLUS_3                           18                             46
  CLUS_4                           42                             36
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(13Q12.3) MUTATED      7   11
  AMP PEAK 22(13Q12.3) WILD-TYPE   15   10
        clus
vv       AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                           11                             10
D22V4, multiclass
        clus
vv       AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  CLUS_1                            9                              6
  CLUS_2                            1                              6
  CLUS_3                            8                             13
D22V5, multiclass
        clus
vv       AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  CLUS_1                           31                             58
  CLUS_2                           15                             40
  CLUS_3                           35                             57
D22V6, multiclass
        clus
vv       AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  CLUS_1                           26                             33
  CLUS_2                           30                             74
  CLUS_3                           25                             48

Clustering(23) Variable = Amp Peak 23(13q22.1) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           30                            123
  CLUS_2                           66                             52
  CLUS_3                           22                             13
D23V2, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           23                             56
  CLUS_3                           19                             45
  CLUS_4                           43                             35
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(13Q22.1) MUTATED      8   13
  AMP PEAK 23(13Q22.1) WILD-TYPE   14    8
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                            8                             14
  CLUS_2                           13                              8
D23V4, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                            9                              6
  CLUS_2                            3                              4
  CLUS_3                            9                             12
D23V5, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           34                             55
  CLUS_2                           16                             39
  CLUS_3                           38                             54
D23V6, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           34                             25
  CLUS_2                           29                             75
  CLUS_3                           25                             48

Clustering(24) Variable = Amp Peak 24(15q26.1) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  CLUS_1                            8                            145
  CLUS_2                           54                             64
  CLUS_3                            3                             32
D24V2, multiclass
        clus
vv       AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  CLUS_1                            1                             36
  CLUS_2                           16                             63
  CLUS_3                            9                             55
  CLUS_4                           29                             49
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(15Q26.1) MUTATED      5    4
  AMP PEAK 24(15Q26.1) WILD-TYPE   17   17
        clus
vv       AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            4                             17
D24V4, multiclass
        clus
vv       AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            2                              5
  CLUS_3                            4                             17
D24V5, multiclass
        clus
vv       AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  CLUS_1                           24                             65
  CLUS_2                            5                             50
  CLUS_3                           22                             70
D24V6, multiclass
        clus
vv       AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  CLUS_1                           21                             38
  CLUS_2                           19                             85
  CLUS_3                           11                             62

Clustering(25) Variable = Amp Peak 25(17q12) mutation analysis
D25V1, multiclass
        clus
vv       AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  CLUS_1                         12                          141
  CLUS_2                         64                           54
  CLUS_3                          7                           28
D25V2, multiclass
        clus
vv       AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  CLUS_1                         11                           26
  CLUS_2                         16                           63
  CLUS_3                         10                           54
  CLUS_4                         33                           45
D25V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 25(17Q12) MUTATED      5    6
  AMP PEAK 25(17Q12) WILD-TYPE   17   15
        clus
vv       AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  CLUS_1                          5                           17
  CLUS_2                          6                           15
D25V4, multiclass
        clus
vv       AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  CLUS_1                          6                            9
  CLUS_2                          0                            7
  CLUS_3                          5                           16
D25V5, multiclass
        clus
vv       AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  CLUS_1                         24                           65
  CLUS_2                          6                           49
  CLUS_3                         30                           62
D25V6, multiclass
        clus
vv       AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  CLUS_1                         25                           34
  CLUS_2                         21                           83
  CLUS_3                         14                           59

Clustering(26) Variable = Amp Peak 26(18q11.2) mutation analysis
D26V1, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           19                            134
  CLUS_2                           53                             65
  CLUS_3                            8                             27
D26V2, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                            4                             33
  CLUS_2                           16                             63
  CLUS_3                           12                             52
  CLUS_4                           31                             47
D26V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(18Q11.2) MUTATED      7    7
  AMP PEAK 26(18Q11.2) WILD-TYPE   15   14
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                            7                             14
D26V4, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            1                              6
  CLUS_3                            8                             13
D26V5, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           21                             68
  CLUS_2                           11                             44
  CLUS_3                           28                             64
D26V6, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           20                             39
  CLUS_2                           26                             78
  CLUS_3                           14                             59

Clustering(27) Variable = Amp Peak 27(19q12) mutation analysis
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         11                          142
  CLUS_2                         64                           54
  CLUS_3                          7                           28
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                          7                           30
  CLUS_2                         12                           67
  CLUS_3                          9                           55
  CLUS_4                         42                           36
D27V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED      5    7
  AMP PEAK 27(19Q12) WILD-TYPE   17   14
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                          5                           17
  CLUS_2                          7                           14
D27V4, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                          7                            8
  CLUS_2                          0                            7
  CLUS_3                          5                           16
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         18                           71
  CLUS_2                          9                           46
  CLUS_3                         33                           59
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         29                           30
  CLUS_2                         21                           83
  CLUS_3                         10                           63

Clustering(28) Variable = Amp Peak 28(20q13.2) mutation analysis
D28V1, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           50                            103
  CLUS_2                          108                             10
  CLUS_3                           33                              2
D28V2, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           25                             12
  CLUS_2                           42                             37
  CLUS_3                           27                             37
  CLUS_4                           66                             12
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(20Q13.2) MUTATED     13   14
  AMP PEAK 28(20Q13.2) WILD-TYPE    9    7
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           13                              9
  CLUS_2                           14                              7
D28V4, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           11                              4
  CLUS_2                            2                              5
  CLUS_3                           14                              7
D28V5, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           54                             35
  CLUS_2                           27                             28
  CLUS_3                           65                             27
D28V6, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           45                             14
  CLUS_2                           61                             43
  CLUS_3                           40                             33

