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ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/mutsig2cluster_new.4.1619/mutsig2cluster.gp.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/mutsig2cluster_new.4.1619/", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA-TP/2981243/BRCA-TP.sample_sig_gene_table.txt", "-iM=", "-iG=", "-iF=0.01", "-oT=")
[1] 0.01
> q(save="no")
lsf stdout
Sender: LSF System <lsf@node1425>
Subject: Job 3690221: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -DR_HOME=/broad/software/free/Linux/redhat_5_x86_64/pkgs/r_2.10.1 -Dr_flags=--vanilla -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/RunR/ RunR /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/mutsig2cluster_new.4.1619/mutsig2cluster.gp.R main /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/mutsig2cluster_new.4.1619/ -iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA-TP/2981243/BRCA-TP.sample_sig_gene_table.txt -iM= -iG= -iF=0.01 -oT= >> cmd.out> in cluster cgalsf Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -DR_HOME=/broad/software/free/Linux/redhat_5_x86_64/pkgs/r_2.10.1 -Dr_flags=--vanilla -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/RunR/ RunR /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/mutsig2cluster_new.4.1619/mutsig2cluster.gp.R main /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/mutsig2cluster_new.4.1619/ -iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA-TP/2981243/BRCA-TP.sample_sig_gene_table.txt -iM= -iG= -iF=0.01 -oT= >> cmd.out> was submitted from host <node1547> by user <cgaadm> in cluster <cgalsf>.
Job was executed on host(s) <node1425>, in queue <cga>, as user <cgaadm> in cluster <cgalsf>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/397705> was used as the working directory.
Started at Thu May  2 19:43:02 2013
Results reported at Thu May  2 19:43:05 2013

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -DR_HOME=/broad/software/free/Linux/redhat_5_x86_64/pkgs/r_2.10.1 -Dr_flags=--vanilla -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/RunR/ RunR /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/mutsig2cluster_new.4.1619/mutsig2cluster.gp.R main /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/mutsig2cluster_new.4.1619/ -iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA-TP/2981243/BRCA-TP.sample_sig_gene_table.txt -iM= -iG= -iF=0.01 -oT= >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :      1.72 sec.
    Max Memory :         3 MB
    Max Swap   :        37 MB

    Max Processes  :         1
    Max Threads    :         1

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
