# Created: Tue Apr 09 10:08:25 EDT 2013 by cgaadm_deadline
# Job: 376244    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: Correlate_Cluster_cnvs_onlysig urn:lsid:broadinstitute.org:cancer.genome.analysis:00507:2
# Parameters: 
#    cluster.label.file = all_lesions.conf_99.cnv.cluster.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/376243/all_lesions.conf_99.cnv.cluster.txt
#    clinical.info.file = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/THCA-TP/2909296/1.GDAC_mergedClustering.Finished/THCA-TP.transferedmergedcluster.txt
#    features.used = ALL
#    filter.cluster.smaller.than = 3
#    output.name = THCA-TP
#    figure.height = 5
#    figure.width = 9
#    survival.legend.position = OUT
#    pvalue.cutoff = 1
#    qvalue.cutoff = 0.25
#    make.figure = ONLYSIG
#    nozzle.ver = Nozzle.R1
#    options = MUTSIG
#    report.title = 
#    job.description = 