Clustering(29) Variable = Amp Peak 29(Xq26.2) mutation analysis
D29V1, multiclass
        clus
vv       AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  CLUS_1                          13                           140
  CLUS_2                          36                            82
  CLUS_3                          11                            24
D29V2, multiclass
        clus
vv       AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                          18                            61
  CLUS_3                           8                            56
  CLUS_4                          17                            61
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ26.2) MUTATED      3    6
  AMP PEAK 29(XQ26.2) WILD-TYPE   19   15
        clus
vv       AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           6                            15
D29V4, multiclass
        clus
vv       AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  CLUS_1                           4                            11
  CLUS_2                           2                             5
  CLUS_3                           3                            18
D29V5, multiclass
        clus
vv       AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  CLUS_1                          18                            71
  CLUS_2                           4                            51
  CLUS_3                          20                            72
D29V6, multiclass
        clus
vv       AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  CLUS_1                          10                            49
  CLUS_2                          18                            86
  CLUS_3                          14                            59

Clustering(30) Variable = Del Peak  1(1p36.11) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                            141
  CLUS_2                           58                             60
  CLUS_3                           11                             24
D30V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                           20                             59
  CLUS_3                           11                             53
  CLUS_4                           30                             48
D30V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED      7   10
  DEL PEAK  1(1P36.11) WILD-TYPE   15   11
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                           10                             11
D30V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            4                              3
  CLUS_3                            7                             14
D30V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           26                             63
  CLUS_2                            8                             47
  CLUS_3                           28                             64
D30V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           24                             35
  CLUS_2                           25                             79
  CLUS_3                           13                             60

Clustering(31) Variable = Del Peak  2(1p13.2) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                           147
  CLUS_2                          44                            74
  CLUS_3                           5                            30
D31V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                          11                            68
  CLUS_3                           9                            55
  CLUS_4                          23                            55
D31V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.2) MUTATED      3    7
  DEL PEAK  2(1P13.2) WILD-TYPE   19   14
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           7                            14
D31V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            11
  CLUS_2                           2                             5
  CLUS_3                           4                            17
D31V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          18                            71
  CLUS_2                           4                            51
  CLUS_3                          20                            72
D31V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          17                            42
  CLUS_2                          17                            87
  CLUS_3                           8                            65

Clustering(32) Variable = Del Peak  3(1q44) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                         149
  CLUS_2                        13                         105
  CLUS_3                         4                          31
D32V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         3                          34
  CLUS_2                         3                          76
  CLUS_3                         0                          64
  CLUS_4                         9                          69
D32V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) MUTATED      2    4
  DEL PEAK  3(1Q44) WILD-TYPE   20   17
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         2                          20
  CLUS_2                         4                          17
D32V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         3                          12
  CLUS_2                         1                           6
  CLUS_3                         2                          19
D32V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         8                          81
  CLUS_2                         1                          54
  CLUS_3                         5                          87
D32V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         3                          56
  CLUS_2                        10                          94
  CLUS_3                         1                          72

Clustering(33) Variable = Del Peak  4(2q32.1) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                           7                           146
  CLUS_2                          24                            94
  CLUS_3                           3                            32
D33V2, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                           7                            72
  CLUS_3                           4                            60
  CLUS_4                          13                            65
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) MUTATED      4    2
  DEL PEAK  4(2Q32.1) WILD-TYPE   18   19
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           2                            19
D33V4, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           0                             7
  CLUS_3                           4                            17
D33V5, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                           7                            82
  CLUS_2                           9                            46
  CLUS_3                          12                            80
D33V6, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                          12                            47
  CLUS_2                           8                            96
  CLUS_3                           8                            65

Clustering(34) Variable = Del Peak  5(2q37.2) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  CLUS_1                           5                           148
  CLUS_2                          27                            91
  CLUS_3                           8                            27
D34V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                           8                            71
  CLUS_3                           7                            57
  CLUS_4                          19                            59
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.2) MUTATED      3    1
  DEL PEAK  5(2Q37.2) WILD-TYPE   19   20
        clus
vv       DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           1                            20
D34V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           0                             7
  CLUS_3                           3                            18
D34V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  CLUS_1                           9                            80
  CLUS_2                           5                            50
  CLUS_3                          18                            74
D34V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  CLUS_1                          15                            44
  CLUS_2                          12                            92
  CLUS_3                           5                            68

Clustering(35) Variable = Del Peak  6(3p26.1) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          12                           141
  CLUS_2                          50                            68
  CLUS_3                          15                            20
D35V2, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                           7                            30
  CLUS_2                          20                            59
  CLUS_3                           6                            58
  CLUS_4                          30                            48
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.1) MUTATED      4    8
  DEL PEAK  6(3P26.1) WILD-TYPE   18   13
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           8                            13
D35V4, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           2                             5
  CLUS_3                           3                            18
D35V5, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          19                            70
  CLUS_2                           9                            46
  CLUS_3                          30                            62
D35V6, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          24                            35
  CLUS_2                          21                            83
  CLUS_3                          13                            60

Clustering(36) Variable = Del Peak  7(3p14.2) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          17                           136
  CLUS_2                          65                            53
  CLUS_3                          15                            20
D36V2, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          13                            24
  CLUS_2                          26                            53
  CLUS_3                           8                            56
  CLUS_4                          37                            41
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) MUTATED      4    6
  DEL PEAK  7(3P14.2) WILD-TYPE   18   15
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           6                            15
D36V4, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           6                             9
  CLUS_2                           0                             7
  CLUS_3                           4                            17
D36V5, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          26                            63
  CLUS_2                          12                            43
  CLUS_3                          33                            59
D36V6, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          26                            33
  CLUS_2                          30                            74
  CLUS_3                          15                            58

