Kidney Renal Clear Cell Carcinoma: Clustering of mRNA expression: consensus hierarchical
(primary solid tumor cohort)
Maintained by Hailei Zhang (Broad Institute)
- Overview
+ Introduction
- Summary

The 1500 most variable genes were selected. Consensus average linkage hierarchical clustering of 72 samples and 1500 genes identified 3 subtypes with the stability of the clustering increasing for k = 2 to k = 8 and the average silhouette width calculation for selecting the robust clusters.

- Results
+ Silhouette width of each sample in robust cluster
+ Gene expression patterns of molecular subtype
+ Consensus and correlation matrix
+ Samples assignment with silhouette width
+ Marker genes of each subtype
+ Methods & Data