
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/397974/COADREAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/COADREAD-TP/3148167/1.GDAC_mergedClustering.Finished/COADREAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=COADREAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"             "-oT=COADREAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=591, in cluster file=224, common to both=224
[1] 209 224
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             38             186 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             38             186 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            20            204 
  NRAS MUTATED NRAS WILD-TYPE 
            20            204 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              33              191 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              33              191 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
          160            64 
  APC MUTATED APC WILD-TYPE 
          160            64 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            22            202 
  BRAF MUTATED BRAF WILD-TYPE 
            22            202 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            96            128 
  KRAS MUTATED KRAS WILD-TYPE 
            96            128 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             198 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             198 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           120            104 
  TP53 MUTATED TP53 WILD-TYPE 
           120            104 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               25               199 
  FAM123B MUTATED FAM123B WILD-TYPE 
               25               199 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
           85           139 
  TTN MUTATED TTN WILD-TYPE 
           85           139 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             15             209 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             15             209 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              18              206 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              18              206 
[1] "FAT4 MUTATION ANALYSIS"
[1] 3
  FAT4 MUTATED FAT4 WILD-TYPE 
            39            185 
  FAT4 MUTATED FAT4 WILD-TYPE 
            39            185 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                220 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                220 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              14              210 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              14              210 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               19               205 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               19               205 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             22             202 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             22             202 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             39             185 
  LRP1B MUTATED LRP1B WILD-TYPE 
             39             185 
[1] "TNFRSF10C MUTATION ANALYSIS"
[1] 3
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 218 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 218 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              11              213 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              11              213 
[1] "KIAA1804 MUTATION ANALYSIS"
[1] 3
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                15                209 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                15                209 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             20             204 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             20             204 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             208 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             208 
[1] "SOX9 MUTATION ANALYSIS"
[1] 3
  SOX9 MUTATED SOX9 WILD-TYPE 
            10            214 
  SOX9 MUTATED SOX9 WILD-TYPE 
            10            214 
[1] "PRDM9 MUTATION ANALYSIS"
[1] 3
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             16             208 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             16             208 
[1] "PCBP1 MUTATION ANALYSIS"
[1] 3
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              6             218 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              6             218 
[1] "DMD MUTATION ANALYSIS"
[1] 3
  DMD MUTATED DMD WILD-TYPE 
           33           191 
  DMD MUTATED DMD WILD-TYPE 
           33           191 
[1] "CSMD1 MUTATION ANALYSIS"
[1] 3
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             26             198 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             26             198 
[1] "LIFR MUTATION ANALYSIS"
[1] 3
  LIFR MUTATED LIFR WILD-TYPE 
            18            206 
  LIFR MUTATED LIFR WILD-TYPE 
            18            206 
[1] "OR6N1 MUTATION ANALYSIS"
[1] 3
  OR6N1 MUTATED OR6N1 WILD-TYPE 
             10             214 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
             10             214 
[1] "CCDC160 MUTATION ANALYSIS"
[1] 3
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                7               217 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                7               217 
[1] "CNTN6 MUTATION ANALYSIS"
[1] 3
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             17             207 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             17             207 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              215 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              215 
[1] "SLITRK1 MUTATION ANALYSIS"
[1] 3
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               15               209 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               15               209 
[1] "CDH2 MUTATION ANALYSIS"
[1] 3
  CDH2 MUTATED CDH2 WILD-TYPE 
            16            208 
  CDH2 MUTATED CDH2 WILD-TYPE 
            16            208 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              7             217 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              7             217 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              213 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              213 
[1] "DKK2 MUTATION ANALYSIS"
[1] 3
  DKK2 MUTATED DKK2 WILD-TYPE 
             6            218 
  DKK2 MUTATED DKK2 WILD-TYPE 
             6            218 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             18             206 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             18             206 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           32           192 
  FLG MUTATED FLG WILD-TYPE 
           32           192 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              21              203 
  ARID1A MUTATED ARID1A WILD-TYPE 
              21              203 
[1] "KIAA1486 MUTATION ANALYSIS"
[1] 3
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                13                211 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                13                211 
[1] "ROBO1 MUTATION ANALYSIS"
[1] 3
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             18             206 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             18             206 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             24             200 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             24             200 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             16             208 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             16             208 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              8             216 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              8             216 
[1] "UBE2NL MUTATION ANALYSIS"
[1] 3
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               7              217 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               7              217 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               9              215 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               9              215 
[1] "ADAM29 MUTATION ANALYSIS"
[1] 3
  ADAM29 MUTATED ADAM29 WILD-TYPE 
              11              213 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
              11              213 
[1] "ATP10A MUTATION ANALYSIS"
[1] 3
  ATP10A MUTATED ATP10A WILD-TYPE 
              19              205 
  ATP10A MUTATED ATP10A WILD-TYPE 
              19              205 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             34             190 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             34             190 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               9              215 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               9              215 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             20             204 
  NALCN MUTATED NALCN WILD-TYPE 
             20             204 
[1] "OTOL1 MUTATION ANALYSIS"
[1] 3
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              8             216 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              8             216 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             7            217 
  PTEN MUTATED PTEN WILD-TYPE 
             7            217 
[1] "SDK1 MUTATION ANALYSIS"
[1] 3
  SDK1 MUTATED SDK1 WILD-TYPE 
            27            197 
  SDK1 MUTATED SDK1 WILD-TYPE 
            27            197 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            15            209 
  TLL1 MUTATED TLL1 WILD-TYPE 
            15            209 
[1] "TMEM132D MUTATION ANALYSIS"
[1] 3
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                19                205 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                19                205 
[1] "TRPC4 MUTATION ANALYSIS"
[1] 3
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             17             207 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             17             207 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           25           199 
  ATM MUTATED ATM WILD-TYPE 
           25           199 
[1] "GPC6 MUTATION ANALYSIS"
[1] 3
  GPC6 MUTATED GPC6 WILD-TYPE 
            10            214 
  GPC6 MUTATED GPC6 WILD-TYPE 
            10            214 
[1] "CDH8 MUTATION ANALYSIS"
[1] 3
  CDH8 MUTATED CDH8 WILD-TYPE 
            14            210 
  CDH8 MUTATED CDH8 WILD-TYPE 
            14            210 
[1] "MGC26647 MUTATION ANALYSIS"
[1] 3
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                217 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                217 
[1] "DKK4 MUTATION ANALYSIS"
[1] 3
  DKK4 MUTATED DKK4 WILD-TYPE 
             7            217 
  DKK4 MUTATED DKK4 WILD-TYPE 
             7            217 
[1] "PTPRM MUTATION ANALYSIS"
[1] 3
  PTPRM MUTATED PTPRM WILD-TYPE 
             20             204 
  PTPRM MUTATED PTPRM WILD-TYPE 
             20             204 
[1] "AFF2 MUTATION ANALYSIS"
[1] 3
  AFF2 MUTATED AFF2 WILD-TYPE 
            17            207 
  AFF2 MUTATED AFF2 WILD-TYPE 
            17            207 
[1] "NCAM2 MUTATION ANALYSIS"
[1] 3
  NCAM2 MUTATED NCAM2 WILD-TYPE 
             12             212 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
             12             212 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             216 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             216 
[1] "RYR2 MUTATION ANALYSIS"
[1] 3
  RYR2 MUTATED RYR2 WILD-TYPE 
            29            195 
  RYR2 MUTATED RYR2 WILD-TYPE 
            29            195 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            15            209 
  CDH9 MUTATED CDH9 WILD-TYPE 
            15            209 
[1] "GRIK3 MUTATION ANALYSIS"
[1] 3
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             17             207 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             17             207 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
             6            218 
  ELF3 MUTATED ELF3 WILD-TYPE 
             6            218 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             17             207 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             17             207 
[1] "FAM133A MUTATION ANALYSIS"
[1] 3
  FAM133A MUTATED FAM133A WILD-TYPE 
                7               217 
  FAM133A MUTATED FAM133A WILD-TYPE 
                7               217 
[1] "IL1RAPL2 MUTATION ANALYSIS"
[1] 3
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                10                214 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                10                214 
[1] "CCBP2 MUTATION ANALYSIS"
[1] 3
  CCBP2 MUTATED CCBP2 WILD-TYPE 
             10             214 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
             10             214 
[1] "OPCML MUTATION ANALYSIS"
[1] 3
  OPCML MUTATED OPCML WILD-TYPE 
             10             214 
  OPCML MUTATED OPCML WILD-TYPE 
             10             214 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             13             211 
  CDH18 MUTATED CDH18 WILD-TYPE 
             13             211 
[1] "OR2L13 MUTATION ANALYSIS"
[1] 3
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              10              214 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              10              214 
[1] "LRRN3 MUTATION ANALYSIS"
[1] 3
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             10             214 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             10             214 
[1] "BAI3 MUTATION ANALYSIS"
[1] 3
  BAI3 MUTATED BAI3 WILD-TYPE 
            18            206 
  BAI3 MUTATED BAI3 WILD-TYPE 
            18            206 
[1] "MGC42105 MUTATION ANALYSIS"
[1] 3
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                11                213 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                11                213 
[1] "TXNDC3 MUTATION ANALYSIS"
[1] 3
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              11              213 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              11              213 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             211 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             211 
[1] "UNC13C MUTATION ANALYSIS"
[1] 3
  UNC13C MUTATED UNC13C WILD-TYPE 
              17              207 
  UNC13C MUTATED UNC13C WILD-TYPE 
              17              207 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             15             209 
  SCN7A MUTATED SCN7A WILD-TYPE 
             15             209 
[1] "ACOT4 MUTATION ANALYSIS"
[1] 3
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             221 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             221 
[1] "GGT1 MUTATION ANALYSIS"
[1] 3
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            221 
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            221 
[1] "GRIA1 MUTATION ANALYSIS"
[1] 3
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             15             209 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             15             209 
[1] "ING1 MUTATION ANALYSIS"
[1] 3
  ING1 MUTATED ING1 WILD-TYPE 
             6            218 
  ING1 MUTATED ING1 WILD-TYPE 
             6            218 
[1] "PCDHA10 MUTATION ANALYSIS"
[1] 3
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
               10               214 
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
               10               214 
[1] "ZNF208 MUTATION ANALYSIS"
[1] 3
  ZNF208 MUTATED ZNF208 WILD-TYPE 
              11              213 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
              11              213 
[1] "CRTC1 MUTATION ANALYSIS"
[1] 3
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              6             218 
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              6             218 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             13             211 
  FAM5C MUTATED FAM5C WILD-TYPE 
             13             211 
[1] "GUCY1A3 MUTATION ANALYSIS"
[1] 3
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               12               212 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               12               212 
[1] "FAM22F MUTATION ANALYSIS"
[1] 3
  FAM22F MUTATED FAM22F WILD-TYPE 
               9              215 
  FAM22F MUTATED FAM22F WILD-TYPE 
               9              215 
[1] "CHRDL1 MUTATION ANALYSIS"
[1] 3
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
              11              213 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
              11              213 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             10             214 
  EDNRB MUTATED EDNRB WILD-TYPE 
             10             214 
[1] "IFT80 MUTATION ANALYSIS"
[1] 3
  IFT80 MUTATED IFT80 WILD-TYPE 
             10             214 
  IFT80 MUTATED IFT80 WILD-TYPE 
             10             214 
[1] "ANK2 MUTATION ANALYSIS"
[1] 3
  ANK2 MUTATED ANK2 WILD-TYPE 
            30            194 
  ANK2 MUTATED ANK2 WILD-TYPE 
            30            194 
[1] "CASP14 MUTATION ANALYSIS"
[1] 3
  CASP14 MUTATED CASP14 WILD-TYPE 
               8              216 
  CASP14 MUTATED CASP14 WILD-TYPE 
               8              216 
[1] "LASS3 MUTATION ANALYSIS"
[1] 3
  LASS3 MUTATED LASS3 WILD-TYPE 
              9             215 
  LASS3 MUTATED LASS3 WILD-TYPE 
              9             215 
[1] "P2RY10 MUTATION ANALYSIS"
[1] 3
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              217 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              217 
[1] "CNTN1 MUTATION ANALYSIS"
[1] 3
  CNTN1 MUTATED CNTN1 WILD-TYPE 
             14             210 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
             14             210 
[1] "ISL1 MUTATION ANALYSIS"
[1] 3
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            216 
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            216 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             15             209 
  ARID2 MUTATED ARID2 WILD-TYPE 
             15             209 
[1] "EIF4A2 MUTATION ANALYSIS"
[1] 3
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               5              219 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               5              219 
[1] "OR51V1 MUTATION ANALYSIS"
[1] 3
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              215 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              215 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              21              203 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              21              203 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             210 
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             210 
[1] "CHST9 MUTATION ANALYSIS"
[1] 3
  CHST9 MUTATED CHST9 WILD-TYPE 
              8             216 
  CHST9 MUTATED CHST9 WILD-TYPE 
              8             216 
[1] "HTR3B MUTATION ANALYSIS"
[1] 3
  HTR3B MUTATED HTR3B WILD-TYPE 
              6             218 
  HTR3B MUTATED HTR3B WILD-TYPE 
              6             218 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              214 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              214 
[1] "HCN1 MUTATION ANALYSIS"
[1] 3
  HCN1 MUTATED HCN1 WILD-TYPE 
            10            214 
  HCN1 MUTATED HCN1 WILD-TYPE 
            10            214 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             10             214 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             10             214 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             28             196 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             28             196 
[1] "DCAF4L2 MUTATION ANALYSIS"
[1] 3
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
               11               213 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
               11               213 
[1] "DACH2 MUTATION ANALYSIS"
[1] 3
  DACH2 MUTATED DACH2 WILD-TYPE 
             12             212 
  DACH2 MUTATED DACH2 WILD-TYPE 
             12             212 
[1] "DOCK2 MUTATION ANALYSIS"
[1] 3
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             21             203 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             21             203 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               14               210 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               14               210 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             12             212 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             12             212 
[1] "DPP10 MUTATION ANALYSIS"
[1] 3
  DPP10 MUTATED DPP10 WILD-TYPE 
             13             211 
  DPP10 MUTATED DPP10 WILD-TYPE 
             13             211 
[1] "EVC2 MUTATION ANALYSIS"
[1] 3
  EVC2 MUTATED EVC2 WILD-TYPE 
            17            207 
  EVC2 MUTATED EVC2 WILD-TYPE 
            17            207 
[1] "C15ORF2 MUTATION ANALYSIS"
[1] 3
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               12               212 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               12               212 
[1] "NLRP5 MUTATION ANALYSIS"
[1] 3
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             12             212 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             12             212 
[1] "BTNL8 MUTATION ANALYSIS"
[1] 3
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             221 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             221 
[1] "KLK2 MUTATION ANALYSIS"
[1] 3
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            221 
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            221 
[1] "LUZP2 MUTATION ANALYSIS"
[1] 3
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              6             218 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              6             218 
[1] "NXF5 MUTATION ANALYSIS"
[1] 3
  NXF5 MUTATED NXF5 WILD-TYPE 
             7            217 
  NXF5 MUTATED NXF5 WILD-TYPE 
             7            217 
[1] "PCDHB5 MUTATION ANALYSIS"
[1] 3
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              14              210 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              14              210 
[1] "LOXL2 MUTATION ANALYSIS"
[1] 3
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              9             215 
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              9             215 
[1] "UBQLNL MUTATION ANALYSIS"
[1] 3
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               5              219 
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               5              219 
[1] "MYO1B MUTATION ANALYSIS"
[1] 3
  MYO1B MUTATED MYO1B WILD-TYPE 
             13             211 
  MYO1B MUTATED MYO1B WILD-TYPE 
             13             211 
[1] "SPATA17 MUTATION ANALYSIS"
[1] 3
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                9               215 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                9               215 
[1] "RIMS1 MUTATION ANALYSIS"
[1] 3
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             15             209 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             15             209 
[1] "COL12A1 MUTATION ANALYSIS"
[1] 3
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               21               203 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               21               203 
[1] "JAKMIP2 MUTATION ANALYSIS"
[1] 3
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               13               211 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               13               211 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             14             210 
  CDH10 MUTATED CDH10 WILD-TYPE 
             14             210 
[1] "EPHA5 MUTATION ANALYSIS"
[1] 3
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             13             211 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             13             211 
[1] "ODZ1 MUTATION ANALYSIS"
[1] 3
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            22            202 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            22            202 
[1] "POSTN MUTATION ANALYSIS"
[1] 3
  POSTN MUTATED POSTN WILD-TYPE 
             11             213 
  POSTN MUTATED POSTN WILD-TYPE 
             11             213 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             47             177 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             47             177 
[1] "ZCWPW2 MUTATION ANALYSIS"
[1] 3
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               7              217 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               7              217 
[1] "ZEB2 MUTATION ANALYSIS"
[1] 3
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            209 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            209 
[1] "TUSC3 MUTATION ANALYSIS"
[1] 3
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7             217 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7             217 
[1] "CACNG7 MUTATION ANALYSIS"
[1] 3
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               6              218 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               6              218 
[1] "RWDD2B MUTATION ANALYSIS"
[1] 3
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               8              216 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               8              216 
[1] "SLC25A13 MUTATION ANALYSIS"
[1] 3
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 7                217 
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 7                217 
[1] "DPF2 MUTATION ANALYSIS"
[1] 3
  DPF2 MUTATED DPF2 WILD-TYPE 
             4            220 
  DPF2 MUTATED DPF2 WILD-TYPE 
             4            220 
[1] "PCDH10 MUTATION ANALYSIS"
[1] 3
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              17              207 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              17              207 
[1] "CDH12 MUTATION ANALYSIS"
[1] 3
  CDH12 MUTATED CDH12 WILD-TYPE 
             13             211 
  CDH12 MUTATED CDH12 WILD-TYPE 
             13             211 
[1] "MCF2 MUTATION ANALYSIS"
[1] 3
  MCF2 MUTATED MCF2 WILD-TYPE 
            12            212 
  MCF2 MUTATED MCF2 WILD-TYPE 
            12            212 
[1] "NCKAP5 MUTATION ANALYSIS"
[1] 3
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              15              209 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              15              209 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             13             211 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             13             211 
[1] "ATP7A MUTATION ANALYSIS"
[1] 3
  ATP7A MUTATED ATP7A WILD-TYPE 
              6             218 
  ATP7A MUTATED ATP7A WILD-TYPE 
              6             218 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            12            212 
  TPTE MUTATED TPTE WILD-TYPE 
            12            212 
[1] "OR8B4 MUTATION ANALYSIS"
[1] 3
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              6             218 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              6             218 
[1] "SFMBT2 MUTATION ANALYSIS"
[1] 3
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              13              211 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              13              211 
[1] "FLRT2 MUTATION ANALYSIS"
[1] 3
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             13             211 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             13             211 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             9            215 
  BCHE MUTATED BCHE WILD-TYPE 
             9            215 
[1] "C8B MUTATION ANALYSIS"
[1] 3
  C8B MUTATED C8B WILD-TYPE 
           10           214 
  C8B MUTATED C8B WILD-TYPE 
           10           214 
[1] "FREM2 MUTATION ANALYSIS"
[1] 3
  FREM2 MUTATED FREM2 WILD-TYPE 
             23             201 
  FREM2 MUTATED FREM2 WILD-TYPE 
             23             201 
[1] "ZNF167 MUTATION ANALYSIS"
[1] 3
  ZNF167 MUTATED ZNF167 WILD-TYPE 
               7              217 
  ZNF167 MUTATED ZNF167 WILD-TYPE 
               7              217 
[1] "GABRG1 MUTATION ANALYSIS"
[1] 3
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8              216 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8              216 
[1] "SAT1 MUTATION ANALYSIS"
[1] 3
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            220 
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            220 
[1] "CHD4 MUTATION ANALYSIS"
[1] 3
  CHD4 MUTATED CHD4 WILD-TYPE 
            17            207 
  CHD4 MUTATED CHD4 WILD-TYPE 
            17            207 
[1] "PCDHB2 MUTATION ANALYSIS"
[1] 3
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              14              210 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              14              210 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             13             211 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             13             211 
[1] "SH3GL3 MUTATION ANALYSIS"
[1] 3
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               8              216 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               8              216 
[1] "ZFPM2 MUTATION ANALYSIS"
[1] 3
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
              6             218 
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
              6             218 
[1] "CACNG3 MUTATION ANALYSIS"
[1] 3
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               8              216 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               8              216 
[1] "POTEB MUTATION ANALYSIS"
[1] 3
  POTEB MUTATED POTEB WILD-TYPE 
              8             216 
  POTEB MUTATED POTEB WILD-TYPE 
              8             216 
[1] "GRIN2A MUTATION ANALYSIS"
[1] 3
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              19              205 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              19              205 
[1] "NRXN3 MUTATION ANALYSIS"
[1] 3
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             17             207 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             17             207 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             218 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             218 
[1] "SPATA8 MUTATION ANALYSIS"
[1] 3
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              221 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              221 
[1] "OR2M2 MUTATION ANALYSIS"
[1] 3
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             218 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             218 
[1] "SORCS1 MUTATION ANALYSIS"
[1] 3
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              15              209 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              15              209 
[1] "IL18R1 MUTATION ANALYSIS"
[1] 3
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              10              214 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              10              214 
[1] "DPY19L1 MUTATION ANALYSIS"
[1] 3
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
                5               219 
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
                5               219 
[1] "C16ORF45 MUTATION ANALYSIS"
[1] 3
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 3                221 
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 3                221 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              9             215 
  INHBA MUTATED INHBA WILD-TYPE 
              9             215 
[1] "MIER3 MUTATION ANALYSIS"
[1] 3
  MIER3 MUTATED MIER3 WILD-TYPE 
             11             213 
  MIER3 MUTATED MIER3 WILD-TYPE 
             11             213 
[1] "ZNF585A MUTATION ANALYSIS"
[1] 3
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               10               214 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               10               214 
[1] "TMPRSS13 MUTATION ANALYSIS"
[1] 3
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 4                220 
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 4                220 
[1] "FSTL5 MUTATION ANALYSIS"
[1] 3
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             11             213 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             11             213 
[1] "DOK5 MUTATION ANALYSIS"
[1] 3
  DOK5 MUTATED DOK5 WILD-TYPE 
             6            218 
  DOK5 MUTATED DOK5 WILD-TYPE 
             6            218 
[1] "ZNF99 MUTATION ANALYSIS"
[1] 3
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             11             213 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             11             213 
[1] "GML MUTATION ANALYSIS"
[1] 3
  GML MUTATED GML WILD-TYPE 
            6           218 
  GML MUTATED GML WILD-TYPE 
            6           218 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            5           219 
  B2M MUTATED B2M WILD-TYPE 
            5           219 
[1] "PPP2R2B MUTATION ANALYSIS"
[1] 3
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                3               221 
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                3               221 
[1] "LRTM1 MUTATION ANALYSIS"
[1] 3
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              7             217 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              7             217 
[1] "OR10G9 MUTATION ANALYSIS"
[1] 3
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               6              218 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               6              218 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             210 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             210 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            216 
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            216 
[1] "SYT16 MUTATION ANALYSIS"
[1] 3
  SYT16 MUTATED SYT16 WILD-TYPE 
              9             215 
  SYT16 MUTATED SYT16 WILD-TYPE 
              9             215 
[1] "LPHN3 MUTATION ANALYSIS"
[1] 3
  LPHN3 MUTATED LPHN3 WILD-TYPE 
             13             211 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
             13             211 
[1] "LRP2 MUTATION ANALYSIS"
[1] 3
  LRP2 MUTATED LRP2 WILD-TYPE 
            35            189 
  LRP2 MUTATED LRP2 WILD-TYPE 
            35            189 
[1] "SOHLH2 MUTATION ANALYSIS"
[1] 3
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               9              215 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               9              215 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             9            215 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             9            215 
[1] "DSEL MUTATION ANALYSIS"
[1] 3
  DSEL MUTATED DSEL WILD-TYPE 
            14            210 
  DSEL MUTATED DSEL WILD-TYPE 
            14            210 
[1] "RNASE11 MUTATION ANALYSIS"
[1] 3
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               219 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               219 
[1] "MDGA2 MUTATION ANALYSIS"
[1] 3
  MDGA2 MUTATED MDGA2 WILD-TYPE 
             10             214 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
             10             214 
[1] "RBMS3 MUTATION ANALYSIS"
[1] 3
  RBMS3 MUTATED RBMS3 WILD-TYPE 
              6             218 
  RBMS3 MUTATED RBMS3 WILD-TYPE 
              6             218 
[1] "COL6A6 MUTATION ANALYSIS"
[1] 3
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              16              208 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              16              208 
[1] "TMBIM4 MUTATION ANALYSIS"
[1] 3
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               4              220 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               4              220 
[1] "FAM135B MUTATION ANALYSIS"
[1] 3
  FAM135B MUTATED FAM135B WILD-TYPE 
               15               209 
  FAM135B MUTATED FAM135B WILD-TYPE 
               15               209 
[1] "CYP7B1 MUTATION ANALYSIS"
[1] 3
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              217 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              217 
[1] "SLC16A7 MUTATION ANALYSIS"
[1] 3
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                9               215 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                9               215 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 224 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "MRNA_CNMF"            "MRNA_CHIERARCHICAL"   "CN_CNMF"             
[4] "METHLYATION_CNMF"     "RPPA_CNMF"            "RPPA_CHIERARCHICAL"  
[7] "MIRSEQ_CNMF"          "MIRSEQ_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 224 columns, 0 survival variables, and 8 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = FBXW7 MUTATION ANALYSIS
D1V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            12              32
  CLUS_2             5              52
  CLUS_3             7              60
  CLUS_4             9              28
D1V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            17              42
  CLUS_2            12              96
  CLUS_3             4              34
D1V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              82
  CLUS_2            24              59
  CLUS_3             8              28
  CLUS_4             2              14
D1V4, multiclass
[1] "Remove cluster labels:" "FBXW7 MUTATED"         
clus
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              2               5 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A036 
"FBXW7 WILD-TYPE" 
D1V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             8              36
  CLUS_2             9              62
  CLUS_3             2              18
  CLUS_4            10              12
D1V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             3              17
  CLUS_2            18              91
  CLUS_3             8              11
  CLUS_4             0               9
D1V7, binary
                 cls
clus                0   1
  FBXW7 MUTATED    36   0
  FBXW7 WILD-TYPE 163   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     36    0
  FBXW7 WILD-TYPE  163    8
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            36             163
  CLUS_3             0               8
D1V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            31             159
  CLUS_2             4               6
  CLUS_3             1               6

Clustering(2) Variable = NRAS MUTATION ANALYSIS
D2V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             44
  CLUS_2            8             49
  CLUS_3            6             61
  CLUS_4            5             32
D2V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            5             54
  CLUS_2           13             95
  CLUS_3            1             37
D2V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            9             77
  CLUS_2           10             73
  CLUS_3            1             35
  CLUS_4            0             16
D2V4, multiclass
D2V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2             42
  CLUS_2            9             62
  CLUS_3            0             20
  CLUS_4            2             20
D2V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             20
  CLUS_2           10             99
  CLUS_3            2             17
  CLUS_4            1              8
D2V7, binary
                cls
clus               0   1
  NRAS MUTATED    18   0
  NRAS WILD-TYPE 181   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     18    0
  NRAS WILD-TYPE  181    8
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           18            181
  CLUS_3            0              8
D2V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           17            173
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(3) Variable = PIK3CA MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8               36
  CLUS_2              4               53
  CLUS_3              7               60
  CLUS_4              7               30
D3V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               50
  CLUS_2             13               95
  CLUS_3              4               34
D3V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5               81
  CLUS_2             22               61
  CLUS_3              2               34
  CLUS_4              3               13
D3V4, multiclass
[1] "Remove cluster labels:" "PIK3CA MUTATED"        
clus
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               2                5 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A026 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A036 
"PIK3CA WILD-TYPE" 
D3V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             11               33
  CLUS_2              9               62
  CLUS_3              1               19
  CLUS_4              6               16
D3V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6               14
  CLUS_2             16               93
  CLUS_3              5               14
  CLUS_4              0                9
D3V7, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    26   3
  PIK3CA WILD-TYPE 173   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     26    3
  PIK3CA WILD-TYPE  173    5
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             26              173
  CLUS_3              3                5
D3V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             27              163
  CLUS_2              1                9
  CLUS_3              1                6

Clustering(4) Variable = APC MUTATION ANALYSIS
D4V1, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          23            21
  CLUS_2          45            12
  CLUS_3          50            17
  CLUS_4          29             8
D4V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          33            26
  CLUS_2          84            24
  CLUS_3          30             8
D4V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          65            21
  CLUS_2          52            31
  CLUS_3          28             8
  CLUS_4          12             4
D4V4, multiclass
[1] "Remove cluster labels:" "APC WILD-TYPE"         
clus
  APC MUTATED APC WILD-TYPE 
            6             1 
 TCGA-AG-A01W  TCGA-AG-A01Y  TCGA-AG-A020  TCGA-AG-A026  TCGA-AG-A02N 
"APC MUTATED" "APC MUTATED" "APC MUTATED" "APC MUTATED" "APC MUTATED" 
 TCGA-AG-A036 
"APC MUTATED" 
D4V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          34            10
  CLUS_2          47            24
  CLUS_3          14             6
  CLUS_4          16             6
D4V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          16             4
  CLUS_2          75            34
  CLUS_3          15             4
  CLUS_4           5             4
D4V7, binary
               cls
clus              0   1
  APC MUTATED   144   5
  APC WILD-TYPE  55   3
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED    144    5
  APC WILD-TYPE   55    3
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1         144            55
  CLUS_3           5             3
D4V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1         135            55
  CLUS_2           9             1
  CLUS_3           5             2