Clustering(37) Variable = Del Peak  8(3q26.31) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            5                            148
  CLUS_2                           24                             94
  CLUS_3                            3                             32
D37V2, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            1                             36
  CLUS_2                           10                             69
  CLUS_3                            2                             62
  CLUS_4                           14                             64
D37V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q26.31) MUTATED      1    3
  DEL PEAK  8(3Q26.31) WILD-TYPE   21   18
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            1                             21
  CLUS_2                            3                             18
D37V4, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            0                              7
  CLUS_3                            1                             20
D37V5, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            4                             85
  CLUS_2                            3                             52
  CLUS_3                           13                             79
D37V6, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           11                             48
  CLUS_2                            4                            100
  CLUS_3                            5                             68

Clustering(38) Variable = Del Peak  9(4q22.1) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          17                           136
  CLUS_2                          84                            34
  CLUS_3                          19                            16
D38V2, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                           5                            32
  CLUS_2                          29                            50
  CLUS_3                          16                            48
  CLUS_4                          49                            29
D38V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) MUTATED      7   11
  DEL PEAK  9(4Q22.1) WILD-TYPE   15   10
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                           7                            15
  CLUS_2                          11                            10
D38V4, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                           8                             7
  CLUS_2                           2                             5
  CLUS_3                           8                            13
D38V5, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          29                            60
  CLUS_2                          14                            41
  CLUS_3                          47                            45
D38V6, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          36                            23
  CLUS_2                          31                            73
  CLUS_3                          23                            50

Clustering(39) Variable = Del Peak 10(4q34.3) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          18                           135
  CLUS_2                          78                            40
  CLUS_3                          15                            20
D39V2, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                          25                            54
  CLUS_3                          20                            44
  CLUS_4                          44                            34
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q34.3) MUTATED      5   12
  DEL PEAK 10(4Q34.3) WILD-TYPE   17    9
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                          12                             9
D39V4, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           2                             5
  CLUS_3                           6                            15
D39V5, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          25                            64
  CLUS_2                          15                            40
  CLUS_3                          43                            49
D39V6, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          35                            24
  CLUS_2                          28                            76
  CLUS_3                          20                            53

Clustering(40) Variable = Del Peak 11(5q11.2) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                           8                           145
  CLUS_2                          76                            42
  CLUS_3                          10                            25
D40V2, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                          24                            55
  CLUS_3                           8                            56
  CLUS_4                          46                            32
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) MUTATED      3    9
  DEL PEAK 11(5Q11.2) WILD-TYPE   19   12
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           9                            12
D40V4, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           1                             6
  CLUS_3                           4                            17
D40V5, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          24                            65
  CLUS_2                           5                            50
  CLUS_3                          40                            52
D40V6, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          32                            27
  CLUS_2                          26                            78
  CLUS_3                          11                            62

Clustering(41) Variable = Del Peak 12(6p25.3) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                          13                           140
  CLUS_2                          48                            70
  CLUS_3                           5                            30
D41V2, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                          17                            62
  CLUS_3                          10                            54
  CLUS_4                          28                            50
D41V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED      3    4
  DEL PEAK 12(6P25.3) WILD-TYPE   19   17
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           4                            17
D41V4, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           2                             5
  CLUS_3                           2                            19
D41V5, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                          20                            69
  CLUS_2                           7                            48
  CLUS_3                          21                            71
D41V6, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                          23                            36
  CLUS_2                          17                            87
  CLUS_3                           8                            65

Clustering(42) Variable = Del Peak 13(6q26) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        11                         142
  CLUS_2                        38                          80
  CLUS_3                         9                          26
D42V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          35
  CLUS_2                        14                          65
  CLUS_3                         9                          55
  CLUS_4                        22                          56
D42V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED      6    3
  DEL PEAK 13(6Q26) WILD-TYPE   16   18
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         6                          16
  CLUS_2                         3                          18
D42V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          13
  CLUS_2                         1                           6
  CLUS_3                         6                          15
D42V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        22                          67
  CLUS_2                         7                          48
  CLUS_3                        18                          74
D42V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        16                          43
  CLUS_2                        21                          83
  CLUS_3                        10                          63

Clustering(43) Variable = Del Peak 14(7q31.1) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           6                           147
  CLUS_2                          33                            85
  CLUS_3                           2                            33
D43V2, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                          13                            66
  CLUS_3                           2                            62
  CLUS_4                          16                            62
D43V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      5    2
  DEL PEAK 14(7Q31.1) WILD-TYPE   17   19
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           2                            19
D43V4, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           0                             7
  CLUS_3                           5                            16
D43V5, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                           4                            51
  CLUS_3                          16                            76
D43V6, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                          11                            48
  CLUS_2                           9                            95
  CLUS_3                           5                            68

Clustering(44) Variable = Del Peak 15(7q36.3) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  CLUS_1                           4                           149
  CLUS_2                          49                            69
  CLUS_3                           2                            33
D44V2, multiclass
        clus
vv       DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  CLUS_1                           0                            37
  CLUS_2                          16                            63
  CLUS_3                           5                            59
  CLUS_4                          25                            53
D44V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(7Q36.3) MUTATED      5    3
  DEL PEAK 15(7Q36.3) WILD-TYPE   17   18
        clus
vv       DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           3                            18
D44V4, multiclass
        clus
vv       DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           0                             7
  CLUS_3                           5                            16
D44V5, multiclass
        clus
vv       DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  CLUS_1                          14                            75
  CLUS_2                           6                            49
  CLUS_3                          21                            71
D44V6, multiclass
        clus
vv       DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  CLUS_1                          19                            40
  CLUS_2                          16                            88
  CLUS_3                           6                            67

