Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	3 (2%)	184	0.067806	1	0.048926	1	NA	NA	NA	NA	NA	NA	NA	NA
1q gain	5 (3%)	182	0.1391	1	0.27529	1	0.55124	1	0.30047	1	0.53005	1	0.82231	1
3p gain	5 (3%)	182	0.25426	1	0.51869	1	0.063709	1	0.36154	1	0.15012	1	0.29015	1
3q gain	6 (3%)	181	0.13818	1	0.66401	1	0.019812	1	0.0056122	0.864	0.26156	1	0.058782	1
7p gain	16 (9%)	171	0.00028122	0.045	0.07751	1	0.10944	1	0.13938	1	0.42906	1	0.21792	1
7q gain	14 (7%)	173	0.0022637	0.355	0.10069	1	0.18203	1	0.22732	1	0.6628	1	0.37629	1
8p gain	8 (4%)	179	0.010318	1	0.34739	1	0.39637	1	0.093491	1	0.90739	1	0.87499	1
8q gain	19 (10%)	168	5.5683e-05	0.00902	0.46175	1	0.085622	1	0.24348	1	0.26234	1	0.11214	1
9p gain	3 (2%)	184	0.067806	1	0.48269	1	0.64438	1	0.62533	1	0.45827	1	0.39328	1
9q gain	6 (3%)	181	0.076152	1	0.32555	1	0.13177	1	0.22898	1	0.6511	1	0.84504	1
10q gain	4 (2%)	183	0.27765	1	0.56562	1	0.21118	1	0.30047	1	0.53005	1	1	1
12q gain	3 (2%)	184	0.20104	1	0.26945	1	NA	NA	NA	NA	NA	NA	NA	NA
16p gain	3 (2%)	184	0.59762	1	0.78281	1	0.77562	1	0.26108	1	0.45827	1	0.77397	1
16q gain	3 (2%)	184	0.59762	1	0.78281	1	0.77562	1	0.26108	1	0.45827	1	0.77397	1
5q loss	5 (3%)	182	0.013825	1	0.064663	1	0.063709	1	0.36154	1	0.11388	1	1	1
6q loss	7 (4%)	180	0.015665	1	0.11615	1	0.071424	1	0.093491	1	0.36531	1	0.12466	1
8p loss	47 (25%)	140	0.0027811	0.434	0.00012943	0.0208	0.0032569	0.505	0.03313	1	0.00049195	0.0782	0.6853	1
8q loss	4 (2%)	183	0.27765	1	0.38946	1	0.32899	1	0.38811	1	0.29531	1	0.39458	1
10p loss	5 (3%)	182	0.43857	1	0.39562	1	0.55124	1	0.30047	1	0.26156	1	0.027682	1
10q loss	5 (3%)	182	0.43857	1	0.73528	1	0.62481	1	0.86573	1	0.57038	1	1	1
12p loss	10 (5%)	177	0.19754	1	0.019746	1	0.13928	1	0.012348	1	0.053909	1	0.24599	1
13q loss	12 (6%)	175	0.0014499	0.229	0.21443	1	0.028377	1	0.034884	1	0.24813	1	0.49589	1
16q loss	24 (13%)	163	3.6601e-05	0.00597	0.039066	1	0.17983	1	0.19855	1	0.17349	1	0.61465	1
17p loss	21 (11%)	166	6.4272e-06	0.00106	0.096724	1	0.099643	1	0.017079	1	0.64129	1	0.42529	1
18p loss	18 (10%)	169	2.5168e-05	0.00413	0.21307	1	0.36285	1	0.2569	1	0.085806	1	0.018749	1
18q loss	24 (13%)	163	1.1029e-08	1.83e-06	0.16493	1	0.088629	1	0.2193	1	0.087047	1	0.066793	1
20p loss	5 (3%)	182	0.3632	1	0.064663	1	0.21118	1	0.13295	1	0.0057454	0.879	0.016054	1
21q loss	4 (2%)	183	0.27765	1	0.56562	1	0.32899	1	0.096344	1	0.26584	1	1	1
22q loss	5 (3%)	182	0.064646	1	0.39562	1	0.37713	1	0.45235	1	0.41852	1	0.60054	1