Clustering(5) Variable = BRAF MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           13             31
  CLUS_2            1             56
  CLUS_3            1             66
  CLUS_4            5             32
D5V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           17             42
  CLUS_2            2            106
  CLUS_3            1             37
D5V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             85
  CLUS_2           18             65
  CLUS_3            3             33
  CLUS_4            0             16
D5V4, multiclass
[1] "Remove cluster labels:" "BRAF MUTATED"          
clus
  BRAF MUTATED BRAF WILD-TYPE 
             1              6 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
D5V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3             41
  CLUS_2            4             67
  CLUS_3            4             16
  CLUS_4            2             20
D5V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             19
  CLUS_2            8            101
  CLUS_3            2             17
  CLUS_4            2              7
D5V7, binary
                cls
clus               0   1
  BRAF MUTATED    21   1
  BRAF WILD-TYPE 178   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     21    1
  BRAF WILD-TYPE  178    7
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           21            178
  CLUS_3            1              7
D5V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           21            169
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(6) Variable = KRAS MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           13             31
  CLUS_2           16             41
  CLUS_3           31             36
  CLUS_4           25             12
D6V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           25             34
  CLUS_2           50             58
  CLUS_3           10             28
D6V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           32             54
  CLUS_2           40             43
  CLUS_3           15             21
  CLUS_4            8              8
D6V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            0              2
  CLUS_2            3              1
  CLUS_3            0              1
D6V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           19             25
  CLUS_2           36             35
  CLUS_3            7             13
  CLUS_4           10             12
D6V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9             11
  CLUS_2           50             59
  CLUS_3            9             10
  CLUS_4            4              5
D6V7, binary
                cls
clus               0   1
  KRAS MUTATED    80   6
  KRAS WILD-TYPE 119   2
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     80    6
  KRAS WILD-TYPE  119    2
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           80            119
  CLUS_3            6              2
D6V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           79            111
  CLUS_2            5              5
  CLUS_3            2              5

Clustering(7) Variable = SMAD4 MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7              37
  CLUS_2             4              53
  CLUS_3             4              63
  CLUS_4             9              28
D7V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            10              49
  CLUS_2            10              98
  CLUS_3             4              34
D7V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             4              82
  CLUS_2            15              68
  CLUS_3             5              31
  CLUS_4             2              14
D7V4, multiclass
[1] "Remove cluster labels:" "SMAD4 MUTATED"         
clus
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A026 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
D7V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              38
  CLUS_2            10              61
  CLUS_3             4              16
  CLUS_4             1              21
D7V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             2              18
  CLUS_2            14              95
  CLUS_3             2              17
  CLUS_4             3               6
D7V7, binary
                 cls
clus                0   1
  SMAD4 MUTATED    24   1
  SMAD4 WILD-TYPE 175   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     24    1
  SMAD4 WILD-TYPE  175    7
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            24             175
  CLUS_3             1               7
D7V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            24             166
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(8) Variable = TP53 MUTATION ANALYSIS
D8V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           18             26
  CLUS_2           41             16
  CLUS_3           39             28
  CLUS_4           12             25
D8V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24             35
  CLUS_2           57             51
  CLUS_3           29              9
D8V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           68             18
  CLUS_2           22             61
  CLUS_3           19             17
  CLUS_4            9              7
D8V4, multiclass
[1] "Remove cluster labels:" "TP53 WILD-TYPE"        
clus
  TP53 MUTATED TP53 WILD-TYPE 
             6              1 
  TCGA-AG-A01W   TCGA-AG-A01Y   TCGA-AG-A020   TCGA-AG-A026   TCGA-AG-A02N 
"TP53 MUTATED" "TP53 MUTATED" "TP53 MUTATED" "TP53 MUTATED" "TP53 MUTATED" 
  TCGA-AG-A036 
"TP53 MUTATED" 
D8V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           19             25
  CLUS_2           36             35
  CLUS_3           13              7
  CLUS_4           11             11
D8V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            8             12
  CLUS_2           57             52
  CLUS_3            9             10
  CLUS_4            5              4
D8V7, binary
                cls
clus               0   1
  TP53 MUTATED   111   1
  TP53 WILD-TYPE  88   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED    111    1
  TP53 WILD-TYPE   88    7
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          111             88
  CLUS_3            1              7
D8V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           99             91
  CLUS_2            7              3
  CLUS_3            6              1

Clustering(9) Variable = FAM123B MUTATION ANALYSIS
D9V1, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               9                35
  CLUS_2               5                52
  CLUS_3               4                63
  CLUS_4               6                31
D9V2, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              12                47
  CLUS_2              11                97
  CLUS_3               1                37
D9V3, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               6                80
  CLUS_2              17                66
  CLUS_3               1                35
  CLUS_4               0                16
D9V4, multiclass
[1] "Remove cluster labels:" "FAM123B MUTATED"       
clus
  FAM123B MUTATED FAM123B WILD-TYPE 
                1                 6 
       TCGA-A6-2672        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A036 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
D9V5, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               3                41
  CLUS_2               7                64
  CLUS_3               2                18
  CLUS_4               4                18
D9V6, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               1                19
  CLUS_2              12                97
  CLUS_3               3                16
  CLUS_4               0                 9
D9V7, binary
                   cls
clus                  0   1
  FAM123B MUTATED    23   1
  FAM123B WILD-TYPE 176   7
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     23    1
  FAM123B WILD-TYPE  176    7
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              23               176
  CLUS_3               1                 7
D9V8, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              22               168
  CLUS_2               2                 8
  CLUS_3               0                 7

Clustering(10) Variable = TTN MUTATION ANALYSIS
D10V1, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          24            20
  CLUS_2          17            40
  CLUS_3          17            50
  CLUS_4          17            20
D10V2, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          29            30
  CLUS_2          33            75
  CLUS_3          13            25
D10V3, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          24            62
  CLUS_2          45            38
  CLUS_3          12            24
  CLUS_4           3            13
D10V4, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1           1             1
  CLUS_2           1             3
  CLUS_3           1             0
D10V5, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          18            26
  CLUS_2          23            48
  CLUS_3           6            14
  CLUS_4          11            11
D10V6, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1           8            12
  CLUS_2          39            70
  CLUS_3           8            11
  CLUS_4           3             6
D10V7, binary
               cls
clus              0   1
  TTN MUTATED    72   5
  TTN WILD-TYPE 127   3
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     72    5
  TTN WILD-TYPE  127    3
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          72           127
  CLUS_3           5             3
D10V8, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          70           120
  CLUS_2           4             6
  CLUS_3           3             4

Clustering(11) Variable = SMAD2 MUTATION ANALYSIS
D11V1, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             2              55
  CLUS_3             2              65
  CLUS_4             5              32
D11V2, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             5             103
  CLUS_3             3              35
D11V3, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             8              75
  CLUS_3             0              36
  CLUS_4             3              13
D11V4, multiclass
[1] "Remove cluster labels:" "SMAD2 MUTATED"         
clus
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
D11V5, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             4              67
  CLUS_3             1              19
  CLUS_4             3              19
D11V6, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6             103
  CLUS_3             3              16
  CLUS_4             1               8
D11V7, binary
                 cls
clus                0   1
  SMAD2 MUTATED    14   0
  SMAD2 WILD-TYPE 185   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED     14    0
  SMAD2 WILD-TYPE  185    8
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1            14             185
  CLUS_3             0               8
D11V8, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1            13             177
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(12) Variable = TCF7L2 MUTATION ANALYSIS
D12V1, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              4               53
  CLUS_3              5               62
  CLUS_4              3               34
D12V2, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              9               99
  CLUS_3              4               34
D12V3, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              7               79
  CLUS_2              6               77
  CLUS_3              2               34
  CLUS_4              3               13
D12V4, multiclass
D12V5, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              5               66
  CLUS_3              1               19
  CLUS_4              3               19
D12V6, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              9              100
  CLUS_3              2               17
  CLUS_4              0                9
D12V7, binary
                  cls
clus                 0   1
  TCF7L2 MUTATED    15   0
  TCF7L2 WILD-TYPE 184   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     15    0
  TCF7L2 WILD-TYPE  184    8
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1             15              184
  CLUS_3              0                8
D12V8, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1             13              177
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(13) Variable = FAT4 MUTATION ANALYSIS
D13V1, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1           14             30
  CLUS_2            5             52
  CLUS_3            8             59
  CLUS_4            7             30
D13V2, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1           15             44
  CLUS_2           14             94
  CLUS_3            5             33
D13V3, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1            6             80
  CLUS_2           27             56
  CLUS_3            3             33
  CLUS_4            2             14
D13V4, multiclass
D13V5, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1            7             37
  CLUS_2           15             56
  CLUS_3            2             18
  CLUS_4            3             19
D13V6, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1            1             19
  CLUS_2           22             87
  CLUS_3            2             17
  CLUS_4            2              7
D13V7, binary
                cls
clus               0   1
  FAT4 MUTATED    35   2
  FAT4 WILD-TYPE 164   6
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     35    2
  FAT4 WILD-TYPE  164    6
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1           35            164
  CLUS_3            2              6
D13V8, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1           33            157
  CLUS_2            2              8
  CLUS_3            2              5

Clustering(14) Variable = KRTAP5-5 MUTATION ANALYSIS
D14V1, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                0                 57
  CLUS_3                3                 64
  CLUS_4                0                 37
D14V2, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 58
  CLUS_2                2                106
  CLUS_3                1                 37
D14V3, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                 84
  CLUS_2                1                 82
  CLUS_3                0                 36
  CLUS_4                1                 15
D14V4, multiclass
D14V5, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                 44
  CLUS_2                3                 68
  CLUS_3                1                 19
  CLUS_4                0                 22
D14V6, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                4                105
  CLUS_3                0                 19
  CLUS_4                0                  9
D14V7, binary
                    cls
clus                   0   1
  KRTAP5-5 MUTATED     3   0
  KRTAP5-5 WILD-TYPE 196   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      3    0
  KRTAP5-5 WILD-TYPE  196    8
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                3                196
  CLUS_3                0                  8
D14V8, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                3                187
  CLUS_2                0                 10
  CLUS_3                0                  7

Clustering(15) Variable = ACVR1B MUTATION ANALYSIS
D15V1, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              4               40
  CLUS_2              1               56
  CLUS_3              2               65
  CLUS_4              4               33
D15V2, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              5               54
  CLUS_2              6              102
  CLUS_3              0               38
D15V3, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              2               84
  CLUS_2             10               73
  CLUS_3              1               35
  CLUS_4              1               15
D15V4, multiclass
D15V5, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              2               42
  CLUS_2              6               65
  CLUS_3              0               20
  CLUS_4              3               19
D15V6, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1               19
  CLUS_2              7              102
  CLUS_3              3               16
  CLUS_4              0                9
D15V7, binary
                  cls
clus                 0   1
  ACVR1B MUTATED    13   1
  ACVR1B WILD-TYPE 186   7
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED     13    1
  ACVR1B WILD-TYPE  186    7
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1             13              186
  CLUS_3              1                7
D15V8, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1             13              177
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(16) Variable = WBSCR17 MUTATION ANALYSIS
D16V1, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               7                37
  CLUS_2               3                54
  CLUS_3               3                64
  CLUS_4               5                32
D16V2, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               8                51
  CLUS_2               7               101
  CLUS_3               3                35
D16V3, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               4                82
  CLUS_2              12                71
  CLUS_3               2                34
  CLUS_4               1                15
D16V4, multiclass
D16V5, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               4                40
  CLUS_2               4                67
  CLUS_3               2                18
  CLUS_4               2                20
D16V6, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               8               101
  CLUS_3               1                18
  CLUS_4               2                 7
D16V7, binary
                   cls
clus                  0   1
  WBSCR17 MUTATED    18   1
  WBSCR17 WILD-TYPE 181   7
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     18    1
  WBSCR17 WILD-TYPE  181    7
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1              18               181
  CLUS_3               1                 7
D16V8, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1              17               173
  CLUS_2               1                 9
  CLUS_3               1                 6

Clustering(17) Variable = PCDH9 MUTATION ANALYSIS
D17V1, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             5              52
  CLUS_3             6              61
  CLUS_4             5              32
D17V2, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             7              52
  CLUS_2            12              96
  CLUS_3             2              36
D17V3, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             7              79
  CLUS_2            14              69
  CLUS_3             1              35
  CLUS_4             0              16
D17V4, multiclass
[1] "Remove cluster labels:" "PCDH9 MUTATED"         
clus
  PCDH9 MUTATED PCDH9 WILD-TYPE 
              2               5 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A036 
"PCDH9 WILD-TYPE" 
D17V5, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             5              66
  CLUS_3             2              18
  CLUS_4             4              18
D17V6, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             8             101
  CLUS_3             3              16
  CLUS_4             1               8
D17V7, binary
                 cls
clus                0   1
  PCDH9 MUTATED    19   1
  PCDH9 WILD-TYPE 180   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     19    1
  PCDH9 WILD-TYPE  180    7
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1            19             180
  CLUS_3             1               7
D17V8, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1            19             171
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(18) Variable = LRP1B MUTATION ANALYSIS
D18V1, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            14              30
  CLUS_2             6              51
  CLUS_3             6              61
  CLUS_4            10              27
D18V2, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            18              41
  CLUS_2            11              97
  CLUS_3             7              31
D18V3, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            10              76
  CLUS_2            24              59
  CLUS_3             4              32
  CLUS_4             0              16
D18V4, multiclass
[1] "Remove cluster labels:" "LRP1B MUTATED"         
clus
  LRP1B MUTATED LRP1B WILD-TYPE 
              2               5 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N 
"LRP1B WILD-TYPE" 
D18V5, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             9              35
  CLUS_2             7              64
  CLUS_3             1              19
  CLUS_4             5              17
D18V6, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             3              17
  CLUS_2            12              97
  CLUS_3             5              14
  CLUS_4             2               7
D18V7, binary
                 cls
clus                0   1
  LRP1B MUTATED    34   1
  LRP1B WILD-TYPE 165   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     34    1
  LRP1B WILD-TYPE  165    7
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            34             165
  CLUS_3             1               7
D18V8, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            31             159
  CLUS_2             4               6
  CLUS_3             0               7

Clustering(19) Variable = TNFRSF10C MUTATION ANALYSIS
D19V1, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 3                  41
  CLUS_2                 1                  56
  CLUS_3                 2                  65
  CLUS_4                 0                  37
D19V2, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 2                  57
  CLUS_2                 3                 105
  CLUS_3                 1                  37
D19V3, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 2                  84
  CLUS_2                 2                  81
  CLUS_3                 1                  35
  CLUS_4                 1                  15
D19V4, multiclass
D19V5, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 2                  42
  CLUS_2                 2                  69
  CLUS_3                 0                  20
  CLUS_4                 1                  21
D19V6, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 2                  18
  CLUS_2                 3                 106
  CLUS_3                 0                  19
  CLUS_4                 0                   9
D19V7, binary
                     cls
clus                    0   1
  TNFRSF10C MUTATED     6   0
  TNFRSF10C WILD-TYPE 193   8
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      6    0
  TNFRSF10C WILD-TYPE  193    8
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 6                 193
  CLUS_3                 0                   8
D19V8, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 6                 184
  CLUS_2                 0                  10
  CLUS_3                 0                   7

Clustering(20) Variable = MAP2K4 MUTATION ANALYSIS
D20V1, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              0               57
  CLUS_3              4               63
  CLUS_4              3               34
D20V2, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              5               54
  CLUS_2              5              103
  CLUS_3              1               37
D20V3, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              8               75
  CLUS_3              0               36
  CLUS_4              0               16
D20V4, multiclass
D20V5, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              4               67
  CLUS_3              0               20
  CLUS_4              2               20
D20V6, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              7              102
  CLUS_3              1               18
  CLUS_4              0                9
D20V7, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED     9   0
  MAP2K4 WILD-TYPE 190   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      9    0
  MAP2K4 WILD-TYPE  190    8
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              9              190
  CLUS_3              0                8
D20V8, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              8              182
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(21) Variable = KIAA1804 MUTATION ANALYSIS
D21V1, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                 41
  CLUS_2                1                 56
  CLUS_3                6                 61
  CLUS_4                4                 33
D21V2, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                5                 54
  CLUS_2                5                103
  CLUS_3                4                 34
D21V3, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                4                 82
  CLUS_2               10                 73
  CLUS_3                0                 36
  CLUS_4                1                 15
D21V4, multiclass
[1] "Remove cluster labels:" "KIAA1804 MUTATED"      
clus
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 1                  6 
        TCGA-A6-2672         TCGA-AG-A01W         TCGA-AG-A01Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A026         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
D21V5, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                 41
  CLUS_2                6                 65
  CLUS_3                1                 19
  CLUS_4                3                 19
D21V6, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2               11                 98
  CLUS_3                2                 17
  CLUS_4                0                  9
D21V7, binary
                    cls
clus                   0   1
  KIAA1804 MUTATED    15   0
  KIAA1804 WILD-TYPE 184   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED     15    0
  KIAA1804 WILD-TYPE  184    8
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1               15                184
  CLUS_3                0                  8
D21V8, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1               14                176
  CLUS_2                1                  9
  CLUS_3                0                  7

Clustering(22) Variable = NRXN1 MUTATION ANALYSIS
D22V1, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             3              54
  CLUS_3             4              63
  CLUS_4             5              32
D22V2, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             6             102
  CLUS_3             3              35
D22V3, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             5              81
  CLUS_2            13              70
  CLUS_3             2              34
  CLUS_4             0              16
D22V4, multiclass
[1] "Remove cluster labels:" "NRXN1 MUTATED"         
clus
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A036 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
D22V5, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             7              64
  CLUS_3             1              19
  CLUS_4             1              21
D22V6, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            11              98
  CLUS_3             1              18
  CLUS_4             0               9
D22V7, binary
                 cls
clus                0   1
  NRXN1 MUTATED    19   0
  NRXN1 WILD-TYPE 180   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     19    0
  NRXN1 WILD-TYPE  180    8
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1            19             180
  CLUS_3             0               8
D22V8, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1            16             174
  CLUS_2             1               9
  CLUS_3             2               5

Clustering(23) Variable = KLHL4 MUTATION ANALYSIS
D23V1, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             6              31
D23V2, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             9              50
  CLUS_2             4             104
  CLUS_3             1              37
D23V3, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             0              86
  CLUS_2            11              72
  CLUS_3             4              32
  CLUS_4             1              15
D23V4, multiclass
D23V5, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             4              67
  CLUS_3             2              18
  CLUS_4             2              20
D23V6, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            10              99
  CLUS_3             1              18
  CLUS_4             0               9
D23V7, binary
                 cls
clus                0   1
  KLHL4 MUTATED    12   1
  KLHL4 WILD-TYPE 187   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED     12    1
  KLHL4 WILD-TYPE  187    7
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             1               7
D23V8, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             3               7
  CLUS_3             1               6

Clustering(24) Variable = SOX9 MUTATION ANALYSIS
D24V1, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             56
  CLUS_3            6             61
  CLUS_4            0             37
D24V2, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            1             58
  CLUS_2            6            102
  CLUS_3            2             36
D24V3, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            0             86
  CLUS_2            9             74
  CLUS_3            1             35
  CLUS_4            0             16
D24V4, multiclass
D24V5, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            0             44
  CLUS_2            3             68
  CLUS_3            0             20
  CLUS_4            2             20
D24V6, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            4            105
  CLUS_3            1             18
  CLUS_4            0              9
D24V7, binary
                cls
clus               0   1
  SOX9 MUTATED    10   0
  SOX9 WILD-TYPE 189   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED     10    0
  SOX9 WILD-TYPE  189    8
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1           10            189
  CLUS_3            0              8
D24V8, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            9            181
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(25) Variable = PRDM9 MUTATION ANALYSIS
D25V1, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             0              57
  CLUS_3             3              64
  CLUS_4             5              32
D25V2, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             7             101
  CLUS_3             2              36
D25V3, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             3              83
  CLUS_2            11              72
  CLUS_3             1              35
  CLUS_4             1              15
D25V4, multiclass
[1] "Remove cluster labels:" "PRDM9 MUTATED"         
clus
  PRDM9 MUTATED PRDM9 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A036 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
D25V5, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             4              67
  CLUS_3             1              19
  CLUS_4             2              20
D25V6, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            10              99
  CLUS_3             1              18
  CLUS_4             0               9
D25V7, binary
                 cls
clus                0   1
  PRDM9 MUTATED    16   0
  PRDM9 WILD-TYPE 183   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED     16    0
  PRDM9 WILD-TYPE  183    8
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1            16             183
  CLUS_3             0               8
D25V8, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1            14             176
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(26) Variable = PCBP1 MUTATION ANALYSIS
D26V1, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             3              34
D26V2, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             4             104
  CLUS_3             2              36
D26V3, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             3              80
  CLUS_3             2              34
  CLUS_4             0              16
D26V4, multiclass
D26V5, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             2              69
  CLUS_3             0              20
  CLUS_4             1              21
D26V6, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2             107
  CLUS_3             1              18
  CLUS_4             0               9
D26V7, binary
                 cls
clus                0   1
  PCBP1 MUTATED     5   0
  PCBP1 WILD-TYPE 194   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      5    0
  PCBP1 WILD-TYPE  194    8
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             5             194
  CLUS_3             0               8
D26V8, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             5             185
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(27) Variable = DMD MUTATION ANALYSIS
D27V1, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1          12            32
  CLUS_2           5            52
  CLUS_3           6            61
  CLUS_4           8            29
D27V2, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1          15            44
  CLUS_2          10            98
  CLUS_3           6            32
D27V3, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1          10            76
  CLUS_2          21            62
  CLUS_3           1            35
  CLUS_4           1            15
D27V4, multiclass
[1] "Remove cluster labels:" "DMD MUTATED"           
clus
  DMD MUTATED DMD WILD-TYPE 
            1             6 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A026    TCGA-AG-A02N 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A036 
"DMD WILD-TYPE" 
D27V5, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1           4            40
  CLUS_2           9            62
  CLUS_3           3            17
  CLUS_4           6            16
D27V6, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1           2            18
  CLUS_2          15            94
  CLUS_3           5            14
  CLUS_4           0             9
D27V7, binary
               cls
clus              0   1
  DMD MUTATED    28   1
  DMD WILD-TYPE 171   7
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     28    1
  DMD WILD-TYPE  171    7
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1          28           171
  CLUS_3           1             7
D27V8, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1          26           164
  CLUS_2           3             7
  CLUS_3           0             7

Clustering(28) Variable = CSMD1 MUTATION ANALYSIS
D28V1, multiclass
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  CLUS_1             7              37
  CLUS_2             4              53
  CLUS_3             5              62
  CLUS_4             7              30
D28V2, multiclass
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  CLUS_1            11              48
  CLUS_2             9              99
  CLUS_3             3              35
D28V3, multiclass
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  CLUS_1             6              80
  CLUS_2            16              67
  CLUS_3             2              34
  CLUS_4             1              15
D28V4, multiclass
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  CLUS_1             1               1
  CLUS_2             2               2
  CLUS_3             0               1
D28V5, multiclass
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  CLUS_1             9              35
  CLUS_2             3              68
  CLUS_3             1              19
  CLUS_4             5              17
D28V6, multiclass
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  CLUS_1             2              18
  CLUS_2            13              96
  CLUS_3             3              16
  CLUS_4             0               9
D28V7, binary
                 cls
clus                0   1
  CSMD1 MUTATED    22   3
  CSMD1 WILD-TYPE 177   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     22    3
  CSMD1 WILD-TYPE  177    5
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  CLUS_1            22             177
  CLUS_3             3               5
D28V8, multiclass
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  CLUS_1            22             168
  CLUS_2             3               7
  CLUS_3             0               7

Clustering(29) Variable = LIFR MUTATION ANALYSIS
D29V1, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            3             41
  CLUS_2            5             52
  CLUS_3            3             64
  CLUS_4            7             30
D29V2, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            7             52
  CLUS_2            8            100
  CLUS_3            3             35
D29V3, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            4             82
  CLUS_2           11             72
  CLUS_3            2             34
  CLUS_4            1             15
D29V4, multiclass
D29V5, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            2             42
  CLUS_2            6             65
  CLUS_3            1             19
  CLUS_4            2             20
D29V6, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            1             19
  CLUS_2            7            102
  CLUS_3            2             17
  CLUS_4            1              8
D29V7, binary
                cls
clus               0   1
  LIFR MUTATED    17   0
  LIFR WILD-TYPE 182   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     17    0
  LIFR WILD-TYPE  182    8
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1           17            182
  CLUS_3            0              8
D29V8, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1           14            176
  CLUS_2            3              7
  CLUS_3            0              7

Clustering(30) Variable = OR6N1 MUTATION ANALYSIS
D30V1, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             1              56
  CLUS_3             0              67
  CLUS_4             1              36
D30V2, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             2             106
  CLUS_3             1              37
D30V3, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             9              74
  CLUS_3             0              36
  CLUS_4             0              16
D30V4, multiclass
D30V5, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             3              68
  CLUS_3             1              19
  CLUS_4             1              21
D30V6, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6             103
  CLUS_3             1              18
  CLUS_4             0               9
D30V7, binary
                 cls
clus                0   1
  OR6N1 MUTATED     8   1
  OR6N1 WILD-TYPE 191   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      8    1
  OR6N1 WILD-TYPE  191    7
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             8             191
  CLUS_3             1               7
D30V8, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(31) Variable = CCDC160 MUTATION ANALYSIS
D31V1, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               0                57
  CLUS_3               1                66
  CLUS_4               3                34
D31V2, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               2                57
  CLUS_2               2               106
  CLUS_3               2                36
D31V3, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               1                85
  CLUS_2               6                77
  CLUS_3               0                36
  CLUS_4               0                16
D31V4, multiclass
D31V5, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               0                44
  CLUS_2               3                68
  CLUS_3               0                20
  CLUS_4               2                20
D31V6, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4               105
  CLUS_3               1                18
  CLUS_4               0                 9
D31V7, binary
                   cls
clus                  0   1
  CCDC160 MUTATED     7   0
  CCDC160 WILD-TYPE 192   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      7    0
  CCDC160 WILD-TYPE  192    8
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               7               192
  CLUS_3               0                 8
D31V8, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               5               185
  CLUS_2               2                 8
  CLUS_3               0                 7

Clustering(32) Variable = CNTN6 MUTATION ANALYSIS
D32V1, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             2              55
  CLUS_3             3              64
  CLUS_4             5              32
D32V2, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             6             102
  CLUS_3             2              36
D32V3, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             3              83
  CLUS_2            10              73
  CLUS_3             1              35
  CLUS_4             2              14
D32V4, multiclass
D32V5, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             4              67
  CLUS_3             1              19
  CLUS_4             3              19
D32V6, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             7             102
  CLUS_3             3              16
  CLUS_4             1               8
D32V7, binary
                 cls
clus                0   1
  CNTN6 MUTATED    14   0
  CNTN6 WILD-TYPE 185   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     14    0
  CNTN6 WILD-TYPE  185    8
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1            14             185
  CLUS_3             0               8
D32V8, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1            12             178
  CLUS_2             1               9
  CLUS_3             1               6

Clustering(33) Variable = CPXCR1 MUTATION ANALYSIS
D33V1, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              0               57
  CLUS_3              0               67
  CLUS_4              4               33
D33V2, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              4               55
  CLUS_2              2              106
  CLUS_3              0               38
D33V3, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              6               77
  CLUS_3              0               36
  CLUS_4              1               15
D33V4, multiclass
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               2                5 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A036 
"CPXCR1 WILD-TYPE" 
D33V5, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              5               66
  CLUS_3              2               18
  CLUS_4              0               22
D33V6, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              7              102
  CLUS_3              0               19
  CLUS_4              0                9
D33V7, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     8   1
  CPXCR1 WILD-TYPE 191   7
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      8    1
  CPXCR1 WILD-TYPE  191    7
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              8              191
  CLUS_3              1                7
D33V8, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              6              184
  CLUS_2              2                8
  CLUS_3              1                6

Clustering(34) Variable = SLITRK1 MUTATION ANALYSIS
D34V1, multiclass
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  CLUS_1               4                40
  CLUS_2               2                55
  CLUS_3               5                62
  CLUS_4               4                33
D34V2, multiclass
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  CLUS_1               5                54
  CLUS_2               8               100
  CLUS_3               2                36
D34V3, multiclass
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  CLUS_1               5                81
  CLUS_2               9                74
  CLUS_3               0                36
  CLUS_4               1                15
D34V4, multiclass
D34V5, multiclass
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  CLUS_1               4                40
  CLUS_2               3                68
  CLUS_3               2                18
  CLUS_4               2                20
D34V6, multiclass
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               8               101
  CLUS_3               2                17
  CLUS_4               0                 9
D34V7, binary
                   cls
clus                  0   1
  SLITRK1 MUTATED    13   0
  SLITRK1 WILD-TYPE 186   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED     13    0
  SLITRK1 WILD-TYPE  186    8
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  CLUS_1              13               186
  CLUS_3               0                 8
D34V8, multiclass
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  CLUS_1              11               179
  CLUS_2               2                 8
  CLUS_3               0                 7