Clustering(45) Variable = Del Peak 16(8p23.2) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  CLUS_1                           8                           145
  CLUS_2                          59                            59
  CLUS_3                           4                            31
D45V2, multiclass
        clus
vv       DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                          16                            63
  CLUS_3                           9                            55
  CLUS_4                          33                            45
D45V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(8P23.2) MUTATED      5    7
  DEL PEAK 16(8P23.2) WILD-TYPE   17   14
        clus
vv       DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           7                            14
D45V4, multiclass
        clus
vv       DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           2                             5
  CLUS_3                           5                            16
D45V5, multiclass
        clus
vv       DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  CLUS_1                          18                            71
  CLUS_2                           8                            47
  CLUS_3                          29                            63
D45V6, multiclass
        clus
vv       DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  CLUS_1                          26                            33
  CLUS_2                          18                            86
  CLUS_3                          11                            62

Clustering(46) Variable = Del Peak 17(9p23) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        17                         136
  CLUS_2                        82                          36
  CLUS_3                        11                          24
D46V2, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         7                          30
  CLUS_2                        26                          53
  CLUS_3                        16                          48
  CLUS_4                        42                          36
D46V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(9P23) MUTATED      6   11
  DEL PEAK 17(9P23) WILD-TYPE   16   10
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         6                          16
  CLUS_2                        11                          10
D46V4, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         8                           7
  CLUS_2                         2                           5
  CLUS_3                         7                          14
D46V5, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        32                          57
  CLUS_2                        14                          41
  CLUS_3                        43                          49
D46V6, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        31                          28
  CLUS_2                        35                          69
  CLUS_3                        23                          50

Clustering(47) Variable = Del Peak 18(9p21.3) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          17                           136
  CLUS_2                          81                            37
  CLUS_3                          11                            24
D47V2, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                          26                            53
  CLUS_3                          15                            49
  CLUS_4                          48                            30
D47V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(9P21.3) MUTATED      6   10
  DEL PEAK 18(9P21.3) WILD-TYPE   16   11
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           6                            16
  CLUS_2                          10                            11
D47V4, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           6                             9
  CLUS_2                           3                             4
  CLUS_3                           7                            14
D47V5, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          28                            61
  CLUS_2                          14                            41
  CLUS_3                          45                            47
D47V6, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          33                            26
  CLUS_2                          33                            71
  CLUS_3                          21                            52

Clustering(48) Variable = Del Peak 19(9q21.11) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            8                            145
  CLUS_2                           53                             65
  CLUS_3                            7                             28
D48V2, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                           19                             60
  CLUS_3                            9                             55
  CLUS_4                           28                             50
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(9Q21.11) MUTATED      3    4
  DEL PEAK 19(9Q21.11) WILD-TYPE   19   17
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            4                             17
D48V4, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            0                              7
  CLUS_3                            4                             17
D48V5, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           14                             75
  CLUS_2                           11                             44
  CLUS_3                           27                             65
D48V6, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           23                             36
  CLUS_2                           17                             87
  CLUS_3                           12                             61

Clustering(49) Variable = Del Peak 20(10p14) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  CLUS_1                          5                          148
  CLUS_2                         31                           87
  CLUS_3                          3                           32
D49V2, multiclass
        clus
vv       DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  CLUS_1                          1                           36
  CLUS_2                          8                           71
  CLUS_3                          3                           61
  CLUS_4                         17                           61
D49V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(10P14) MUTATED      4    5
  DEL PEAK 20(10P14) WILD-TYPE   18   16
        clus
vv       DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  CLUS_1                          4                           18
  CLUS_2                          5                           16
D49V4, multiclass
        clus
vv       DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  CLUS_1                          3                           12
  CLUS_2                          2                            5
  CLUS_3                          4                           17
D49V5, multiclass
        clus
vv       DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  CLUS_1                         14                           75
  CLUS_2                          2                           53
  CLUS_3                         18                           74
D49V6, multiclass
        clus
vv       DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  CLUS_1                         14                           45
  CLUS_2                         14                           90
  CLUS_3                          6                           67

Clustering(50) Variable = Del Peak 21(10q22.3) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  CLUS_1                            3                            150
  CLUS_2                           38                             80
  CLUS_3                            5                             30
D50V2, multiclass
        clus
vv       DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                           11                             68
  CLUS_3                            2                             62
  CLUS_4                           22                             56
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q22.3) MUTATED      2    6
  DEL PEAK 21(10Q22.3) WILD-TYPE   20   15
        clus
vv       DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            6                             15
D50V4, multiclass
        clus
vv       DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            0                              7
  CLUS_3                            3                             18
D50V5, multiclass
        clus
vv       DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  CLUS_1                           15                             74
  CLUS_2                            2                             53
  CLUS_3                           17                             75
D50V6, multiclass
        clus
vv       DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  CLUS_1                           15                             44
  CLUS_2                           16                             88
  CLUS_3                            3                             70

Clustering(51) Variable = Del Peak 22(10q23.31) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             5                             148
  CLUS_2                            56                              62
  CLUS_3                             6                              29
D51V2, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             4                              33
  CLUS_2                            13                              66
  CLUS_3                             4                              60
  CLUS_4                            32                              46
D51V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(10Q23.31) MUTATED      2   10
  DEL PEAK 22(10Q23.31) WILD-TYPE   20   11
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             2                              20
  CLUS_2                            10                              11
D51V4, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             7                               8
  CLUS_2                             2                               5
  CLUS_3                             3                              18
D51V5, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                            24                              65
  CLUS_2                             2                              53
  CLUS_3                            28                              64
D51V6, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                            22                              37
  CLUS_2                            27                              77
  CLUS_3                             5                              68

