This pipeline computes the correlation between significantly recurrent gene mutations and selected clinical features.
Testing the association between mutation status of 209 genes and 11 clinical features across 224 patients, 29 significant findings detected with Q value < 0.25.
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PIK3CA mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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BRAF mutation correlated to 'HISTOLOGICAL.TYPE'.
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KRTAP5-5 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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NRXN1 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
CNTN6 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
CDH2 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
CNBD1 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
ERBB4 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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ACVR2A mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
CDH9 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
GRIK3 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
GGT1 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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PCDHA10 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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FAM5C mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
IFT80 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
DACH2 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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PCDH11X mutation correlated to 'Time to Death'.
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BTNL8 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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NXF5 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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SPATA17 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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ZCWPW2 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
-
CDH12 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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ZNF167 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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ZFPM2 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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DPY19L1 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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TMPRSS13 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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B2M mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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RNASE11 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
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COL6A6 mutation correlated to 'NUMBER.OF.LYMPH.NODES'.
Table 1. Get Full Table Overview of the association between mutation status of 209 genes and 11 clinical features. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 29 significant findings detected.
Clinical Features |
Time to Death |
AGE |
PRIMARY SITE OF DISEASE |
GENDER |
HISTOLOGICAL TYPE |
PATHOLOGY T |
PATHOLOGY N |
PATHOLOGICSPREAD(M) |
TUMOR STAGE |
COMPLETENESS OF RESECTION |
NUMBER OF LYMPH NODES |
||
nMutated (%) | nWild-Type | logrank test | t-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | t-test | |
PIK3CA | 33 (15%) | 191 |
0.767 (1.00) |
0.0855 (1.00) |
0.227 (1.00) |
0.851 (1.00) |
0.0168 (1.00) |
0.913 (1.00) |
0.0235 (1.00) |
0.133 (1.00) |
0.0358 (1.00) |
0.303 (1.00) |
1.26e-05 (0.0285) |
BRAF | 22 (10%) | 202 |
0.912 (1.00) |
0.0839 (1.00) |
0.0261 (1.00) |
0.0702 (1.00) |
2e-06 (0.00451) |
0.191 (1.00) |
0.904 (1.00) |
0.395 (1.00) |
0.576 (1.00) |
0.611 (1.00) |
0.589 (1.00) |
KRTAP5-5 | 4 (2%) | 220 |
0.882 (1.00) |
0.588 (1.00) |
1 (1.00) |
0.305 (1.00) |
1 (1.00) |
0.478 (1.00) |
1 (1.00) |
0.151 (1.00) |
1 (1.00) |
3.21e-11 (7.29e-08) |
|
NRXN1 | 20 (9%) | 204 |
0.682 (1.00) |
0.907 (1.00) |
0.133 (1.00) |
0.819 (1.00) |
0.594 (1.00) |
0.192 (1.00) |
0.0571 (1.00) |
0.53 (1.00) |
0.134 (1.00) |
0.604 (1.00) |
2.98e-05 (0.0671) |
CNTN6 | 17 (8%) | 207 |
0.45 (1.00) |
0.161 (1.00) |
0.102 (1.00) |
0.206 (1.00) |
0.386 (1.00) |
0.124 (1.00) |
0.135 (1.00) |
0.206 (1.00) |
0.165 (1.00) |
0.0753 (1.00) |
9.11e-05 (0.205) |
CDH2 | 16 (7%) | 208 |
0.592 (1.00) |
0.302 (1.00) |
0.781 (1.00) |
0.445 (1.00) |
0.703 (1.00) |
0.306 (1.00) |
0.03 (1.00) |
0.0244 (1.00) |
0.00766 (1.00) |
0.376 (1.00) |
8.45e-06 (0.0191) |
CNBD1 | 7 (3%) | 217 |
0.525 (1.00) |
0.617 (1.00) |
0.679 (1.00) |
0.712 (1.00) |
0.796 (1.00) |
0.735 (1.00) |
0.436 (1.00) |
0.61 (1.00) |
0.43 (1.00) |
0.637 (1.00) |
5.88e-05 (0.132) |
ERBB4 | 18 (8%) | 206 |
0.0646 (1.00) |
0.686 (1.00) |
0.595 (1.00) |
0.624 (1.00) |
0.615 (1.00) |
0.0896 (1.00) |
0.0133 (1.00) |
0.206 (1.00) |
0.0527 (1.00) |
0.389 (1.00) |
5.02e-08 (0.000114) |
ACVR2A | 9 (4%) | 215 |
0.271 (1.00) |
0.454 (1.00) |
0.282 (1.00) |
0.0902 (1.00) |
0.717 (1.00) |
0.9 (1.00) |
0.352 (1.00) |
1 (1.00) |
0.682 (1.00) |
1 (1.00) |
3.99e-08 (9.03e-05) |
CDH9 | 15 (7%) | 209 |
0.0266 (1.00) |
0.218 (1.00) |
0.766 (1.00) |
0.6 (1.00) |
0.815 (1.00) |
0.145 (1.00) |
0.0166 (1.00) |
0.717 (1.00) |
0.00616 (1.00) |
0.366 (1.00) |
1.74e-10 (3.95e-07) |
GRIK3 | 17 (8%) | 207 |
0.754 (1.00) |
0.0446 (1.00) |
0.283 (1.00) |
0.135 (1.00) |
0.617 (1.00) |
0.852 (1.00) |
0.135 (1.00) |
1 (1.00) |
0.159 (1.00) |
1 (1.00) |
0.000109 (0.246) |
GGT1 | 3 (1%) | 221 |
0.966 (1.00) |
0.555 (1.00) |
0.607 (1.00) |
0.698 (1.00) |
0.778 (1.00) |
1 (1.00) |
0.748 (1.00) |
1 (1.00) |
3.24e-11 (7.36e-08) |
||
PCDHA10 | 10 (4%) | 214 |
0.096 (1.00) |
0.474 (1.00) |
0.727 (1.00) |
0.525 (1.00) |
0.282 (1.00) |
0.0532 (1.00) |
0.139 (1.00) |
1 (1.00) |
0.595 (1.00) |
1 (1.00) |
3.1e-07 (7e-04) |
FAM5C | 13 (6%) | 211 |
0.0736 (1.00) |
0.51 (1.00) |
0.759 (1.00) |
0.153 (1.00) |
0.51 (1.00) |
0.0974 (1.00) |
0.0339 (1.00) |
0.267 (1.00) |
0.115 (1.00) |
0.458 (1.00) |
2.7e-10 (6.12e-07) |
IFT80 | 10 (4%) | 214 |
0.945 (1.00) |
0.689 (1.00) |
1 (1.00) |
1 (1.00) |
0.622 (1.00) |
0.383 (1.00) |
0.139 (1.00) |
0.393 (1.00) |
0.246 (1.00) |
0.653 (1.00) |
8.54e-10 (1.94e-06) |
DACH2 | 12 (5%) | 212 |
0.365 (1.00) |
0.551 (1.00) |
1 (1.00) |
0.557 (1.00) |