Clustering(35) Variable = CDH2 MUTATION ANALYSIS
D35V1, multiclass
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  CLUS_1            7             37
  CLUS_2            0             57
  CLUS_3            1             66
  CLUS_4            7             30
D35V2, multiclass
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  CLUS_1           10             49
  CLUS_2            4            104
  CLUS_3            1             37
D35V3, multiclass
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  CLUS_1            1             85
  CLUS_2           12             71
  CLUS_3            1             35
  CLUS_4            1             15
D35V4, multiclass
[1] "Remove cluster labels:" "CDH2 MUTATED"          
clus
  CDH2 MUTATED CDH2 WILD-TYPE 
             1              6 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A036 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
D35V5, multiclass
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            3             68
  CLUS_3            1             19
  CLUS_4            3             19
D35V6, multiclass
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            6            103
  CLUS_3            3             16
  CLUS_4            0              9
D35V7, binary
                cls
clus               0   1
  CDH2 MUTATED    12   1
  CDH2 WILD-TYPE 187   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED     12    1
  CDH2 WILD-TYPE  187    7
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  CLUS_1           12            187
  CLUS_3            1              7
D35V8, multiclass
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  CLUS_1           12            178
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(36) Variable = CNBD1 MUTATION ANALYSIS
D36V1, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             2              35
D36V2, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             3             105
  CLUS_3             2              36
D36V3, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             5              78
  CLUS_3             1              35
  CLUS_4             0              16
D36V4, multiclass
D36V5, multiclass
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2             155 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AF-2689      TCGA-AF-3400 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3578      TCGA-AG-3580 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609      TCGA-AG-3612 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D36V6, multiclass
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2             155 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AF-2689      TCGA-AF-3400 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3578      TCGA-AG-3580 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609      TCGA-AG-3612 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D36V7, binary
                 cls
clus                0   1
  CNBD1 MUTATED     6   0
  CNBD1 WILD-TYPE 193   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      6    0
  CNBD1 WILD-TYPE  193    8
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             6             193
  CLUS_3             0               8
D36V8, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             5             185
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(37) Variable = CTNNB1 MUTATION ANALYSIS
D37V1, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              3               54
  CLUS_3              2               65
  CLUS_4              3               34
D37V2, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              4               55
  CLUS_2              5              103
  CLUS_3              1               37
D37V3, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              8               75
  CLUS_3              1               35
  CLUS_4              1               15
D37V4, multiclass
[1] "Remove cluster labels:" "CTNNB1 MUTATED"        
clus
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A026 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
D37V5, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              4               67
  CLUS_3              1               19
  CLUS_4              3               19
D37V6, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              6              103
  CLUS_3              2               17
  CLUS_4              1                8
D37V7, binary
                  cls
clus                 0   1
  CTNNB1 MUTATED     9   0
  CTNNB1 WILD-TYPE 190   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      9    0
  CTNNB1 WILD-TYPE  190    8
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              9              190
  CLUS_3              0                8
D37V8, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              8              182
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(38) Variable = DKK2 MUTATION ANALYSIS
D38V1, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            0             57
  CLUS_3            2             65
  CLUS_4            0             37
D38V2, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            4             55
  CLUS_2            0            108
  CLUS_3            2             36
D38V3, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            4             79
  CLUS_3            0             36
  CLUS_4            0             16
D38V4, multiclass
D38V5, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            1             70
  CLUS_3            0             20
  CLUS_4            2             20
D38V6, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            5            104
  CLUS_3            1             18
  CLUS_4            0              9
D38V7, binary
                cls
clus               0   1
  DKK2 MUTATED     6   0
  DKK2 WILD-TYPE 193   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      6    0
  DKK2 WILD-TYPE  193    8
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            6            193
  CLUS_3            0              8
D38V8, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            6            184
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(39) Variable = ERBB4 MUTATION ANALYSIS
D39V1, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             1              56
  CLUS_3             7              60
  CLUS_4             5              32
D39V2, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             7             101
  CLUS_3             4              34
D39V3, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             3              83
  CLUS_2            14              69
  CLUS_3             1              35
  CLUS_4             0              16
D39V4, multiclass
[1] "Remove cluster labels:" "ERBB4 MUTATED"         
clus
  ERBB4 MUTATED ERBB4 WILD-TYPE 
              2               5 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A036 
"ERBB4 WILD-TYPE" 
D39V5, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             3              68
  CLUS_3             1              19
  CLUS_4             4              18
D39V6, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             8             101
  CLUS_3             4              15
  CLUS_4             0               9
D39V7, binary
                 cls
clus                0   1
  ERBB4 MUTATED    15   1
  ERBB4 WILD-TYPE 184   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     15    1
  ERBB4 WILD-TYPE  184    7
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            15             184
  CLUS_3             1               7
D39V8, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            15             175
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(40) Variable = FLG MUTATION ANALYSIS
D40V1, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          14            30
  CLUS_2           0            57
  CLUS_3           6            61
  CLUS_4           8            29
D40V2, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          15            44
  CLUS_2           6           102
  CLUS_3           7            31
D40V3, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           4            82
  CLUS_2          19            64
  CLUS_3           6            30
  CLUS_4           2            14
D40V4, multiclass
D40V5, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           8            36
  CLUS_2           6            65
  CLUS_3           2            18
  CLUS_4           5            17
D40V6, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           1            19
  CLUS_2          16            93
  CLUS_3           4            15
  CLUS_4           0             9
D40V7, binary
               cls
clus              0   1
  FLG MUTATED    29   1
  FLG WILD-TYPE 170   7
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     29    1
  FLG WILD-TYPE  170    7
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          29           170
  CLUS_3           1             7
D40V8, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          27           163
  CLUS_2           2             8
  CLUS_3           1             6

Clustering(41) Variable = ARID1A MUTATION ANALYSIS
D41V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              9               35
  CLUS_2              3               54
  CLUS_3              3               64
  CLUS_4              5               32
D41V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             10               49
  CLUS_2              8              100
  CLUS_3              2               36
D41V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               82
  CLUS_2             15               68
  CLUS_3              2               34
  CLUS_4              0               16
D41V4, multiclass
D41V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              5               39
  CLUS_2              7               64
  CLUS_3              1               19
  CLUS_4              3               19
D41V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               18
  CLUS_2             11               98
  CLUS_3              3               16
  CLUS_4              0                9
D41V7, binary
                  cls
clus                 0   1
  ARID1A MUTATED    17   0
  ARID1A WILD-TYPE 182   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     17    0
  ARID1A WILD-TYPE  182    8
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             17              182
  CLUS_3              0                8
D41V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             14              176
  CLUS_2              3                7
  CLUS_3              0                7

Clustering(42) Variable = KIAA1486 MUTATION ANALYSIS
D42V1, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                3                 41
  CLUS_2                2                 55
  CLUS_3                2                 65
  CLUS_4                4                 33
D42V2, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                4                 55
  CLUS_2                5                103
  CLUS_3                2                 36
D42V3, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                3                 83
  CLUS_2                8                 75
  CLUS_3                1                 35
  CLUS_4                1                 15
D42V4, multiclass
D42V5, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                4                 67
  CLUS_3                0                 20
  CLUS_4                3                 19
D42V6, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                6                103
  CLUS_3                2                 17
  CLUS_4                0                  9
D42V7, binary
                    cls
clus                   0   1
  KIAA1486 MUTATED    12   0
  KIAA1486 WILD-TYPE 187   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED     12    0
  KIAA1486 WILD-TYPE  187    8
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1               12                187
  CLUS_3                0                  8
D42V8, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                9                181
  CLUS_2                2                  8
  CLUS_3                1                  6

Clustering(43) Variable = ROBO1 MUTATION ANALYSIS
D43V1, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             3              54
  CLUS_3             1              66
  CLUS_4             7              30
D43V2, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1            10              49
  CLUS_2             7             101
  CLUS_3             0              38
D43V3, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             3              83
  CLUS_2            13              70
  CLUS_3             2              34
  CLUS_4             0              16
D43V4, multiclass
D43V5, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             7              37
  CLUS_2             3              68
  CLUS_3             0              20
  CLUS_4             4              18
D43V6, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             9             100
  CLUS_3             4              15
  CLUS_4             0               9
D43V7, binary
                 cls
clus                0   1
  ROBO1 MUTATED    16   1
  ROBO1 WILD-TYPE 183   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED     16    1
  ROBO1 WILD-TYPE  183    7
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1            16             183
  CLUS_3             1               7
D43V8, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1            15             175
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(44) Variable = ZFHX4 MUTATION ANALYSIS
D44V1, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             6              51
  CLUS_3             6              61
  CLUS_4             6              31
D44V2, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             9              50
  CLUS_2            12              96
  CLUS_3             2              36
D44V3, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             8              78
  CLUS_2            15              68
  CLUS_3             0              36
  CLUS_4             1              15
D44V4, multiclass
D44V5, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             6              65
  CLUS_3             0              20
  CLUS_4             3              19
D44V6, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             9             100
  CLUS_3             3              16
  CLUS_4             1               8
D44V7, binary
                 cls
clus                0   1
  ZFHX4 MUTATED    22   0
  ZFHX4 WILD-TYPE 177   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     22    0
  ZFHX4 WILD-TYPE  177    8
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            22             177
  CLUS_3             0               8
D44V8, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            18             172
  CLUS_2             3               7
  CLUS_3             1               6

Clustering(45) Variable = EPHA3 MUTATION ANALYSIS
D45V1, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            10              34
  CLUS_2             2              55
  CLUS_3             1              66
  CLUS_4             3              34
D45V2, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            10              49
  CLUS_2             3             105
  CLUS_3             3              35
D45V3, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             5              81
  CLUS_2            10              73
  CLUS_3             1              35
  CLUS_4             0              16
D45V4, multiclass
D45V5, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             6              65
  CLUS_3             0              20
  CLUS_4             2              20
D45V6, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             9             100
  CLUS_3             1              18
  CLUS_4             0               9
D45V7, binary
                 cls
clus                0   1
  EPHA3 MUTATED    15   0
  EPHA3 WILD-TYPE 184   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED     15    0
  EPHA3 WILD-TYPE  184    8
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            15             184
  CLUS_3             0               8
D45V8, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            13             177
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(46) Variable = PRIM2 MUTATION ANALYSIS
D46V1, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             2              55
  CLUS_3             2              65
  CLUS_4             3              34
D46V2, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             5             103
  CLUS_3             1              37
D46V3, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             3              80
  CLUS_3             2              34
  CLUS_4             0              16
D46V4, multiclass
D46V5, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             3              68
  CLUS_3             1              19
  CLUS_4             2              20
D46V6, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             4             105
  CLUS_3             2              17
  CLUS_4             0               9
D46V7, binary
                 cls
clus                0   1
  PRIM2 MUTATED     6   0
  PRIM2 WILD-TYPE 193   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      6    0
  PRIM2 WILD-TYPE  193    8
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             6             193
  CLUS_3             0               8
D46V8, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             5             185
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(47) Variable = UBE2NL MUTATION ANALYSIS
D47V1, multiclass
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  CLUS_1              3               41
  CLUS_2              2               55
  CLUS_3              0               67
  CLUS_4              2               35
D47V2, multiclass
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  CLUS_1              3               56
  CLUS_2              4              104
  CLUS_3              0               38
D47V3, multiclass
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  CLUS_1              2               84
  CLUS_2              5               78
  CLUS_3              0               36
  CLUS_4              0               16
D47V4, multiclass
D47V5, multiclass
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               69
  CLUS_3              0               20
  CLUS_4              2               20
D47V6, multiclass
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4              105
  CLUS_3              1               18
  CLUS_4              0                9
D47V7, binary
                  cls
clus                 0   1
  UBE2NL MUTATED     5   0
  UBE2NL WILD-TYPE 194   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      5    0
  UBE2NL WILD-TYPE  194    8
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  CLUS_1              5              194
  CLUS_3              0                8
D47V8, multiclass
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  CLUS_1              4              186
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(48) Variable = ACVR2A MUTATION ANALYSIS
D48V1, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              5               39
  CLUS_2              1               56
  CLUS_3              0               67
  CLUS_4              2               35
D48V2, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              4               55
  CLUS_2              3              105
  CLUS_3              1               37
D48V3, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              1               85
  CLUS_2              8               75
  CLUS_3              0               36
  CLUS_4              0               16
D48V4, multiclass
[1] "Remove cluster labels:" "ACVR2A MUTATED"        
clus
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               1                6 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
D48V5, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              1               43
  CLUS_2              4               67
  CLUS_3              0               20
  CLUS_4              2               20
D48V6, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              0               20
  CLUS_2              5              104
  CLUS_3              2               17
  CLUS_4              0                9
D48V7, binary
                  cls
clus                 0   1
  ACVR2A MUTATED     9   0
  ACVR2A WILD-TYPE 190   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      9    0
  ACVR2A WILD-TYPE  190    8
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              9              190
  CLUS_3              0                8
D48V8, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              8              182
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(49) Variable = ADAM29 MUTATION ANALYSIS
D49V1, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              4               53
  CLUS_3              2               65
  CLUS_4              1               36
D49V2, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              3               56
  CLUS_2              6              102
  CLUS_3              2               36
D49V3, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              4               79
  CLUS_3              2               34
  CLUS_4              2               14
D49V4, multiclass
D49V5, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              1               70
  CLUS_3              2               18
  CLUS_4              1               21
D49V6, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              2              107
  CLUS_3              1               18
  CLUS_4              0                9
D49V7, binary
                  cls
clus                 0   1
  ADAM29 MUTATED     9   0
  ADAM29 WILD-TYPE 190   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      9    0
  ADAM29 WILD-TYPE  190    8
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              9              190
  CLUS_3              0                8
D49V8, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              8              182
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(50) Variable = ATP10A MUTATION ANALYSIS
D50V1, multiclass
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  CLUS_1              5               39
  CLUS_2              1               56
  CLUS_3              4               63
  CLUS_4              7               30
D50V2, multiclass
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  CLUS_1              9               50
  CLUS_2              6              102
  CLUS_3              2               36
D50V3, multiclass
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  CLUS_1              4               82
  CLUS_2             12               71
  CLUS_3              2               34
  CLUS_4              1               15
D50V4, multiclass
[1] "Remove cluster labels:" "ATP10A MUTATED"        
clus
  ATP10A MUTATED ATP10A WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
D50V5, multiclass
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  CLUS_1              6               38
  CLUS_2              2               69
  CLUS_3              0               20
  CLUS_4              6               16
D50V6, multiclass
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  CLUS_1              3               17
  CLUS_2              6              103
  CLUS_3              5               14
  CLUS_4              0                9
D50V7, binary
                  cls
clus                 0   1
  ATP10A MUTATED    16   0
  ATP10A WILD-TYPE 183   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED     16    0
  ATP10A WILD-TYPE  183    8
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  CLUS_1             16              183
  CLUS_3              0                8
D50V8, multiclass
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  CLUS_1             14              176
  CLUS_2              1                9
  CLUS_3              1                6

Clustering(51) Variable = DNAH5 MUTATION ANALYSIS
D51V1, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            14              30
  CLUS_2             3              54
  CLUS_3             5              62
  CLUS_4             9              28
D51V2, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            18              41
  CLUS_2             9              99
  CLUS_3             4              34
D51V3, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             4              82
  CLUS_2            24              59
  CLUS_3             4              32
  CLUS_4             2              14
D51V4, multiclass
[1] "Remove cluster labels:" "DNAH5 MUTATED"         
clus
  DNAH5 MUTATED DNAH5 WILD-TYPE 
              2               5 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A036 
"DNAH5 WILD-TYPE" 
D51V5, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             9              62
  CLUS_3             3              17
  CLUS_4             4              18
D51V6, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            15              94
  CLUS_3             4              15
  CLUS_4             2               7
D51V7, binary
                 cls
clus                0   1
  DNAH5 MUTATED    31   1
  DNAH5 WILD-TYPE 168   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     31    1
  DNAH5 WILD-TYPE  168    7
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            31             168
  CLUS_3             1               7
D51V8, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            29             161
  CLUS_2             3               7
  CLUS_3             0               7

Clustering(52) Variable = GABRA5 MUTATION ANALYSIS
D52V1, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              1               56
  CLUS_3              3               64
  CLUS_4              3               34
D52V2, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              3              105
  CLUS_3              3               35
D52V3, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              5               78
  CLUS_3              1               35
  CLUS_4              0               16
D52V4, multiclass
D52V5, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              2               69
  CLUS_3              1               19
  CLUS_4              3               19
D52V6, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4              105
  CLUS_3              2               17
  CLUS_4              0                9
D52V7, binary
                  cls
clus                 0   1
  GABRA5 MUTATED     6   1
  GABRA5 WILD-TYPE 193   7
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      6    1
  GABRA5 WILD-TYPE  193    7
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              6              193
  CLUS_3              1                7
D52V8, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              6              184
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(53) Variable = NALCN MUTATION ANALYSIS
D53V1, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             6              38
  CLUS_2             3              54
  CLUS_3             2              65
  CLUS_4             6              31
D53V2, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             9              50
  CLUS_2             6             102
  CLUS_3             2              36
D53V3, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             4              82
  CLUS_2            12              71
  CLUS_3             2              34
  CLUS_4             1              15
D53V4, multiclass
[1] "Remove cluster labels:" "NALCN MUTATED"         
clus
  NALCN MUTATED NALCN WILD-TYPE 
              2               5 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A02N 
"NALCN WILD-TYPE" 
D53V5, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             4              40
  CLUS_2             8              63
  CLUS_3             0              20
  CLUS_4             2              20
D53V6, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             1              19
  CLUS_2            10              99
  CLUS_3             2              17
  CLUS_4             1               8
D53V7, binary
                 cls
clus                0   1
  NALCN MUTATED    18   0
  NALCN WILD-TYPE 181   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     18    0
  NALCN WILD-TYPE  181    8
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1            18             181
  CLUS_3             0               8
D53V8, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1            14             176
  CLUS_2             2               8
  CLUS_3             2               5

Clustering(54) Variable = OTOL1 MUTATION ANALYSIS
D54V1, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             1              56
  CLUS_3             1              66
  CLUS_4             3              34
D54V2, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             3             105
  CLUS_3             1              37
D54V3, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             4              79
  CLUS_3             1              35
  CLUS_4             0              16
D54V4, multiclass
D54V5, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             5              66
  CLUS_3             0              20
  CLUS_4             1              21
D54V6, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5             104
  CLUS_3             1              18
  CLUS_4             0               9
D54V7, binary
                 cls
clus                0   1
  OTOL1 MUTATED     7   1
  OTOL1 WILD-TYPE 192   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      7    1
  OTOL1 WILD-TYPE  192    7
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             7             192
  CLUS_3             1               7
D54V8, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             7             183
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(55) Variable = PTEN MUTATION ANALYSIS
D55V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             42
  CLUS_2            0             57
  CLUS_3            1             66
  CLUS_4            4             33
D55V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             55
  CLUS_2            3            105
  CLUS_3            0             38
D55V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             86
  CLUS_2            6             77
  CLUS_3            1             35
  CLUS_4            0             16
D55V4, multiclass
D55V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             70
  CLUS_3            0             20
  CLUS_4            1             21
D55V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             19
  CLUS_2            2            107
  CLUS_3            1             18
  CLUS_4            0              9
D55V7, binary
                cls
clus               0   1
  PTEN MUTATED     6   1
  PTEN WILD-TYPE 193   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      6    1
  PTEN WILD-TYPE  193    7
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6            193
  CLUS_3            1              7
D55V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5            185
  CLUS_2            2              8
  CLUS_3            0              7

Clustering(56) Variable = SDK1 MUTATION ANALYSIS
D56V1, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1           12             32
  CLUS_2            3             54
  CLUS_3            6             61
  CLUS_4            4             33
D56V2, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1           14             45
  CLUS_2            5            103
  CLUS_3            6             32
D56V3, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1            7             79
  CLUS_2           15             68
  CLUS_3            4             32
  CLUS_4            1             15
D56V4, multiclass
[1] "Remove cluster labels:" "SDK1 MUTATED"          
clus
  SDK1 MUTATED SDK1 WILD-TYPE 
             1              6 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
D56V5, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1            5             39
  CLUS_2            7             64
  CLUS_3            2             18
  CLUS_4            3             19
D56V6, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1            2             18
  CLUS_2           11             98
  CLUS_3            4             15
  CLUS_4            0              9
D56V7, binary
                cls
clus               0   1
  SDK1 MUTATED    24   0
  SDK1 WILD-TYPE 175   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     24    0
  SDK1 WILD-TYPE  175    8
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1           24            175
  CLUS_3            0              8
D56V8, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1           23            167
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(57) Variable = TLL1 MUTATION ANALYSIS
D57V1, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            5             52
  CLUS_3            1             66
  CLUS_4            6             31
D57V2, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            6             53
  CLUS_2            7            101
  CLUS_3            2             36
D57V3, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            9             74
  CLUS_3            1             35
  CLUS_4            3             13
D57V4, multiclass
D57V5, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            2             69
  CLUS_3            1             19
  CLUS_4            3             19
D57V6, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            2             18
  CLUS_2            5            104
  CLUS_3            3             16
  CLUS_4            0              9
D57V7, binary
                cls
clus               0   1
  TLL1 MUTATED    10   1
  TLL1 WILD-TYPE 189   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED     10    1
  TLL1 WILD-TYPE  189    7
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1           10            189
  CLUS_3            1              7
D57V8, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            7            183
  CLUS_2            2              8
  CLUS_3            2              5

Clustering(58) Variable = TMEM132D MUTATION ANALYSIS
D58V1, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1               11                 33
  CLUS_2                1                 56
  CLUS_3                1                 66
  CLUS_4                3                 34
D58V2, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1               11                 48
  CLUS_2                3                105
  CLUS_3                2                 36
D58V3, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1                3                 83
  CLUS_2               15                 68
  CLUS_3                1                 35
  CLUS_4                0                 16
D58V4, multiclass
[1] "Remove cluster labels:" "TMEM132D MUTATED"      
clus
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                 2                  5 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
D58V5, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1                3                 41
  CLUS_2                3                 68
  CLUS_3                2                 18
  CLUS_4                5                 17
D58V6, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                9                100
  CLUS_3                4                 15
  CLUS_4                0                  9
D58V7, binary
                    cls
clus                   0   1
  TMEM132D MUTATED    17   0
  TMEM132D WILD-TYPE 182   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     17    0
  TMEM132D WILD-TYPE  182    8
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1               17                182
  CLUS_3                0                  8
D58V8, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1               17                173
  CLUS_2                0                 10
  CLUS_3                0                  7

Clustering(59) Variable = TRPC4 MUTATION ANALYSIS
D59V1, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             3              54
  CLUS_3             1              66
  CLUS_4             7              30
D59V2, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1            10              49
  CLUS_2             5             103
  CLUS_3             2              36
D59V3, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             3              83
  CLUS_2            13              70
  CLUS_3             1              35
  CLUS_4             0              16
D59V4, multiclass
D59V5, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             4              67
  CLUS_3             2              18
  CLUS_4             3              19
D59V6, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             8             101
  CLUS_3             2              17
  CLUS_4             2               7
D59V7, binary
                 cls
clus                0   1
  TRPC4 MUTATED    15   1
  TRPC4 WILD-TYPE 184   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED     15    1
  TRPC4 WILD-TYPE  184    7
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1            15             184
  CLUS_3             1               7
D59V8, multiclass
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  CLUS_1            13             177
  CLUS_2             2               8
  CLUS_3             1               6

Clustering(60) Variable = ATM MUTATION ANALYSIS
D60V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           8            36
  CLUS_2           1            56
  CLUS_3           5            62
  CLUS_4           8            29
D60V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          11            48
  CLUS_2           8           100
  CLUS_3           3            35
D60V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            83
  CLUS_2          19            64
  CLUS_3           3            33
  CLUS_4           0            16
D60V4, multiclass
D60V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            42
  CLUS_2          11            60
  CLUS_3           1            19
  CLUS_4           2            20
D60V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           0            20
  CLUS_2          13            96
  CLUS_3           2            17
  CLUS_4           1             8
D60V7, binary
               cls
clus              0   1
  ATM MUTATED    24   0
  ATM WILD-TYPE 175   8
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     24    0
  ATM WILD-TYPE  175    8
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          24           175
  CLUS_3           0             8
D60V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          21           169
  CLUS_2           3             7
  CLUS_3           0             7

Clustering(61) Variable = GPC6 MUTATION ANALYSIS
D61V1, multiclass
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            2             55
  CLUS_3            2             65
  CLUS_4            3             34
D61V2, multiclass
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  CLUS_1            4             55
  CLUS_2            6            102
  CLUS_3            0             38
D61V3, multiclass
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  CLUS_1            5             81
  CLUS_2            5             78
  CLUS_3            0             36
  CLUS_4            0             16
D61V4, multiclass
D61V5, multiclass
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            3             68
  CLUS_3            0             20
  CLUS_4            1             21
D61V6, multiclass
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            6            103
  CLUS_3            1             18
  CLUS_4            0              9
D61V7, binary
                cls
clus               0   1
  GPC6 MUTATED     9   0
  GPC6 WILD-TYPE 190   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      9    0
  GPC6 WILD-TYPE  190    8
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  CLUS_1            9            190
  CLUS_3            0              8
D61V8, multiclass
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  CLUS_1            9            181
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(62) Variable = CDH8 MUTATION ANALYSIS
D62V1, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            5             39
  CLUS_2            2             55
  CLUS_3            0             67
  CLUS_4            6             31
D62V2, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1           10             49
  CLUS_2            3            105
  CLUS_3            0             38
D62V3, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            9             74
  CLUS_3            2             34
  CLUS_4            1             15
D62V4, multiclass
D62V5, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            4             67
  CLUS_3            1             19
  CLUS_4            5             17
D62V6, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            6            103
  CLUS_3            4             15
  CLUS_4            1              8
D62V7, binary
                cls
clus               0   1
  CDH8 MUTATED    11   0
  CDH8 WILD-TYPE 188   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED     11    0
  CDH8 WILD-TYPE  188    8
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1           11            188
  CLUS_3            0              8
D62V8, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1           11            179
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(63) Variable = MGC26647 MUTATION ANALYSIS
D63V1, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                2                 42
  CLUS_2                1                 56
  CLUS_3                1                 66
  CLUS_4                3                 34
D63V2, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                3                 56
  CLUS_2                3                105
  CLUS_3                1                 37
D63V3, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                0                 86
  CLUS_2                5                 78
  CLUS_3                1                 35
  CLUS_4                1                 15
D63V4, multiclass
D63V5, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                2                 42
  CLUS_2                3                 68
  CLUS_3                1                 19
  CLUS_4                1                 21
D63V6, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                4                105
  CLUS_3                1                 18
  CLUS_4                0                  9
D63V7, binary
                    cls
clus                   0   1
  MGC26647 MUTATED     5   0
  MGC26647 WILD-TYPE 194   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      5    0
  MGC26647 WILD-TYPE  194    8
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                5                194
  CLUS_3                0                  8
D63V8, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                4                186
  CLUS_2                1                  9
  CLUS_3                0                  7

Clustering(64) Variable = DKK4 MUTATION ANALYSIS
D64V1, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            0             57
  CLUS_3            2             65
  CLUS_4            2             35
D64V2, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            1            107
  CLUS_3            2             36
D64V3, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            5             78
  CLUS_3            0             36
  CLUS_4            0             16
D64V4, multiclass
[1] "Remove cluster labels:" "DKK4 MUTATED"          
clus
  DKK4 MUTATED DKK4 WILD-TYPE 
             1              6 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A036 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
D64V5, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             70
  CLUS_3            2             18
  CLUS_4            1             21
D64V6, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            5            104
  CLUS_3            1             18
  CLUS_4            0              9
D64V7, binary
                cls
clus               0   1
  DKK4 MUTATED     6   0
  DKK4 WILD-TYPE 193   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      6    0
  DKK4 WILD-TYPE  193    8
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            6            193
  CLUS_3            0              8
D64V8, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            6            184
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(65) Variable = PTPRM MUTATION ANALYSIS
D65V1, multiclass
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  CLUS_1             4              40
  CLUS_2             4              53
  CLUS_3             2              65
  CLUS_4             7              30
D65V2, multiclass
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  CLUS_1            10              49
  CLUS_2             7             101
  CLUS_3             0              38
D65V3, multiclass
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  CLUS_1             3              83
  CLUS_2            15              68
  CLUS_3             1              35
  CLUS_4             0              16
D65V4, multiclass
[1] "Remove cluster labels:" "PTPRM MUTATED"         
clus
  PTPRM MUTATED PTPRM WILD-TYPE 
              2               5 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A026 
"PTPRM WILD-TYPE" 
D65V5, multiclass
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  CLUS_1             6              38
  CLUS_2             5              66
  CLUS_3             1              19
  CLUS_4             2              20
D65V6, multiclass
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  CLUS_1             4              16
  CLUS_2             8             101
  CLUS_3             2              17
  CLUS_4             0               9
D65V7, binary
                 cls
clus                0   1
  PTPRM MUTATED    17   1
  PTPRM WILD-TYPE 182   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED     17    1
  PTPRM WILD-TYPE  182    7
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  CLUS_1            17             182
  CLUS_3             1               7
D65V8, multiclass
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  CLUS_1            14             176
  CLUS_2             3               7
  CLUS_3             1               6