Clustering(52) Variable = Del Peak 23(11p15.4) mutation analysis
D52V1, multiclass
        clus
vv       DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  CLUS_1                           10                            143
  CLUS_2                           44                             74
  CLUS_3                            2                             33
D52V2, multiclass
        clus
vv       DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                           10                             69
  CLUS_3                            5                             59
  CLUS_4                           25                             53
D52V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11P15.4) MUTATED      6    6
  DEL PEAK 23(11P15.4) WILD-TYPE   16   15
        clus
vv       DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            6                             15
D52V4, multiclass
        clus
vv       DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            2                              5
  CLUS_3                            6                             15
D52V5, multiclass
        clus
vv       DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  CLUS_1                           19                             70
  CLUS_2                            6                             49
  CLUS_3                           21                             71
D52V6, multiclass
        clus
vv       DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  CLUS_1                           20                             39
  CLUS_2                           19                             85
  CLUS_3                            7                             66

Clustering(53) Variable = Del Peak 24(11q23.2) mutation analysis
D53V1, multiclass
        clus
vv       DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  CLUS_1                           12                            141
  CLUS_2                           38                             80
  CLUS_3                            5                             30
D53V2, multiclass
        clus
vv       DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                           10                             69
  CLUS_3                            8                             56
  CLUS_4                           25                             53
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.2) MUTATED      4    4
  DEL PEAK 24(11Q23.2) WILD-TYPE   18   17
        clus
vv       DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  CLUS_1                            4                             18
  CLUS_2                            4                             17
D53V4, multiclass
        clus
vv       DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            3                              4
  CLUS_3                            3                             18
D53V5, multiclass
        clus
vv       DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  CLUS_1                           22                             67
  CLUS_2                            5                             50
  CLUS_3                           16                             76
D53V6, multiclass
        clus
vv       DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  CLUS_1                           14                             45
  CLUS_2                           20                             84
  CLUS_3                            9                             64

Clustering(54) Variable = Del Peak 25(12p13.31) mutation analysis
D54V1, multiclass
        clus
vv       DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  CLUS_1                             4                             149
  CLUS_2                            38                              80
  CLUS_3                             4                              31
D54V2, multiclass
        clus
vv       DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  CLUS_1                             2                              35
  CLUS_2                             9                              70
  CLUS_3                             6                              58
  CLUS_4                            22                              56
D54V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(12P13.31) MUTATED      3    3
  DEL PEAK 25(12P13.31) WILD-TYPE   19   18
        clus
vv       DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  CLUS_1                             3                              19
  CLUS_2                             3                              18
D54V4, multiclass
        clus
vv       DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                             1                               6
  CLUS_3                             3                              18
D54V5, multiclass
        clus
vv       DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  CLUS_1                            12                              77
  CLUS_2                             4                              51
  CLUS_3                            19                              73
D54V6, multiclass
        clus
vv       DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  CLUS_1                            12                              47
  CLUS_2                            15                              89
  CLUS_3                             8                              65

Clustering(55) Variable = Del Peak 26(13q14.2) mutation analysis
D55V1, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                            8                            145
  CLUS_2                           28                             90
  CLUS_3                            4                             31
D55V2, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                            8                             71
  CLUS_3                            4                             60
  CLUS_4                           17                             61
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(13Q14.2) MUTATED      5    2
  DEL PEAK 26(13Q14.2) WILD-TYPE   17   19
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            2                             19
D55V4, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            1                              6
  CLUS_3                            5                             16
D55V5, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                            4                             51
  CLUS_3                           13                             79
D55V6, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                            8                             51
  CLUS_2                           14                             90
  CLUS_3                            8                             65

Clustering(56) Variable = Del Peak 27(14q21.1) mutation analysis
D56V1, multiclass
        clus
vv       DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  CLUS_1                           12                            141
  CLUS_2                           47                             71
  CLUS_3                            8                             27
D56V2, multiclass
        clus
vv       DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                           12                             67
  CLUS_3                           13                             51
  CLUS_4                           26                             52
D56V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(14Q21.1) MUTATED      2    6
  DEL PEAK 27(14Q21.1) WILD-TYPE   20   15
        clus
vv       DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            6                             15
D56V4, multiclass
        clus
vv       DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            1                              6
  CLUS_3                            3                             18
D56V5, multiclass
        clus
vv       DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                           11                             44
  CLUS_3                           28                             64
D56V6, multiclass
        clus
vv       DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  CLUS_1                           21                             38
  CLUS_2                           17                             87
  CLUS_3                           14                             59

Clustering(57) Variable = Del Peak 28(14q32.33) mutation analysis
D57V1, multiclass
        clus
vv       DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  CLUS_1                            16                             137
  CLUS_2                            53                              65
  CLUS_3                            12                              23
D57V2, multiclass
        clus
vv       DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  CLUS_1                             9                              28
  CLUS_2                            15                              64
  CLUS_3                            14                              50
  CLUS_4                            30                              48
D57V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(14Q32.33) MUTATED      3    8
  DEL PEAK 28(14Q32.33) WILD-TYPE   19   13
        clus
vv       DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  CLUS_1                             3                              19
  CLUS_2                             8                              13
D57V4, multiclass
        clus
vv       DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                             3                               4
  CLUS_3                             4                              17
D57V5, multiclass
        clus
vv       DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  CLUS_1                            18                              71
  CLUS_2                            12                              43
  CLUS_3                            28                              64
D57V6, multiclass
        clus
vv       DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  CLUS_1                            20                              39
  CLUS_2                            23                              81
  CLUS_3                            15                              58