0.94 (1.00) |
0.0578 (1.00) |
0.199 (1.00) |
1 (1.00) |
0.893 (1.00) |
1 (1.00) |
5.01e-05 (0.113) |
PCDH11X | 14 (6%) | 210 |
6.96e-05 (0.157) |
0.546 (1.00) |
0.559 (1.00) |
0.787 (1.00) |
0.611 (1.00) |
0.0393 (1.00) |
0.0862 (1.00) |
0.269 (1.00) |
0.233 (1.00) |
0.113 (1.00) |
0.011 (1.00) |
BTNL8 | 3 (1%) | 221 |
0.0123 (1.00) |
0.555 (1.00) |
0.607 (1.00) |
0.698 (1.00) |
0.778 (1.00) |
1 (1.00) |
0.748 (1.00) |
1 (1.00) |
3.24e-11 (7.36e-08) |
||
NXF5 | 7 (3%) | 217 |
0.261 (1.00) |
0.171 (1.00) |
0.44 (1.00) |
0.263 (1.00) |
0.558 (1.00) |
0.268 (1.00) |
0.143 (1.00) |
0.61 (1.00) |
0.15 (1.00) |
0.637 (1.00) |
3.11e-11 (7.07e-08) |
SPATA17 | 9 (4%) | 215 |
0.525 (1.00) |
0.735 (1.00) |
0.725 (1.00) |
0.74 (1.00) |
0.0298 (1.00) |
0.0106 (1.00) |
0.197 (1.00) |
0.392 (1.00) |
0.388 (1.00) |
0.653 (1.00) |
1.4e-06 (0.00317) |
ZCWPW2 | 7 (3%) | 217 |
0.441 (1.00) |
0.346 (1.00) |
0.44 (1.00) |
0.712 (1.00) |
0.555 (1.00) |
0.0501 (1.00) |
0.143 (1.00) |
1 (1.00) |
0.378 (1.00) |
0.593 (1.00) |
3.11e-11 (7.07e-08) |
CDH12 | 13 (6%) | 211 |
0.398 (1.00) |
0.0595 (1.00) |
0.543 (1.00) |
0.777 (1.00) |
0.815 (1.00) |
0.223 (1.00) |
0.0339 (1.00) |
0.267 (1.00) |
0.145 (1.00) |
0.469 (1.00) |
1.32e-08 (2.98e-05) |
ZNF167 | 7 (3%) | 217 |
0.376 (1.00) |
0.538 (1.00) |
0.679 (1.00) |
1 (1.00) |
0.796 (1.00) |
0.239 (1.00) |
0.436 (1.00) |
1 (1.00) |
0.183 (1.00) |
1 (1.00) |
1.5e-08 (3.4e-05) |
ZFPM2 | 6 (3%) | 218 |
0.376 (1.00) |
0.193 (1.00) |
0.374 (1.00) |
0.215 (1.00) |
0.437 (1.00) |
0.17 (1.00) |
0.535 (1.00) |
0.609 (1.00) |
0.666 (1.00) |
1 (1.00) |
1.03e-07 (0.000233) |
DPY19L1 | 5 (2%) | 219 |
0.405 (1.00) |
0.61 (1.00) |
0.643 (1.00) |
0.672 (1.00) |
0.639 (1.00) |
0.0723 (1.00) |
0.217 (1.00) |
1 (1.00) |
0.273 (1.00) |
1 (1.00) |
3.18e-11 (7.22e-08) |
TMPRSS13 | 4 (2%) | 220 |
0.26 (1.00) |
1 (1.00) |
0.351 (1.00) |
1 (1.00) |
0.237 (1.00) |
0.478 (1.00) |
1 (1.00) |
0.458 (1.00) |
1 (1.00) |
3.21e-11 (7.29e-08) |
|
B2M | 5 (2%) | 219 |
0.375 (1.00) |
0.851 (1.00) |
0.643 (1.00) |
0.195 (1.00) |
0.783 (1.00) |
0.127 (1.00) |
0.692 (1.00) |
1 (1.00) |
0.86 (1.00) |
1 (1.00) |
1.67e-06 (0.00378) |
RNASE11 | 5 (2%) | 219 |
0.365 (1.00) |
0.189 (1.00) |
0.327 (1.00) |
0.672 (1.00) |
0.495 (1.00) |
0.056 (1.00) |
0.217 (1.00) |
1 (1.00) |
0.367 (1.00) |
1 (1.00) |
3.18e-11 (7.22e-08) |
COL6A6 | 16 (7%) | 208 |
0.671 (1.00) |
0.845 (1.00) |
0.157 (1.00) |
0.201 (1.00) |
0.415 (1.00) |
0.143 (1.00) |
0.03 (1.00) |
0.721 (1.00) |
0.0553 (1.00) |
0.376 (1.00) |
1.98e-07 (0.000447) |
FBXW7 | 38 (17%) | 186 |
0.696 (1.00) |
0.0555 (1.00) |
0.341 (1.00) |
0.374 (1.00) |
0.0135 (1.00) |
0.103 (1.00) |
0.777 (1.00) |
0.0041 (1.00) |
0.00151 (1.00) |
0.0342 (1.00) |
0.855 (1.00) |
NRAS | 20 (9%) | 204 |
0.0691 (1.00) |
0.0434 (1.00) |
0.8 (1.00) |
0.0365 (1.00) |
1 (1.00) |
0.277 (1.00) |
0.0375 (1.00) |
0.377 (1.00) |
0.765 (1.00) |
0.469 (1.00) |
0.0251 (1.00) |
APC | 160 (71%) | 64 |
0.368 (1.00) |
0.404 (1.00) |
0.0159 (1.00) |
0.0753 (1.00) |
0.119 (1.00) |
0.91 (1.00) |
0.915 (1.00) |
0.661 (1.00) |
0.409 (1.00) |
0.191 (1.00) |
0.899 (1.00) |
KRAS | 96 (43%) | 128 |
0.0237 (1.00) |
0.113 (1.00) |
0.027 (1.00) |
0.685 (1.00) |
0.0636 (1.00) |
0.351 (1.00) |
0.317 (1.00) |
0.203 (1.00) |
0.584 (1.00) |
0.0373 (1.00) |
0.194 (1.00) |
SMAD4 | 26 (12%) | 198 |
0.795 (1.00) |
0.987 (1.00) |
1 (1.00) |
0.837 (1.00) |
0.00552 (1.00) |
0.81 (1.00) |
1 (1.00) |
0.788 (1.00) |
0.793 (1.00) |
0.83 (1.00) |
0.318 (1.00) |
TP53 | 120 (54%) | 104 |
0.496 (1.00) |
0.0605 (1.00) |
0.0135 (1.00) |
0.284 (1.00) |
0.000245 (0.55) |
0.874 (1.00) |
0.279 (1.00) |
0.919 (1.00) |
0.241 (1.00) |
0.559 (1.00) |
0.467 (1.00) |
FAM123B | 25 (11%) | 199 |
0.634 (1.00) |
0.863 (1.00) |
0.5 (1.00) |
1 (1.00) |
0.726 (1.00) |
0.644 (1.00) |
0.332 (1.00) |
0.782 (1.00) |
0.585 (1.00) |
0.645 (1.00) |
0.498 (1.00) |
TTN | 85 (38%) | 139 |
0.592 (1.00) |
0.392 (1.00) |
0.00419 (1.00) |
0.409 (1.00) |
0.0035 (1.00) |
0.111 (1.00) |
0.0598 (1.00) |
0.0671 (1.00) |
0.284 (1.00) |
0.905 (1.00) |
0.371 (1.00) |
SMAD2 | 15 (7%) | 209 |
0.885 (1.00) |
0.713 (1.00) |
0.779 (1.00) |
0.293 (1.00) |
0.482 (1.00) |
0.333 (1.00) |
0.269 (1.00) |
1 (1.00) |
0.244 (1.00) |
0.746 (1.00) |
0.0341 (1.00) |
TCF7L2 | 18 (8%) | 206 |
0.282 (1.00) |
0.404 (1.00) |
0.785 (1.00) |
0.624 (1.00) |
0.44 (1.00) |
0.299 (1.00) |
0.943 (1.00) |
0.737 (1.00) |
0.885 (1.00) |
0.573 (1.00) |
0.108 (1.00) |
FAT4 | 39 (17%) | 185 |
0.58 (1.00) |
0.152 (1.00) |
0.567 (1.00) |
0.725 (1.00) |
0.464 (1.00) |
0.473 (1.00) |
0.486 (1.00) |
0.0388 (1.00) |
0.154 (1.00) |
0.0414 (1.00) |
0.971 (1.00) |
ACVR1B | 14 (6%) | 210 |
0.605 (1.00) |
0.831 (1.00) |
0.0692 (1.00) |
1 (1.00) |
0.0288 (1.00) |
0.034 (1.00) |
1 (1.00) |
0.717 (1.00) |
0.391 (1.00) |
1 (1.00) |
0.477 (1.00) |
WBSCR17 | 19 (8%) | 205 |
0.39 (1.00) |
0.242 (1.00) |
0.0659 (1.00) |
1 (1.00) |
0.296 (1.00) |
0.79 (1.00) |
0.841 (1.00) |
0.522 (1.00) |
0.119 (1.00) |
0.102 (1.00) |
0.172 (1.00) |
PCDH9 | 22 (10%) | 202 |
0.128 (1.00) |
0.382 (1.00) |
0.812 (1.00) |
0.123 (1.00) |
0.932 (1.00) |
0.464 (1.00) |
0.779 (1.00) |
0.387 (1.00) |
0.0429 (1.00) |
0.191 (1.00) |
0.985 (1.00) |
LRP1B | 39 (17%) | 185 |
0.816 (1.00) |
0.213 (1.00) |
0.341 (1.00) |
0.29 (1.00) |
0.0115 (1.00) |
0.478 (1.00) |
0.779 (1.00) |
0.83 (1.00) |
0.943 (1.00) |
0.758 (1.00) |
0.806 (1.00) |
TNFRSF10C | 6 (3%) | 218 |
0.838 (1.00) |
0.181 (1.00) |
0.685 (1.00) |
0.395 (1.00) |
0.0674 (1.00) |
0.193 (1.00) |
0.064 (1.00) |
0.0117 (1.00) |
0.0793 (1.00) |
0.184 (1.00) |
|
MAP2K4 | 11 (5%) | 213 |
0.0342 (1.00) |
0.119 (1.00) |
0.51 (1.00) |
0.761 (1.00) |
0.754 (1.00) |
0.347 (1.00) |
0.694 (1.00) |
0.402 (1.00) |
0.271 (1.00) |
0.668 (1.00) |
0.104 (1.00) |
KIAA1804 | 15 (7%) | 209 |
0.284 (1.00) |
0.799 (1.00) |
0.0177 (1.00) |
0.425 (1.00) |
0.00911 (1.00) |
0.726 (1.00) |
0.344 (1.00) |
1 (1.00) |
0.881 (1.00) |
0.746 (1.00) |
0.0129 (1.00) |
KLHL4 | 16 (7%) | 208 |
0.129 (1.00) |
0.118 (1.00) |
0.781 (1.00) |
0.118 (1.00) |
0.119 (1.00) |
0.0111 (1.00) |
0.719 (1.00) |
0.199 (1.00) |
0.233 (1.00) |
0.0753 (1.00) |
0.837 (1.00) |
SOX9 | 10 (4%) | 214 |
0.573 (1.00) |
0.266 (1.00) |
0.29 (1.00) |
0.525 (1.00) |
0.581 (1.00) |
0.158 (1.00) |
0.902 (1.00) |
1 (1.00) |
0.64 (1.00) |
1 (1.00) |
0.203 (1.00) |
PRDM9 | 16 (7%) | 208 |
0.249 (1.00) |
0.325 (1.00) |
1 (1.00) |
0.606 (1.00) |
0.813 (1.00) |
0.215 (1.00) |
0.363 (1.00) |
0.0124 (1.00) |
