Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	broad_values_by_arm.mutsig.cluster.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D22V13.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D26V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D31V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D24V13.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D13V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D18V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D3V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D14V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D22V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D17V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D2V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D29V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D5V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D6V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D15V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D12V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D7V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D4V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D11V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D25V13.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D28V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D30V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D19V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D16V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D21V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D9V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D10V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D23V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D16V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	broad_values_by_arm.mutsig.cluster.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D22V13.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D26V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D31V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D24V13.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D13V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D18V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D3V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D14V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D22V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D17V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D2V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D29V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D5V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D6V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D15V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D12V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D7V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D4V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D11V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D25V13.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D28V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D30V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D19V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D16V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D21V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D9V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D10V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D23V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	D16V11.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	THCA-TP.clin.merged.picked.txt	gdac.broadinstitute.org_THCA-TP.Clinical_Pick_Tier1.Level_4.2013032600.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:42	Correlate_Clinical_vs_CopyNumber_Arm_2013032600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_THCA-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013032600.0.0	yes