Clustering(58) Variable = Del Peak 29(15q11.2) mutation analysis
D58V1, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            7                            146
  CLUS_2                           54                             64
  CLUS_3                           12                             23
D58V2, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            5                             32
  CLUS_2                           17                             62
  CLUS_3                            7                             57
  CLUS_4                           34                             44
D58V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(15Q11.2) MUTATED      1    8
  DEL PEAK 29(15Q11.2) WILD-TYPE   21   13
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            1                             21
  CLUS_2                            8                             13
D58V4, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            0                              7
  CLUS_3                            2                             19
D58V5, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           18                             71
  CLUS_2                            7                             48
  CLUS_3                           31                             61
D58V6, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           26                             33
  CLUS_2                           21                             83
  CLUS_3                            9                             64

Clustering(59) Variable = Del Peak 30(15q15.1) mutation analysis
D59V1, multiclass
        clus
vv       DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  CLUS_1                            9                            144
  CLUS_2                           55                             63
  CLUS_3                           11                             24
D59V2, multiclass
        clus
vv       DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                           16                             63
  CLUS_3                            7                             57
  CLUS_4                           33                             45
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(15Q15.1) MUTATED      3    9
  DEL PEAK 30(15Q15.1) WILD-TYPE   19   12
        clus
vv       DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            9                             12
D59V4, multiclass
        clus
vv       DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            2                              5
  CLUS_3                            3                             18
D59V5, multiclass
        clus
vv       DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  CLUS_1                           21                             68
  CLUS_2                            7                             48
  CLUS_3                           29                             63
D59V6, multiclass
        clus
vv       DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  CLUS_1                           26                             33
  CLUS_2                           23                             81
  CLUS_3                            8                             65

Clustering(60) Variable = Del Peak 31(16p13.3) mutation analysis
D60V1, multiclass
        clus
vv       DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  CLUS_1                            6                            147
  CLUS_2                           43                             75
  CLUS_3                            3                             32
D60V2, multiclass
        clus
vv       DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  CLUS_1                            1                             36
  CLUS_2                           13                             66
  CLUS_3                            6                             58
  CLUS_4                           23                             55
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(16P13.3) MUTATED      4    3
  DEL PEAK 31(16P13.3) WILD-TYPE   18   18
        clus
vv       DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  CLUS_1                            4                             18
  CLUS_2                            3                             18
D60V4, multiclass
        clus
vv       DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            0                              7
  CLUS_3                            4                             17
D60V5, multiclass
        clus
vv       DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  CLUS_1                            7                             82
  CLUS_2                            6                             49
  CLUS_3                           21                             71
D60V6, multiclass
        clus
vv       DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  CLUS_1                           13                             46
  CLUS_2                           12                             92
  CLUS_3                            9                             64

Clustering(61) Variable = Del Peak 32(16q23.1) mutation analysis
D61V1, multiclass
        clus
vv       DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  CLUS_1                           25                            128
  CLUS_2                           64                             54
  CLUS_3                           15                             20
D61V2, multiclass
        clus
vv       DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           26                             53
  CLUS_3                           13                             51
  CLUS_4                           34                             44
D61V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q23.1) MUTATED      8   10
  DEL PEAK 32(16Q23.1) WILD-TYPE   14   11
        clus
vv       DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  CLUS_1                            8                             14
  CLUS_2                           10                             11
D61V4, multiclass
        clus
vv       DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            3                              4
  CLUS_3                            8                             13
D61V5, multiclass
        clus
vv       DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  CLUS_1                           29                             60
  CLUS_2                           14                             41
  CLUS_3                           30                             62
D61V6, multiclass
        clus
vv       DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  CLUS_1                           24                             35
  CLUS_2                           29                             75
  CLUS_3                           20                             53

Clustering(62) Variable = Del Peak 33(17p12) mutation analysis
D62V1, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                          7                          146
  CLUS_2                         82                           36
  CLUS_3                         14                           21
D62V2, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                          5                           32
  CLUS_2                         24                           55
  CLUS_3                         12                           52
  CLUS_4                         46                           32
D62V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED      5    9
  DEL PEAK 33(17P12) WILD-TYPE   17   12
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                          5                           17
  CLUS_2                          9                           12
D62V4, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                          6                            9
  CLUS_2                          3                            4
  CLUS_3                          5                           16
D62V5, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         31                           58
  CLUS_2                          8                           47
  CLUS_3                         39                           53
D62V6, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         33                           26
  CLUS_2                         32                           72
  CLUS_3                         13                           60

Clustering(63) Variable = Del Peak 34(17q24.3) mutation analysis
D63V1, multiclass
        clus
vv       DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  CLUS_1                            4                            149
  CLUS_2                           39                             79
  CLUS_3                            7                             28
D63V2, multiclass
        clus
vv       DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  CLUS_1                            1                             36
  CLUS_2                           15                             64
  CLUS_3                            6                             58
  CLUS_4                           16                             62
D63V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(17Q24.3) MUTATED      3    8
  DEL PEAK 34(17Q24.3) WILD-TYPE   19   13
        clus
vv       DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            8                             13
D63V4, multiclass
        clus
vv       DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            0                              7
  CLUS_3                            4                             17
D63V5, multiclass
        clus
vv       DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  CLUS_1                           12                             77
  CLUS_2                            3                             52
  CLUS_3                           21                             71
D63V6, multiclass
        clus
vv       DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  CLUS_1                           17                             42
  CLUS_2                           15                             89
  CLUS_3                            4                             69