0.79 (1.00) |
0.389 (1.00) |
0.135 (1.00) |
PCBP1 | 6 (3%) | 218 |
0.557 (1.00) |
0.767 (1.00) |
1 (1.00) |
0.685 (1.00) |
1 (1.00) |
0.498 (1.00) |
0.535 (1.00) |
0.0311 (1.00) |
0.378 (1.00) |
1 (1.00) |
0.0129 (1.00) |
DMD | 33 (15%) | 191 |
0.364 (1.00) |
0.566 (1.00) |
0.105 (1.00) |
0.132 (1.00) |
0.0182 (1.00) |
0.423 (1.00) |
0.115 (1.00) |
0.375 (1.00) |
0.0188 (1.00) |
0.607 (1.00) |
0.107 (1.00) |
CSMD1 | 26 (12%) | 198 |
0.00687 (1.00) |
0.854 (1.00) |
0.654 (1.00) |
0.677 (1.00) |
0.778 (1.00) |
0.392 (1.00) |
0.362 (1.00) |
1 (1.00) |
0.254 (1.00) |
0.377 (1.00) |
0.000554 (1.00) |
LIFR | 18 (8%) | 206 |
0.0294 (1.00) |
0.692 (1.00) |
1 (1.00) |
0.227 (1.00) |
0.741 (1.00) |
0.317 (1.00) |
0.943 (1.00) |
1 (1.00) |
0.929 (1.00) |
1 (1.00) |
0.852 (1.00) |
OR6N1 | 10 (4%) | 214 |
0.847 (1.00) |
0.573 (1.00) |
0.727 (1.00) |
0.751 (1.00) |
0.926 (1.00) |
0.706 (1.00) |
0.54 (1.00) |
1 (1.00) |
0.963 (1.00) |
0.397 (1.00) |
0.749 (1.00) |
CCDC160 | 7 (3%) | 217 |
0.535 (1.00) |
0.631 (1.00) |
1 (1.00) |
0.263 (1.00) |
1 (1.00) |
0.0671 (1.00) |
0.436 (1.00) |
1 (1.00) |
0.865 (1.00) |
1 (1.00) |
0.0598 (1.00) |
CPXCR1 | 9 (4%) | 215 |
0.243 (1.00) |
0.311 (1.00) |
1 (1.00) |
0.0902 (1.00) |
0.434 (1.00) |
0.209 (1.00) |
0.0702 (1.00) |
0.392 (1.00) |
0.565 (1.00) |
0.0466 (1.00) |
0.000567 (1.00) |
SLITRK1 | 15 (7%) | 209 |
0.898 (1.00) |
0.956 (1.00) |
0.779 (1.00) |
0.112 (1.00) |
0.813 (1.00) |
0.0487 (1.00) |
0.269 (1.00) |
0.276 (1.00) |
0.328 (1.00) |
0.366 (1.00) |
0.0034 (1.00) |
CTNNB1 | 11 (5%) | 213 |
0.586 (1.00) |
0.253 (1.00) |
0.74 (1.00) |
0.359 (1.00) |
0.543 (1.00) |
0.175 (1.00) |
0.31 (1.00) |
1 (1.00) |
0.753 (1.00) |
1 (1.00) |
0.00374 (1.00) |
DKK2 | 6 (3%) | 218 |
0.678 (1.00) |
0.452 (1.00) |
0.669 (1.00) |
1 (1.00) |
0.763 (1.00) |
0.648 (1.00) |
0.0876 (1.00) |
1 (1.00) |
0.598 (1.00) |
0.593 (1.00) |
0.167 (1.00) |
FLG | 32 (14%) | 192 |
0.222 (1.00) |
0.892 (1.00) |
0.207 (1.00) |
1 (1.00) |
0.0293 (1.00) |
0.44 (1.00) |
0.18 (1.00) |
0.368 (1.00) |
0.351 (1.00) |
0.482 (1.00) |
0.0167 (1.00) |
ARID1A | 21 (9%) | 203 |
0.142 (1.00) |
0.573 (1.00) |
0.621 (1.00) |
0.492 (1.00) |
0.0894 (1.00) |
0.126 (1.00) |
0.0963 (1.00) |
0.387 (1.00) |
0.114 (1.00) |
0.611 (1.00) |
0.0682 (1.00) |
KIAA1486 | 13 (6%) | 211 |
0.18 (1.00) |
0.404 (1.00) |
1 (1.00) |
1 (1.00) |
0.366 (1.00) |
0.316 (1.00) |
1 (1.00) |
0.269 (1.00) |
0.52 (1.00) |
0.102 (1.00) |
0.771 (1.00) |
ROBO1 | 18 (8%) | 206 |
0.767 (1.00) |
0.733 (1.00) |
0.595 (1.00) |
0.471 (1.00) |
0.0293 (1.00) |
0.0847 (1.00) |
0.622 (1.00) |
1 (1.00) |
0.226 (1.00) |
1 (1.00) |
0.0279 (1.00) |
ZFHX4 | 24 (11%) | 200 |
0.00119 (1.00) |
0.949 (1.00) |
1 (1.00) |
0.289 (1.00) |
0.544 (1.00) |
0.0374 (1.00) |
0.151 (1.00) |
0.395 (1.00) |
0.27 (1.00) |
0.509 (1.00) |
0.406 (1.00) |
EPHA3 | 16 (7%) | 208 |
0.495 (1.00) |
0.562 (1.00) |
0.402 (1.00) |
0.3 (1.00) |
0.613 (1.00) |
0.285 (1.00) |
0.543 (1.00) |
1 (1.00) |
0.851 (1.00) |
0.746 (1.00) |
0.306 (1.00) |
PRIM2 | 8 (4%) | 216 |
0.0794 (1.00) |
0.852 (1.00) |
0.703 (1.00) |
0.724 (1.00) |
0.752 (1.00) |
0.105 (1.00) |
0.325 (1.00) |
1 (1.00) |
0.636 (1.00) |
1 (1.00) |
0.000806 (1.00) |
UBE2NL | 7 (3%) | 217 |
0.399 (1.00) |
0.212 (1.00) |
1 (1.00) |
0.712 (1.00) |
0.896 (1.00) |
0.13 (1.00) |
0.436 (1.00) |
0.609 (1.00) |
0.943 (1.00) |
1 (1.00) |
0.0598 (1.00) |
ADAM29 | 11 (5%) | 213 |
0.272 (1.00) |
0.996 (1.00) |
0.51 (1.00) |
0.123 (1.00) |
0.932 (1.00) |
0.221 (1.00) |
0.694 (1.00) |
0.0511 (1.00) |
0.317 (1.00) |
1 (1.00) |
0.968 (1.00) |
ATP10A | 19 (8%) | 205 |
0.686 (1.00) |
0.52 (1.00) |
1 (1.00) |
0.811 (1.00) |
0.107 (1.00) |
0.0309 (1.00) |
0.289 (1.00) |
0.53 (1.00) |
0.0565 (1.00) |
0.604 (1.00) |
0.16 (1.00) |
DNAH5 | 34 (15%) | 190 |
0.722 (1.00) |
0.664 (1.00) |
0.105 (1.00) |
0.578 (1.00) |
0.394 (1.00) |
0.248 (1.00) |
0.251 (1.00) |
1 (1.00) |
0.244 (1.00) |
0.863 (1.00) |
0.37 (1.00) |
GABRA5 | 9 (4%) | 215 |
0.153 (1.00) |
0.35 (1.00) |
0.282 (1.00) |
0.74 (1.00) |
0.717 (1.00) |
0.308 (1.00) |
0.803 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.13 (1.00) |
NALCN | 20 (9%) | 204 |
0.582 (1.00) |
0.61 (1.00) |
1 (1.00) |
0.819 (1.00) |
0.846 (1.00) |
0.828 (1.00) |
0.21 (1.00) |
0.522 (1.00) |
0.102 (1.00) |
1 (1.00) |
0.293 (1.00) |
OTOL1 | 8 (4%) | 216 |
0.365 (1.00) |
0.104 (1.00) |
0.44 (1.00) |
1 (1.00) |
0.682 (1.00) |
0.0185 (1.00) |
0.528 (1.00) |
0.619 (1.00) |
0.444 (1.00) |
0.643 (1.00) |
0.166 (1.00) |
PTEN | 7 (3%) | 217 |
0.513 (1.00) |
0.0301 (1.00) |
0.44 (1.00) |
0.712 (1.00) |
0.262 (1.00) |
0.167 (1.00) |
1 (1.00) |
1 (1.00) |
0.792 (1.00) |
0.593 (1.00) |
0.14 (1.00) |
SDK1 | 27 (12%) | 197 |
0.729 (1.00) |
0.393 (1.00) |
0.00362 (1.00) |
0.685 (1.00) |
0.00901 (1.00) |
0.977 (1.00) |
0.314 (1.00) |
0.796 (1.00) |
0.886 (1.00) |
0.525 (1.00) |
0.816 (1.00) |
TLL1 | 15 (7%) | 209 |
0.292 (1.00) |
0.212 (1.00) |
1 (1.00) |
0.6 (1.00) |
0.144 (1.00) |
0.666 (1.00) |
0.931 (1.00) |
0.196 (1.00) |
0.278 (1.00) |
0.0849 (1.00) |
0.0344 (1.00) |
TMEM132D | 19 (8%) | 205 |
0.807 (1.00) |
0.879 (1.00) |
0.441 (1.00) |
0.811 (1.00) |
0.188 (1.00) |
0.844 (1.00) |
1 (1.00) |
0.158 (1.00) |
0.173 (1.00) |
0.325 (1.00) |
0.609 (1.00) |
TRPC4 | 17 (8%) | 207 |
0.571 (1.00) |
0.369 (1.00) |
1 (1.00) |
0.45 (1.00) |
0.0666 (1.00) |
0.0127 (1.00) |
0.0451 (1.00) |
0.518 (1.00) |
0.65 (1.00) |
1 (1.00) |
0.000999 (1.00) |
ATM | 25 (11%) | 199 |
0.827 (1.00) |
0.709 (1.00) |
0.11 (1.00) |
0.0934 (1.00) |
0.262 (1.00) |
0.76 (1.00) |
0.666 (1.00) |
0.299 (1.00) |
0.399 (1.00) |
0.509 (1.00) |
0.848 (1.00) |
GPC6 | 10 (4%) | 214 |
0.463 (1.00) |
0.995 (1.00) |
1 (1.00) |
1 (1.00) |
0.235 (1.00) |
0.0354 (1.00) |
1 (1.00) |
0.652 (1.00) |
0.884 (1.00) |
0.448 (1.00) |
0.518 (1.00) |
CDH8 | 14 (6%) | 210 |
0.458 (1.00) |
0.31 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.895 (1.00) |
1 (1.00) |
0.437 (1.00) |
0.842 (1.00) |
0.726 (1.00) |
0.325 (1.00) |
MGC26647 | 7 (3%) | 217 |
0.67 (1.00) |
0.976 (1.00) |
0.103 (1.00) |
0.263 (1.00) |
0.174 (1.00) |
0.13 (1.00) |
0.501 (1.00) |
0.61 (1.00) |
0.658 (1.00) |
0.637 (1.00) |
0.0751 (1.00) |
DKK4 | 7 (3%) | 217 |
0.574 (1.00) |
0.256 (1.00) |
0.44 (1.00) |
1 (1.00) |
0.156 (1.00) |
0.735 (1.00) |
0.436 (1.00) |
1 (1.00) |
0.755 (1.00) |
1 (1.00) |
0.000217 (0.487) |
PTPRM | 20 (9%) | 204 |
0.245 (1.00) |
0.672 (1.00) |
1 (1.00) |
0.493 (1.00) |
0.467 (1.00) |
0.299 (1.00) |
0.68 (1.00) |
0.53 (1.00) |