Clustering(66) Variable = AFF2 MUTATION ANALYSIS
D66V1, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            6             38
  CLUS_2            1             56
  CLUS_3            4             63
  CLUS_4            5             32
D66V2, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            7             52
  CLUS_2            4            104
  CLUS_3            5             33
D66V3, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            4             82
  CLUS_2           10             73
  CLUS_3            1             35
  CLUS_4            1             15
D66V4, multiclass
D66V5, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            3             68
  CLUS_3            1             19
  CLUS_4            2             20
D66V6, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            5            104
  CLUS_3            2             17
  CLUS_4            2              7
D66V7, binary
                cls
clus               0   1
  AFF2 MUTATED    15   1
  AFF2 WILD-TYPE 184   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     15    1
  AFF2 WILD-TYPE  184    7
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1           15            184
  CLUS_3            1              7
D66V8, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1           14            176
  CLUS_2            2              8
  CLUS_3            0              7

Clustering(67) Variable = NCAM2 MUTATION ANALYSIS
D67V1, multiclass
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             3              54
  CLUS_3             0              67
  CLUS_4             4              33
D67V2, multiclass
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             5             103
  CLUS_3             1              37
D67V3, multiclass
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             9              74
  CLUS_3             0              36
  CLUS_4             0              16
D67V4, multiclass
D67V5, multiclass
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             3              68
  CLUS_3             0              20
  CLUS_4             3              19
D67V6, multiclass
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4             105
  CLUS_3             3              16
  CLUS_4             0               9
D67V7, binary
                 cls
clus                0   1
  NCAM2 MUTATED    10   0
  NCAM2 WILD-TYPE 189   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCAM2 MUTATED     10    0
  NCAM2 WILD-TYPE  189    8
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  CLUS_1            10             189
  CLUS_3             0               8
D67V8, multiclass
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  CLUS_1             7             183
  CLUS_2             2               8
  CLUS_3             1               6

Clustering(68) Variable = OR2M4 MUTATION ANALYSIS
D68V1, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             0              57
  CLUS_3             1              66
  CLUS_4             1              36
D68V2, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             2             106
  CLUS_3             1              37
D68V3, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             6              77
  CLUS_3             2              34
  CLUS_4             0              16
D68V4, multiclass
D68V5, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             3              68
  CLUS_3             0              20
  CLUS_4             1              21
D68V6, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             5             104
  CLUS_3             0              19
  CLUS_4             0               9
D68V7, binary
                 cls
clus                0   1
  OR2M4 MUTATED     8   0
  OR2M4 WILD-TYPE 191   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      8    0
  OR2M4 WILD-TYPE  191    8
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             8             191
  CLUS_3             0               8
D68V8, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             7             183
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(69) Variable = RYR2 MUTATION ANALYSIS
D69V1, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            9             35
  CLUS_2            5             52
  CLUS_3            3             64
  CLUS_4            6             31
D69V2, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           11             48
  CLUS_2           10             98
  CLUS_3            2             36
D69V3, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            5             81
  CLUS_2           17             66
  CLUS_3            3             33
  CLUS_4            3             13
D69V4, multiclass
[1] "Remove cluster labels:" "RYR2 MUTATED"          
clus
  RYR2 MUTATED RYR2 WILD-TYPE 
             2              5 
    TCGA-A6-2672     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N 
"RYR2 WILD-TYPE" 
D69V5, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            6             38
  CLUS_2            6             65
  CLUS_3            0             20
  CLUS_4            6             16
D69V6, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            1             19
  CLUS_2           12             97
  CLUS_3            5             14
  CLUS_4            0              9
D69V7, binary
                cls
clus               0   1
  RYR2 MUTATED    27   0
  RYR2 WILD-TYPE 172   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     27    0
  RYR2 WILD-TYPE  172    8
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           27            172
  CLUS_3            0              8
D69V8, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           22            168
  CLUS_2            3              7
  CLUS_3            2              5

Clustering(70) Variable = CDH9 MUTATION ANALYSIS
D70V1, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            5             39
  CLUS_2            3             54
  CLUS_3            2             65
  CLUS_4            5             32
D70V2, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            8             51
  CLUS_2            5            103
  CLUS_3            2             36
D70V3, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            3             83
  CLUS_2           11             72
  CLUS_3            0             36
  CLUS_4            1             15
D70V4, multiclass
D70V5, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            2             69
  CLUS_3            1             19
  CLUS_4            4             18
D70V6, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            5            104
  CLUS_3            4             15
  CLUS_4            1              8
D70V7, binary
                cls
clus               0   1
  CDH9 MUTATED    12   0
  CDH9 WILD-TYPE 187   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED     12    0
  CDH9 WILD-TYPE  187    8
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1           12            187
  CLUS_3            0              8
D70V8, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1           10            180
  CLUS_2            2              8
  CLUS_3            0              7

Clustering(71) Variable = GRIK3 MUTATION ANALYSIS
D71V1, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             0              57
  CLUS_3             5              62
  CLUS_4             6              31
D71V2, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             3             105
  CLUS_3             6              32
D71V3, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             9              74
  CLUS_3             3              33
  CLUS_4             2              14
D71V4, multiclass
D71V5, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             4              67
  CLUS_3             1              19
  CLUS_4             4              18
D71V6, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             8             101
  CLUS_3             4              15
  CLUS_4             1               8
D71V7, binary
                 cls
clus                0   1
  GRIK3 MUTATED    14   0
  GRIK3 WILD-TYPE 185   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     14    0
  GRIK3 WILD-TYPE  185    8
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1            14             185
  CLUS_3             0               8
D71V8, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1            13             177
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(72) Variable = ELF3 MUTATION ANALYSIS
D72V1, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            0             57
  CLUS_3            3             64
  CLUS_4            2             35
D72V2, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            1            107
  CLUS_3            2             36
D72V3, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            0             86
  CLUS_2            3             80
  CLUS_3            3             33
  CLUS_4            0             16
D72V4, multiclass
D72V5, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             70
  CLUS_3            0             20
  CLUS_4            1             21
D72V6, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            2            107
  CLUS_3            1             18
  CLUS_4            0              9
D72V7, binary
                cls
clus               0   1
  ELF3 MUTATED     6   0
  ELF3 WILD-TYPE 193   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      6    0
  ELF3 WILD-TYPE  193    8
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            6            193
  CLUS_3            0              8
D72V8, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            5            185
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(73) Variable = TRPS1 MUTATION ANALYSIS
D73V1, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             1              56
  CLUS_3             1              66
  CLUS_4             5              32
D73V2, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             4             104
  CLUS_3             1              37
D73V3, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             1              85
  CLUS_2            13              70
  CLUS_3             1              35
  CLUS_4             2              14
D73V4, multiclass
[1] "Remove cluster labels:" "TRPS1 MUTATED"         
clus
  TRPS1 MUTATED TRPS1 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A036 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
D73V5, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             5              66
  CLUS_3             2              18
  CLUS_4             2              20
D73V6, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            11              98
  CLUS_3             2              17
  CLUS_4             0               9
D73V7, binary
                 cls
clus                0   1
  TRPS1 MUTATED    14   1
  TRPS1 WILD-TYPE 185   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED     14    1
  TRPS1 WILD-TYPE  185    7
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1            14             185
  CLUS_3             1               7
D73V8, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1            13             177
  CLUS_2             1               9
  CLUS_3             1               6

Clustering(74) Variable = FAM133A MUTATION ANALYSIS
D74V1, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               3                41
  CLUS_2               1                56
  CLUS_3               1                66
  CLUS_4               2                35
D74V2, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               3                56
  CLUS_2               3               105
  CLUS_3               1                37
D74V3, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               0                86
  CLUS_2               6                77
  CLUS_3               0                36
  CLUS_4               1                15
D74V4, multiclass
D74V5, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               0                44
  CLUS_2               2                69
  CLUS_3               1                19
  CLUS_4               1                21
D74V6, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               0                20
  CLUS_2               3               106
  CLUS_3               1                18
  CLUS_4               0                 9
D74V7, binary
                   cls
clus                  0   1
  FAM133A MUTATED     7   0
  FAM133A WILD-TYPE 192   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      7    0
  FAM133A WILD-TYPE  192    8
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               7               192
  CLUS_3               0                 8
D74V8, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               6               184
  CLUS_2               1                 9
  CLUS_3               0                 7

Clustering(75) Variable = IL1RAPL2 MUTATION ANALYSIS
D75V1, multiclass
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  CLUS_1                3                 41
  CLUS_2                3                 54
  CLUS_3                1                 66
  CLUS_4                3                 34
D75V2, multiclass
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  CLUS_1                4                 55
  CLUS_2                5                103
  CLUS_3                1                 37
D75V3, multiclass
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  CLUS_1                1                 85
  CLUS_2                8                 75
  CLUS_3                1                 35
  CLUS_4                0                 16
D75V4, multiclass
D75V5, multiclass
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  CLUS_1                2                 42
  CLUS_2                1                 70
  CLUS_3                0                 20
  CLUS_4                3                 19
D75V6, multiclass
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                3                106
  CLUS_3                2                 17
  CLUS_4                0                  9
D75V7, binary
                    cls
clus                   0   1
  IL1RAPL2 MUTATED     7   2
  IL1RAPL2 WILD-TYPE 192   6
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      7    2
  IL1RAPL2 WILD-TYPE  192    6
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  CLUS_1                7                192
  CLUS_3                2                  6
D75V8, multiclass
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  CLUS_1                9                181
  CLUS_2                0                 10
  CLUS_3                0                  7

Clustering(76) Variable = CCBP2 MUTATION ANALYSIS
D76V1, multiclass
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             2              55
  CLUS_3             1              66
  CLUS_4             4              33
D76V2, multiclass
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             6             102
  CLUS_3             0              38
D76V3, multiclass
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             6              77
  CLUS_3             1              35
  CLUS_4             0              16
D76V4, multiclass
D76V5, multiclass
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             3              68
  CLUS_3             0              20
  CLUS_4             2              20
D76V6, multiclass
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6             103
  CLUS_3             2              17
  CLUS_4             0               9
D76V7, binary
                 cls
clus                0   1
  CCBP2 MUTATED     9   0
  CCBP2 WILD-TYPE 190   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      9    0
  CCBP2 WILD-TYPE  190    8
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  CLUS_1             9             190
  CLUS_3             0               8
D76V8, multiclass
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  CLUS_1             7             183
  CLUS_2             1               9
  CLUS_3             1               6

Clustering(77) Variable = OPCML MUTATION ANALYSIS
D77V1, multiclass
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  CLUS_1             2              42
  CLUS_2             4              53
  CLUS_3             1              66
  CLUS_4             3              34
D77V2, multiclass
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  CLUS_1             3              56
  CLUS_2             7             101
  CLUS_3             0              38
D77V3, multiclass
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  CLUS_1             2              84
  CLUS_2             5              78
  CLUS_3             2              34
  CLUS_4             1              15
D77V4, multiclass
D77V5, multiclass
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  CLUS_1             2              42
  CLUS_2             2              69
  CLUS_3             1              19
  CLUS_4             1              21
D77V6, multiclass
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  CLUS_1             0              20
  CLUS_2             3             106
  CLUS_3             3              16
  CLUS_4             0               9
D77V7, binary
                 cls
clus                0   1
  OPCML MUTATED     9   0
  OPCML WILD-TYPE 190   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      9    0
  OPCML WILD-TYPE  190    8
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  CLUS_1             9             190
  CLUS_3             0               8
D77V8, multiclass
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  CLUS_1             7             183
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(78) Variable = CDH18 MUTATION ANALYSIS
D78V1, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             7              37
  CLUS_2             2              55
  CLUS_3             0              67
  CLUS_4             3              34
D78V2, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             5             103
  CLUS_3             1              37
D78V3, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             9              74
  CLUS_3             2              34
  CLUS_4             0              16
D78V4, multiclass
[1] "Remove cluster labels:" "CDH18 MUTATED"         
clus
  CDH18 MUTATED CDH18 WILD-TYPE 
              2               5 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A036 
"CDH18 WILD-TYPE" 
D78V5, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             3              68
  CLUS_3             1              19
  CLUS_4             3              19
D78V6, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             7             102
  CLUS_3             3              16
  CLUS_4             0               9
D78V7, binary
                 cls
clus                0   1
  CDH18 MUTATED    11   0
  CDH18 WILD-TYPE 188   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED     11    0
  CDH18 WILD-TYPE  188    8
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1            11             188
  CLUS_3             0               8
D78V8, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1            10             180
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(79) Variable = OR2L13 MUTATION ANALYSIS
D79V1, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              1               56
  CLUS_3              1               66
  CLUS_4              2               35
D79V2, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              4               55
  CLUS_2              3              105
  CLUS_3              1               37
D79V3, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              8               75
  CLUS_3              0               36
  CLUS_4              1               15
D79V4, multiclass
[1] "Remove cluster labels:" "OR2L13 MUTATED"        
clus
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               2                5 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A036 
"OR2L13 WILD-TYPE" 
D79V5, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              2               69
  CLUS_3              1               19
  CLUS_4              3               19
D79V6, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              7              102
  CLUS_3              1               18
  CLUS_4              0                9
D79V7, binary
                  cls
clus                 0   1
  OR2L13 MUTATED    10   0
  OR2L13 WILD-TYPE 189   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED     10    0
  OR2L13 WILD-TYPE  189    8
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1             10              189
  CLUS_3              0                8
D79V8, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1             10              180
  CLUS_2              0               10
  CLUS_3              0                7

Clustering(80) Variable = LRRN3 MUTATION ANALYSIS
D80V1, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             0              57
  CLUS_3             1              66
  CLUS_4             1              36
D80V2, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             3             105
  CLUS_3             0              38
D80V3, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             6              77
  CLUS_3             2              34
  CLUS_4             0              16
D80V4, multiclass
D80V5, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             3              68
  CLUS_3             1              19
  CLUS_4             3              19
D80V6, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             6             103
  CLUS_3             2              17
  CLUS_4             0               9
D80V7, binary
                 cls
clus                0   1
  LRRN3 MUTATED     7   1
  LRRN3 WILD-TYPE 192   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      7    1
  LRRN3 WILD-TYPE  192    7
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             7             192
  CLUS_3             1               7
D80V8, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             7             183
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(81) Variable = BAI3 MUTATION ANALYSIS
D81V1, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            1             56
  CLUS_3            4             63
  CLUS_4            8             29
D81V2, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            8             51
  CLUS_2            6            102
  CLUS_3            3             35
D81V3, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            6             80
  CLUS_2           10             73
  CLUS_3            2             34
  CLUS_4            0             16
D81V4, multiclass
[1] "Remove cluster labels:" "BAI3 MUTATED"          
clus
  BAI3 MUTATED BAI3 WILD-TYPE 
             1              6 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A036 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
D81V5, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            6             65
  CLUS_3            1             19
  CLUS_4            3             19
D81V6, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            8            101
  CLUS_3            3             16
  CLUS_4            0              9
D81V7, binary
                cls
clus               0   1
  BAI3 MUTATED    16   0
  BAI3 WILD-TYPE 183   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED     16    0
  BAI3 WILD-TYPE  183    8
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1           16            183
  CLUS_3            0              8
D81V8, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1           14            176
  CLUS_2            2              8
  CLUS_3            0              7

Clustering(82) Variable = MGC42105 MUTATION ANALYSIS
D82V1, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                6                 38
  CLUS_2                0                 57
  CLUS_3                1                 66
  CLUS_4                4                 33
D82V2, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                6                 53
  CLUS_2                4                104
  CLUS_3                1                 37
D82V3, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                2                 84
  CLUS_2                8                 75
  CLUS_3                1                 35
  CLUS_4                0                 16
D82V4, multiclass
D82V5, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                3                 68
  CLUS_3                1                 19
  CLUS_4                2                 20
D82V6, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                3                106
  CLUS_3                2                 17
  CLUS_4                2                  7
D82V7, binary
                    cls
clus                   0   1
  MGC42105 MUTATED    11   0
  MGC42105 WILD-TYPE 188   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED     11    0
  MGC42105 WILD-TYPE  188    8
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1               11                188
  CLUS_3                0                  8
D82V8, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1               11                179
  CLUS_2                0                 10
  CLUS_3                0                  7

Clustering(83) Variable = TXNDC3 MUTATION ANALYSIS
D83V1, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              5               39
  CLUS_2              1               56
  CLUS_3              0               67
  CLUS_4              4               33
D83V2, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              6               53
  CLUS_2              2              106
  CLUS_3              2               36
D83V3, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              8               75
  CLUS_3              2               34
  CLUS_4              1               15
D83V4, multiclass
D83V5, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               69
  CLUS_3              2               18
  CLUS_4              0               22
D83V6, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3              106
  CLUS_3              0               19
  CLUS_4              2                7
D83V7, binary
                  cls
clus                 0   1
  TXNDC3 MUTATED    10   0
  TXNDC3 WILD-TYPE 189   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED     10    0
  TXNDC3 WILD-TYPE  189    8
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1             10              189
  CLUS_3              0                8
D83V8, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              6              184
  CLUS_2              3                7
  CLUS_3              1                6

Clustering(84) Variable = LPPR4 MUTATION ANALYSIS
D84V1, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             3              54
  CLUS_3             1              66
  CLUS_4             4              33
D84V2, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             9              50
  CLUS_2             3             105
  CLUS_3             1              37
D84V3, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             3              83
  CLUS_2            10              73
  CLUS_3             0              36
  CLUS_4             0              16
D84V4, multiclass
D84V5, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              70
  CLUS_3             1              19
  CLUS_4             2              20
D84V6, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5             104
  CLUS_3             1              18
  CLUS_4             1               8
D84V7, binary
                 cls
clus                0   1
  LPPR4 MUTATED    12   0
  LPPR4 WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED     12    0
  LPPR4 WILD-TYPE  187    8
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D84V8, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1            11             179
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(85) Variable = UNC13C MUTATION ANALYSIS
D85V1, multiclass
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  CLUS_1              6               38
  CLUS_2              1               56
  CLUS_3              2               65
  CLUS_4              6               31
D85V2, multiclass
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  CLUS_1              8               51
  CLUS_2              5              103
  CLUS_3              2               36
D85V3, multiclass
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  CLUS_1              3               83
  CLUS_2             12               71
  CLUS_3              1               35
  CLUS_4              0               16
D85V4, multiclass
[1] "Remove cluster labels:" "UNC13C MUTATED"        
clus
  UNC13C MUTATED UNC13C WILD-TYPE 
               2                5 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A026 
"UNC13C WILD-TYPE" 
D85V5, multiclass
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  CLUS_1              5               39
  CLUS_2              3               68
  CLUS_3              1               19
  CLUS_4              3               19
D85V6, multiclass
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  CLUS_1              1               19
  CLUS_2              9              100
  CLUS_3              2               17
  CLUS_4              0                9
D85V7, binary
                  cls
clus                 0   1
  UNC13C MUTATED    16   0
  UNC13C WILD-TYPE 183   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED     16    0
  UNC13C WILD-TYPE  183    8
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  CLUS_1             16              183
  CLUS_3              0                8
D85V8, multiclass
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  CLUS_1             14              176
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(86) Variable = SCN7A MUTATION ANALYSIS
D86V1, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             8              36
  CLUS_2             1              56
  CLUS_3             1              66
  CLUS_4             5              32
D86V2, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             9              50
  CLUS_2             4             104
  CLUS_3             2              36
D86V3, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             3              83
  CLUS_2            11              72
  CLUS_3             1              35
  CLUS_4             0              16
D86V4, multiclass
D86V5, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             6              38
  CLUS_2             3              68
  CLUS_3             0              20
  CLUS_4             2              20
D86V6, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             1              19
  CLUS_2             8             101
  CLUS_3             2              17
  CLUS_4             0               9
D86V7, binary
                 cls
clus                0   1
  SCN7A MUTATED    14   0
  SCN7A WILD-TYPE 185   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED     14    0
  SCN7A WILD-TYPE  185    8
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1            14             185
  CLUS_3             0               8
D86V8, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1            12             178
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(87) Variable = ACOT4 MUTATION ANALYSIS
D87V1, multiclass
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              57
  CLUS_3             1              66
  CLUS_4             0              37
D87V2, multiclass
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             1             107
  CLUS_3             0              38
D87V3, multiclass
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             2              81
  CLUS_3             0              36
  CLUS_4             0              16
D87V4, multiclass
D87V5, multiclass
[1] "Remove cluster labels:" "ACOT4 MUTATED"         
clus
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              1             156 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3856      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3872 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A022      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AF-2689 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3578 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3882      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
D87V6, multiclass
[1] "Remove cluster labels:" "ACOT4 MUTATED"         
clus
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              1             156 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3856      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3872 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A022      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AF-2689 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3578 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3882      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
D87V7, binary
                 cls
clus                0   1
  ACOT4 MUTATED     3   0
  ACOT4 WILD-TYPE 196   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      3    0
  ACOT4 WILD-TYPE  196    8
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             3             196
  CLUS_3             0               8
D87V8, multiclass
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             3             187
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(88) Variable = GGT1 MUTATION ANALYSIS
D88V1, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            203 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3864 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3887     TCGA-AG-3890 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AY-4070     TCGA-AY-4071 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D88V2, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            203 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3864 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3887     TCGA-AG-3890 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AY-4070     TCGA-AY-4071 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D88V3, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            0             86
  CLUS_2            3             80
  CLUS_3            0             36
  CLUS_4            0             16
D88V4, multiclass
D88V5, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            155 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3848 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01X     TCGA-AA-A022 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AF-2689     TCGA-AF-3400 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3578     TCGA-AG-3580 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609     TCGA-AG-3612 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D88V6, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            155 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3848 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01X     TCGA-AA-A022 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AF-2689     TCGA-AF-3400 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3578     TCGA-AG-3580 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609     TCGA-AG-3612 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D88V7, binary
                cls
clus               0   1
  GGT1 MUTATED     3   0
  GGT1 WILD-TYPE 196   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      3    0
  GGT1 WILD-TYPE  196    8
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            3            196
  CLUS_3            0              8
D88V8, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            3            187
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(89) Variable = GRIA1 MUTATION ANALYSIS
D89V1, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             3              54
  CLUS_3             1              66
  CLUS_4             3              34
D89V2, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             6             102
  CLUS_3             1              37
D89V3, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             2              84
  CLUS_2            12              71
  CLUS_3             1              35
  CLUS_4             0              16
D89V4, multiclass
[1] "Remove cluster labels:" "GRIA1 MUTATED"         
clus
  GRIA1 MUTATED GRIA1 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A036 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
D89V5, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             7              64
  CLUS_3             1              19
  CLUS_4             2              20
D89V6, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             7             102
  CLUS_3             2              17
  CLUS_4             1               8
D89V7, binary
                 cls
clus                0   1
  GRIA1 MUTATED    12   0
  GRIA1 WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     12    0
  GRIA1 WILD-TYPE  187    8
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D89V8, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             3               7
  CLUS_3             0               7

Clustering(90) Variable = ING1 MUTATION ANALYSIS
D90V1, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            2             55
  CLUS_3            0             67
  CLUS_4            1             36
D90V2, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            3            105
  CLUS_3            0             38
D90V3, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            4             79
  CLUS_3            0             36
  CLUS_4            0             16
D90V4, multiclass
[1] "Remove cluster labels:" "ING1 MUTATED"          
clus
  ING1 MUTATED ING1 WILD-TYPE 
             1              6 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" 
D90V5, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            3             68
  CLUS_3            0             20
  CLUS_4            1             21
D90V6, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            4            105
  CLUS_3            1             18
  CLUS_4            0              9
D90V7, binary
                cls
clus               0   1
  ING1 MUTATED     6   0
  ING1 WILD-TYPE 193   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  ING1 MUTATED      6    0
  ING1 WILD-TYPE  193    8
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            6            193
  CLUS_3            0              8
D90V8, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            5            185
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(91) Variable = PCDHA10 MUTATION ANALYSIS
D91V1, multiclass
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               1                56
  CLUS_3               2                65
  CLUS_4               5                32
D91V2, multiclass
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  CLUS_1               4                55
  CLUS_2               3               105
  CLUS_3               3                35
D91V3, multiclass
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  CLUS_1               1                85
  CLUS_2               7                76
  CLUS_3               2                34
  CLUS_4               0                16
D91V4, multiclass
D91V5, multiclass
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  CLUS_1               1                43
  CLUS_2               2                69
  CLUS_3               0                20
  CLUS_4               3                19
D91V6, multiclass
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               2               107
  CLUS_3               3                16
  CLUS_4               0                 9
D91V7, binary
                   cls
clus                  0   1
  PCDHA10 MUTATED     9   0
  PCDHA10 WILD-TYPE 190   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA10 MUTATED      9    0
  PCDHA10 WILD-TYPE  190    8
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  CLUS_1               9               190
  CLUS_3               0                 8
D91V8, multiclass
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  CLUS_1               8               182
  CLUS_2               1                 9
  CLUS_3               0                 7

Clustering(92) Variable = ZNF208 MUTATION ANALYSIS
D92V1, multiclass
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              3               54
  CLUS_3              1               66
  CLUS_4              4               33
D92V2, multiclass
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  CLUS_1              4               55
  CLUS_2              5              103
  CLUS_3              2               36
D92V3, multiclass
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  CLUS_1              4               82
  CLUS_2              7               76
  CLUS_3              0               36
  CLUS_4              0               16
D92V4, multiclass
D92V5, multiclass
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              3               68
  CLUS_3              0               20
  CLUS_4              2               20
D92V6, multiclass
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3              106
  CLUS_3              2               17
  CLUS_4              0                9
D92V7, binary
                  cls
clus                 0   1
  ZNF208 MUTATED    10   0
  ZNF208 WILD-TYPE 189   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED     10    0
  ZNF208 WILD-TYPE  189    8
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  CLUS_1             10              189
  CLUS_3              0                8
D92V8, multiclass
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  CLUS_1              8              182
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(93) Variable = CRTC1 MUTATION ANALYSIS
D93V1, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              57
  CLUS_3             4              63
  CLUS_4             0              37
D93V2, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             1             107
  CLUS_3             3              35
D93V3, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             3              80
  CLUS_3             0              36
  CLUS_4             0              16
D93V4, multiclass
D93V5, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              71
  CLUS_3             0              20
  CLUS_4             1              21
D93V6, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2             107
  CLUS_3             1              18
  CLUS_4             0               9
D93V7, binary
                 cls
clus                0   1
  CRTC1 MUTATED     6   0
  CRTC1 WILD-TYPE 193   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CRTC1 MUTATED      6    0
  CRTC1 WILD-TYPE  193    8
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             6             193
  CLUS_3             0               8
D93V8, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             5             185
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(94) Variable = FAM5C MUTATION ANALYSIS
D94V1, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              56
  CLUS_3             4              63
  CLUS_4             3              34
D94V2, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             4              55
  CLUS_2             6             102
  CLUS_3             1              37
D94V3, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             2              84
  CLUS_2            10              73
  CLUS_3             0              36
  CLUS_4             1              15
D94V4, multiclass
[1] "Remove cluster labels:" "FAM5C MUTATED"         
clus
  FAM5C MUTATED FAM5C WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
D94V5, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             2              42
  CLUS_2             1              70
  CLUS_3             2              18
  CLUS_4             4              18
D94V6, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3             106
  CLUS_3             4              15
  CLUS_4             1               8
D94V7, binary
                 cls
clus                0   1
  FAM5C MUTATED    10   2
  FAM5C WILD-TYPE 189   6
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED     10    2
  FAM5C WILD-TYPE  189    6
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1            10             189
  CLUS_3             2               6
D94V8, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1            11             179
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(95) Variable = GUCY1A3 MUTATION ANALYSIS
D95V1, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               4                40
  CLUS_2               2                55
  CLUS_3               2                65
  CLUS_4               3                34
D95V2, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               6                53
  CLUS_2               4               104
  CLUS_3               1                37
D95V3, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               2                84
  CLUS_2               8                75
  CLUS_3               0                36
  CLUS_4               2                14
D95V4, multiclass
D95V5, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               1                43
  CLUS_2               3                68
  CLUS_3               1                19
  CLUS_4               2                20
D95V6, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               5               104
  CLUS_3               2                17
  CLUS_4               0                 9
D95V7, binary
                   cls
clus                  0   1
  GUCY1A3 MUTATED    10   0
  GUCY1A3 WILD-TYPE 189   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED     10    0
  GUCY1A3 WILD-TYPE  189    8
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1              10               189
  CLUS_3               0                 8
D95V8, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               9               181
  CLUS_2               1                 9
  CLUS_3               0                 7

Clustering(96) Variable = FAM22F MUTATION ANALYSIS
D96V1, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1               56
  CLUS_3              4               63
  CLUS_4              2               35
D96V2, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              3               56
  CLUS_2              4              104
  CLUS_3              2               36
D96V3, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              4               82
  CLUS_2              4               79
  CLUS_3              1               35
  CLUS_4              0               16
D96V4, multiclass
D96V5, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              3               41
  CLUS_2              2               69
  CLUS_3              0               20
  CLUS_4              2               20
D96V6, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              1               19
  CLUS_2              4              105
  CLUS_3              2               17
  CLUS_4              0                9
D96V7, binary
                  cls
clus                 0   1
  FAM22F MUTATED     8   0
  FAM22F WILD-TYPE 191   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      8    0
  FAM22F WILD-TYPE  191    8
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              8              191
  CLUS_3              0                8
D96V8, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              8              182
  CLUS_2              0               10
  CLUS_3              0                7