Clustering(64) Variable = Del Peak 35(18q21.2) mutation analysis
D64V1, multiclass
        clus
vv       DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  CLUS_1                           26                            127
  CLUS_2                           83                             35
  CLUS_3                           15                             20
D64V2, multiclass
        clus
vv       DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  CLUS_1                           15                             22
  CLUS_2                           29                             50
  CLUS_3                           13                             51
  CLUS_4                           45                             33
D64V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(18Q21.2) MUTATED     10   11
  DEL PEAK 35(18Q21.2) WILD-TYPE   12   10
        clus
vv       DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  CLUS_1                           10                             12
  CLUS_2                           11                             10
D64V4, multiclass
        clus
vv       DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  CLUS_1                           10                              5
  CLUS_2                            2                              5
  CLUS_3                            9                             12
D64V5, multiclass
        clus
vv       DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  CLUS_1                           36                             53
  CLUS_2                           16                             39
  CLUS_3                           43                             49
D64V6, multiclass
        clus
vv       DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  CLUS_1                           33                             26
  CLUS_2                           39                             65
  CLUS_3                           23                             50

Clustering(65) Variable = Del Peak 36(18q23) mutation analysis
D65V1, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         24                          129
  CLUS_2                         79                           39
  CLUS_3                         13                           22
D65V2, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         14                           23
  CLUS_2                         25                           54
  CLUS_3                         11                           53
  CLUS_4                         44                           34
D65V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 36(18Q23) MUTATED     10   10
  DEL PEAK 36(18Q23) WILD-TYPE   12   11
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         10                           12
  CLUS_2                         10                           11
D65V4, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                          8                            7
  CLUS_2                          3                            4
  CLUS_3                          9                           12
D65V5, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         30                           59
  CLUS_2                         16                           39
  CLUS_3                         44                           48
D65V6, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         33                           26
  CLUS_2                         35                           69
  CLUS_3                         22                           51

Clustering(66) Variable = Del Peak 37(19p13.3) mutation analysis
D66V1, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                            5                            148
  CLUS_2                           75                             43
  CLUS_3                           11                             24
D66V2, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                           20                             59
  CLUS_3                            5                             59
  CLUS_4                           46                             32
D66V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(19P13.3) MUTATED      6    9
  DEL PEAK 37(19P13.3) WILD-TYPE   16   12
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            9                             12
D66V4, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            1                              6
  CLUS_3                            7                             14
D66V5, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           22                             67
  CLUS_2                            7                             48
  CLUS_3                           40                             52
D66V6, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           36                             23
  CLUS_2                           23                             81
  CLUS_3                           10                             63

Clustering(67) Variable = Del Peak 38(19q13.11) mutation analysis
D67V1, multiclass
        clus
vv       DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  CLUS_1                             2                             151
  CLUS_2                            31                              87
  CLUS_3                             7                              28
D67V2, multiclass
        clus
vv       DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  CLUS_1                             0                              37
  CLUS_2                            13                              66
  CLUS_3                             2                              62
  CLUS_4                            17                              61
D67V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 38(19Q13.11) MUTATED      1    5
  DEL PEAK 38(19Q13.11) WILD-TYPE   21   16
        clus
vv       DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  CLUS_1                             1                              21
  CLUS_2                             5                              16
D67V4, multiclass
        clus
vv       DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                             0                               7
  CLUS_3                             2                              19
D67V5, multiclass
        clus
vv       DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  CLUS_1                            11                              78
  CLUS_2                             1                              54
  CLUS_3                            18                              74
D67V6, multiclass
        clus
vv       DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  CLUS_1                            18                              41
  CLUS_2                             7                              97
  CLUS_3                             5                              68

Clustering(68) Variable = Del Peak 39(20p12.1) mutation analysis
D68V1, multiclass
        clus
vv       DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  CLUS_1                           10                            143
  CLUS_2                           40                             78
  CLUS_3                            0                             35
D68V2, multiclass
        clus
vv       DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  CLUS_1                            4                             33
  CLUS_2                           14                             65
  CLUS_3                            2                             62
  CLUS_4                           24                             54
D68V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(20P12.1) MUTATED      3    3
  DEL PEAK 39(20P12.1) WILD-TYPE   19   18
        clus
vv       DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            3                             18
D68V4, multiclass
        clus
vv       DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            1                              6
  CLUS_3                            2                             19
D68V5, multiclass
        clus
vv       DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  CLUS_1                            7                             82
  CLUS_2                            6                             49
  CLUS_3                           20                             72
D68V6, multiclass
        clus
vv       DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  CLUS_1                           15                             44
  CLUS_2                           12                             92
  CLUS_3                            6                             67

Clustering(69) Variable = Del Peak 40(20p12.1) mutation analysis
D69V1, multiclass
        clus
vv       DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  CLUS_1                           10                            143
  CLUS_2                           40                             78
  CLUS_3                            0                             35
D69V2, multiclass
        clus
vv       DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  CLUS_1                            4                             33
  CLUS_2                           14                             65
  CLUS_3                            2                             62
  CLUS_4                           24                             54
D69V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(20P12.1) MUTATED      3    3
  DEL PEAK 40(20P12.1) WILD-TYPE   19   18
        clus
vv       DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            3                             18
D69V4, multiclass
        clus
vv       DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            1                              6
  CLUS_3                            2                             19
D69V5, multiclass
        clus
vv       DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  CLUS_1                            7                             82
  CLUS_2                            6                             49
  CLUS_3                           20                             72
D69V6, multiclass
        clus
vv       DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  CLUS_1                           15                             44
  CLUS_2                           12                             92
  CLUS_3                            6                             67