0.258 (1.00) |
0.774 (1.00) |
0.839 (1.00) |
AFF2 | 17 (8%) | 207 |
0.855 (1.00) |
0.778 (1.00) |
0.102 (1.00) |
0.622 (1.00) |
0.0776 (1.00) |
0.518 (1.00) |
0.687 (1.00) |
0.206 (1.00) |
0.29 (1.00) |
0.376 (1.00) |
0.0486 (1.00) |
NCAM2 | 12 (5%) | 212 |
0.684 (1.00) |
0.654 (1.00) |
0.52 (1.00) |
1 (1.00) |
0.14 (1.00) |
0.0395 (1.00) |
0.653 (1.00) |
1 (1.00) |
0.718 (1.00) |
1 (1.00) |
0.865 (1.00) |
OR2M4 | 8 (4%) | 216 |
0.636 (1.00) |
0.444 (1.00) |
0.11 (1.00) |
0.484 (1.00) |
0.196 (1.00) |
0.781 (1.00) |
1 (1.00) |
1 (1.00) |
0.956 (1.00) |
0.643 (1.00) |
0.586 (1.00) |
RYR2 | 29 (13%) | 195 |
0.817 (1.00) |
0.927 (1.00) |
0.519 (1.00) |
0.43 (1.00) |
0.799 (1.00) |
0.167 (1.00) |
0.82 (1.00) |
0.803 (1.00) |
0.64 (1.00) |
0.346 (1.00) |
0.934 (1.00) |
ELF3 | 6 (3%) | 218 |
0.678 (1.00) |
0.202 (1.00) |
0.374 (1.00) |
0.685 (1.00) |
0.841 (1.00) |
0.194 (1.00) |
1 (1.00) |
1 (1.00) |
0.792 (1.00) |
0.593 (1.00) |
0.626 (1.00) |
TRPS1 | 17 (8%) | 207 |
0.536 (1.00) |
0.246 (1.00) |
0.595 (1.00) |
0.622 (1.00) |
0.308 (1.00) |
0.0966 (1.00) |
0.0646 (1.00) |
0.199 (1.00) |
0.0488 (1.00) |
0.376 (1.00) |
0.0103 (1.00) |
FAM133A | 7 (3%) | 217 |
0.4 (1.00) |
0.791 (1.00) |
1 (1.00) |
0.712 (1.00) |
0.32 (1.00) |
0.639 (1.00) |
1 (1.00) |
1 (1.00) |
0.89 (1.00) |
0.593 (1.00) |
0.773 (1.00) |
IL1RAPL2 | 10 (4%) | 214 |
0.47 (1.00) |
0.817 (1.00) |
0.18 (1.00) |
0.2 (1.00) |
0.0261 (1.00) |
0.768 (1.00) |
1 (1.00) |
0.393 (1.00) |
0.441 (1.00) |
0.668 (1.00) |
0.533 (1.00) |
CCBP2 | 10 (4%) | 214 |
0.459 (1.00) |
0.901 (1.00) |
0.18 (1.00) |
0.525 (1.00) |
0.144 (1.00) |
0.221 (1.00) |
0.235 (1.00) |
1 (1.00) |
0.408 (1.00) |
1 (1.00) |
0.000112 (0.251) |
OPCML | 10 (4%) | 214 |
0.3 (1.00) |
0.726 (1.00) |
0.0717 (1.00) |
1 (1.00) |
0.126 (1.00) |
0.325 (1.00) |
1 (1.00) |
1 (1.00) |
0.723 (1.00) |
0.653 (1.00) |
0.891 (1.00) |
CDH18 | 13 (6%) | 211 |
0.59 (1.00) |
0.405 (1.00) |
0.759 (1.00) |
0.395 (1.00) |
0.898 (1.00) |
0.242 (1.00) |
0.488 (1.00) |
0.717 (1.00) |
0.746 (1.00) |
1 (1.00) |
0.00222 (1.00) |
OR2L13 | 10 (4%) | 214 |
0.661 (1.00) |
0.871 (1.00) |
1 (1.00) |
0.751 (1.00) |
1 (1.00) |
0.917 (1.00) |
0.479 (1.00) |
1 (1.00) |
0.487 (1.00) |
0.153 (1.00) |
0.107 (1.00) |
LRRN3 | 10 (4%) | 214 |
0.868 (1.00) |
0.486 (1.00) |
0.29 (1.00) |
0.525 (1.00) |
0.581 (1.00) |
0.353 (1.00) |
0.0795 (1.00) |
0.0511 (1.00) |
0.276 (1.00) |
1 (1.00) |
0.304 (1.00) |
BAI3 | 18 (8%) | 206 |
0.85 (1.00) |
0.0982 (1.00) |
0.794 (1.00) |
1 (1.00) |
0.0773 (1.00) |
0.0799 (1.00) |
0.118 (1.00) |
1 (1.00) |
0.0963 (1.00) |
1 (1.00) |
0.606 (1.00) |
MGC42105 | 11 (5%) | 213 |
0.555 (1.00) |
0.641 (1.00) |
0.179 (1.00) |
0.761 (1.00) |
0.454 (1.00) |
0.297 (1.00) |
0.46 (1.00) |
0.392 (1.00) |
0.702 (1.00) |
1 (1.00) |
0.0238 (1.00) |
TXNDC3 | 11 (5%) | 213 |
0.378 (1.00) |
0.541 (1.00) |
0.179 (1.00) |
0.359 (1.00) |
0.454 (1.00) |
0.563 (1.00) |
0.763 (1.00) |
0.402 (1.00) |
0.656 (1.00) |
0.668 (1.00) |
0.225 (1.00) |
LPPR4 | 13 (6%) | 211 |
0.623 (1.00) |
0.249 (1.00) |
0.353 (1.00) |
0.777 (1.00) |
0.36 (1.00) |
0.157 (1.00) |
0.0443 (1.00) |
1 (1.00) |
0.952 (1.00) |
1 (1.00) |
0.0149 (1.00) |
UNC13C | 17 (8%) | 207 |
0.71 (1.00) |
0.901 (1.00) |
1 (1.00) |
0.206 (1.00) |
0.574 (1.00) |
0.091 (1.00) |
0.169 (1.00) |
0.518 (1.00) |
0.275 (1.00) |
0.767 (1.00) |
0.535 (1.00) |
SCN7A | 15 (7%) | 209 |
0.709 (1.00) |
0.648 (1.00) |
0.562 (1.00) |
0.791 (1.00) |
0.611 (1.00) |
0.00602 (1.00) |
0.099 (1.00) |
1 (1.00) |
0.14 (1.00) |
0.726 (1.00) |
0.972 (1.00) |
ACOT4 | 3 (1%) | 221 |
0.0265 (1.00) |
0.555 (1.00) |
1 (1.00) |
0.399 (1.00) |
0.0608 (1.00) |
1 (1.00) |
0.376 (1.00) |
0.489 (1.00) |
0.36 (1.00) |
0.653 (1.00) |
|
GRIA1 | 15 (7%) | 209 |
0.458 (1.00) |
0.554 (1.00) |
0.0419 (1.00) |
0.181 (1.00) |
0.231 (1.00) |
0.454 (1.00) |
0.931 (1.00) |
0.0694 (1.00) |
0.582 (1.00) |
0.746 (1.00) |
0.211 (1.00) |
ING1 | 6 (3%) | 218 |
0.113 (1.00) |
0.606 (1.00) |
0.669 (1.00) |
0.429 (1.00) |
0.355 (1.00) |
0.434 (1.00) |
0.0109 (1.00) |
1 (1.00) |
0.118 (1.00) |
1 (1.00) |
0.547 (1.00) |
ZNF208 | 11 (5%) | 213 |
0.506 (1.00) |
0.102 (1.00) |
1 (1.00) |
1 (1.00) |
0.823 (1.00) |
0.0272 (1.00) |
0.833 (1.00) |
0.191 (1.00) |
0.463 (1.00) |
0.233 (1.00) |
0.581 (1.00) |
CRTC1 | 6 (3%) | 218 |
0.0365 (1.00) |
0.669 (1.00) |
0.429 (1.00) |
0.763 (1.00) |
0.194 (1.00) |
0.535 (1.00) |
0.609 (1.00) |
0.746 (1.00) |
1 (1.00) |
0.000473 (1.00) |
|
GUCY1A3 | 12 (5%) | 212 |
0.209 (1.00) |
0.0494 (1.00) |
0.352 (1.00) |
0.771 (1.00) |
0.146 (1.00) |
0.207 (1.00) |
0.917 (1.00) |
0.402 (1.00) |
0.297 (1.00) |
0.458 (1.00) |
0.834 (1.00) |
FAM22F | 9 (4%) | 215 |
0.199 (1.00) |
0.401 (1.00) |
0.282 (1.00) |
0.00356 (1.00) |
0.717 (1.00) |
0.00563 (1.00) |
1 (1.00) |
0.12 (1.00) |
0.0653 (1.00) |
0.164 (1.00) |
0.602 (1.00) |
CHRDL1 | 11 (5%) | 213 |
0.934 (1.00) |
0.634 (1.00) |
0.74 (1.00) |
0.761 (1.00) |
0.875 (1.00) |
0.248 (1.00) |
1 (1.00) |
0.402 (1.00) |
0.612 (1.00) |
1 (1.00) |
0.37 (1.00) |
EDNRB | 10 (4%) | 214 |
0.413 (1.00) |
0.196 (1.00) |
0.5 (1.00) |
0.338 (1.00) |
0.803 (1.00) |
0.0983 (1.00) |
0.182 (1.00) |
0.393 (1.00) |
0.388 (1.00) |
1 (1.00) |
0.00275 (1.00) |
ANK2 | 30 (13%) | 194 |
0.142 (1.00) |
0.597 (1.00) |
0.206 (1.00) |
0.33 (1.00) |
0.275 (1.00) |
0.071 (1.00) |
0.926 (1.00) |
0.804 (1.00) |
0.558 (1.00) |
0.288 (1.00) |
0.125 (1.00) |
CASP14 | 8 (4%) | 216 |
0.455 (1.00) |
0.766 (1.00) |
0.253 (1.00) |
1 (1.00) |
0.707 (1.00) |
0.695 (1.00) |
0.0674 (1.00) |
0.281 (1.00) |
0.0347 (1.00) |
0.288 (1.00) |
0.478 (1.00) |
LASS3 | 9 (4%) | 215 |
0.61 (1.00) |
0.532 (1.00) |
1 (1.00) |
0.74 (1.00) |
0.842 (1.00) |
0.0408 (1.00) |
0.197 (1.00) |
0.619 (1.00) |
0.428 (1.00) |
0.0879 (1.00) |
0.00303 (1.00) |
P2RY10 | 7 (3%) | 217 |
0.0115 (1.00) |
0.541 (1.00) |
0.679 (1.00) |
1 (1.00) |
0.496 (1.00) |
0.239 (1.00) |
0.436 (1.00) |
0.609 (1.00) |
0.442 (1.00) |
0.106 (1.00) |
0.00237 (1.00) |
CNTN1 | 14 (6%) | 210 |
0.823 (1.00) |
0.642 (1.00) |
1 (1.00) |
0.416 (1.00) |
0.898 (1.00) |
0.0101 (1.00) |
1 (1.00) |
1 (1.00) |
0.619 (1.00) |
0.746 (1.00) |
0.575 (1.00) |
ISL1 | 8 (4%) | 216 |
0.607 (1.00) |
0.858 (1.00) |
0.11 (1.00) |
0.724 (1.00) |
0.196 (1.00) |
0.781 (1.00) |
0.115 (1.00) |
1 (1.00) |
0.328 (1.00) |
1 (1.00) |
0.737 (1.00) |
ARID2 | 15 (7%) | 209 |
0.901 (1.00) |
0.831 (1.00) |
1 (1.00) |
0.791 (1.00) |
1 (1.00) |
0.284 (1.00) |
0.606 (1.00) |
1 (1.00) |
0.164 (1.00) |
0.746 (1.00) |