Clustering(97) Variable = CHRDL1 MUTATION ANALYSIS
D97V1, multiclass
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              2               55
  CLUS_3              1               66
  CLUS_4              4               33
D97V2, multiclass
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  CLUS_1              4               55
  CLUS_2              4              104
  CLUS_3              1               37
D97V3, multiclass
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              7               76
  CLUS_3              1               35
  CLUS_4              0               16
D97V4, multiclass
[1] "Remove cluster labels:" "CHRDL1 MUTATED"        
clus
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A036 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
D97V5, multiclass
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              3               68
  CLUS_3              1               19
  CLUS_4              3               19
D97V6, multiclass
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              6              103
  CLUS_3              2               17
  CLUS_4              0                9
D97V7, binary
                  cls
clus                 0   1
  CHRDL1 MUTATED    10   0
  CHRDL1 WILD-TYPE 189   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED     10    0
  CHRDL1 WILD-TYPE  189    8
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  CLUS_1             10              189
  CLUS_3              0                8
D97V8, multiclass
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  CLUS_1              9              181
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(98) Variable = EDNRB MUTATION ANALYSIS
D98V1, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             2              42
  CLUS_2             2              55
  CLUS_3             1              66
  CLUS_4             5              32
D98V2, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             3              56
  CLUS_2             6             102
  CLUS_3             1              37
D98V3, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             3              83
  CLUS_2             5              78
  CLUS_3             2              34
  CLUS_4             0              16
D98V4, multiclass
D98V5, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             5              39
  CLUS_2             1              70
  CLUS_3             0              20
  CLUS_4             3              19
D98V6, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             0              20
  CLUS_2             7             102
  CLUS_3             2              17
  CLUS_4             0               9
D98V7, binary
                 cls
clus                0   1
  EDNRB MUTATED     9   0
  EDNRB WILD-TYPE 190   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      9    0
  EDNRB WILD-TYPE  190    8
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             9             190
  CLUS_3             0               8
D98V8, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             8             182
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(99) Variable = IFT80 MUTATION ANALYSIS
D99V1, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             1              56
  CLUS_3             0              67
  CLUS_4             3              34
D99V2, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             2             106
  CLUS_3             0              38
D99V3, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             7              76
  CLUS_3             1              35
  CLUS_4             0              16
D99V4, multiclass
D99V5, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             2              69
  CLUS_3             1              19
  CLUS_4             2              20
D99V6, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4             105
  CLUS_3             2              17
  CLUS_4             0               9
D99V7, binary
                 cls
clus                0   1
  IFT80 MUTATED     8   1
  IFT80 WILD-TYPE 191   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      8    1
  IFT80 WILD-TYPE  191    7
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             8             191
  CLUS_3             1               7
D99V8, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             7             183
  CLUS_2             1               9
  CLUS_3             1               6

Clustering(100) Variable = ANK2 MUTATION ANALYSIS
D100V1, multiclass
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  CLUS_1            9             35
  CLUS_2            3             54
  CLUS_3            3             64
  CLUS_4           10             27
D100V2, multiclass
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  CLUS_1           16             43
  CLUS_2            9             99
  CLUS_3            0             38
D100V3, multiclass
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  CLUS_1            6             80
  CLUS_2           21             62
  CLUS_3            3             33
  CLUS_4            0             16
D100V4, multiclass
[1] "Remove cluster labels:" "ANK2 MUTATED"          
clus
  ANK2 MUTATED ANK2 WILD-TYPE 
             2              5 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A036 
"ANK2 WILD-TYPE" 
D100V5, multiclass
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            8             63
  CLUS_3            4             16
  CLUS_4            8             14
D100V6, multiclass
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  CLUS_1            0             20
  CLUS_2           15             94
  CLUS_3            5             14
  CLUS_4            2              7
D100V7, binary
                cls
clus               0   1
  ANK2 MUTATED    25   1
  ANK2 WILD-TYPE 174   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     25    1
  ANK2 WILD-TYPE  174    7
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  CLUS_1           25            174
  CLUS_3            1              7
D100V8, multiclass
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  CLUS_1           22            168
  CLUS_2            4              6
  CLUS_3            0              7

Clustering(101) Variable = CASP14 MUTATION ANALYSIS
D101V1, multiclass
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               55
  CLUS_3              3               64
  CLUS_4              1               36
D101V2, multiclass
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              6              102
  CLUS_3              0               38
D101V3, multiclass
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              3               80
  CLUS_3              2               34
  CLUS_4              0               16
D101V4, multiclass
D101V5, multiclass
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              3               68
  CLUS_3              1               19
  CLUS_4              1               21
D101V6, multiclass
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              5              104
  CLUS_3              1               18
  CLUS_4              0                9
D101V7, binary
                  cls
clus                 0   1
  CASP14 MUTATED     7   1
  CASP14 WILD-TYPE 192   7
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      7    1
  CASP14 WILD-TYPE  192    7
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  CLUS_1              7              192
  CLUS_3              1                7
D101V8, multiclass
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  CLUS_1              8              182
  CLUS_2              0               10
  CLUS_3              0                7

Clustering(102) Variable = LASS3 MUTATION ANALYSIS
D102V1, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              56
  CLUS_3             0              67
  CLUS_4             5              32
D102V2, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             4             104
  CLUS_3             0              38
D102V3, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             7              76
  CLUS_3             1              35
  CLUS_4             0              16
D102V4, multiclass
[1] "Remove cluster labels:" "LASS3 MUTATED"         
clus
  LASS3 MUTATED LASS3 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
D102V5, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             3              68
  CLUS_3             0              20
  CLUS_4             3              19
D102V6, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6             103
  CLUS_3             1              18
  CLUS_4             0               9
D102V7, binary
                 cls
clus                0   1
  LASS3 MUTATED     8   0
  LASS3 WILD-TYPE 191   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LASS3 MUTATED      8    0
  LASS3 WILD-TYPE  191    8
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             8             191
  CLUS_3             0               8
D102V8, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             6             184
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(103) Variable = P2RY10 MUTATION ANALYSIS
D103V1, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              2               55
  CLUS_3              1               66
  CLUS_4              2               35
D103V2, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              3               56
  CLUS_2              2              106
  CLUS_3              2               36
D103V3, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              5               78
  CLUS_3              0               36
  CLUS_4              0               16
D103V4, multiclass
[1] "Remove cluster labels:" "P2RY10 MUTATED"        
clus
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
D103V5, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              3               68
  CLUS_3              0               20
  CLUS_4              2               20
D103V6, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4              105
  CLUS_3              1               18
  CLUS_4              0                9
D103V7, binary
                  cls
clus                 0   1
  P2RY10 MUTATED     6   0
  P2RY10 WILD-TYPE 193   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      6    0
  P2RY10 WILD-TYPE  193    8
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              6              193
  CLUS_3              0                8
D103V8, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              6              184
  CLUS_2              0               10
  CLUS_3              0                7

Clustering(104) Variable = CNTN1 MUTATION ANALYSIS
D104V1, multiclass
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             5              32
D104V2, multiclass
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  CLUS_1             8              51
  CLUS_2             5             103
  CLUS_3             1              37
D104V3, multiclass
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  CLUS_1             2              84
  CLUS_2            12              71
  CLUS_3             0              36
  CLUS_4             0              16
D104V4, multiclass
[1] "Remove cluster labels:" "CNTN1 MUTATED"         
clus
  CNTN1 MUTATED CNTN1 WILD-TYPE 
              1               6 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
D104V5, multiclass
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             4              67
  CLUS_3             0              20
  CLUS_4             3              19
D104V6, multiclass
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             7             102
  CLUS_3             2              17
  CLUS_4             0               9
D104V7, binary
                 cls
clus                0   1
  CNTN1 MUTATED    13   0
  CNTN1 WILD-TYPE 186   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN1 MUTATED     13    0
  CNTN1 WILD-TYPE  186    8
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  CLUS_1            13             186
  CLUS_3             0               8
D104V8, multiclass
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  CLUS_1            11             179
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(105) Variable = ISL1 MUTATION ANALYSIS
D105V1, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            1             56
  CLUS_3            2             65
  CLUS_4            1             36
D105V2, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            4             55
  CLUS_2            3            105
  CLUS_3            1             37
D105V3, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            3             83
  CLUS_2            5             78
  CLUS_3            0             36
  CLUS_4            0             16
D105V4, multiclass
D105V5, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            3             68
  CLUS_3            0             20
  CLUS_4            1             21
D105V6, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            6            103
  CLUS_3            0             19
  CLUS_4            0              9
D105V7, binary
                cls
clus               0   1
  ISL1 MUTATED     8   0
  ISL1 WILD-TYPE 191   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      8    0
  ISL1 WILD-TYPE  191    8
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            8            191
  CLUS_3            0              8
D105V8, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            7            183
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(106) Variable = ARID2 MUTATION ANALYSIS
D106V1, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             2              55
  CLUS_3             2              65
  CLUS_4             4              33
D106V2, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             5             103
  CLUS_3             1              37
D106V3, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3              83
  CLUS_2            10              73
  CLUS_3             0              36
  CLUS_4             2              14
D106V4, multiclass
D106V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             3              68
  CLUS_3             1              19
  CLUS_4             4              18
D106V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             9             100
  CLUS_3             3              16
  CLUS_4             0               9
D106V7, binary
                 cls
clus                0   1
  ARID2 MUTATED    12   0
  ARID2 WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED     12    0
  ARID2 WILD-TYPE  187    8
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D106V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             2               8
  CLUS_3             1               6

Clustering(107) Variable = EIF4A2 MUTATION ANALYSIS
D107V1, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              2               55
  CLUS_3              2               65
  CLUS_4              0               37
D107V2, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              0               59
  CLUS_2              3              105
  CLUS_3              1               37
D107V3, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              1               82
  CLUS_3              1               35
  CLUS_4              0               16
D107V4, multiclass
[1] "Remove cluster labels:" "EIF4A2 MUTATED"        
clus
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A020       TCGA-AG-A026 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
D107V5, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              3               68
  CLUS_3              0               20
  CLUS_4              1               21
D107V6, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3              106
  CLUS_3              1               18
  CLUS_4              0                9
D107V7, binary
                  cls
clus                 0   1
  EIF4A2 MUTATED     4   0
  EIF4A2 WILD-TYPE 195   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4A2 MUTATED      4    0
  EIF4A2 WILD-TYPE  195    8
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              4              195
  CLUS_3              0                8
D107V8, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              3              187
  CLUS_2              0               10
  CLUS_3              1                6

Clustering(108) Variable = OR51V1 MUTATION ANALYSIS
D108V1, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              0               57
  CLUS_3              0               67
  CLUS_4              3               34
D108V2, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              6               53
  CLUS_2              1              107
  CLUS_3              0               38
D108V3, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              9               74
  CLUS_3              0               36
  CLUS_4              0               16
D108V4, multiclass
D108V5, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              5               66
  CLUS_3              0               20
  CLUS_4              0               22
D108V6, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              9              100
  CLUS_3              0               19
  CLUS_4              0                9
D108V7, binary
                  cls
clus                 0   1
  OR51V1 MUTATED     9   0
  OR51V1 WILD-TYPE 190   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      9    0
  OR51V1 WILD-TYPE  190    8
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              9              190
  CLUS_3              0                8
D108V8, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              8              182
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(109) Variable = ZC3H13 MUTATION ANALYSIS
D109V1, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              5               39
  CLUS_2              2               55
  CLUS_3              2               65
  CLUS_4             10               27
D109V2, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             14               45
  CLUS_2              4              104
  CLUS_3              1               37
D109V3, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              2               84
  CLUS_2             18               65
  CLUS_3              1               35
  CLUS_4              0               16
D109V4, multiclass
[1] "Remove cluster labels:" "ZC3H13 MUTATED"        
clus
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A036 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
D109V5, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              4               67
  CLUS_3              2               18
  CLUS_4              5               17
D109V6, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              7              102
  CLUS_3              5               14
  CLUS_4              1                8
D109V7, binary
                  cls
clus                 0   1
  ZC3H13 MUTATED    18   0
  ZC3H13 WILD-TYPE 181   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     18    0
  ZC3H13 WILD-TYPE  181    8
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             18              181
  CLUS_3              0                8
D109V8, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             16              174
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(110) Variable = CDH11 MUTATION ANALYSIS
D110V1, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             4              33
D110V2, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             4             104
  CLUS_3             2              36
D110V3, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             3              83
  CLUS_2            11              72
  CLUS_3             0              36
  CLUS_4             0              16
D110V4, multiclass
D110V5, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             4              67
  CLUS_3             1              19
  CLUS_4             3              19
D110V6, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6             103
  CLUS_3             3              16
  CLUS_4             0               9
D110V7, binary
                 cls
clus                0   1
  CDH11 MUTATED    11   1
  CDH11 WILD-TYPE 188   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED     11    1
  CDH11 WILD-TYPE  188    7
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1            11             188
  CLUS_3             1               7
D110V8, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1            12             178
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(111) Variable = CHST9 MUTATION ANALYSIS
D111V1, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              56
  CLUS_3             0              67
  CLUS_4             4              33
D111V2, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             3             105
  CLUS_3             1              37
D111V3, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             7              76
  CLUS_3             0              36
  CLUS_4             0              16
D111V4, multiclass
D111V5, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             1              70
  CLUS_3             0              20
  CLUS_4             2              20
D111V6, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             1             108
  CLUS_3             3              16
  CLUS_4             0               9
D111V7, binary
                 cls
clus                0   1
  CHST9 MUTATED     7   0
  CHST9 WILD-TYPE 192   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST9 MUTATED      7    0
  CHST9 WILD-TYPE  192    8
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             7             192
  CLUS_3             0               8
D111V8, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             6             184
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(112) Variable = HTR3B MUTATION ANALYSIS
D112V1, multiclass
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  CLUS_1             1              43
  CLUS_2             0              57
  CLUS_3             2              65
  CLUS_4             3              34
D112V2, multiclass
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  CLUS_1             2              57
  CLUS_2             4             104
  CLUS_3             0              38
D112V3, multiclass
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  CLUS_1             2              84
  CLUS_2             4              79
  CLUS_3             0              36
  CLUS_4             0              16
D112V4, multiclass
D112V5, multiclass
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  CLUS_1             0              44
  CLUS_2             1              70
  CLUS_3             1              19
  CLUS_4             3              19
D112V6, multiclass
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  CLUS_1             1              19
  CLUS_2             2             107
  CLUS_3             2              17
  CLUS_4             0               9
D112V7, binary
                 cls
clus                0   1
  HTR3B MUTATED     5   0
  HTR3B WILD-TYPE 194   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR3B MUTATED      5    0
  HTR3B WILD-TYPE  194    8
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  CLUS_1             5             194
  CLUS_3             0               8
D112V8, multiclass
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  CLUS_1             4             186
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(113) Variable = LRRIQ3 MUTATION ANALYSIS
D113V1, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              2               55
  CLUS_3              1               66
  CLUS_4              3               34
D113V2, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              5               54
  CLUS_2              3              105
  CLUS_3              2               36
D113V3, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              6               77
  CLUS_3              2               34
  CLUS_4              1               15
D113V4, multiclass
D113V5, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               69
  CLUS_3              1               19
  CLUS_4              2               20
D113V6, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4              105
  CLUS_3              1               18
  CLUS_4              1                8
D113V7, binary
                  cls
clus                 0   1
  LRRIQ3 MUTATED    10   0
  LRRIQ3 WILD-TYPE 189   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED     10    0
  LRRIQ3 WILD-TYPE  189    8
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1             10              189
  CLUS_3              0                8
D113V8, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              8              182
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(114) Variable = HCN1 MUTATION ANALYSIS
D114V1, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             56
  CLUS_3            1             66
  CLUS_4            3             34
D114V2, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            2            106
  CLUS_3            2             36
D114V3, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            7             76
  CLUS_3            0             36
  CLUS_4            2             14
D114V4, multiclass
[1] "Remove cluster labels:" "HCN1 MUTATED"          
clus
  HCN1 MUTATED HCN1 WILD-TYPE 
             1              6 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A036 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
D114V5, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            3             68
  CLUS_3            2             18
  CLUS_4            1             21
D114V6, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            6            103
  CLUS_3            1             18
  CLUS_4            0              9
D114V7, binary
                cls
clus               0   1
  HCN1 MUTATED     9   0
  HCN1 WILD-TYPE 190   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  HCN1 MUTATED      9    0
  HCN1 WILD-TYPE  190    8
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            9            190
  CLUS_3            0              8
D114V8, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            9            181
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(115) Variable = CHRM2 MUTATION ANALYSIS
D115V1, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             0              57
  CLUS_3             2              65
  CLUS_4             3              34
D115V2, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             3             105
  CLUS_3             1              37
D115V3, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             7              76
  CLUS_3             0              36
  CLUS_4             1              15
D115V4, multiclass
D115V5, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             5              66
  CLUS_3             0              20
  CLUS_4             2              20
D115V6, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             7             102
  CLUS_3             2              17
  CLUS_4             0               9
D115V7, binary
                 cls
clus                0   1
  CHRM2 MUTATED     9   0
  CHRM2 WILD-TYPE 190   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      9    0
  CHRM2 WILD-TYPE  190    8
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             9             190
  CLUS_3             0               8
D115V8, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             8             182
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(116) Variable = CSMD3 MUTATION ANALYSIS
D116V1, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             8              36
  CLUS_2             4              53
  CLUS_3             3              64
  CLUS_4             9              28
D116V2, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            14              45
  CLUS_2             8             100
  CLUS_3             2              36
D116V3, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             5              81
  CLUS_2            19              64
  CLUS_3             2              34
  CLUS_4             2              14
D116V4, multiclass
[1] "Remove cluster labels:" "CSMD3 MUTATED"         
clus
  CSMD3 MUTATED CSMD3 WILD-TYPE 
              2               5 
     TCGA-A6-2672      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A036 
"CSMD3 WILD-TYPE" 
D116V5, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             7              64
  CLUS_3             3              17
  CLUS_4             6              16
D116V6, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            11              98
  CLUS_3             6              13
  CLUS_4             1               8
D116V7, binary
                 cls
clus                0   1
  CSMD3 MUTATED    25   0
  CSMD3 WILD-TYPE 174   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     25    0
  CSMD3 WILD-TYPE  174    8
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            25             174
  CLUS_3             0               8
D116V8, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            20             170
  CLUS_2             3               7
  CLUS_3             2               5

Clustering(117) Variable = DCAF4L2 MUTATION ANALYSIS
D117V1, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               3                41
  CLUS_2               1                56
  CLUS_3               0                67
  CLUS_4               5                32
D117V2, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               7                52
  CLUS_2               2               106
  CLUS_3               0                38
D117V3, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               1                85
  CLUS_2               9                74
  CLUS_3               1                35
  CLUS_4               0                16
D117V4, multiclass
D117V5, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               1                43
  CLUS_2               2                69
  CLUS_3               1                19
  CLUS_4               2                20
D117V6, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               3               106
  CLUS_3               2                17
  CLUS_4               0                 9
D117V7, binary
                   cls
clus                  0   1
  DCAF4L2 MUTATED     8   1
  DCAF4L2 WILD-TYPE 191   7
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      8    1
  DCAF4L2 WILD-TYPE  191    7
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               8               191
  CLUS_3               1                 7
D117V8, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               8               182
  CLUS_2               1                 9
  CLUS_3               0                 7

Clustering(118) Variable = DACH2 MUTATION ANALYSIS
D118V1, multiclass
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             3              54
  CLUS_3             1              66
  CLUS_4             4              33
D118V2, multiclass
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             4             104
  CLUS_3             4              34
D118V3, multiclass
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  CLUS_1             5              81
  CLUS_2             7              76
  CLUS_3             0              36
  CLUS_4             0              16
D118V4, multiclass
D118V5, multiclass
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             2              69
  CLUS_3             0              20
  CLUS_4             2              20
D118V6, multiclass
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             2             107
  CLUS_3             2              17
  CLUS_4             0               9
D118V7, binary
                 cls
clus                0   1
  DACH2 MUTATED    10   0
  DACH2 WILD-TYPE 189   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED     10    0
  DACH2 WILD-TYPE  189    8
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  CLUS_1            10             189
  CLUS_3             0               8
D118V8, multiclass
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  CLUS_1             8             182
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(119) Variable = DOCK2 MUTATION ANALYSIS
D119V1, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             8              36
  CLUS_2             1              56
  CLUS_3             1              66
  CLUS_4             7              30
D119V2, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1            12              47
  CLUS_2             3             105
  CLUS_3             2              36
D119V3, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             1              85
  CLUS_2            17              66
  CLUS_3             2              34
  CLUS_4             1              15
D119V4, multiclass
[1] "Remove cluster labels:" "DOCK2 MUTATED"         
clus
  DOCK2 MUTATED DOCK2 WILD-TYPE 
              2               5 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A026 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A036 
"DOCK2 WILD-TYPE" 
D119V5, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             6              65
  CLUS_3             2              18
  CLUS_4             4              18
D119V6, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            11              98
  CLUS_3             3              16
  CLUS_4             1               8
D119V7, binary
                 cls
clus                0   1
  DOCK2 MUTATED    20   0
  DOCK2 WILD-TYPE 179   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     20    0
  DOCK2 WILD-TYPE  179    8
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1            20             179
  CLUS_3             0               8
D119V8, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1            17             173
  CLUS_2             3               7
  CLUS_3             0               7

Clustering(120) Variable = PCDH11X MUTATION ANALYSIS
D120V1, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               7                37
  CLUS_2               1                56
  CLUS_3               2                65
  CLUS_4               3                34
D120V2, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               5                54
  CLUS_2               5               103
  CLUS_3               3                35
D120V3, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               4                82
  CLUS_2               9                74
  CLUS_3               0                36
  CLUS_4               1                15
D120V4, multiclass
[1] "Remove cluster labels:" "PCDH11X MUTATED"       
clus
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                1                 6 
       TCGA-A6-2672        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
D120V5, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               2                42
  CLUS_2               1                70
  CLUS_3               0                20
  CLUS_4               3                19
D120V6, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4               105
  CLUS_3               2                17
  CLUS_4               0                 9
D120V7, binary
                   cls
clus                  0   1
  PCDH11X MUTATED    13   0
  PCDH11X WILD-TYPE 186   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED     13    0
  PCDH11X WILD-TYPE  186    8
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1              13               186
  CLUS_3               0                 8
D120V8, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1              11               179
  CLUS_2               2                 8
  CLUS_3               0                 7

Clustering(121) Variable = KCNA4 MUTATION ANALYSIS
D121V1, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             3              34
D121V2, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             2             106
  CLUS_3             2              36
D121V3, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             0              86
  CLUS_2            10              73
  CLUS_3             2              34
  CLUS_4             0              16
D121V4, multiclass
D121V5, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             1              70
  CLUS_3             1              19
  CLUS_4             4              18
D121V6, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             3             106
  CLUS_3             3              16
  CLUS_4             0               9
D121V7, binary
                 cls
clus                0   1
  KCNA4 MUTATED    10   0
  KCNA4 WILD-TYPE 189   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED     10    0
  KCNA4 WILD-TYPE  189    8
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1            10             189
  CLUS_3             0               8
D121V8, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(122) Variable = DPP10 MUTATION ANALYSIS
D122V1, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             1              56
  CLUS_3             3              64
  CLUS_4             7              30
D122V2, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             5             103
  CLUS_3             1              37
D122V3, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             9              74
  CLUS_3             0              36
  CLUS_4             0              16
D122V4, multiclass
[1] "Remove cluster labels:" "DPP10 MUTATED"         
clus
  DPP10 MUTATED DPP10 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
D122V5, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             5              66
  CLUS_3             1              19
  CLUS_4             3              19
D122V6, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6             103
  CLUS_3             3              16
  CLUS_4             1               8
D122V7, binary
                 cls
clus                0   1
  DPP10 MUTATED    11   1
  DPP10 WILD-TYPE 188   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED     11    1
  DPP10 WILD-TYPE  188    7
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1            11             188
  CLUS_3             1               7
D122V8, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1            10             180
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(123) Variable = EVC2 MUTATION ANALYSIS
D123V1, multiclass
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  CLUS_1            5             39
  CLUS_2            2             55
  CLUS_3            2             65
  CLUS_4            8             29
D123V2, multiclass
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  CLUS_1           10             49
  CLUS_2            7            101
  CLUS_3            0             38
D123V3, multiclass
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  CLUS_1            3             83
  CLUS_2           12             71
  CLUS_3            2             34
  CLUS_4            0             16
D123V4, multiclass
D123V5, multiclass
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            8             63
  CLUS_3            2             18
  CLUS_4            5             17
D123V6, multiclass
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  CLUS_1            0             20
  CLUS_2           10             99
  CLUS_3            4             15
  CLUS_4            2              7
D123V7, binary
                cls
clus               0   1
  EVC2 MUTATED    14   0
  EVC2 WILD-TYPE 185   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED     14    0
  EVC2 WILD-TYPE  185    8
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  CLUS_1           14            185
  CLUS_3            0              8
D123V8, multiclass
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  CLUS_1           13            177
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(124) Variable = C15ORF2 MUTATION ANALYSIS
D124V1, multiclass
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  CLUS_1               4                40
  CLUS_2               1                56
  CLUS_3               0                67
  CLUS_4               3                34
D124V2, multiclass
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  CLUS_1               4                55
  CLUS_2               3               105
  CLUS_3               1                37
D124V3, multiclass
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  CLUS_1               2                84
  CLUS_2               8                75
  CLUS_3               2                34
  CLUS_4               0                16
D124V4, multiclass
[1] "Remove cluster labels:" "C15ORF2 MUTATED"       
clus
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
                1                 6 
       TCGA-A6-2672        TCGA-AG-A01W        TCGA-AG-A020        TCGA-AG-A026 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
D124V5, multiclass
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  CLUS_1               1                43
  CLUS_2               4                67
  CLUS_3               1                19
  CLUS_4               3                19
D124V6, multiclass
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               4               105
  CLUS_3               3                16
  CLUS_4               1                 8
D124V7, binary
                   cls
clus                  0   1
  C15ORF2 MUTATED     8   1
  C15ORF2 WILD-TYPE 191   7
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C15ORF2 MUTATED      8    1
  C15ORF2 WILD-TYPE  191    7
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  CLUS_1               8               191
  CLUS_3               1                 7
D124V8, multiclass
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  CLUS_1               7               183
  CLUS_2               0                10
  CLUS_3               2                 5

Clustering(125) Variable = NLRP5 MUTATION ANALYSIS
D125V1, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             4              33
D125V2, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             5             103
  CLUS_3             2              36
D125V3, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             8              75
  CLUS_3             2              34
  CLUS_4             1              15
D125V4, multiclass
D125V5, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             4              67
  CLUS_3             0              20
  CLUS_4             3              19
D125V6, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5             104
  CLUS_3             4              15
  CLUS_4             0               9
D125V7, binary
                 cls
clus                0   1
  NLRP5 MUTATED    10   0
  NLRP5 WILD-TYPE 189   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED     10    0
  NLRP5 WILD-TYPE  189    8
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1            10             189
  CLUS_3             0               8
D125V8, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(126) Variable = BTNL8 MUTATION ANALYSIS
D126V1, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              57
  CLUS_3             1              66
  CLUS_4             0              37
D126V2, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             1             107
  CLUS_3             0              38
D126V3, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             3              80
  CLUS_3             0              36
  CLUS_4             0              16
D126V4, multiclass
D126V5, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             1              70
  CLUS_3             0              20
  CLUS_4             0              22
D126V6, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             3             106
  CLUS_3             0              19
  CLUS_4             0               9
D126V7, binary
                 cls
clus                0   1
  BTNL8 MUTATED     3   0
  BTNL8 WILD-TYPE 196   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      3    0
  BTNL8 WILD-TYPE  196    8
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             3             196
  CLUS_3             0               8
D126V8, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             3             187
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(127) Variable = KLK2 MUTATION ANALYSIS
D127V1, multiclass
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            1             56
  CLUS_3            0             67
  CLUS_4            1             36
D127V2, multiclass
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            1            107
  CLUS_3            0             38
D127V3, multiclass
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            2             81
  CLUS_3            0             36
  CLUS_4            0             16
D127V4, multiclass
D127V5, multiclass
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            155 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3710 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00E 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AF-2689     TCGA-AF-3400 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3578     TCGA-AG-3580 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609     TCGA-AG-3612 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
D127V6, multiclass
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            155 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3710 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00E 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AF-2689     TCGA-AF-3400 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3578     TCGA-AG-3580 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609     TCGA-AG-3612 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
D127V7, binary
                cls
clus               0   1
  KLK2 MUTATED     2   0
  KLK2 WILD-TYPE 197   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      2    0
  KLK2 WILD-TYPE  197    8
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  CLUS_1            2            197
  CLUS_3            0              8
D127V8, multiclass
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            205 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3556 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667     TCGA-AA-3672 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679     TCGA-AA-3680 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685     TCGA-AA-3688 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3695     TCGA-AA-3696 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3949     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A00D     TCGA-AA-A00J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A010     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01P     TCGA-AA-A01R     TCGA-AA-A01S 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A022     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AF-2689     TCGA-AF-2691 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3887 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A011     TCGA-AG-A015 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036     TCGA-AY-4070 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AY-4071 
"KLK2 WILD-TYPE" 

