GDAC_MergedClusteringPipeline Execution Log 10:02 PM Thu May 2, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140430/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/COADREAD-TP/3140429/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3142918/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140968/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile COADREAD-TP
GDAC_mergedClustering1 PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140369/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/3140371/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140374/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/3140372/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140427/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/3140426/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt
Execution Times:
Submitted: 22:02:19 02-05-13
Completed:
Elapsed: 00 hrs 13 mins 11 secs

step 1. GDAC_mergedClustering [id: 397958] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140430/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/COADREAD-TP/3140429/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3142918/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140968/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
mergedfile COADREAD-TP
PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140369/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/3140371/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140374/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/3140372/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/3140427/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/3140426/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt
Output Files:
 COADREAD-TP.transferedmergedcluster.txt
 COADREAD-TP.mergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 22:02:19 02-05-13
Completed: 22:02:41 02-05-13
Elapsed: 00 hrs 00 mins 21 secs

step 2. GDAC_mergedReport [id: 397959]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster COADREAD-TP.transferedmergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 22:02:19 02-05-13
Completed: 22:15:29 02-05-13
Elapsed: 00 hrs 13 mins 09 secs