0.048 (1.00) |
EIF4A2 | 5 (2%) | 219 |
0.0793 (1.00) |
1 (1.00) |
0.672 (1.00) |
1 (1.00) |
0.513 (1.00) |
0.692 (1.00) |
0.546 (1.00) |
0.456 (1.00) |
0.527 (1.00) |
0.044 (1.00) |
|
OR51V1 | 9 (4%) | 215 |
0.453 (1.00) |
0.68 (1.00) |
0.06 (1.00) |
0.316 (1.00) |
0.00253 (1.00) |
0.0338 (1.00) |
0.282 (1.00) |
0.392 (1.00) |
0.0206 (1.00) |
0.653 (1.00) |
0.244 (1.00) |
ZC3H13 | 21 (9%) | 203 |
0.578 (1.00) |
0.114 (1.00) |
0.321 (1.00) |
1 (1.00) |
0.0754 (1.00) |
0.0664 (1.00) |
0.654 (1.00) |
0.168 (1.00) |
0.294 (1.00) |
0.347 (1.00) |
0.115 (1.00) |
CDH11 | 14 (6%) | 210 |
0.418 (1.00) |
0.736 (1.00) |
0.0692 (1.00) |
0.416 (1.00) |
0.309 (1.00) |
0.895 (1.00) |
0.589 (1.00) |
1 (1.00) |
0.775 (1.00) |
0.726 (1.00) |
0.234 (1.00) |
CHST9 | 8 (4%) | 216 |
0.131 (1.00) |
0.553 (1.00) |
0.703 (1.00) |
0.724 (1.00) |
0.0593 (1.00) |
0.248 (1.00) |
0.89 (1.00) |
1 (1.00) |
0.865 (1.00) |
0.637 (1.00) |
0.307 (1.00) |
HTR3B | 6 (3%) | 218 |
0.552 (1.00) |
0.604 (1.00) |
1 (1.00) |
0.685 (1.00) |
0.655 (1.00) |
0.17 (1.00) |
0.733 (1.00) |
0.609 (1.00) |
0.705 (1.00) |
1 (1.00) |
0.945 (1.00) |
LRRIQ3 | 10 (4%) | 214 |
0.504 (1.00) |
0.883 (1.00) |
1 (1.00) |
0.0509 (1.00) |
1 (1.00) |
0.17 (1.00) |
1 (1.00) |
1 (1.00) |
0.91 (1.00) |
1 (1.00) |
0.888 (1.00) |
HCN1 | 10 (4%) | 214 |
0.295 (1.00) |
0.416 (1.00) |
0.727 (1.00) |
1 (1.00) |
0.754 (1.00) |
0.308 (1.00) |
0.479 (1.00) |
1 (1.00) |
0.487 (1.00) |
1 (1.00) |
0.0453 (1.00) |
CHRM2 | 10 (4%) | 214 |
0.428 (1.00) |
0.835 (1.00) |
0.727 (1.00) |
0.525 (1.00) |
0.754 (1.00) |
0.0154 (1.00) |
0.902 (1.00) |
0.191 (1.00) |
0.0321 (1.00) |
0.233 (1.00) |
0.598 (1.00) |
CSMD3 | 28 (12%) | 196 |
0.348 (1.00) |
0.967 (1.00) |
0.83 (1.00) |
0.842 (1.00) |
0.0114 (1.00) |
0.0282 (1.00) |
0.233 (1.00) |
0.803 (1.00) |
0.0408 (1.00) |
1 (1.00) |
0.00368 (1.00) |
DCAF4L2 | 11 (5%) | 213 |
0.938 (1.00) |
0.557 (1.00) |
0.51 (1.00) |
1 (1.00) |
0.0596 (1.00) |
0.0145 (1.00) |
0.694 (1.00) |
0.393 (1.00) |
0.398 (1.00) |
0.668 (1.00) |
0.224 (1.00) |
DOCK2 | 21 (9%) | 203 |
0.626 (1.00) |
0.914 (1.00) |
0.621 (1.00) |
1 (1.00) |
0.457 (1.00) |
0.191 (1.00) |
0.344 (1.00) |
0.168 (1.00) |
0.173 (1.00) |
0.347 (1.00) |
0.981 (1.00) |
KCNA4 | 12 (5%) | 212 |
0.934 (1.00) |
0.629 (1.00) |
0.352 (1.00) |
0.557 (1.00) |
0.146 (1.00) |
0.643 (1.00) |
0.599 (1.00) |
0.267 (1.00) |
0.575 (1.00) |
0.458 (1.00) |
0.281 (1.00) |
DPP10 | 13 (6%) | 211 |
0.848 (1.00) |
0.409 (1.00) |
1 (1.00) |
0.777 (1.00) |
0.366 (1.00) |
0.281 (1.00) |
0.41 (1.00) |
0.269 (1.00) |
0.52 (1.00) |
0.484 (1.00) |
0.431 (1.00) |
EVC2 | 17 (8%) | 207 |
0.324 (1.00) |
0.397 (1.00) |
0.595 (1.00) |
1 (1.00) |
0.518 (1.00) |
0.595 (1.00) |
0.731 (1.00) |
0.728 (1.00) |
0.263 (1.00) |
0.389 (1.00) |
0.663 (1.00) |
C15ORF2 | 12 (5%) | 212 |
0.503 (1.00) |
0.637 (1.00) |
1 (1.00) |
0.38 (1.00) |
0.27 (1.00) |
0.307 (1.00) |
0.07 (1.00) |
0.402 (1.00) |
0.197 (1.00) |
0.668 (1.00) |
0.0716 (1.00) |
NLRP5 | 12 (5%) | 212 |
0.702 (1.00) |
0.485 (1.00) |
0.352 (1.00) |
0.38 (1.00) |
0.735 (1.00) |
0.444 (1.00) |
0.252 (1.00) |
0.697 (1.00) |
0.424 (1.00) |
0.469 (1.00) |
0.605 (1.00) |
KLK2 | 3 (1%) | 221 |
0.179 (1.00) |
0.555 (1.00) |
1 (1.00) |
0.399 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.863 (1.00) |
1 (1.00) |
0.561 (1.00) |
|
LUZP2 | 6 (3%) | 218 |
0.819 (1.00) |
1 (1.00) |
0.215 (1.00) |
0.247 (1.00) |
0.689 (1.00) |
0.364 (1.00) |
0.609 (1.00) |
0.943 (1.00) |
1 (1.00) |
0.0463 (1.00) |
|
PCDHB5 | 14 (6%) | 210 |
0.0851 (1.00) |
0.678 (1.00) |
0.236 (1.00) |
0.271 (1.00) |
0.709 (1.00) |
0.249 (1.00) |
0.504 (1.00) |
1 (1.00) |
0.164 (1.00) |
1 (1.00) |
0.00149 (1.00) |
LOXL2 | 9 (4%) | 215 |
0.405 (1.00) |
0.54 (1.00) |
1 (1.00) |
0.175 (1.00) |
0.916 (1.00) |
0.667 (1.00) |
1 (1.00) |
0.619 (1.00) |
0.789 (1.00) |
0.637 (1.00) |
0.393 (1.00) |
UBQLNL | 5 (2%) | 219 |
0.199 (1.00) |
0.643 (1.00) |
0.372 (1.00) |
0.577 (1.00) |
0.783 (1.00) |
0.566 (1.00) |
1 (1.00) |
0.897 (1.00) |
1 (1.00) |
0.414 (1.00) |
|
MYO1B | 13 (6%) | 211 |
0.343 (1.00) |
0.632 (1.00) |
1 (1.00) |
0.777 (1.00) |
0.366 (1.00) |
0.673 (1.00) |
0.53 (1.00) |
0.267 (1.00) |
0.575 (1.00) |
0.458 (1.00) |
0.123 (1.00) |
RIMS1 | 15 (7%) | 209 |
0.803 (1.00) |
0.833 (1.00) |
0.562 (1.00) |
0.6 (1.00) |
0.613 (1.00) |
0.584 (1.00) |
0.133 (1.00) |
0.276 (1.00) |
0.156 (1.00) |
0.484 (1.00) |
0.0211 (1.00) |
COL12A1 | 21 (9%) | 203 |
0.339 (1.00) |
0.846 (1.00) |
1 (1.00) |
1 (1.00) |
0.165 (1.00) |
0.259 (1.00) |
0.0963 (1.00) |
0.168 (1.00) |
0.149 (1.00) |
0.315 (1.00) |
0.447 (1.00) |
JAKMIP2 | 13 (6%) | 211 |
0.258 (1.00) |
0.267 (1.00) |
0.759 (1.00) |
0.395 (1.00) |
0.51 (1.00) |
0.172 (1.00) |
0.281 (1.00) |
0.269 (1.00) |
0.297 (1.00) |
0.469 (1.00) |
0.000711 (1.00) |
CDH10 | 14 (6%) | 210 |
0.803 (1.00) |
0.668 (1.00) |
0.236 (1.00) |
0.416 (1.00) |
0.431 (1.00) |
0.454 (1.00) |
0.372 (1.00) |
0.717 (1.00) |
0.647 (1.00) |
1 (1.00) |
0.009 (1.00) |
EPHA5 | 13 (6%) | 211 |
0.931 (1.00) |
0.192 (1.00) |
1 (1.00) |
1 (1.00) |
0.624 (1.00) |
0.791 (1.00) |
0.926 (1.00) |
0.267 (1.00) |
0.622 (1.00) |
0.458 (1.00) |
0.184 (1.00) |
ODZ1 | 22 (10%) | 202 |
0.00351 (1.00) |
0.435 (1.00) |
0.621 (1.00) |
0.00017 (0.381) |
0.0346 (1.00) |
0.921 (1.00) |
0.951 (1.00) |
0.77 (1.00) |
0.697 (1.00) |
0.604 (1.00) |
0.177 (1.00) |
POSTN | 11 (5%) | 213 |
0.0234 (1.00) |
0.794 (1.00) |
0.02 (1.00) |
1 (1.00) |
0.024 (1.00) |
1 (1.00) |
0.255 (1.00) |
0.393 (1.00) |
0.251 (1.00) |
0.653 (1.00) |
0.365 (1.00) |
SYNE1 | 47 (21%) | 177 |
0.351 (1.00) |
0.379 (1.00) |
0.154 (1.00) |
0.626 (1.00) |
0.0767 (1.00) |
0.0304 (1.00) |
0.163 (1.00) |
0.322 (1.00) |
0.456 (1.00) |
0.803 (1.00) |
0.0549 (1.00) |
ZEB2 | 15 (7%) | 209 |
0.354 (1.00) |
0.987 (1.00) |
1 (1.00) |
0.6 (1.00) |
0.959 (1.00) |
0.376 (1.00) |
0.524 (1.00) |
0.721 (1.00) |
0.643 (1.00) |
0.758 (1.00) |
0.969 (1.00) |
TUSC3 | 7 (3%) | 217 |
0.405 (1.00) |
0.509 (1.00) |
1 (1.00) |
1 (1.00) |
0.896 (1.00) |
0.498 (1.00) |
0.501 (1.00) |
0.61 (1.00) |
0.658 (1.00) |
0.637 (1.00) |
0.631 (1.00) |
CACNG7 | 6 (3%) | 218 |
0.33 (1.00) |
0.869 (1.00) |
0.374 (1.00) |
0.429 (1.00) |
0.437 (1.00) |
1 (1.00) |
0.535 (1.00) |
0.609 (1.00) |
0.666 (1.00) |
1 (1.00) |
0.0129 (1.00) |
RWDD2B | 8 (4%) | 216 |
0.796 (1.00) |
0.247 (1.00) |
0.703 (1.00) |
1 (1.00) |
0.824 (1.00) |
0.115 (1.00) |
0.325 (1.00) |
1 (1.00) |
0.334 (1.00) |
1 (1.00) |
0.000806 (1.00) |
SLC25A13 | 7 (3%) | 217 |
0.651 (1.00) |