Clustering(128) Variable = LUZP2 MUTATION ANALYSIS
D128V1, multiclass
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             0              57
  CLUS_3             4              63
  CLUS_4             2              35
D128V2, multiclass
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             2             106
  CLUS_3             3              35
D128V3, multiclass
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             2              81
  CLUS_3             3              33
  CLUS_4             0              16
D128V4, multiclass
D128V5, multiclass
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              71
  CLUS_3             1              19
  CLUS_4             2              20
D128V6, multiclass
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2             107
  CLUS_3             2              17
  CLUS_4             1               8
D128V7, binary
                 cls
clus                0   1
  LUZP2 MUTATED     5   0
  LUZP2 WILD-TYPE 194   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      5    0
  LUZP2 WILD-TYPE  194    8
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  CLUS_1             5             194
  CLUS_3             0               8
D128V8, multiclass
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  CLUS_1             5             185
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(129) Variable = NXF5 MUTATION ANALYSIS
D129V1, multiclass
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            0             57
  CLUS_3            4             63
  CLUS_4            1             36
D129V2, multiclass
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  CLUS_1            1             58
  CLUS_2            4            104
  CLUS_3            1             37
D129V3, multiclass
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            4             79
  CLUS_3            0             36
  CLUS_4            1             15
D129V4, multiclass
[1] "Remove cluster labels:" "NXF5 MUTATED"          
clus
  NXF5 MUTATED NXF5 WILD-TYPE 
             1              6 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A036 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
D129V5, multiclass
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            2             69
  CLUS_3            1             19
  CLUS_4            0             22
D129V6, multiclass
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            4            105
  CLUS_3            0             19
  CLUS_4            0              9
D129V7, binary
                cls
clus               0   1
  NXF5 MUTATED     6   0
  NXF5 WILD-TYPE 193   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  NXF5 MUTATED      6    0
  NXF5 WILD-TYPE  193    8
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  CLUS_1            6            193
  CLUS_3            0              8
D129V8, multiclass
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  CLUS_1            4            186
  CLUS_2            2              8
  CLUS_3            0              7

Clustering(130) Variable = PCDHB5 MUTATION ANALYSIS
D130V1, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              5               39
  CLUS_2              2               55
  CLUS_3              3               64
  CLUS_4              4               33
D130V2, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              6               53
  CLUS_2              6              102
  CLUS_3              2               36
D130V3, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              2               84
  CLUS_2             10               73
  CLUS_3              2               34
  CLUS_4              0               16
D130V4, multiclass
D130V5, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              2               69
  CLUS_3              2               18
  CLUS_4              4               18
D130V6, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              5              104
  CLUS_3              4               15
  CLUS_4              2                7
D130V7, binary
                  cls
clus                 0   1
  PCDHB5 MUTATED    11   1
  PCDHB5 WILD-TYPE 188   7
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED     11    1
  PCDHB5 WILD-TYPE  188    7
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1             11              188
  CLUS_3              1                7
D130V8, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1             11              179
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(131) Variable = LOXL2 MUTATION ANALYSIS
D131V1, multiclass
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              56
  CLUS_3             3              64
  CLUS_4             1              36
D131V2, multiclass
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             3             105
  CLUS_3             2              36
D131V3, multiclass
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             6              77
  CLUS_3             0              36
  CLUS_4             1              15
D131V4, multiclass
[1] "Remove cluster labels:" "LOXL2 MUTATED"         
clus
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A036 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
D131V5, multiclass
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              70
  CLUS_3             1              19
  CLUS_4             1              21
D131V6, multiclass
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             3             106
  CLUS_3             1              18
  CLUS_4             0               9
D131V7, binary
                 cls
clus                0   1
  LOXL2 MUTATED     9   0
  LOXL2 WILD-TYPE 190   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LOXL2 MUTATED      9    0
  LOXL2 WILD-TYPE  190    8
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  CLUS_1             9             190
  CLUS_3             0               8
D131V8, multiclass
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  CLUS_1             8             182
  CLUS_2             0              10
  CLUS_3             1               6

Clustering(132) Variable = UBQLNL MUTATION ANALYSIS
D132V1, multiclass
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  CLUS_1              3               41
  CLUS_2              0               57
  CLUS_3              2               65
  CLUS_4              0               37
D132V2, multiclass
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  CLUS_1              3               56
  CLUS_2              1              107
  CLUS_3              1               37
D132V3, multiclass
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  CLUS_1              2               84
  CLUS_2              2               81
  CLUS_3              1               35
  CLUS_4              0               16
D132V4, multiclass
D132V5, multiclass
[1] "Remove cluster labels:" "UBQLNL MUTATED"        
clus
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               2              155 
      TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3810 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519       TCGA-AA-3520 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525       TCGA-AA-3529 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3856       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3955 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-A004 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024       TCGA-AA-A029 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3582       TCGA-AG-3583 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3601 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609       TCGA-AG-3612 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
D132V6, multiclass
[1] "Remove cluster labels:" "UBQLNL MUTATED"        
clus
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               2              155 
      TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3810 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519       TCGA-AA-3520 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525       TCGA-AA-3529 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3856       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3955 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-A004 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024       TCGA-AA-A029 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3582       TCGA-AG-3583 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3601 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609       TCGA-AG-3612 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
D132V7, binary
                  cls
clus                 0   1
  UBQLNL MUTATED     5   0
  UBQLNL WILD-TYPE 194   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBQLNL MUTATED      5    0
  UBQLNL WILD-TYPE  194    8
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  CLUS_1              5              194
  CLUS_3              0                8
D132V8, multiclass
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  CLUS_1              5              185
  CLUS_2              0               10
  CLUS_3              0                7

Clustering(133) Variable = MYO1B MUTATION ANALYSIS
D133V1, multiclass
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  CLUS_1             6              38
  CLUS_2             1              56
  CLUS_3             1              66
  CLUS_4             4              33
D133V2, multiclass
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  CLUS_1             8              51
  CLUS_2             1             107
  CLUS_3             3              35
D133V3, multiclass
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  CLUS_1             2              84
  CLUS_2            11              72
  CLUS_3             0              36
  CLUS_4             0              16
D133V4, multiclass
[1] "Remove cluster labels:" "MYO1B MUTATED"         
clus
  MYO1B MUTATED MYO1B WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A036 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
D133V5, multiclass
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  CLUS_1             3              41
  CLUS_2             0              71
  CLUS_3             1              19
  CLUS_4             3              19
D133V6, multiclass
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5             104
  CLUS_3             2              17
  CLUS_4             0               9
D133V7, binary
                 cls
clus                0   1
  MYO1B MUTATED    12   0
  MYO1B WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO1B MUTATED     12    0
  MYO1B WILD-TYPE  187    8
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D133V8, multiclass
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  CLUS_1            11             179
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(134) Variable = SPATA17 MUTATION ANALYSIS
D134V1, multiclass
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  CLUS_1               4                40
  CLUS_2               1                56
  CLUS_3               1                66
  CLUS_4               3                34
D134V2, multiclass
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  CLUS_1               4                55
  CLUS_2               3               105
  CLUS_3               2                36
D134V3, multiclass
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  CLUS_1               1                85
  CLUS_2               7                76
  CLUS_3               0                36
  CLUS_4               1                15
D134V4, multiclass
D134V5, multiclass
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  CLUS_1               3                41
  CLUS_2               2                69
  CLUS_3               0                20
  CLUS_4               2                20
D134V6, multiclass
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  CLUS_1               2                18
  CLUS_2               3               106
  CLUS_3               2                17
  CLUS_4               0                 9
D134V7, binary
                   cls
clus                  0   1
  SPATA17 MUTATED     8   0
  SPATA17 WILD-TYPE 191   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      8    0
  SPATA17 WILD-TYPE  191    8
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  CLUS_1               8               191
  CLUS_3               0                 8
D134V8, multiclass
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  CLUS_1               8               182
  CLUS_2               0                10
  CLUS_3               0                 7

Clustering(135) Variable = RIMS1 MUTATION ANALYSIS
D135V1, multiclass
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              56
  CLUS_3             3              64
  CLUS_4             4              33
D135V2, multiclass
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             4             104
  CLUS_3             2              36
D135V3, multiclass
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  CLUS_1             1              85
  CLUS_2            13              70
  CLUS_3             1              35
  CLUS_4             0              16
D135V4, multiclass
[1] "Remove cluster labels:" "RIMS1 MUTATED"         
clus
  RIMS1 MUTATED RIMS1 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A036 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
D135V5, multiclass
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             3              68
  CLUS_3             2              18
  CLUS_4             2              20
D135V6, multiclass
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             8             101
  CLUS_3             2              17
  CLUS_4             0               9
D135V7, binary
                 cls
clus                0   1
  RIMS1 MUTATED    14   1
  RIMS1 WILD-TYPE 185   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED     14    1
  RIMS1 WILD-TYPE  185    7
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  CLUS_1            14             185
  CLUS_3             1               7
D135V8, multiclass
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  CLUS_1            14             176
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(136) Variable = COL12A1 MUTATION ANALYSIS
D136V1, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               4                40
  CLUS_2               3                54
  CLUS_3               3                64
  CLUS_4               9                28
D136V2, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               8                51
  CLUS_2               9                99
  CLUS_3               2                36
D136V3, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               4                82
  CLUS_2              14                69
  CLUS_3               2                34
  CLUS_4               1                15
D136V4, multiclass
D136V5, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               4                40
  CLUS_2               4                67
  CLUS_3               0                20
  CLUS_4               4                18
D136V6, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               8               101
  CLUS_3               4                15
  CLUS_4               0                 9
D136V7, binary
                   cls
clus                  0   1
  COL12A1 MUTATED    17   1
  COL12A1 WILD-TYPE 182   7
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL12A1 MUTATED     17    1
  COL12A1 WILD-TYPE  182    7
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              17               182
  CLUS_3               1                 7
D136V8, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              15               175
  CLUS_2               3                 7
  CLUS_3               0                 7

Clustering(137) Variable = JAKMIP2 MUTATION ANALYSIS
D137V1, multiclass
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  CLUS_1               7                37
  CLUS_2               2                55
  CLUS_3               1                66
  CLUS_4               2                35
D137V2, multiclass
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  CLUS_1               6                53
  CLUS_2               4               104
  CLUS_3               2                36
D137V3, multiclass
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  CLUS_1               2                84
  CLUS_2               9                74
  CLUS_3               1                35
  CLUS_4               0                16
D137V4, multiclass
[1] "Remove cluster labels:" "JAKMIP2 MUTATED"       
clus
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
                1                 6 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
D137V5, multiclass
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               4                67
  CLUS_3               1                19
  CLUS_4               3                19
D137V6, multiclass
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  CLUS_1               2                18
  CLUS_2               5               104
  CLUS_3               3                16
  CLUS_4               0                 9
D137V7, binary
                   cls
clus                  0   1
  JAKMIP2 MUTATED    11   1
  JAKMIP2 WILD-TYPE 188   7
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED     11    1
  JAKMIP2 WILD-TYPE  188    7
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  CLUS_1              11               188
  CLUS_3               1                 7
D137V8, multiclass
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  CLUS_1              10               180
  CLUS_2               2                 8
  CLUS_3               0                 7

Clustering(138) Variable = CDH10 MUTATION ANALYSIS
D138V1, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             0              57
  CLUS_3             1              66
  CLUS_4             8              29
D138V2, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             9              50
  CLUS_2             4             104
  CLUS_3             0              38
D138V3, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             0              86
  CLUS_2            13              70
  CLUS_3             1              35
  CLUS_4             0              16
D138V4, multiclass
D138V5, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             4              67
  CLUS_3             1              19
  CLUS_4             3              19
D138V6, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             7             102
  CLUS_3             2              17
  CLUS_4             1               8
D138V7, binary
                 cls
clus                0   1
  CDH10 MUTATED    12   0
  CDH10 WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED     12    0
  CDH10 WILD-TYPE  187    8
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D138V8, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            10             180
  CLUS_2             1               9
  CLUS_3             1               6

Clustering(139) Variable = EPHA5 MUTATION ANALYSIS
D139V1, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             3              54
  CLUS_3             1              66
  CLUS_4             5              32
D139V2, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             5             103
  CLUS_3             1              37
D139V3, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             8              75
  CLUS_3             0              36
  CLUS_4             2              14
D139V4, multiclass
D139V5, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             3              68
  CLUS_3             2              18
  CLUS_4             2              20
D139V6, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             7             102
  CLUS_3             3              16
  CLUS_4             0               9
D139V7, binary
                 cls
clus                0   1
  EPHA5 MUTATED    12   0
  EPHA5 WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED     12    0
  EPHA5 WILD-TYPE  187    8
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D139V8, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            11             179
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(140) Variable = ODZ1 MUTATION ANALYSIS
D140V1, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1            7             37
  CLUS_2            5             52
  CLUS_3            4             63
  CLUS_4            3             34
D140V2, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1            8             51
  CLUS_2            7            101
  CLUS_3            4             34
D140V3, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1            5             81
  CLUS_2           14             69
  CLUS_3            2             34
  CLUS_4            0             16
D140V4, multiclass
[1] "Remove cluster labels:" "ODZ1 MUTATED"          
clus
  ODZ1 MUTATED ODZ1 WILD-TYPE 
             1              6 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A026 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
D140V5, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1            6             38
  CLUS_2            6             65
  CLUS_3            2             18
  CLUS_4            3             19
D140V6, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1            2             18
  CLUS_2           13             96
  CLUS_3            2             17
  CLUS_4            0              9
D140V7, binary
                cls
clus               0   1
  ODZ1 MUTATED    20   2
  ODZ1 WILD-TYPE 179   6
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     20    2
  ODZ1 WILD-TYPE  179    6
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           20            179
  CLUS_3            2              6
D140V8, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           22            168
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(141) Variable = POSTN MUTATION ANALYSIS
D141V1, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             5              39
  CLUS_2             0              57
  CLUS_3             2              65
  CLUS_4             3              34
D141V2, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             5              54
  CLUS_2             2             106
  CLUS_3             3              35
D141V3, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             2              84
  CLUS_2             7              76
  CLUS_3             2              34
  CLUS_4             0              16
D141V4, multiclass
D141V5, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             2              42
  CLUS_2             2              69
  CLUS_3             0              20
  CLUS_4             1              21
D141V6, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             2              18
  CLUS_2             2             107
  CLUS_3             1              18
  CLUS_4             0               9
D141V7, binary
                 cls
clus                0   1
  POSTN MUTATED    10   0
  POSTN WILD-TYPE 189   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED     10    0
  POSTN WILD-TYPE  189    8
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1            10             189
  CLUS_3             0               8
D141V8, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1            10             180
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(142) Variable = SYNE1 MUTATION ANALYSIS
D142V1, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            14              30
  CLUS_2             8              49
  CLUS_3             6              61
  CLUS_4            17              20
D142V2, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            26              33
  CLUS_2            16              92
  CLUS_3             3              35
D142V3, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1             7              79
  CLUS_2            32              51
  CLUS_3             6              30
  CLUS_4             0              16
D142V4, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1             1               1
  CLUS_2             2               2
  CLUS_3             0               1
D142V5, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            10              34
  CLUS_2            12              59
  CLUS_3             6              14
  CLUS_4             5              17
D142V6, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1             5              15
  CLUS_2            21              88
  CLUS_3             4              15
  CLUS_4             3               6
D142V7, binary
                 cls
clus                0   1
  SYNE1 MUTATED    40   3
  SYNE1 WILD-TYPE 159   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     40    3
  SYNE1 WILD-TYPE  159    5
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            40             159
  CLUS_3             3               5
D142V8, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            38             152
  CLUS_2             5               5
  CLUS_3             0               7

Clustering(143) Variable = ZCWPW2 MUTATION ANALYSIS
D143V1, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               55
  CLUS_3              1               66
  CLUS_4              3               34
D143V2, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              5              103
  CLUS_3              0               38
D143V3, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              3               80
  CLUS_3              1               35
  CLUS_4              0               16
D143V4, multiclass
D143V5, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              4               67
  CLUS_3              0               20
  CLUS_4              1               21
D143V6, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4              105
  CLUS_3              1               18
  CLUS_4              1                8
D143V7, binary
                  cls
clus                 0   1
  ZCWPW2 MUTATED     7   0
  ZCWPW2 WILD-TYPE 192   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      7    0
  ZCWPW2 WILD-TYPE  192    8
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              7              192
  CLUS_3              0                8
D143V8, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              5              185
  CLUS_2              1                9
  CLUS_3              1                6

Clustering(144) Variable = ZEB2 MUTATION ANALYSIS
D144V1, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            6             38
  CLUS_2            3             54
  CLUS_3            1             66
  CLUS_4            4             33
D144V2, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            5             54
  CLUS_2            7            101
  CLUS_3            2             36
D144V3, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            4             82
  CLUS_2           10             73
  CLUS_3            1             35
  CLUS_4            0             16
D144V4, multiclass
D144V5, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            4             67
  CLUS_3            2             18
  CLUS_4            2             20
D144V6, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            8            101
  CLUS_3            2             17
  CLUS_4            0              9
D144V7, binary
                cls
clus               0   1
  ZEB2 MUTATED    11   1
  ZEB2 WILD-TYPE 188   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED     11    1
  ZEB2 WILD-TYPE  188    7
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1           11            188
  CLUS_3            1              7
D144V8, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1           11            179
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(145) Variable = TUSC3 MUTATION ANALYSIS
D145V1, multiclass
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             0              57
  CLUS_3             0              67
  CLUS_4             3              34
D145V2, multiclass
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             2             106
  CLUS_3             0              38
D145V3, multiclass
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             4              79
  CLUS_3             3              33
  CLUS_4             0              16
D145V4, multiclass
D145V5, multiclass
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             4              67
  CLUS_3             0              20
  CLUS_4             1              21
D145V6, multiclass
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4             105
  CLUS_3             1              18
  CLUS_4             0               9
D145V7, binary
                 cls
clus                0   1
  TUSC3 MUTATED     7   0
  TUSC3 WILD-TYPE 192   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      7    0
  TUSC3 WILD-TYPE  192    8
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  CLUS_1             7             192
  CLUS_3             0               8
D145V8, multiclass
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  CLUS_1             4             186
  CLUS_2             3               7
  CLUS_3             0               7

Clustering(146) Variable = CACNG7 MUTATION ANALYSIS
D146V1, multiclass
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1               56
  CLUS_3              1               66
  CLUS_4              0               37
D146V2, multiclass
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              1              107
  CLUS_3              2               36
D146V3, multiclass
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              1               82
  CLUS_3              1               35
  CLUS_4              1               15
D146V4, multiclass
[1] "Remove cluster labels:" "CACNG7 MUTATED"        
clus
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               2                5 
      TCGA-A6-2672       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02N 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A036 
"CACNG7 WILD-TYPE" 
D146V5, multiclass
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              0               71
  CLUS_3              0               20
  CLUS_4              2               20
D146V6, multiclass
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              1              108
  CLUS_3              2               17
  CLUS_4              0                9
D146V7, binary
                  cls
clus                 0   1
  CACNG7 MUTATED     6   0
  CACNG7 WILD-TYPE 193   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG7 MUTATED      6    0
  CACNG7 WILD-TYPE  193    8
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  CLUS_1              6              193
  CLUS_3              0                8
D146V8, multiclass
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  CLUS_1              5              185
  CLUS_2              0               10
  CLUS_3              1                6

Clustering(147) Variable = RWDD2B MUTATION ANALYSIS
D147V1, multiclass
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  CLUS_1              4               40
  CLUS_2              2               55
  CLUS_3              0               67
  CLUS_4              2               35
D147V2, multiclass
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  CLUS_1              4               55
  CLUS_2              3              105
  CLUS_3              1               37
D147V3, multiclass
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  CLUS_1              1               85
  CLUS_2              6               77
  CLUS_3              1               35
  CLUS_4              0               16
D147V4, multiclass
D147V5, multiclass
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               69
  CLUS_3              0               20
  CLUS_4              1               21
D147V6, multiclass
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3              106
  CLUS_3              1               18
  CLUS_4              0                9
D147V7, binary
                  cls
clus                 0   1
  RWDD2B MUTATED     7   0
  RWDD2B WILD-TYPE 192   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RWDD2B MUTATED      7    0
  RWDD2B WILD-TYPE  192    8
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  CLUS_1              7              192
  CLUS_3              0                8
D147V8, multiclass
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  CLUS_1              4              186
  CLUS_2              3                7
  CLUS_3              0                7

Clustering(148) Variable = SLC25A13 MUTATION ANALYSIS
D148V1, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                0                 57
  CLUS_3                3                 64
  CLUS_4                3                 34
D148V2, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                1                 58
  CLUS_2                4                104
  CLUS_3                2                 36
D148V3, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                2                 84
  CLUS_2                4                 79
  CLUS_3                0                 36
  CLUS_4                1                 15
D148V4, multiclass
D148V5, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                2                 69
  CLUS_3                1                 19
  CLUS_4                3                 19
D148V6, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                4                105
  CLUS_3                3                 16
  CLUS_4                0                  9
D148V7, binary
                    cls
clus                   0   1
  SLC25A13 MUTATED     6   0
  SLC25A13 WILD-TYPE 193   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SLC25A13 MUTATED      6    0
  SLC25A13 WILD-TYPE  193    8
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                6                193
  CLUS_3                0                  8
D148V8, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                4                186
  CLUS_2                2                  8
  CLUS_3                0                  7

Clustering(149) Variable = DPF2 MUTATION ANALYSIS
D149V1, multiclass
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            1             56
  CLUS_3            0             67
  CLUS_4            1             36
D149V2, multiclass
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            1            107
  CLUS_3            0             38
D149V3, multiclass
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            1             82
  CLUS_3            2             34
  CLUS_4            0             16
D149V4, multiclass
[1] "Remove cluster labels:" "DPF2 MUTATED"          
clus
  DPF2 MUTATED DPF2 WILD-TYPE 
             1              6 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A020     TCGA-AG-A026 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
D149V5, multiclass
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  CLUS_1            0             44
  CLUS_2            1             70
  CLUS_3            0             20
  CLUS_4            2             20
D149V6, multiclass
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            1            108
  CLUS_3            2             17
  CLUS_4            0              9
D149V7, binary
                cls
clus               0   1
  DPF2 MUTATED     4   0
  DPF2 WILD-TYPE 195   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      4    0
  DPF2 WILD-TYPE  195    8
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  CLUS_1            4            195
  CLUS_3            0              8
D149V8, multiclass
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  CLUS_1            3            187
  CLUS_2            0             10
  CLUS_3            1              6

Clustering(150) Variable = PCDH10 MUTATION ANALYSIS
D150V1, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              6               38
  CLUS_2              2               55
  CLUS_3              3               64
  CLUS_4              5               32
D150V2, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              9               50
  CLUS_2              6              102
  CLUS_3              1               37
D150V3, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              3               83
  CLUS_2             13               70
  CLUS_3              1               35
  CLUS_4              0               16
D150V4, multiclass
[1] "Remove cluster labels:" "PCDH10 MUTATED"        
clus
  PCDH10 MUTATED PCDH10 WILD-TYPE 
               1                6 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
D150V5, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              6               65
  CLUS_3              0               20
  CLUS_4              3               19
D150V6, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              9              100
  CLUS_3              2               17
  CLUS_4              0                9
D150V7, binary
                  cls
clus                 0   1
  PCDH10 MUTATED    15   0
  PCDH10 WILD-TYPE 184   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     15    0
  PCDH10 WILD-TYPE  184    8
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1             15              184
  CLUS_3              0                8
D150V8, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1             13              177
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(151) Variable = CDH12 MUTATION ANALYSIS
D151V1, multiclass
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             3              54
  CLUS_3             0              67
  CLUS_4             4              33
D151V2, multiclass
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             5             103
  CLUS_3             1              37
D151V3, multiclass
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             9              74
  CLUS_3             1              35
  CLUS_4             1              15
D151V4, multiclass
D151V5, multiclass
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             3              68
  CLUS_3             0              20
  CLUS_4             4              18
D151V6, multiclass
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             3             106
  CLUS_3             4              15
  CLUS_4             0               9
D151V7, binary
                 cls
clus                0   1
  CDH12 MUTATED    12   0
  CDH12 WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED     12    0
  CDH12 WILD-TYPE  187    8
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D151V8, multiclass
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  CLUS_1             8             182
  CLUS_2             3               7
  CLUS_3             1               6

Clustering(152) Variable = MCF2 MUTATION ANALYSIS
D152V1, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            3             54
  CLUS_3            1             66
  CLUS_4            5             32
D152V2, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            7             52
  CLUS_2            3            105
  CLUS_3            2             36
D152V3, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            3             83
  CLUS_2            8             75
  CLUS_3            1             35
  CLUS_4            0             16
D152V4, multiclass
D152V5, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            4             67
  CLUS_3            0             20
  CLUS_4            3             19
D152V6, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            5            104
  CLUS_3            2             17
  CLUS_4            0              9
D152V7, binary
                cls
clus               0   1
  MCF2 MUTATED    11   0
  MCF2 WILD-TYPE 188   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED     11    0
  MCF2 WILD-TYPE  188    8
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1           11            188
  CLUS_3            0              8
D152V8, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            9            181
  CLUS_2            2              8
  CLUS_3            0              7

Clustering(153) Variable = NCKAP5 MUTATION ANALYSIS
D153V1, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              6               38
  CLUS_2              2               55
  CLUS_3              1               66
  CLUS_4              4               33
D153V2, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              8               51
  CLUS_2              5              103
  CLUS_3              0               38
D153V3, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              3               83
  CLUS_2             10               73
  CLUS_3              2               34
  CLUS_4              0               16
D153V4, multiclass
D153V5, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              4               67
  CLUS_3              0               20
  CLUS_4              5               17
D153V6, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              0               20
  CLUS_2             10               99
  CLUS_3              3               16
  CLUS_4              0                9
D153V7, binary
                  cls
clus                 0   1
  NCKAP5 MUTATED    14   0
  NCKAP5 WILD-TYPE 185   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED     14    0
  NCKAP5 WILD-TYPE  185    8
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1             14              185
  CLUS_3              0                8
D153V8, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1             13              177
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(154) Variable = RIMS2 MUTATION ANALYSIS
D154V1, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             0              57
  CLUS_3             2              65
  CLUS_4             6              31
D154V2, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             5             103
  CLUS_3             2              36
D154V3, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             0              86
  CLUS_2            12              71
  CLUS_3             1              35
  CLUS_4             0              16
D154V4, multiclass
D154V5, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             4              67
  CLUS_3             0              20
  CLUS_4             3              19
D154V6, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5             104
  CLUS_3             2              17
  CLUS_4             0               9
D154V7, binary
                 cls
clus                0   1
  RIMS2 MUTATED    12   0
  RIMS2 WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     12    0
  RIMS2 WILD-TYPE  187    8
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D154V8, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            11             179
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(155) Variable = ATP7A MUTATION ANALYSIS
D155V1, multiclass
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  CLUS_1             0              44
  CLUS_2             2              55
  CLUS_3             1              66
  CLUS_4             1              36
D155V2, multiclass
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  CLUS_1             1              58
  CLUS_2             3             105
  CLUS_3             0              38
D155V3, multiclass
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  CLUS_1             2              84
  CLUS_2             3              80
  CLUS_3             1              35
  CLUS_4             0              16
D155V4, multiclass
D155V5, multiclass
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  CLUS_1             0              44
  CLUS_2             4              67
  CLUS_3             1              19
  CLUS_4             1              21
D155V6, multiclass
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4             105
  CLUS_3             1              18
  CLUS_4             1               8
D155V7, binary
                 cls
clus                0   1
  ATP7A MUTATED     6   0
  ATP7A WILD-TYPE 193   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      6    0
  ATP7A WILD-TYPE  193    8
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  CLUS_1             6             193
  CLUS_3             0               8
D155V8, multiclass
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  CLUS_1             6             184
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(156) Variable = TPTE MUTATION ANALYSIS
D156V1, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            4             40
  CLUS_2            0             57
  CLUS_3            2             65
  CLUS_4            4             33
D156V2, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            5             54
  CLUS_2            3            105
  CLUS_3            2             36
D156V3, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            0             86
  CLUS_2           10             73
  CLUS_3            0             36
  CLUS_4            2             14
D156V4, multiclass
D156V5, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            0             44
  CLUS_2            5             66
  CLUS_3            0             20
  CLUS_4            2             20
D156V6, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            0             20
  CLUS_2            5            104
  CLUS_3            2             17
  CLUS_4            0              9
D156V7, binary
                cls
clus               0   1
  TPTE MUTATED    11   0
  TPTE WILD-TYPE 188   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED     11    0
  TPTE WILD-TYPE  188    8
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1           11            188
  CLUS_3            0              8
D156V8, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1           10            180
  CLUS_2            1              9
  CLUS_3            0              7