Clustering(70) Variable = Del Peak 41(21q11.2) mutation analysis
D70V1, multiclass
        clus
vv       DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  CLUS_1                           17                            136
  CLUS_2                           66                             52
  CLUS_3                           14                             21
D70V2, multiclass
        clus
vv       DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  CLUS_1                            4                             33
  CLUS_2                           26                             53
  CLUS_3                           15                             49
  CLUS_4                           37                             41
D70V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(21Q11.2) MUTATED      5    7
  DEL PEAK 41(21Q11.2) WILD-TYPE   17   14
        clus
vv       DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            7                             14
D70V4, multiclass
        clus
vv       DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            2                              5
  CLUS_3                            5                             16
D70V5, multiclass
        clus
vv       DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  CLUS_1                           21                             68
  CLUS_2                           13                             42
  CLUS_3                           39                             53
D70V6, multiclass
        clus
vv       DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  CLUS_1                           23                             36
  CLUS_2                           31                             73
  CLUS_3                           19                             54

Clustering(71) Variable = Del Peak 42(21q22.13) mutation analysis
D71V1, multiclass
        clus
vv       DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  CLUS_1                            18                             135
  CLUS_2                            68                              50
  CLUS_3                            16                              19
D71V2, multiclass
        clus
vv       DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  CLUS_1                             4                              33
  CLUS_2                            26                              53
  CLUS_3                            16                              48
  CLUS_4                            37                              41
D71V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(21Q22.13) MUTATED      6   10
  DEL PEAK 42(21Q22.13) WILD-TYPE   16   11
        clus
vv       DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  CLUS_1                             6                              16
  CLUS_2                            10                              11
D71V4, multiclass
        clus
vv       DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  CLUS_1                             7                               8
  CLUS_2                             3                               4
  CLUS_3                             6                              15
D71V5, multiclass
        clus
vv       DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  CLUS_1                            24                              65
  CLUS_2                            13                              42
  CLUS_3                            37                              55
D71V6, multiclass
        clus
vv       DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  CLUS_1                            24                              35
  CLUS_2                            32                              72
  CLUS_3                            18                              55

Clustering(72) Variable = Del Peak 43(22q13.31) mutation analysis
D72V1, multiclass
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  CLUS_1                            12                             141
  CLUS_2                            69                              49
  CLUS_3                            10                              25
D72V2, multiclass
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  CLUS_1                             2                              35
  CLUS_2                            23                              56
  CLUS_3                            11                              53
  CLUS_4                            38                              40
D72V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) MUTATED      8    8
  DEL PEAK 43(22Q13.31) WILD-TYPE   14   13
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  CLUS_1                             8                              14
  CLUS_2                             8                              13
D72V4, multiclass
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  CLUS_1                             5                              10
  CLUS_2                             3                               4
  CLUS_3                             8                              13
D72V5, multiclass
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  CLUS_1                            23                              66
  CLUS_2                             8                              47
  CLUS_3                            37                              55
D72V6, multiclass
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  CLUS_1                            29                              30
  CLUS_2                            27                              77
  CLUS_3                            12                              61

Clustering(73) Variable = Del Peak 44(Xp22.2) mutation analysis
D73V1, multiclass
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  CLUS_1                           7                           146
  CLUS_2                          45                            73
  CLUS_3                           0                            35
D73V2, multiclass
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  CLUS_1                           0                            37
  CLUS_2                          13                            66
  CLUS_3                           9                            55
  CLUS_4                          23                            55
D73V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) MUTATED      3    4
  DEL PEAK 44(XP22.2) WILD-TYPE   19   17
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           4                            17
D73V4, multiclass
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           2                             5
  CLUS_3                           3                            18
D73V5, multiclass
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  CLUS_1                          16                            73
  CLUS_2                           4                            51
  CLUS_3                          17                            75
D73V6, multiclass
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  CLUS_1                          17                            42
  CLUS_2                          13                            91
  CLUS_3                           7                            66

Clustering(74) Variable = Del Peak 45(Xp21.1) mutation analysis
D74V1, multiclass
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  CLUS_1                           3                           150
  CLUS_2                          40                            78
  CLUS_3                           2                            33
D74V2, multiclass
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  CLUS_1                           0                            37
  CLUS_2                          14                            65
  CLUS_3                           6                            58
  CLUS_4                          16                            62
D74V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) MUTATED      3    6
  DEL PEAK 45(XP21.1) WILD-TYPE   19   15
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           6                            15
D74V4, multiclass
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           3                             4
  CLUS_3                           3                            18
D74V5, multiclass
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  CLUS_1                          17                            72
  CLUS_2                           2                            53
  CLUS_3                          13                            79
D74V6, multiclass
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  CLUS_1                          13                            46
  CLUS_2                          13                            91
  CLUS_3                           6                            67

Clustering(75) Variable = Del Peak 46(Xq21.33) mutation analysis
D75V1, multiclass
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  CLUS_1                            4                            149
  CLUS_2                           29                             89
  CLUS_3                            5                             30
D75V2, multiclass
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  CLUS_1                            1                             36
  CLUS_2                           10                             69
  CLUS_3                            2                             62
  CLUS_4                           16                             62
D75V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) MUTATED      3    5
  DEL PEAK 46(XQ21.33) WILD-TYPE   19   16
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            5                             16
D75V4, multiclass
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            2                              5
  CLUS_3                            3                             18
D75V5, multiclass
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  CLUS_1                           12                             77
  CLUS_2                            2                             53
  CLUS_3                           15                             77
D75V6, multiclass
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  CLUS_1                           14                             45
  CLUS_2                           10                             94
  CLUS_3                            5                             68
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"          "MRNASEQ_CNMF" 
                     V4                      V5                      V6 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