0.178 (1.00) |
1 (1.00) |
0.122 (1.00) |
0.896 (1.00) |
0.0501 (1.00) |
0.501 (1.00) |
0.61 (1.00) |
0.658 (1.00) |
0.637 (1.00) |
0.0751 (1.00) |
DPF2 | 4 (2%) | 220 |
0.527 (1.00) |
0.588 (1.00) |
0.351 (1.00) |
0.305 (1.00) |
0.742 (1.00) |
1 (1.00) |
1 (1.00) |
0.565 (1.00) |
1 (1.00) |
0.791 (1.00) |
|
PCDH10 | 17 (8%) | 207 |
0.209 (1.00) |
0.976 (1.00) |
0.283 (1.00) |
0.206 (1.00) |
0.357 (1.00) |
0.518 (1.00) |
0.563 (1.00) |
0.518 (1.00) |
0.619 (1.00) |
0.761 (1.00) |
0.216 (1.00) |
MCF2 | 12 (5%) | 212 |
0.479 (1.00) |
0.476 (1.00) |
1 (1.00) |
0.557 (1.00) |
0.27 (1.00) |
0.0208 (1.00) |
0.599 (1.00) |
1 (1.00) |
0.702 (1.00) |
1 (1.00) |
0.864 (1.00) |
NCKAP5 | 15 (7%) | 209 |
0.796 (1.00) |
0.637 (1.00) |
0.158 (1.00) |
1 (1.00) |
0.437 (1.00) |
0.213 (1.00) |
0.704 (1.00) |
0.461 (1.00) |
0.739 (1.00) |
0.726 (1.00) |
0.796 (1.00) |
RIMS2 | 13 (6%) | 211 |
0.208 (1.00) |
0.763 (1.00) |
0.0705 (1.00) |
0.777 (1.00) |
0.1 (1.00) |
0.214 (1.00) |
0.926 (1.00) |
0.697 (1.00) |
0.756 (1.00) |
0.705 (1.00) |
0.583 (1.00) |
ATP7A | 6 (3%) | 218 |
0.178 (1.00) |
0.669 (1.00) |
0.429 (1.00) |
0.426 (1.00) |
0.0227 (1.00) |
0.29 (1.00) |
0.222 (1.00) |
0.127 (1.00) |
0.593 (1.00) |
0.917 (1.00) |
|
TPTE | 12 (5%) | 212 |
0.657 (1.00) |
0.562 (1.00) |
0.111 (1.00) |
0.557 (1.00) |
0.0724 (1.00) |
0.444 (1.00) |
0.411 (1.00) |
1 (1.00) |
0.944 (1.00) |
1 (1.00) |
0.803 (1.00) |
OR8B4 | 6 (3%) | 218 |
0.705 (1.00) |
0.839 (1.00) |
0.327 (1.00) |
0.429 (1.00) |
0.426 (1.00) |
0.689 (1.00) |
0.535 (1.00) |
0.609 (1.00) |
0.666 (1.00) |
1 (1.00) |
0.061 (1.00) |
SFMBT2 | 13 (6%) | 211 |
0.398 (1.00) |
0.657 (1.00) |
0.0705 (1.00) |
0.575 (1.00) |
0.207 (1.00) |
0.258 (1.00) |
0.619 (1.00) |
0.697 (1.00) |
0.862 (1.00) |
0.705 (1.00) |
0.538 (1.00) |
FLRT2 | 13 (6%) | 211 |
0.744 (1.00) |
0.697 (1.00) |
0.353 (1.00) |
0.395 (1.00) |
0.797 (1.00) |
0.0547 (1.00) |
0.53 (1.00) |
0.269 (1.00) |
0.47 (1.00) |
0.484 (1.00) |
0.0458 (1.00) |
BCHE | 9 (4%) | 215 |
0.427 (1.00) |
0.576 (1.00) |
0.725 (1.00) |
0.175 (1.00) |
1 (1.00) |
0.228 (1.00) |
0.315 (1.00) |
1 (1.00) |
0.733 (1.00) |
1 (1.00) |
0.718 (1.00) |
C8B | 10 (4%) | 214 |
0.263 (1.00) |
0.122 (1.00) |
0.29 (1.00) |
0.2 (1.00) |
0.182 (1.00) |
0.414 (1.00) |
1 (1.00) |
0.652 (1.00) |
0.526 (1.00) |
1 (1.00) |
0.839 (1.00) |
FREM2 | 23 (10%) | 201 |
0.612 (1.00) |
0.139 (1.00) |
0.473 (1.00) |
0.0138 (1.00) |
0.701 (1.00) |
0.11 (1.00) |
0.715 (1.00) |
0.387 (1.00) |
0.581 (1.00) |
0.509 (1.00) |
0.0471 (1.00) |
GABRG1 | 8 (4%) | 216 |
0.514 (1.00) |
0.0941 (1.00) |
1 (1.00) |
0.0293 (1.00) |
0.562 (1.00) |
0.303 (1.00) |
1 (1.00) |
0.619 (1.00) |
0.708 (1.00) |
0.643 (1.00) |
0.221 (1.00) |
SAT1 | 4 (2%) | 220 |
0.211 (1.00) |
0.315 (1.00) |
0.0505 (1.00) |
0.397 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.897 (1.00) |
1 (1.00) |
0.851 (1.00) |
|
CHD4 | 17 (8%) | 207 |
0.715 (1.00) |
0.514 (1.00) |
1 (1.00) |
1 (1.00) |
0.467 (1.00) |
0.386 (1.00) |
0.0527 (1.00) |
0.728 (1.00) |
0.354 (1.00) |
0.761 (1.00) |
0.00928 (1.00) |
PCDHB2 | 14 (6%) | 210 |
0.321 (1.00) |
0.876 (1.00) |
0.0692 (1.00) |
0.584 (1.00) |
0.309 (1.00) |
0.669 (1.00) |
0.684 (1.00) |
1 (1.00) |
0.975 (1.00) |
1 (1.00) |
0.314 (1.00) |
TMTC1 | 13 (6%) | 211 |
0.857 (1.00) |
0.599 (1.00) |
1 (1.00) |
1 (1.00) |
0.366 (1.00) |
0.673 (1.00) |
0.926 (1.00) |
0.267 (1.00) |
0.622 (1.00) |
0.668 (1.00) |
0.818 (1.00) |
SH3GL3 | 8 (4%) | 216 |
0.468 (1.00) |
0.196 (1.00) |
0.703 (1.00) |
0.484 (1.00) |
0.824 (1.00) |
0.223 (1.00) |
0.418 (1.00) |
0.61 (1.00) |
0.789 (1.00) |
0.0986 (1.00) |
0.0133 (1.00) |
CACNG3 | 8 (4%) | 216 |
0.468 (1.00) |
0.145 (1.00) |
0.703 (1.00) |
0.484 (1.00) |
0.321 (1.00) |
0.335 (1.00) |
0.89 (1.00) |
0.619 (1.00) |
0.849 (1.00) |
0.643 (1.00) |
0.87 (1.00) |
POTEB | 8 (4%) | 216 |
0.634 (1.00) |
0.529 (1.00) |
0.703 (1.00) |
1 (1.00) |
0.409 (1.00) |
0.223 (1.00) |
0.325 (1.00) |
0.61 (1.00) |
0.43 (1.00) |
0.637 (1.00) |
0.000806 (1.00) |
GRIN2A | 19 (8%) | 205 |
0.457 (1.00) |
0.528 (1.00) |
0.441 (1.00) |
0.348 (1.00) |
0.943 (1.00) |
0.446 (1.00) |
0.073 (1.00) |
1 (1.00) |
0.697 (1.00) |
1 (1.00) |
0.158 (1.00) |
NRXN3 | 17 (8%) | 207 |
0.879 (1.00) |
0.738 (1.00) |
0.102 (1.00) |
0.622 (1.00) |
0.0804 (1.00) |
0.51 (1.00) |
0.336 (1.00) |
0.199 (1.00) |
0.448 (1.00) |
0.761 (1.00) |
0.0203 (1.00) |
OR7C1 | 6 (3%) | 218 |
0.12 (1.00) |
0.327 (1.00) |
0.429 (1.00) |
0.196 (1.00) |
0.315 (1.00) |
1 (1.00) |
1 (1.00) |
0.838 (1.00) |
1 (1.00) |
0.64 (1.00) |
|
SPATA8 | 3 (1%) | 221 |
0.706 (1.00) |
0.0279 (1.00) |
0.107 (1.00) |
0.0616 (1.00) |
1 (1.00) |
0.778 (1.00) |
1 (1.00) |
0.863 (1.00) |
1 (1.00) |
0.331 (1.00) |
|
OR2M2 | 6 (3%) | 218 |
0.106 (1.00) |
0.535 (1.00) |
0.327 (1.00) |
0.106 (1.00) |
0.0347 (1.00) |
0.0365 (1.00) |
1 (1.00) |
0.166 (1.00) |
0.212 (1.00) |
0.179 (1.00) |
0.189 (1.00) |
SORCS1 | 15 (7%) | 209 |
0.0276 (1.00) |
0.116 (1.00) |
1 (1.00) |
1 (1.00) |
0.871 (1.00) |
0.0128 (1.00) |
0.429 (1.00) |
1 (1.00) |
0.374 (1.00) |
0.503 (1.00) |
0.00977 (1.00) |
IL18R1 | 10 (4%) | 214 |
0.443 (1.00) |
0.455 (1.00) |
0.727 (1.00) |
1 (1.00) |
0.282 (1.00) |
0.0217 (1.00) |
0.604 (1.00) |
0.393 (1.00) |
0.229 (1.00) |
0.653 (1.00) |
0.766 (1.00) |
C16ORF45 | 3 (1%) | 221 |
0.795 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.217 (1.00) |
0.132 (1.00) |
0.0161 (1.00) |
0.213 (1.00) |
0.827 (1.00) |
||
INHBA | 9 (4%) | 215 |
0.911 (1.00) |
0.204 (1.00) |
0.725 (1.00) |
0.503 (1.00) |
0.00297 (1.00) |
0.137 (1.00) |
1 (1.00) |
0.392 (1.00) |
0.565 (1.00) |
0.653 (1.00) |
0.945 (1.00) |
MIER3 | 11 (5%) | 213 |
0.442 (1.00) |
0.905 (1.00) |
0.179 (1.00) |
0.761 (1.00) |
0.504 (1.00) |
0.321 (1.00) |
0.214 (1.00) |
0.393 (1.00) |
0.5 (1.00) |
0.668 (1.00) |
0.00059 (1.00) |
ZNF585A | 10 (4%) | 214 |
0.479 (1.00) |
0.504 (1.00) |
1 (1.00) |
1 (1.00) |
0.3 (1.00) |
0.17 (1.00) |
0.479 (1.00) |
0.392 (1.00) |
0.702 (1.00) |
0.643 (1.00) |
0.0925 (1.00) |
FSTL5 | 11 (5%) | 213 |
0.383 (1.00) |
0.437 (1.00) |
1 (1.00) |
0.123 (1.00) |
0.823 (1.00) |
0.0547 (1.00) |
0.694 (1.00) |
1 (1.00) |
0.79 (1.00) |
1 (1.00) |
0.281 (1.00) |
DOK5 | 6 (3%) | 218 |
0.704 (1.00) |
0.0225 (1.00) |
1 (1.00) |
0.106 (1.00) |
0.0676 (1.00) |
1 (1.00) |
0.445 (1.00) |
1 (1.00) |
0.89 (1.00) |
0.527 (1.00) |
0.96 (1.00) |
ZNF99 | 11 (5%) | 213 |
0.112 (1.00) |
0.731 (1.00) |
1 (1.00) |
1 (1.00) |
0.296 (1.00) |
0.248 (1.00) |
0.694 (1.00) |
0.393 (1.00) |