Clustering(157) Variable = OR8B4 MUTATION ANALYSIS
D157V1, multiclass
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              57
  CLUS_3             1              66
  CLUS_4             3              34
D157V2, multiclass
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             3             105
  CLUS_3             0              38
D157V3, multiclass
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             5              78
  CLUS_3             0              36
  CLUS_4             0              16
D157V4, multiclass
D157V5, multiclass
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             2              69
  CLUS_3             0              20
  CLUS_4             2              20
D157V6, multiclass
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4             105
  CLUS_3             1              18
  CLUS_4             0               9
D157V7, binary
                 cls
clus                0   1
  OR8B4 MUTATED     5   0
  OR8B4 WILD-TYPE 194   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      5    0
  OR8B4 WILD-TYPE  194    8
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  CLUS_1             5             194
  CLUS_3             0               8
D157V8, multiclass
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  CLUS_1             4             186
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(158) Variable = SFMBT2 MUTATION ANALYSIS
D158V1, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              2               55
  CLUS_3              3               64
  CLUS_4              3               34
D158V2, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              6               53
  CLUS_2              4              104
  CLUS_3              2               36
D158V3, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              4               82
  CLUS_2              8               75
  CLUS_3              1               35
  CLUS_4              0               16
D158V4, multiclass
D158V5, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              5               66
  CLUS_3              0               20
  CLUS_4              0               22
D158V6, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              6              103
  CLUS_3              0               19
  CLUS_4              0                9
D158V7, binary
                  cls
clus                 0   1
  SFMBT2 MUTATED    13   0
  SFMBT2 WILD-TYPE 186   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED     13    0
  SFMBT2 WILD-TYPE  186    8
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1             13              186
  CLUS_3              0                8
D158V8, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1             12              178
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(159) Variable = FLRT2 MUTATION ANALYSIS
D159V1, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             4              53
  CLUS_3             1              66
  CLUS_4             4              33
D159V2, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             6             102
  CLUS_3             2              36
D159V3, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             9              74
  CLUS_3             0              36
  CLUS_4             2              14
D159V4, multiclass
D159V5, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             3              68
  CLUS_3             2              18
  CLUS_4             3              19
D159V6, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             7             102
  CLUS_3             2              17
  CLUS_4             0               9
D159V7, binary
                 cls
clus                0   1
  FLRT2 MUTATED    11   0
  FLRT2 WILD-TYPE 188   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED     11    0
  FLRT2 WILD-TYPE  188    8
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1            11             188
  CLUS_3             0               8
D159V8, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(160) Variable = BCHE MUTATION ANALYSIS
D160V1, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            4             40
  CLUS_2            3             54
  CLUS_3            0             67
  CLUS_4            1             36
D160V2, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            4             55
  CLUS_2            4            104
  CLUS_3            0             38
D160V3, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            3             83
  CLUS_2            6             77
  CLUS_3            0             36
  CLUS_4            0             16
D160V4, multiclass
D160V5, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            1             43
  CLUS_2            4             67
  CLUS_3            0             20
  CLUS_4            1             21
D160V6, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            0             20
  CLUS_2            5            104
  CLUS_3            1             18
  CLUS_4            0              9
D160V7, binary
                cls
clus               0   1
  BCHE MUTATED     8   0
  BCHE WILD-TYPE 191   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      8    0
  BCHE WILD-TYPE  191    8
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            8            191
  CLUS_3            0              8
D160V8, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            8            182
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(161) Variable = C8B MUTATION ANALYSIS
D161V1, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           3            41
  CLUS_2           4            53
  CLUS_3           0            67
  CLUS_4           1            36
D161V2, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           4            55
  CLUS_2           4           104
  CLUS_3           0            38
D161V3, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           3            83
  CLUS_2           5            78
  CLUS_3           2            34
  CLUS_4           0            16
D161V4, multiclass
D161V5, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           2            42
  CLUS_2           3            68
  CLUS_3           2            18
  CLUS_4           1            21
D161V6, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           1            19
  CLUS_2           6           103
  CLUS_3           1            18
  CLUS_4           0             9
D161V7, binary
               cls
clus              0   1
  C8B MUTATED    10   0
  C8B WILD-TYPE 189   8
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED     10    0
  C8B WILD-TYPE  189    8
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1          10           189
  CLUS_3           0             8
D161V8, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1          10           180
  CLUS_2           0            10
  CLUS_3           0             7

Clustering(162) Variable = FREM2 MUTATION ANALYSIS
D162V1, multiclass
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  CLUS_1             8              36
  CLUS_2             4              53
  CLUS_3             4              63
  CLUS_4             4              33
D162V2, multiclass
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  CLUS_1             8              51
  CLUS_2             8             100
  CLUS_3             4              34
D162V3, multiclass
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  CLUS_1             9              77
  CLUS_2            12              71
  CLUS_3             2              34
  CLUS_4             0              16
D162V4, multiclass
[1] "Remove cluster labels:" "FREM2 MUTATED"         
clus
  FREM2 MUTATED FREM2 WILD-TYPE 
              1               6 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
D162V5, multiclass
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             7              64
  CLUS_3             2              18
  CLUS_4             4              18
D162V6, multiclass
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  CLUS_1             2              18
  CLUS_2            12              97
  CLUS_3             3              16
  CLUS_4             0               9
D162V7, binary
                 cls
clus                0   1
  FREM2 MUTATED    21   1
  FREM2 WILD-TYPE 178   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     21    1
  FREM2 WILD-TYPE  178    7
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  CLUS_1            21             178
  CLUS_3             1               7
D162V8, multiclass
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  CLUS_1            20             170
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(163) Variable = ZNF167 MUTATION ANALYSIS
D163V1, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1               56
  CLUS_3              1               66
  CLUS_4              3               34
D163V2, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              3              105
  CLUS_3              2               36
D163V3, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              5               78
  CLUS_3              1               35
  CLUS_4              1               15
D163V4, multiclass
D163V5, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               69
  CLUS_3              0               20
  CLUS_4              2               20
D163V6, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3              106
  CLUS_3              2               17
  CLUS_4              0                9
D163V7, binary
                  cls
clus                 0   1
  ZNF167 MUTATED     6   0
  ZNF167 WILD-TYPE 193   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF167 MUTATED      6    0
  ZNF167 WILD-TYPE  193    8
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              6              193
  CLUS_3              0                8
D163V8, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              5              185
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(164) Variable = GABRG1 MUTATION ANALYSIS
D164V1, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              1               56
  CLUS_3              2               65
  CLUS_4              2               35
D164V2, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              3               56
  CLUS_2              4              104
  CLUS_3              1               37
D164V3, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              4               79
  CLUS_3              0               36
  CLUS_4              1               15
D164V4, multiclass
D164V5, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              2               69
  CLUS_3              0               20
  CLUS_4              1               21
D164V6, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              5              104
  CLUS_3              1               18
  CLUS_4              0                9
D164V7, binary
                  cls
clus                 0   1
  GABRG1 MUTATED     8   0
  GABRG1 WILD-TYPE 191   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      8    0
  GABRG1 WILD-TYPE  191    8
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              8              191
  CLUS_3              0                8
D164V8, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              6              184
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(165) Variable = SAT1 MUTATION ANALYSIS
D165V1, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            0             57
  CLUS_3            0             67
  CLUS_4            0             37
D165V2, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            0            108
  CLUS_3            1             37
D165V3, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            0             86
  CLUS_2            3             80
  CLUS_3            0             36
  CLUS_4            1             15
D165V4, multiclass
D165V5, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            1             70
  CLUS_3            0             20
  CLUS_4            1             21
D165V6, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            1            108
  CLUS_3            1             18
  CLUS_4            0              9
D165V7, binary
                cls
clus               0   1
  SAT1 MUTATED     4   0
  SAT1 WILD-TYPE 195   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE  195    8
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            4            195
  CLUS_3            0              8
D165V8, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            4            186
  CLUS_2            0             10
  CLUS_3            0              7

Clustering(166) Variable = CHD4 MUTATION ANALYSIS
D166V1, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            5             39
  CLUS_2            1             56
  CLUS_3            3             64
  CLUS_4            7             30
D166V2, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            9             50
  CLUS_2            5            103
  CLUS_3            2             36
D166V3, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            1             85
  CLUS_2           14             69
  CLUS_3            1             35
  CLUS_4            1             15
D166V4, multiclass
D166V5, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            5             39
  CLUS_2            3             68
  CLUS_3            0             20
  CLUS_4            3             19
D166V6, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            8            101
  CLUS_3            3             16
  CLUS_4            0              9
D166V7, binary
                cls
clus               0   1
  CHD4 MUTATED    17   0
  CHD4 WILD-TYPE 182   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED     17    0
  CHD4 WILD-TYPE  182    8
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1           17            182
  CLUS_3            0              8
D166V8, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1           13            177
  CLUS_2            4              6
  CLUS_3            0              7

Clustering(167) Variable = PCDHB2 MUTATION ANALYSIS
D167V1, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              7               37
  CLUS_2              2               55
  CLUS_3              1               66
  CLUS_4              4               33
D167V2, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              9               50
  CLUS_2              3              105
  CLUS_3              2               36
D167V3, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              3               83
  CLUS_2             11               72
  CLUS_3              0               36
  CLUS_4              0               16
D167V4, multiclass
[1] "Remove cluster labels:" "PCDHB2 MUTATED"        
clus
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               1                6 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
D167V5, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              5               66
  CLUS_3              0               20
  CLUS_4              3               19
D167V6, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              7              102
  CLUS_3              2               17
  CLUS_4              0                9
D167V7, binary
                  cls
clus                 0   1
  PCDHB2 MUTATED    12   0
  PCDHB2 WILD-TYPE 187   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED     12    0
  PCDHB2 WILD-TYPE  187    8
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1             12              187
  CLUS_3              0                8
D167V8, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1             11              179
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(168) Variable = TMTC1 MUTATION ANALYSIS
D168V1, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             1              56
  CLUS_3             3              64
  CLUS_4             3              34
D168V2, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             3             105
  CLUS_3             2              36
D168V3, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             1              85
  CLUS_2            10              73
  CLUS_3             1              35
  CLUS_4             1              15
D168V4, multiclass
D168V5, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             1              70
  CLUS_3             1              19
  CLUS_4             3              19
D168V6, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             4             105
  CLUS_3             3              16
  CLUS_4             0               9
D168V7, binary
                 cls
clus                0   1
  TMTC1 MUTATED    11   1
  TMTC1 WILD-TYPE 188   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED     11    1
  TMTC1 WILD-TYPE  188    7
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1            11             188
  CLUS_3             1               7
D168V8, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1            10             180
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(169) Variable = SH3GL3 MUTATION ANALYSIS
D169V1, multiclass
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              2               55
  CLUS_3              0               67
  CLUS_4              2               35
D169V2, multiclass
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              4              104
  CLUS_3              1               37
D169V3, multiclass
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              5               78
  CLUS_3              1               35
  CLUS_4              0               16
D169V4, multiclass
[1] "Remove cluster labels:" "SH3GL3 MUTATED"        
clus
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
D169V5, multiclass
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               69
  CLUS_3              0               20
  CLUS_4              3               19
D169V6, multiclass
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              5              104
  CLUS_3              1               18
  CLUS_4              0                9
D169V7, binary
                  cls
clus                 0   1
  SH3GL3 MUTATED     8   0
  SH3GL3 WILD-TYPE 191   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3GL3 MUTATED      8    0
  SH3GL3 WILD-TYPE  191    8
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  CLUS_1              8              191
  CLUS_3              0                8
D169V8, multiclass
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  CLUS_1              6              184
  CLUS_2              1                9
  CLUS_3              1                6

Clustering(170) Variable = ZFPM2 MUTATION ANALYSIS
D170V1, multiclass
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             1              56
  CLUS_3             1              66
  CLUS_4             4              33
D170V2, multiclass
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             4             104
  CLUS_3             0              38
D170V3, multiclass
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             4              79
  CLUS_3             1              35
  CLUS_4             0              16
D170V4, multiclass
D170V5, multiclass
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             2              69
  CLUS_3             0              20
  CLUS_4             3              19
D170V6, multiclass
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             2             107
  CLUS_3             3              16
  CLUS_4             0               9
D170V7, binary
                 cls
clus                0   1
  ZFPM2 MUTATED     5   0
  ZFPM2 WILD-TYPE 194   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFPM2 MUTATED      5    0
  ZFPM2 WILD-TYPE  194    8
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  CLUS_1             5             194
  CLUS_3             0               8
D170V8, multiclass
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  CLUS_1             3             187
  CLUS_2             1               9
  CLUS_3             1               6

Clustering(171) Variable = CACNG3 MUTATION ANALYSIS
D171V1, multiclass
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              1               56
  CLUS_3              0               67
  CLUS_4              3               34
D171V2, multiclass
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  CLUS_1              5               54
  CLUS_2              3              105
  CLUS_3              0               38
D171V3, multiclass
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              7               76
  CLUS_3              0               36
  CLUS_4              0               16
D171V4, multiclass
D171V5, multiclass
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              1               70
  CLUS_3              1               19
  CLUS_4              3               19
D171V6, multiclass
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              3              106
  CLUS_3              2               17
  CLUS_4              0                9
D171V7, binary
                  cls
clus                 0   1
  CACNG3 MUTATED     7   1
  CACNG3 WILD-TYPE 192   7
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG3 MUTATED      7    1
  CACNG3 WILD-TYPE  192    7
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  CLUS_1              7              192
  CLUS_3              1                7
D171V8, multiclass
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  CLUS_1              6              184
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(172) Variable = POTEB MUTATION ANALYSIS
D172V1, multiclass
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              57
  CLUS_3             3              64
  CLUS_4             2              35
D172V2, multiclass
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  CLUS_1             2              57
  CLUS_2             4             104
  CLUS_3             1              37
D172V3, multiclass
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  CLUS_1             1              85
  CLUS_2             4              79
  CLUS_3             2              34
  CLUS_4             1              15
D172V4, multiclass
D172V5, multiclass
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  CLUS_1             1              43
  CLUS_2             1              70
  CLUS_3             0              20
  CLUS_4             1              21
D172V6, multiclass
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2             107
  CLUS_3             1              18
  CLUS_4             0               9
D172V7, binary
                 cls
clus                0   1
  POTEB MUTATED     8   0
  POTEB WILD-TYPE 191   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEB MUTATED      8    0
  POTEB WILD-TYPE  191    8
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  CLUS_1             8             191
  CLUS_3             0               8
D172V8, multiclass
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  CLUS_1             8             182
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(173) Variable = GRIN2A MUTATION ANALYSIS
D173V1, multiclass
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  CLUS_1              5               39
  CLUS_2              2               55
  CLUS_3              6               61
  CLUS_4              4               33
D173V2, multiclass
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  CLUS_1              7               52
  CLUS_2              7              101
  CLUS_3              3               35
D173V3, multiclass
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  CLUS_1              5               81
  CLUS_2             13               70
  CLUS_3              1               35
  CLUS_4              0               16
D173V4, multiclass
D173V5, multiclass
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  CLUS_1              2               42
  CLUS_2              8               63
  CLUS_3              2               18
  CLUS_4              5               17
D173V6, multiclass
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  CLUS_1              0               20
  CLUS_2             13               96
  CLUS_3              4               15
  CLUS_4              0                9
D173V7, binary
                  cls
clus                 0   1
  GRIN2A MUTATED    15   1
  GRIN2A WILD-TYPE 184   7
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED     15    1
  GRIN2A WILD-TYPE  184    7
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  CLUS_1             15              184
  CLUS_3              1                7
D173V8, multiclass
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  CLUS_1             15              175
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(174) Variable = NRXN3 MUTATION ANALYSIS
D174V1, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             7              37
  CLUS_2             0              57
  CLUS_3             3              64
  CLUS_4             7              30
D174V2, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             9              50
  CLUS_2             5             103
  CLUS_3             3              35
D174V3, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             1              85
  CLUS_2            13              70
  CLUS_3             2              34
  CLUS_4             1              15
D174V4, multiclass
[1] "Remove cluster labels:" "NRXN3 MUTATED"         
clus
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              1               6 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
D174V5, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             5              66
  CLUS_3             1              19
  CLUS_4             3              19
D174V6, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             6             103
  CLUS_3             3              16
  CLUS_4             2               7
D174V7, binary
                 cls
clus                0   1
  NRXN3 MUTATED    15   0
  NRXN3 WILD-TYPE 184   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     15    0
  NRXN3 WILD-TYPE  184    8
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1            15             184
  CLUS_3             0               8
D174V8, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1            14             176
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(175) Variable = OR7C1 MUTATION ANALYSIS
D175V1, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             0              57
  CLUS_3             2              65
  CLUS_4             3              34
D175V2, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             0             108
  CLUS_3             2              36
D175V3, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             4              79
  CLUS_3             1              35
  CLUS_4             0              16
D175V4, multiclass
D175V5, multiclass
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             155 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3856      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AF-2689      TCGA-AF-3400 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3578      TCGA-AG-3580 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609      TCGA-AG-3612 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
D175V6, multiclass
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             155 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3856      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AF-2689      TCGA-AF-3400 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3578      TCGA-AG-3580 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609      TCGA-AG-3612 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
D175V7, binary
                 cls
clus                0   1
  OR7C1 MUTATED     6   0
  OR7C1 WILD-TYPE 193   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      6    0
  OR7C1 WILD-TYPE  193    8
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             6             193
  CLUS_3             0               8
D175V8, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             5             185
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(176) Variable = SPATA8 MUTATION ANALYSIS
D176V1, multiclass
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              203 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3821 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3842 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846       TCGA-AA-3848 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3870       TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3930       TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3949       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3999       TCGA-AG-4005       TCGA-AG-4007 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AY-4070       TCGA-AY-4071 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D176V2, multiclass
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              203 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3821 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3842 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846       TCGA-AA-3848 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3870       TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3930       TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3949       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3999       TCGA-AG-4005       TCGA-AG-4007 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AY-4070       TCGA-AY-4071 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D176V3, multiclass
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              0               83
  CLUS_3              0               36
  CLUS_4              0               16
D176V4, multiclass
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D176V5, multiclass
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              155 
      TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3810 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519       TCGA-AA-3520 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525       TCGA-AA-3529 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3856       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3955 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-A004 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024       TCGA-AA-A029 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3893       TCGA-AG-3896 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-4005 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D176V6, multiclass
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              155 
      TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3810 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519       TCGA-AA-3520 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525       TCGA-AA-3529 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3856       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3955 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-A004 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024       TCGA-AA-A029 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3893       TCGA-AG-3896 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-4005 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D176V7, binary
                  cls
clus                 0   1
  SPATA8 MUTATED     3   0
  SPATA8 WILD-TYPE 196   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      3    0
  SPATA8 WILD-TYPE  196    8
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  CLUS_1              3              196
  CLUS_3              0                8
D176V8, multiclass
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  CLUS_1              2              188
  CLUS_2              0               10
  CLUS_3              1                6

Clustering(177) Variable = OR2M2 MUTATION ANALYSIS
D177V1, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             2              35
D177V2, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             3             105
  CLUS_3             1              37
D177V3, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             3              80
  CLUS_3             1              35
  CLUS_4             0              16
D177V4, multiclass
D177V5, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             2              69
  CLUS_3             0              20
  CLUS_4             1              21
D177V6, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2             107
  CLUS_3             1              18
  CLUS_4             0               9
D177V7, binary
                 cls
clus                0   1
  OR2M2 MUTATED     5   0
  OR2M2 WILD-TYPE 194   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    0
  OR2M2 WILD-TYPE  194    8
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             5             194
  CLUS_3             0               8
D177V8, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             4             186
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(178) Variable = SORCS1 MUTATION ANALYSIS
D178V1, multiclass
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              4               53
  CLUS_3              2               65
  CLUS_4              5               32
D178V2, multiclass
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  CLUS_1              7               52
  CLUS_2              6              102
  CLUS_3              1               37
D178V3, multiclass
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  CLUS_1              3               83
  CLUS_2             10               73
  CLUS_3              2               34
  CLUS_4              0               16
D178V4, multiclass
D178V5, multiclass
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              5               66
  CLUS_3              1               19
  CLUS_4              2               20
D178V6, multiclass
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              9              100
  CLUS_3              1               18
  CLUS_4              1                8
D178V7, binary
                  cls
clus                 0   1
  SORCS1 MUTATED    14   0
  SORCS1 WILD-TYPE 185   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED     14    0
  SORCS1 WILD-TYPE  185    8
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  CLUS_1             14              185
  CLUS_3              0                8
D178V8, multiclass
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  CLUS_1             12              178
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(179) Variable = IL18R1 MUTATION ANALYSIS
D179V1, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              0               57
  CLUS_3              2               65
  CLUS_4              4               33
D179V2, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              5               54
  CLUS_2              2              106
  CLUS_3              2               36
D179V3, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              7               76
  CLUS_3              1               35
  CLUS_4              0               16
D179V4, multiclass
D179V5, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              3               68
  CLUS_3              0               20
  CLUS_4              2               20
D179V6, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              5              104
  CLUS_3              1               18
  CLUS_4              0                9
D179V7, binary
                  cls
clus                 0   1
  IL18R1 MUTATED    10   0
  IL18R1 WILD-TYPE 189   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED     10    0
  IL18R1 WILD-TYPE  189    8
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1             10              189
  CLUS_3              0                8
D179V8, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              8              182
  CLUS_2              2                8
  CLUS_3              0                7

Clustering(180) Variable = DPY19L1 MUTATION ANALYSIS
D180V1, multiclass
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               0                57
  CLUS_3               0                67
  CLUS_4               3                34
D180V2, multiclass
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  CLUS_1               3                56
  CLUS_2               2               106
  CLUS_3               0                38
D180V3, multiclass
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  CLUS_1               0                86
  CLUS_2               4                79
  CLUS_3               1                35
  CLUS_4               0                16
D180V4, multiclass
D180V5, multiclass
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               1                70
  CLUS_3               0                20
  CLUS_4               2                20
D180V6, multiclass
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               3               106
  CLUS_3               2                17
  CLUS_4               0                 9
D180V7, binary
                   cls
clus                  0   1
  DPY19L1 MUTATED     4   0
  DPY19L1 WILD-TYPE 195   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DPY19L1 MUTATED      4    0
  DPY19L1 WILD-TYPE  195    8
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  CLUS_1               4               195
  CLUS_3               0                 8
D180V8, multiclass
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  CLUS_1               3               187
  CLUS_2               1                 9
  CLUS_3               0                 7

Clustering(181) Variable = C16ORF45 MUTATION ANALYSIS
D181V1, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                0                 44
  CLUS_2                0                 57
  CLUS_3                1                 66
  CLUS_4                2                 35
D181V2, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                0                 59
  CLUS_2                2                106
  CLUS_3                1                 37
D181V3, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                0                 86
  CLUS_2                1                 82
  CLUS_3                2                 34
  CLUS_4                0                 16
D181V4, multiclass
D181V5, multiclass
[1] "Remove cluster labels:" "C16ORF45 MUTATED"      
clus
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 2                155 
        TCGA-A6-2672         TCGA-A6-2676         TCGA-A6-2677 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3810         TCGA-AA-3514 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3678         TCGA-AA-3681 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3688         TCGA-AA-3695         TCGA-AA-3696 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3831         TCGA-AA-3833 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3844         TCGA-AA-3845 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3852 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3854         TCGA-AA-3856         TCGA-AA-3864 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3869         TCGA-AA-3872 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3947         TCGA-AA-3955 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3986         TCGA-AA-3989 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00E 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01I 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A022 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AF-2689         TCGA-AF-3400 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3578 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3612         TCGA-AG-3727 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3896         TCGA-AG-3898 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-4001 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
D181V6, multiclass
[1] "Remove cluster labels:" "C16ORF45 MUTATED"      
clus
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 2                155 
        TCGA-A6-2672         TCGA-A6-2676         TCGA-A6-2677 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3810         TCGA-AA-3514 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3678         TCGA-AA-3681 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3688         TCGA-AA-3695         TCGA-AA-3696 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3831         TCGA-AA-3833 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3844         TCGA-AA-3845 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3852 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3854         TCGA-AA-3856         TCGA-AA-3864 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3869         TCGA-AA-3872 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3947         TCGA-AA-3955 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3986         TCGA-AA-3989 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00E 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01I 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A022 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AF-2689         TCGA-AF-3400 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3578 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3612         TCGA-AG-3727 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3896         TCGA-AG-3898 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-4001 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
D181V7, binary
                    cls
clus                   0   1
  C16ORF45 MUTATED     3   0
  C16ORF45 WILD-TYPE 196   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C16ORF45 MUTATED      3    0
  C16ORF45 WILD-TYPE  196    8
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                3                196
  CLUS_3                0                  8
D181V8, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                3                187
  CLUS_2                0                 10
  CLUS_3                0                  7

Clustering(182) Variable = INHBA MUTATION ANALYSIS
D182V1, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              57
  CLUS_3             1              66
  CLUS_4             5              32
D182V2, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             5              54
  CLUS_2             3             105
  CLUS_3             0              38
D182V3, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             1              85
  CLUS_2             7              76
  CLUS_3             0              36
  CLUS_4             0              16
D182V4, multiclass
D182V5, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             1              43
  CLUS_2             3              68
  CLUS_3             0              20
  CLUS_4             2              20
D182V6, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3             106
  CLUS_3             2              17
  CLUS_4             0               9
D182V7, binary
                 cls
clus                0   1
  INHBA MUTATED     5   2
  INHBA WILD-TYPE 194   6
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      5    2
  INHBA WILD-TYPE  194    6
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             5             194
  CLUS_3             2               6
D182V8, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             5             185
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(183) Variable = MIER3 MUTATION ANALYSIS
D183V1, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             0              57
  CLUS_3             0              67
  CLUS_4             5              32
D183V2, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             2             106
  CLUS_3             1              37
D183V3, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             0              86
  CLUS_2            10              73
  CLUS_3             1              35
  CLUS_4             0              16
D183V4, multiclass
[1] "Remove cluster labels:" "MIER3 MUTATED"         
clus
  MIER3 MUTATED MIER3 WILD-TYPE 
              1               6 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
D183V5, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             4              67
  CLUS_3             0              20
  CLUS_4             2              20
D183V6, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             7             102
  CLUS_3             1              18
  CLUS_4             0               9
D183V7, binary
                 cls
clus                0   1
  MIER3 MUTATED    11   0
  MIER3 WILD-TYPE 188   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED     11    0
  MIER3 WILD-TYPE  188    8
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1            11             188
  CLUS_3             0               8
D183V8, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1            10             180
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(184) Variable = ZNF585A MUTATION ANALYSIS
D184V1, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               4                40
  CLUS_2               0                57
  CLUS_3               1                66
  CLUS_4               5                32
D184V2, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               6                53
  CLUS_2               2               106
  CLUS_3               2                36
D184V3, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               0                86
  CLUS_2               9                74
  CLUS_3               1                35
  CLUS_4               0                16
D184V4, multiclass
D184V5, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               1                43
  CLUS_2               1                70
  CLUS_3               2                18
  CLUS_4               2                20
D184V6, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               0                20
  CLUS_2               2               107
  CLUS_3               2                17
  CLUS_4               2                 7
D184V7, binary
                   cls
clus                  0   1
  ZNF585A MUTATED     9   0
  ZNF585A WILD-TYPE 190   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF585A MUTATED      9    0
  ZNF585A WILD-TYPE  190    8
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               9               190
  CLUS_3               0                 8
D184V8, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               7               183
  CLUS_2               2                 8
  CLUS_3               0                 7

Clustering(185) Variable = TMPRSS13 MUTATION ANALYSIS
D185V1, multiclass
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  CLUS_1                2                 42
  CLUS_2                0                 57
  CLUS_3                1                 66
  CLUS_4                1                 36
D185V2, multiclass
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  CLUS_1                2                 57
  CLUS_2                1                107
  CLUS_3                1                 37
D185V3, multiclass
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  CLUS_1                0                 86
  CLUS_2                4                 79
  CLUS_3                0                 36
  CLUS_4                0                 16
D185V4, multiclass
D185V5, multiclass
[1] "Remove cluster labels:" "TMPRSS13 MUTATED"      
clus
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 2                155 
        TCGA-A6-2672         TCGA-A6-2676         TCGA-A6-2677 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3810         TCGA-AA-3514 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3678         TCGA-AA-3681 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3688         TCGA-AA-3695         TCGA-AA-3696 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3811         TCGA-AA-3812 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3818         TCGA-AA-3831 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3844 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3848         TCGA-AA-3850 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3856 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3864         TCGA-AA-3866         TCGA-AA-3869 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3930         TCGA-AA-3947 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3971         TCGA-AA-3972 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3982 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-A004 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00E         TCGA-AA-A00F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00Q         TCGA-AA-A00R 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01I         TCGA-AA-A01K 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01P         TCGA-AA-A01Q         TCGA-AA-A01R 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01S         TCGA-AA-A01T         TCGA-AA-A01V 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01X         TCGA-AA-A022         TCGA-AA-A024 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02O         TCGA-AA-A02W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02Y         TCGA-AA-A03F         TCGA-AA-A03J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-3400         TCGA-AF-3913 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3578         TCGA-AG-3580 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3609 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3727         TCGA-AG-3878 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3893 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3896         TCGA-AG-3898         TCGA-AG-3901 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3902         TCGA-AG-4001         TCGA-AG-4005 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
D185V6, multiclass
[1] "Remove cluster labels:" "TMPRSS13 MUTATED"      
clus
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 2                155 
        TCGA-A6-2672         TCGA-A6-2676         TCGA-A6-2677 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3810         TCGA-AA-3514 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3678         TCGA-AA-3681 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3688         TCGA-AA-3695         TCGA-AA-3696 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3811         TCGA-AA-3812 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3818         TCGA-AA-3831 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3844 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3848         TCGA-AA-3850 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3856 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3864         TCGA-AA-3866         TCGA-AA-3869 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3930         TCGA-AA-3947 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3971         TCGA-AA-3972 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3982 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-A004 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00E         TCGA-AA-A00F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00Q         TCGA-AA-A00R 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01I         TCGA-AA-A01K 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01P         TCGA-AA-A01Q         TCGA-AA-A01R 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01S         TCGA-AA-A01T         TCGA-AA-A01V 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01X         TCGA-AA-A022         TCGA-AA-A024 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02O         TCGA-AA-A02W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02Y         TCGA-AA-A03F         TCGA-AA-A03J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-3400         TCGA-AF-3913 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3578         TCGA-AG-3580 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3609 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3727         TCGA-AG-3878 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3893 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3896         TCGA-AG-3898         TCGA-AG-3901 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3902         TCGA-AG-4001         TCGA-AG-4005 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
D185V7, binary
                    cls
clus                   0   1
  TMPRSS13 MUTATED     4   0
  TMPRSS13 WILD-TYPE 195   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMPRSS13 MUTATED      4    0
  TMPRSS13 WILD-TYPE  195    8
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  CLUS_1                4                195
  CLUS_3                0                  8
D185V8, multiclass
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  CLUS_1                3                187
  CLUS_2                1                  9
  CLUS_3                0                  7

