		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(Xq22.3)	16 (3%)	454	2.56e-06	0.000486	0.46065	1	0.85601	1	0.12945	1	0.042178	1	0.036067	1	0.070354	1	0.046767	1
Del Peak  2(2p23.1)	12 (3%)	458	4.9398e-10	9.88e-08	2.8946e-05	0.00515	0.7724	1	0.017869	1	1.8261e-05	0.00341	1.9254e-05	0.00356	1.1918e-06	0.000229	5.0897e-07	9.87e-05
Del Peak  3(2q35)	11 (2%)	459	1.0438e-11	2.1e-09	2.4711e-05	0.00442	0.56155	1	0.0028747	0.425	1.8261e-05	0.00341	1.9254e-05	0.00356	1.1918e-06	0.000229	5.0897e-07	9.87e-05
Del Peak  4(5p15.2)	3 (1%)	467	0.2612	1	0.72795	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Del Peak  6(6q22.31)	6 (1%)	464	0.00042653	0.0712	0.0054735	0.772	0.037905	1	0.79799	1	0.01726	1	0.009332	1	0.0087745	1	0.007978	1
Del Peak  8(7q34)	4 (1%)	466	0.64552	1	0.63493	1	NA	NA	NA	NA	0.74667	1	0.58905	1	1	1	1	1
Del Peak  9(8p12)	4 (1%)	466	2.3103e-05	0.00416	0.047358	1	NA	NA	NA	NA	0.037083	1	0.034594	1	0.0076107	1	0.0056372	0.789
Del Peak 10(8q24.22)	7 (1%)	463	5.4335e-05	0.00962	0.0024689	0.373	0.83694	1	0.05495	1	0.0021339	0.324	0.0012153	0.196	0.0001846	0.0319	0.00010843	0.019
Del Peak 11(9q21.13)	22 (5%)	448	4.3074e-14	8.7e-12	0.15463	1	0.18242	1	0.013559	1	0.24495	1	0.78838	1	0.028223	1	0.054243	1
Del Peak 12(10q21.2)	11 (2%)	459	0.00078784	0.13	0.066788	1	0.16234	1	1	1	0.051292	1	0.14798	1	0.37303	1	0.60908	1
Del Peak 13(10q23.31)	11 (2%)	459	6.4015e-05	0.0113	0.018448	1	0.033562	1	0.064148	1	0.0042431	0.611	0.0011544	0.187	0.031524	1	0.013606	1
Del Peak 14(11p15.1)	6 (1%)	464	9.2758e-08	1.85e-05	0.020218	1	0.49868	1	1	1	0.049471	1	0.16621	1	0.025593	1	0.036075	1
Del Peak 15(13q12.3)	15 (3%)	455	0.025755	1	0.0012313	0.197	0.38844	1	0.43998	1	0.0096325	1	0.044841	1	0.054128	1	0.025793	1
Del Peak 16(13q14.3)	18 (4%)	452	0.0071688	0.989	0.031817	1	0.090753	1	1	1	0.0103	1	0.02493	1	0.027916	1	0.02095	1
Del Peak 17(15q25.3)	7 (1%)	463	0.0013417	0.213	0.032029	1	0.44371	1	0.081715	1	0.084076	1	0.067174	1	0.0046038	0.658	0.0024728	0.373
Del Peak 19(16q23.3)	6 (1%)	464	0.051766	1	0.12646	1	0.44371	1	0.10254	1	0.12701	1	0.1114	1	0.19432	1	0.29206	1
Del Peak 20(17p13.1)	8 (2%)	462	0.0021003	0.322	0.88397	1	1	1	1	1	0.71011	1	0.64182	1	0.29389	1	0.30841	1
Del Peak 21(18p11.21)	4 (1%)	466	0.00024072	0.0414	0.19136	1	1	1	0.36851	1	0.2424	1	0.089285	1	0.11087	1	0.041416	1
Del Peak 22(18q22.2)	5 (1%)	465	0.0015058	0.233	0.061613	1	1	1	0.25562	1	0.12004	1	0.042664	1	0.039488	1	0.013383	1
Del Peak 23(19p13.2)	6 (1%)	464	0.0049759	0.707	0.0010152	0.165	0.68193	1	0.25562	1	0.0066356	0.922	0.002594	0.387	0.00064147	0.106	0.00040735	0.0684
Del Peak 26(21q21.1)	8 (2%)	462	1.2897e-05	0.00242	0.17155	1	0.14723	1	0.2062	1	0.28883	1	0.45908	1	0.051578	1	0.086605	1
Del Peak 27(22q13.1)	81 (17%)	389	5.8001e-86	1.19e-83	0.00032063	0.0548	0.20537	1	0.079474	1	3.1062e-07	6.12e-05	1.9956e-05	0.00365	0.0037073	0.545	0.0014449	0.228
Del Peak 28(22q13.2)	81 (17%)	389	5.8001e-86	1.19e-83	0.00032063	0.0548	0.20537	1	0.079474	1	3.1062e-07	6.12e-05	1.9956e-05	0.00365	0.0037073	0.545	0.0014449	0.228
Del Peak 29(22q13.31)	81 (17%)	389	5.8001e-86	1.19e-83	0.00032063	0.0548	0.20537	1	0.079474	1	3.1062e-07	6.12e-05	1.9956e-05	0.00365	0.0037073	0.545	0.0014449	0.228
Del Peak 30(22q13.32)	82 (17%)	388	4.4735e-84	9.08e-82	0.00016217	0.0282	0.20537	1	0.079474	1	1.6434e-07	3.25e-05	1.1745e-05	0.00222	0.0020914	0.322	0.0008457	0.139
Del Peak 31(Xq22.1)	6 (1%)	464	0.079298	1	0.43655	1	0.099343	1	0.11999	1	0.67141	1	0.8608	1	0.5224	1	0.38585	1
Del Peak 32(Xq22.3)	4 (1%)	466	0.056826	1	0.047358	1	0.28073	1	0.36851	1	0.12903	1	0.39981	1	0.11087	1	0.041416	1