0.726 (1.00) |
0.668 (1.00) |
0.00681 (1.00) |
GML | 6 (3%) | 218 |
0.164 (1.00) |
0.85 (1.00) |
0.669 (1.00) |
0.215 (1.00) |
0.763 (1.00) |
0.826 (1.00) |
0.733 (1.00) |
0.546 (1.00) |
0.741 (1.00) |
0.527 (1.00) |
0.36 (1.00) |
PPP2R2B | 3 (1%) | 221 |
0.532 (1.00) |
0.223 (1.00) |
0.107 (1.00) |
0.105 (1.00) |
0.00532 (1.00) |
0.778 (1.00) |
1 (1.00) |
0.367 (1.00) |
1 (1.00) |
||
LRTM1 | 7 (3%) | 217 |
0.603 (1.00) |
0.713 (1.00) |
1 (1.00) |
0.449 (1.00) |
0.896 (1.00) |
0.167 (1.00) |
1 (1.00) |
0.61 (1.00) |
0.906 (1.00) |
0.637 (1.00) |
0.14 (1.00) |
OR10G9 | 6 (3%) | 218 |
0.295 (1.00) |
0.944 (1.00) |
0.669 (1.00) |
0.106 (1.00) |
0.00497 (1.00) |
0.194 (1.00) |
0.629 (1.00) |
0.609 (1.00) |
0.746 (1.00) |
1 (1.00) |
0.061 (1.00) |
ERBB3 | 14 (6%) | 210 |
0.354 (1.00) |
0.662 (1.00) |
0.559 (1.00) |
1 (1.00) |
0.486 (1.00) |
0.669 (1.00) |
0.862 (1.00) |
0.717 (1.00) |
0.78 (1.00) |
1 (1.00) |
0.626 (1.00) |
PSG8 | 8 (4%) | 216 |
0.176 (1.00) |
0.991 (1.00) |
0.11 (1.00) |
1 (1.00) |
0.21 (1.00) |
0.223 (1.00) |
0.89 (1.00) |
1 (1.00) |
0.471 (1.00) |
0.0345 (1.00) |
0.195 (1.00) |
SYT16 | 9 (4%) | 215 |
0.458 (1.00) |
0.202 (1.00) |
1 (1.00) |
1 (1.00) |
0.535 (1.00) |
0.281 (1.00) |
0.282 (1.00) |
0.392 (1.00) |
0.269 (1.00) |
0.653 (1.00) |
0.244 (1.00) |
LPHN3 | 13 (6%) | 211 |
0.401 (1.00) |
0.197 (1.00) |
0.225 (1.00) |
1 (1.00) |
0.397 (1.00) |
0.00229 (1.00) |
0.281 (1.00) |
1 (1.00) |
0.194 (1.00) |
0.175 (1.00) |
0.351 (1.00) |
LRP2 | 35 (16%) | 189 |
0.601 (1.00) |
0.494 (1.00) |
0.164 (1.00) |
0.463 (1.00) |
0.0823 (1.00) |
0.309 (1.00) |
0.934 (1.00) |
0.308 (1.00) |
0.561 (1.00) |
0.627 (1.00) |
0.943 (1.00) |
SOHLH2 | 9 (4%) | 215 |
0.122 (1.00) |
0.35 (1.00) |
0.282 (1.00) |
1 (1.00) |
0.717 (1.00) |
0.0621 (1.00) |
0.562 (1.00) |
1 (1.00) |
0.918 (1.00) |
1 (1.00) |
0.825 (1.00) |
ZIM3 | 9 (4%) | 215 |
0.585 (1.00) |
0.16 (1.00) |
0.137 (1.00) |
0.74 (1.00) |
0.193 (1.00) |
0.107 (1.00) |
0.253 (1.00) |
0.619 (1.00) |
0.789 (1.00) |
0.0879 (1.00) |
0.00743 (1.00) |
DSEL | 14 (6%) | 210 |
0.914 (1.00) |
0.846 (1.00) |
0.236 (1.00) |
0.271 (1.00) |
0.179 (1.00) |
0.0727 (1.00) |
0.121 (1.00) |
0.717 (1.00) |
0.647 (1.00) |
1 (1.00) |
0.000545 (1.00) |
MDGA2 | 10 (4%) | 214 |
0.733 (1.00) |
0.366 (1.00) |
0.727 (1.00) |
1 (1.00) |
0.282 (1.00) |
0.414 (1.00) |
0.902 (1.00) |
1 (1.00) |
0.814 (1.00) |
1 (1.00) |
0.237 (1.00) |
RBMS3 | 6 (3%) | 218 |
0.425 (1.00) |
0.682 (1.00) |
0.669 (1.00) |
0.429 (1.00) |
0.763 (1.00) |
0.17 (1.00) |
1 (1.00) |
1 (1.00) |
0.89 (1.00) |
0.527 (1.00) |
0.543 (1.00) |
TMBIM4 | 4 (2%) | 220 |
0.426 (1.00) |
1 (1.00) |
0.623 (1.00) |
1 (1.00) |
0.14 (1.00) |
0.647 (1.00) |
0.376 (1.00) |
0.489 (1.00) |
0.36 (1.00) |
0.131 (1.00) |
|
FAM135B | 15 (7%) | 209 |
0.877 (1.00) |
0.676 (1.00) |
0.562 (1.00) |
1 (1.00) |
0.613 (1.00) |
0.533 (1.00) |
0.704 (1.00) |
1 (1.00) |
0.573 (1.00) |
1 (1.00) |
0.675 (1.00) |
CYP7B1 | 7 (3%) | 217 |
0.935 (1.00) |
0.797 (1.00) |
1 (1.00) |
0.449 (1.00) |
0.106 (1.00) |
0.0196 (1.00) |
1 (1.00) |
1 (1.00) |
0.273 (1.00) |
1 (1.00) |
0.957 (1.00) |
SLC16A7 | 9 (4%) | 215 |
0.246 (1.00) |
0.586 (1.00) |
0.282 (1.00) |
0.74 (1.00) |
0.166 (1.00) |
0.137 (1.00) |
0.803 (1.00) |
0.392 (1.00) |
0.839 (1.00) |
0.653 (1.00) |
0.0533 (1.00) |
P value = 1.26e-05 (t-test), Q value = 0.028
Table S1. Gene #3: 'PIK3CA MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
PIK3CA MUTATED | 33 | 0.5 (1.4) |
PIK3CA WILD-TYPE | 189 | 2.6 (5.1) |
Figure S1. Get High-res Image Gene #3: 'PIK3CA MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 2e-06 (Fisher's exact test), Q value = 0.0045
Table S2. Gene #5: 'BRAF MUTATION STATUS' versus Clinical Feature #5: 'HISTOLOGICAL.TYPE'
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA |
---|---|---|---|---|
ALL | 128 | 24 | 57 | 8 |
BRAF MUTATED | 9 | 11 | 1 | 1 |
BRAF WILD-TYPE | 119 | 13 | 56 | 7 |
Figure S2. Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Clinical Feature #5: 'HISTOLOGICAL.TYPE'

P value = 3.21e-11 (t-test), Q value = 7.3e-08
Table S3. Gene #14: 'KRTAP5-5 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
KRTAP5-5 MUTATED | 4 | 0.0 (0.0) |
KRTAP5-5 WILD-TYPE | 218 | 2.3 (4.8) |
Figure S3. Get High-res Image Gene #14: 'KRTAP5-5 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 2.98e-05 (t-test), Q value = 0.067
Table S4. Gene #22: 'NRXN1 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
NRXN1 MUTATED | 20 | 0.5 (1.3) |
NRXN1 WILD-TYPE | 202 | 2.4 (5.0) |
Figure S4. Get High-res Image Gene #22: 'NRXN1 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 9.11e-05 (t-test), Q value = 0.2
Table S5. Gene #32: 'CNTN6 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
CNTN6 MUTATED | 17 | 0.5 (1.3) |
CNTN6 WILD-TYPE | 205 | 2.4 (5.0) |
Figure S5. Get High-res Image Gene #32: 'CNTN6 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 8.45e-06 (t-test), Q value = 0.019
Table S6. Gene #35: 'CDH2 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
CDH2 MUTATED | 16 | 0.4 (1.0) |
CDH2 WILD-TYPE | 206 | 2.4 (5.0) |
Figure S6. Get High-res Image Gene #35: 'CDH2 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 5.88e-05 (t-test), Q value = 0.13
Table S7. Gene #36: 'CNBD1 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
CNBD1 MUTATED | 7 | 0.3 (0.8) |
CNBD1 WILD-TYPE | 215 | 2.3 (4.9) |
Figure S7. Get High-res Image Gene #36: 'CNBD1 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 5.02e-08 (t-test), Q value = 0.00011
Table S8. Gene #39: 'ERBB4 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
ERBB4 MUTATED | 18 | 0.2 (0.7) |
ERBB4 WILD-TYPE | 204 | 2.4 (5.0) |
Figure S8. Get High-res Image Gene #39: 'ERBB4 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 3.99e-08 (t-test), Q value = 9e-05
Table S9. Gene #48: 'ACVR2A MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
ACVR2A MUTATED | 9 | 0.2 (0.4) |
ACVR2A WILD-TYPE | 213 | 2.3 (4.9) |
Figure S9. Get High-res Image Gene #48: 'ACVR2A MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 1.74e-10 (t-test), Q value = 3.9e-07
Table S10. Gene #70: 'CDH9 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
CDH9 MUTATED | 15 | 0.1 (0.3) |
CDH9 WILD-TYPE | 207 | 2.4 (4.9) |
Figure S10. Get High-res Image Gene #70: 'CDH9 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 0.000109 (t-test), Q value = 0.25
Table S11. Gene #71: 'GRIK3 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
GRIK3 MUTATED | 17 | 0.5 (1.2) |
GRIK3 WILD-TYPE | 205 | 2.4 (5.0) |
Figure S11. Get High-res Image Gene #71: 'GRIK3 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 3.24e-11 (t-test), Q value = 7.4e-08
Table S12. Gene #88: 'GGT1 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
GGT1 MUTATED | 3 | 0.0 (0.0) |
GGT1 WILD-TYPE | 219 | 2.3 (4.8) |
Figure S12. Get High-res Image Gene #88: 'GGT1 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 3.1e-07 (t-test), Q value = 7e-04
Table S13. Gene #91: 'PCDHA10 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
PCDHA10 MUTATED | 10 | 0.2 (0.6) |
PCDHA10 WILD-TYPE | 212 | 2.3 (4.9) |
Figure S13. Get High-res Image Gene #91: 'PCDHA10 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 2.7e-10 (t-test), Q value = 6.1e-07
Table S14. Gene #94: 'FAM5C MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
FAM5C MUTATED | 13 | 0.1 (0.3) |
FAM5C WILD-TYPE | 209 | 2.4 (4.9) |
Figure S14. Get High-res Image Gene #94: 'FAM5C MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 8.54e-10 (t-test), Q value = 1.9e-06
Table S15. Gene #99: 'IFT80 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
IFT80 MUTATED | 10 | 0.1 (0.3) |
IFT80 WILD-TYPE | 212 | 2.4 (4.9) |
Figure S15. Get High-res Image Gene #99: 'IFT80 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 5.01e-05 (t-test), Q value = 0.11
Table S16. Gene #118: 'DACH2 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
DACH2 MUTATED | 12 | 0.5 (0.9) |
DACH2 WILD-TYPE | 210 | 2.4 (4.9) |
Figure S16. Get High-res Image Gene #118: 'DACH2 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 6.96e-05 (logrank test), Q value = 0.16
Table S17. Gene #120: 'PCDH11X MUTATION STATUS' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 120 | 14 | 0.9 - 72.1 (10.9) |
PCDH11X MUTATED | 11 | 4 | 1.0 - 21.0 (1.0) |
PCDH11X WILD-TYPE | 109 | 10 | 0.9 - 72.1 (12.0) |
Figure S17. Get High-res Image Gene #120: 'PCDH11X MUTATION STATUS' versus Clinical Feature #1: 'Time to Death'

P value = 3.24e-11 (t-test), Q value = 7.4e-08
Table S18. Gene #126: 'BTNL8 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
BTNL8 MUTATED | 3 | 0.0 (0.0) |
BTNL8 WILD-TYPE | 219 | 2.3 (4.8) |
Figure S18. Get High-res Image Gene #126: 'BTNL8 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 3.11e-11 (t-test), Q value = 7.1e-08
Table S19. Gene #129: 'NXF5 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
NXF5 MUTATED | 7 | 0.0 (0.0) |
NXF5 WILD-TYPE | 215 | 2.3 (4.9) |
Figure S19. Get High-res Image Gene #129: 'NXF5 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 1.4e-06 (t-test), Q value = 0.0032
Table S20. Gene #134: 'SPATA17 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
SPATA17 MUTATED | 9 | 0.2 (0.7) |
SPATA17 WILD-TYPE | 213 | 2.3 (4.9) |
Figure S20. Get High-res Image Gene #134: 'SPATA17 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 3.11e-11 (t-test), Q value = 7.1e-08
Table S21. Gene #143: 'ZCWPW2 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
ZCWPW2 MUTATED | 7 | 0.0 (0.0) |
ZCWPW2 WILD-TYPE | 215 | 2.3 (4.9) |
Figure S21. Get High-res Image Gene #143: 'ZCWPW2 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 1.32e-08 (t-test), Q value = 3e-05
Table S22. Gene #151: 'CDH12 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
CDH12 MUTATED | 13 | 0.2 (0.6) |
CDH12 WILD-TYPE | 209 | 2.4 (4.9) |
Figure S22. Get High-res Image Gene #151: 'CDH12 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 1.5e-08 (t-test), Q value = 3.4e-05
Table S23. Gene #163: 'ZNF167 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
ZNF167 MUTATED | 7 | 0.1 (0.4) |
ZNF167 WILD-TYPE | 215 | 2.3 (4.9) |
Figure S23. Get High-res Image Gene #163: 'ZNF167 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 1.03e-07 (t-test), Q value = 0.00023
Table S24. Gene #170: 'ZFPM2 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
ZFPM2 MUTATED | 6 | 0.2 (0.4) |
ZFPM2 WILD-TYPE | 216 | 2.3 (4.9) |
Figure S24. Get High-res Image Gene #170: 'ZFPM2 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 3.18e-11 (t-test), Q value = 7.2e-08
Table S25. Gene #180: 'DPY19L1 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
DPY19L1 MUTATED | 5 | 0.0 (0.0) |
DPY19L1 WILD-TYPE | 217 | 2.3 (4.8) |
Figure S25. Get High-res Image Gene #180: 'DPY19L1 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 3.21e-11 (t-test), Q value = 7.3e-08
Table S26. Gene #185: 'TMPRSS13 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
TMPRSS13 MUTATED | 4 | 0.0 (0.0) |
TMPRSS13 WILD-TYPE | 218 | 2.3 (4.8) |
Figure S26. Get High-res Image Gene #185: 'TMPRSS13 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 1.67e-06 (t-test), Q value = 0.0038
Table S27. Gene #190: 'B2M MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
B2M MUTATED | 5 | 0.2 (0.4) |
B2M WILD-TYPE | 217 | 2.3 (4.9) |
Figure S27. Get High-res Image Gene #190: 'B2M MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 3.18e-11 (t-test), Q value = 7.2e-08
Table S28. Gene #202: 'RNASE11 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
RNASE11 MUTATED | 5 | 0.0 (0.0) |
RNASE11 WILD-TYPE | 217 | 2.3 (4.8) |
Figure S28. Get High-res Image Gene #202: 'RNASE11 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

P value = 1.98e-07 (t-test), Q value = 0.00045
Table S29. Gene #205: 'COL6A6 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 222 | 2.3 (4.8) |
COL6A6 MUTATED | 16 | 0.2 (0.8) |
COL6A6 WILD-TYPE | 206 | 2.4 (5.0) |
Figure S29. Get High-res Image Gene #205: 'COL6A6 MUTATION STATUS' versus Clinical Feature #11: 'NUMBER.OF.LYMPH.NODES'

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Mutation data file = COADREAD-TP.mutsig.cluster.txt
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Clinical data file = COADREAD-TP.clin.merged.picked.txt
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Number of patients = 224
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Number of significantly mutated genes = 209
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Number of selected clinical features = 11
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Exclude genes that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For continuous numerical clinical features, two-tailed Student's t test with unequal variance (Lehmann and Romano 2005) was applied to compare the clinical values between tumors with and without gene mutations using 't.test' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.