Clustering(186) Variable = FSTL5 MUTATION ANALYSIS
D186V1, multiclass
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             1              56
  CLUS_3             2              65
  CLUS_4             2              35
D186V2, multiclass
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             4             104
  CLUS_3             1              37
D186V3, multiclass
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             9              74
  CLUS_3             0              36
  CLUS_4             0              16
D186V4, multiclass
[1] "Remove cluster labels:" "FSTL5 MUTATED"         
clus
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              1               6 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
D186V5, multiclass
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             4              67
  CLUS_3             0              20
  CLUS_4             3              19
D186V6, multiclass
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6             103
  CLUS_3             2              17
  CLUS_4             1               8
D186V7, binary
                 cls
clus                0   1
  FSTL5 MUTATED    10   0
  FSTL5 WILD-TYPE 189   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED     10    0
  FSTL5 WILD-TYPE  189    8
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  CLUS_1            10             189
  CLUS_3             0               8
D186V8, multiclass
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  CLUS_1             8             182
  CLUS_2             1               9
  CLUS_3             1               6

Clustering(187) Variable = DOK5 MUTATION ANALYSIS
D187V1, multiclass
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             56
  CLUS_3            2             65
  CLUS_4            1             36
D187V2, multiclass
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            2            106
  CLUS_3            1             37
D187V3, multiclass
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            4             79
  CLUS_3            0             36
  CLUS_4            0             16
D187V4, multiclass
D187V5, multiclass
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  CLUS_1            0             44
  CLUS_2            3             68
  CLUS_3            0             20
  CLUS_4            0             22
D187V6, multiclass
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            3            106
  CLUS_3            0             19
  CLUS_4            0              9
D187V7, binary
                cls
clus               0   1
  DOK5 MUTATED     6   0
  DOK5 WILD-TYPE 193   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  DOK5 MUTATED      6    0
  DOK5 WILD-TYPE  193    8
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  CLUS_1            6            193
  CLUS_3            0              8
D187V8, multiclass
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  CLUS_1            5            185
  CLUS_2            0             10
  CLUS_3            1              6

Clustering(188) Variable = ZNF99 MUTATION ANALYSIS
D188V1, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             1              56
  CLUS_3             1              66
  CLUS_4             4              33
D188V2, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             3             105
  CLUS_3             2              36
D188V3, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             9              74
  CLUS_3             0              36
  CLUS_4             1              15
D188V4, multiclass
D188V5, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             1              70
  CLUS_3             0              20
  CLUS_4             3              19
D188V6, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             2             107
  CLUS_3             3              16
  CLUS_4             0               9
D188V7, binary
                 cls
clus                0   1
  ZNF99 MUTATED    10   0
  ZNF99 WILD-TYPE 189   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED     10    0
  ZNF99 WILD-TYPE  189    8
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1            10             189
  CLUS_3             0               8
D188V8, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             7             183
  CLUS_2             2               8
  CLUS_3             1               6

Clustering(189) Variable = GML MUTATION ANALYSIS
D189V1, multiclass
        clus
vv       GML MUTATED GML WILD-TYPE
  CLUS_1           3            41
  CLUS_2           1            56
  CLUS_3           1            66
  CLUS_4           1            36
D189V2, multiclass
        clus
vv       GML MUTATED GML WILD-TYPE
  CLUS_1           4            55
  CLUS_2           2           106
  CLUS_3           0            38
D189V3, multiclass
        clus
vv       GML MUTATED GML WILD-TYPE
  CLUS_1           2            84
  CLUS_2           4            79
  CLUS_3           0            36
  CLUS_4           0            16
D189V4, multiclass
D189V5, multiclass
[1] "Remove cluster labels:" "GML MUTATED"           
clus
  GML MUTATED GML WILD-TYPE 
            2           155 
   TCGA-A6-2672    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678    TCGA-A6-2683 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810    TCGA-AA-3514    TCGA-AA-3517 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3519    TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3525 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531    TCGA-AA-3532    TCGA-AA-3534 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3548    TCGA-AA-3552    TCGA-AA-3553    TCGA-AA-3554    TCGA-AA-3555 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3558    TCGA-AA-3560    TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3678    TCGA-AA-3681    TCGA-AA-3688    TCGA-AA-3695 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3811    TCGA-AA-3812    TCGA-AA-3814 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3819    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3852 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3854    TCGA-AA-3856    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3869 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3872    TCGA-AA-3930    TCGA-AA-3947    TCGA-AA-3955    TCGA-AA-3971 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975    TCGA-AA-3982    TCGA-AA-3986 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3989    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00E    TCGA-AA-A00F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00Q 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01I    TCGA-AA-A01K 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01P    TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01V    TCGA-AA-A01X    TCGA-AA-A022    TCGA-AA-A024    TCGA-AA-A029 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02F    TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02Y    TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AF-2689    TCGA-AF-3400 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605    TCGA-AG-3609    TCGA-AG-3612 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902    TCGA-AG-4001 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-4005    TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A026    TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
D189V6, multiclass
[1] "Remove cluster labels:" "GML MUTATED"           
clus
  GML MUTATED GML WILD-TYPE 
            2           155 
   TCGA-A6-2672    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678    TCGA-A6-2683 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810    TCGA-AA-3514    TCGA-AA-3517 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3519    TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3525 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531    TCGA-AA-3532    TCGA-AA-3534 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3548    TCGA-AA-3552    TCGA-AA-3553    TCGA-AA-3554    TCGA-AA-3555 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3558    TCGA-AA-3560    TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3678    TCGA-AA-3681    TCGA-AA-3688    TCGA-AA-3695 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3811    TCGA-AA-3812    TCGA-AA-3814 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3819    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3852 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3854    TCGA-AA-3856    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3869 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3872    TCGA-AA-3930    TCGA-AA-3947    TCGA-AA-3955    TCGA-AA-3971 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975    TCGA-AA-3982    TCGA-AA-3986 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3989    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00E    TCGA-AA-A00F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00Q 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01I    TCGA-AA-A01K 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01P    TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01V    TCGA-AA-A01X    TCGA-AA-A022    TCGA-AA-A024    TCGA-AA-A029 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02F    TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02Y    TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AF-2689    TCGA-AF-3400 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605    TCGA-AG-3609    TCGA-AG-3612 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902    TCGA-AG-4001 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-4005    TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A026    TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
D189V7, binary
               cls
clus              0   1
  GML MUTATED     6   0
  GML WILD-TYPE 193   8
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      6    0
  GML WILD-TYPE  193    8
        clus
vv       GML MUTATED GML WILD-TYPE
  CLUS_1           6           193
  CLUS_3           0             8
D189V8, multiclass
        clus
vv       GML MUTATED GML WILD-TYPE
  CLUS_1           6           184
  CLUS_2           0            10
  CLUS_3           0             7

Clustering(190) Variable = B2M MUTATION ANALYSIS
D190V1, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2            42
  CLUS_2           0            57
  CLUS_3           0            67
  CLUS_4           2            35
D190V2, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           3            56
  CLUS_2           1           107
  CLUS_3           0            38
D190V3, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            86
  CLUS_2           5            78
  CLUS_3           0            36
  CLUS_4           0            16
D190V4, multiclass
[1] "Remove cluster labels:" "B2M MUTATED"           
clus
  B2M MUTATED B2M WILD-TYPE 
            2             5 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A026    TCGA-AG-A036 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
D190V5, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            43
  CLUS_2           2            69
  CLUS_3           1            19
  CLUS_4           0            22
D190V6, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            20
  CLUS_2           4           105
  CLUS_3           0            19
  CLUS_4           0             9
D190V7, binary
               cls
clus              0   1
  B2M MUTATED     5   0
  B2M WILD-TYPE 194   8
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      5    0
  B2M WILD-TYPE  194    8
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           5           194
  CLUS_3           0             8
D190V8, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           3           187
  CLUS_2           2             8
  CLUS_3           0             7

Clustering(191) Variable = PPP2R2B MUTATION ANALYSIS
D191V1, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               1                43
  CLUS_2               1                56
  CLUS_3               0                67
  CLUS_4               1                36
D191V2, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               2                57
  CLUS_2               1               107
  CLUS_3               0                38
D191V3, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               0                86
  CLUS_2               2                81
  CLUS_3               1                35
  CLUS_4               0                16
D191V4, multiclass
D191V5, multiclass
[1] "Remove cluster labels:" "PPP2R2B MUTATED"       
clus
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                1               156 
       TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677        TCGA-A6-2678 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808        TCGA-A6-3810 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3514        TCGA-AA-3517        TCGA-AA-3519        TCGA-AA-3520 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3525        TCGA-AA-3529 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3548        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3672        TCGA-AA-3678 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3681        TCGA-AA-3688        TCGA-AA-3695        TCGA-AA-3696 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3831 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3844        TCGA-AA-3845 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3852        TCGA-AA-3854 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3856        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3955 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-A004 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3578 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3609 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3882        TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-4001        TCGA-AG-4005 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
D191V6, multiclass
[1] "Remove cluster labels:" "PPP2R2B MUTATED"       
clus
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                1               156 
       TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677        TCGA-A6-2678 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808        TCGA-A6-3810 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3514        TCGA-AA-3517        TCGA-AA-3519        TCGA-AA-3520 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3525        TCGA-AA-3529 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3548        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3672        TCGA-AA-3678 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3681        TCGA-AA-3688        TCGA-AA-3695        TCGA-AA-3696 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3831 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3844        TCGA-AA-3845 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3852        TCGA-AA-3854 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3856        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3955 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-A004 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3578 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3609 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3882        TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-4001        TCGA-AG-4005 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
D191V7, binary
                   cls
clus                  0   1
  PPP2R2B MUTATED     3   0
  PPP2R2B WILD-TYPE 196   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PPP2R2B MUTATED      3    0
  PPP2R2B WILD-TYPE  196    8
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               3               196
  CLUS_3               0                 8
D191V8, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               2               188
  CLUS_2               1                 9
  CLUS_3               0                 7

Clustering(192) Variable = LRTM1 MUTATION ANALYSIS
D192V1, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             2              55
  CLUS_3             0              67
  CLUS_4             3              34
D192V2, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             3             105
  CLUS_3             0              38
D192V3, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             5              78
  CLUS_3             0              36
  CLUS_4             0              16
D192V4, multiclass
D192V5, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             1              70
  CLUS_3             1              19
  CLUS_4             3              19
D192V6, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2             107
  CLUS_3             3              16
  CLUS_4             0               9
D192V7, binary
                 cls
clus                0   1
  LRTM1 MUTATED     5   0
  LRTM1 WILD-TYPE 194   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRTM1 MUTATED      5    0
  LRTM1 WILD-TYPE  194    8
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             5             194
  CLUS_3             0               8
D192V8, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             4             186
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(193) Variable = OR10G9 MUTATION ANALYSIS
D193V1, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               55
  CLUS_3              0               67
  CLUS_4              2               35
D193V2, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              3               56
  CLUS_2              2              106
  CLUS_3              0               38
D193V3, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              5               78
  CLUS_3              0               36
  CLUS_4              0               16
D193V4, multiclass
D193V5, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1               70
  CLUS_3              0               20
  CLUS_4              1               21
D193V6, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              2              107
  CLUS_3              1               18
  CLUS_4              0                9
D193V7, binary
                  cls
clus                 0   1
  OR10G9 MUTATED     5   0
  OR10G9 WILD-TYPE 194   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      5    0
  OR10G9 WILD-TYPE  194    8
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              5              194
  CLUS_3              0                8
D193V8, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              4              186
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(194) Variable = ERBB3 MUTATION ANALYSIS
D194V1, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             3              54
  CLUS_3             1              66
  CLUS_4             2              35
D194V2, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             5             103
  CLUS_3             0              38
D194V3, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             9              74
  CLUS_3             2              34
  CLUS_4             1              15
D194V4, multiclass
[1] "Remove cluster labels:" "ERBB3 MUTATED"         
clus
  ERBB3 MUTATED ERBB3 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A036 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
D194V5, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             6              65
  CLUS_3             1              19
  CLUS_4             3              19
D194V6, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            10              99
  CLUS_3             2              17
  CLUS_4             0               9
D194V7, binary
                 cls
clus                0   1
  ERBB3 MUTATED    12   0
  ERBB3 WILD-TYPE 187   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB3 MUTATED     12    0
  ERBB3 WILD-TYPE  187    8
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            12             187
  CLUS_3             0               8
D194V8, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            10             180
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(195) Variable = PSG8 MUTATION ANALYSIS
D195V1, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             56
  CLUS_3            2             65
  CLUS_4            1             36
D195V2, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            2            106
  CLUS_3            2             36
D195V3, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            4             79
  CLUS_3            1             35
  CLUS_4            2             14
D195V4, multiclass
D195V5, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            0             44
  CLUS_2            3             68
  CLUS_3            0             20
  CLUS_4            1             21
D195V6, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            3            106
  CLUS_3            1             18
  CLUS_4            0              9
D195V7, binary
                cls
clus               0   1
  PSG8 MUTATED     6   1
  PSG8 WILD-TYPE 193   7
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      6    1
  PSG8 WILD-TYPE  193    7
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            6            193
  CLUS_3            1              7
D195V8, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            6            184
  CLUS_2            0             10
  CLUS_3            1              6

Clustering(196) Variable = SYT16 MUTATION ANALYSIS
D196V1, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             0              57
  CLUS_3             2              65
  CLUS_4             2              35
D196V2, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             1             107
  CLUS_3             3              35
D196V3, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             6              77
  CLUS_3             1              35
  CLUS_4             0              16
D196V4, multiclass
D196V5, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              70
  CLUS_3             0              20
  CLUS_4             2              20
D196V6, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3             106
  CLUS_3             2              17
  CLUS_4             0               9
D196V7, binary
                 cls
clus                0   1
  SYT16 MUTATED     8   1
  SYT16 WILD-TYPE 191   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT16 MUTATED      8    1
  SYT16 WILD-TYPE  191    7
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             8             191
  CLUS_3             1               7
D196V8, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             8             182
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(197) Variable = LPHN3 MUTATION ANALYSIS
D197V1, multiclass
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             2              55
  CLUS_3             0              67
  CLUS_4             4              33
D197V2, multiclass
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             4             104
  CLUS_3             1              37
D197V3, multiclass
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             8              75
  CLUS_3             1              35
  CLUS_4             0              16
D197V4, multiclass
[1] "Remove cluster labels:" "LPHN3 MUTATED"         
clus
  LPHN3 MUTATED LPHN3 WILD-TYPE 
              2               5 
     TCGA-A6-2672      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A02N 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A036 
"LPHN3 WILD-TYPE" 
D197V5, multiclass
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              70
  CLUS_3             0              20
  CLUS_4             5              17
D197V6, multiclass
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6             103
  CLUS_3             3              16
  CLUS_4             0               9
D197V7, binary
                 cls
clus                0   1
  LPHN3 MUTATED    11   0
  LPHN3 WILD-TYPE 188   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPHN3 MUTATED     11    0
  LPHN3 WILD-TYPE  188    8
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  CLUS_1            11             188
  CLUS_3             0               8
D197V8, multiclass
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             2               8
  CLUS_3             0               7

Clustering(198) Variable = LRP2 MUTATION ANALYSIS
D198V1, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           12             32
  CLUS_2            7             50
  CLUS_3            3             64
  CLUS_4            9             28
D198V2, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           16             43
  CLUS_2           11             97
  CLUS_3            4             34
D198V3, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           10             76
  CLUS_2           23             60
  CLUS_3            1             35
  CLUS_4            1             15
D198V4, multiclass
D198V5, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1            7             37
  CLUS_2            8             63
  CLUS_3            4             16
  CLUS_4            5             17
D198V6, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1            3             17
  CLUS_2           17             92
  CLUS_3            4             15
  CLUS_4            0              9
D198V7, binary
                cls
clus               0   1
  LRP2 MUTATED    29   2
  LRP2 WILD-TYPE 170   6
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     29    2
  LRP2 WILD-TYPE  170    6
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           29            170
  CLUS_3            2              6
D198V8, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           27            163
  CLUS_2            3              7
  CLUS_3            1              6

Clustering(199) Variable = SOHLH2 MUTATION ANALYSIS
D199V1, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              2               55
  CLUS_3              2               65
  CLUS_4              2               35
D199V2, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              4               55
  CLUS_2              1              107
  CLUS_3              3               35
D199V3, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              5               78
  CLUS_3              0               36
  CLUS_4              1               15
D199V4, multiclass
[1] "Remove cluster labels:" "SOHLH2 MUTATED"        
clus
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               1                6 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A036 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
D199V5, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              1               70
  CLUS_3              2               18
  CLUS_4              2               20
D199V6, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3              106
  CLUS_3              1               18
  CLUS_4              1                8
D199V7, binary
                  cls
clus                 0   1
  SOHLH2 MUTATED     8   0
  SOHLH2 WILD-TYPE 191   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      8    0
  SOHLH2 WILD-TYPE  191    8
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              8              191
  CLUS_3              0                8
D199V8, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              7              183
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(200) Variable = ZIM3 MUTATION ANALYSIS
D200V1, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            2             55
  CLUS_3            0             67
  CLUS_4            3             34
D200V2, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            4            104
  CLUS_3            1             37
D200V3, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            7             76
  CLUS_3            0             36
  CLUS_4            0             16
D200V4, multiclass
[1] "Remove cluster labels:" "ZIM3 MUTATED"          
clus
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             2              5 
    TCGA-A6-2672     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A02N 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A036 
"ZIM3 WILD-TYPE" 
D200V5, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            1             70
  CLUS_3            0             20
  CLUS_4            4             18
D200V6, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            4            105
  CLUS_3            1             18
  CLUS_4            0              9
D200V7, binary
                cls
clus               0   1
  ZIM3 MUTATED     9   0
  ZIM3 WILD-TYPE 190   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      9    0
  ZIM3 WILD-TYPE  190    8
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            9            190
  CLUS_3            0              8
D200V8, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            6            184
  CLUS_2            2              8
  CLUS_3            1              6

Clustering(201) Variable = DSEL MUTATION ANALYSIS
D201V1, multiclass
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  CLUS_1            7             37
  CLUS_2            1             56
  CLUS_3            2             65
  CLUS_4            4             33
D201V2, multiclass
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  CLUS_1            7             52
  CLUS_2            6            102
  CLUS_3            1             37
D201V3, multiclass
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  CLUS_1            1             85
  CLUS_2           12             71
  CLUS_3            0             36
  CLUS_4            1             15
D201V4, multiclass
D201V5, multiclass
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  CLUS_1            1             43
  CLUS_2            5             66
  CLUS_3            0             20
  CLUS_4            4             18
D201V6, multiclass
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  CLUS_1            0             20
  CLUS_2            7            102
  CLUS_3            3             16
  CLUS_4            0              9
D201V7, binary
                cls
clus               0   1
  DSEL MUTATED    12   0
  DSEL WILD-TYPE 187   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED     12    0
  DSEL WILD-TYPE  187    8
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  CLUS_1           12            187
  CLUS_3            0              8
D201V8, multiclass
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  CLUS_1           10            180
  CLUS_2            2              8
  CLUS_3            0              7

Clustering(202) Variable = RNASE11 MUTATION ANALYSIS
D202V1, multiclass
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               1                56
  CLUS_3               1                66
  CLUS_4               1                36
D202V2, multiclass
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  CLUS_1               2                57
  CLUS_2               3               105
  CLUS_3               0                38
D202V3, multiclass
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  CLUS_1               0                86
  CLUS_2               3                80
  CLUS_3               2                34
  CLUS_4               0                16
D202V4, multiclass
D202V5, multiclass
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  CLUS_1               0                44
  CLUS_2               2                69
  CLUS_3               1                19
  CLUS_4               0                22
D202V6, multiclass
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               2               107
  CLUS_3               0                19
  CLUS_4               0                 9
D202V7, binary
                   cls
clus                  0   1
  RNASE11 MUTATED     4   0
  RNASE11 WILD-TYPE 195   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      4    0
  RNASE11 WILD-TYPE  195    8
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  CLUS_1               4               195
  CLUS_3               0                 8
D202V8, multiclass
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  CLUS_1               2               188
  CLUS_2               2                 8
  CLUS_3               0                 7

Clustering(203) Variable = MDGA2 MUTATION ANALYSIS
D203V1, multiclass
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             0              57
  CLUS_3             1              66
  CLUS_4             3              34
D203V2, multiclass
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             1             107
  CLUS_3             2              36
D203V3, multiclass
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             7              76
  CLUS_3             0              36
  CLUS_4             2              14
D203V4, multiclass
[1] "Remove cluster labels:" "MDGA2 MUTATED"         
clus
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              1               6 
     TCGA-A6-2672      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
D203V5, multiclass
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             2              69
  CLUS_3             0              20
  CLUS_4             3              19
D203V6, multiclass
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             3             106
  CLUS_3             3              16
  CLUS_4             0               9
D203V7, binary
                 cls
clus                0   1
  MDGA2 MUTATED     8   1
  MDGA2 WILD-TYPE 191   7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      8    1
  MDGA2 WILD-TYPE  191    7
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  CLUS_1             8             191
  CLUS_3             1               7
D203V8, multiclass
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  CLUS_1             9             181
  CLUS_2             0              10
  CLUS_3             0               7

Clustering(204) Variable = RBMS3 MUTATION ANALYSIS
D204V1, multiclass
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             2              55
  CLUS_3             0              67
  CLUS_4             1              36
D204V2, multiclass
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             2             106
  CLUS_3             1              37
D204V3, multiclass
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             2              81
  CLUS_3             1              35
  CLUS_4             0              16
D204V4, multiclass
D204V5, multiclass
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             4              67
  CLUS_3             0              20
  CLUS_4             0              22
D204V6, multiclass
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4             105
  CLUS_3             0              19
  CLUS_4             0               9
D204V7, binary
                 cls
clus                0   1
  RBMS3 MUTATED     6   0
  RBMS3 WILD-TYPE 193   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBMS3 MUTATED      6    0
  RBMS3 WILD-TYPE  193    8
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  CLUS_1             6             193
  CLUS_3             0               8
D204V8, multiclass
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  CLUS_1             5             185
  CLUS_2             1               9
  CLUS_3             0               7

Clustering(205) Variable = COL6A6 MUTATION ANALYSIS
D205V1, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              5               39
  CLUS_2              1               56
  CLUS_3              3               64
  CLUS_4              5               32
D205V2, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              6               53
  CLUS_2              6              102
  CLUS_3              2               36
D205V3, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              2               84
  CLUS_2             12               71
  CLUS_3              0               36
  CLUS_4              1               15
D205V4, multiclass
D205V5, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              5               39
  CLUS_2              6               65
  CLUS_3              0               20
  CLUS_4              2               20
D205V6, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              9              100
  CLUS_3              2               17
  CLUS_4              0                9
D205V7, binary
                  cls
clus                 0   1
  COL6A6 MUTATED    14   1
  COL6A6 WILD-TYPE 185   7
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED     14    1
  COL6A6 WILD-TYPE  185    7
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1             14              185
  CLUS_3              1                7
D205V8, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1             14              176
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(206) Variable = TMBIM4 MUTATION ANALYSIS
D206V1, multiclass
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              1               56
  CLUS_3              1               66
  CLUS_4              1               36
D206V2, multiclass
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              2              106
  CLUS_3              1               37
D206V3, multiclass
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              1               82
  CLUS_3              0               36
  CLUS_4              0               16
D206V4, multiclass
D206V5, multiclass
[1] "Remove cluster labels:" "TMBIM4 MUTATED"        
clus
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              155 
      TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3810 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519       TCGA-AA-3520 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525       TCGA-AA-3529 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3856       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3955 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3975       TCGA-AA-3982 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-A004       TCGA-AA-A00A 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00Q       TCGA-AA-A00R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01I 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A022       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3578 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3882       TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00Y       TCGA-AG-A011 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
D206V6, multiclass
[1] "Remove cluster labels:" "TMBIM4 MUTATED"        
clus
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              155 
      TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3810 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519       TCGA-AA-3520 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525       TCGA-AA-3529 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3856       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3955 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3975       TCGA-AA-3982 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-A004       TCGA-AA-A00A 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00Q       TCGA-AA-A00R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01I 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A022       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3578 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3882       TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00Y       TCGA-AG-A011 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
D206V7, binary
                  cls
clus                 0   1
  TMBIM4 MUTATED     3   0
  TMBIM4 WILD-TYPE 196   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      3    0
  TMBIM4 WILD-TYPE  196    8
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  CLUS_1              3              196
  CLUS_3              0                8
D206V8, multiclass
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  CLUS_1              3              187
  CLUS_2              0               10
  CLUS_3              0                7

Clustering(207) Variable = FAM135B MUTATION ANALYSIS
D207V1, multiclass
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  CLUS_1               5                39
  CLUS_2               1                56
  CLUS_3               1                66
  CLUS_4               4                33
D207V2, multiclass
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  CLUS_1               7                52
  CLUS_2               3               105
  CLUS_3               1                37
D207V3, multiclass
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  CLUS_1               3                83
  CLUS_2              10                73
  CLUS_3               1                35
  CLUS_4               1                15
D207V4, multiclass
D207V5, multiclass
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  CLUS_1               3                41
  CLUS_2               4                67
  CLUS_3               1                19
  CLUS_4               2                20
D207V6, multiclass
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  CLUS_1               0                20
  CLUS_2               9               100
  CLUS_3               1                18
  CLUS_4               0                 9
D207V7, binary
                   cls
clus                  0   1
  FAM135B MUTATED    13   2
  FAM135B WILD-TYPE 186   6
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM135B MUTATED     13    2
  FAM135B WILD-TYPE  186    6
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  CLUS_1              13               186
  CLUS_3               2                 6
D207V8, multiclass
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  CLUS_1              13               177
  CLUS_2               1                 9
  CLUS_3               1                 6

Clustering(208) Variable = CYP7B1 MUTATION ANALYSIS
D208V1, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              0               57
  CLUS_3              0               67
  CLUS_4              3               34
D208V2, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              4               55
  CLUS_2              1              107
  CLUS_3              0               38
D208V3, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              6               77
  CLUS_3              0               36
  CLUS_4              0               16
D208V4, multiclass
[1] "Remove cluster labels:" "CYP7B1 MUTATED"        
clus
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               2                5 
      TCGA-A6-2672       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A026 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A036 
"CYP7B1 WILD-TYPE" 
D208V5, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               69
  CLUS_3              1               19
  CLUS_4              3               19
D208V6, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              6              103
  CLUS_3              1               18
  CLUS_4              0                9
D208V7, binary
                  cls
clus                 0   1
  CYP7B1 MUTATED     5   0
  CYP7B1 WILD-TYPE 194   8
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      5    0
  CYP7B1 WILD-TYPE  194    8
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              5              194
  CLUS_3              0                8
D208V8, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              4              186
  CLUS_2              1                9
  CLUS_3              0                7

Clustering(209) Variable = SLC16A7 MUTATION ANALYSIS
D209V1, multiclass
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               1                56
  CLUS_3               1                66
  CLUS_4               5                32
D209V2, multiclass
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  CLUS_1               5                54
  CLUS_2               2               106
  CLUS_3               2                36
D209V3, multiclass
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  CLUS_1               2                84
  CLUS_2               7                76
  CLUS_3               0                36
  CLUS_4               0                16
D209V4, multiclass
D209V5, multiclass
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  CLUS_1               1                43
  CLUS_2               2                69
  CLUS_3               1                19
  CLUS_4               1                21
D209V6, multiclass
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               3               106
  CLUS_3               1                18
  CLUS_4               1                 8
D209V7, binary
                   cls
clus                  0   1
  SLC16A7 MUTATED     8   0
  SLC16A7 WILD-TYPE 191   8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      8    0
  SLC16A7 WILD-TYPE  191    8
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  CLUS_1               8               191
  CLUS_3               0                 8
D209V8, multiclass
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  CLUS_1               6               184
  CLUS_2               2                 8
  CLUS_3               0                 7
                    V1                     V2                     V3 
           "MRNA_CNMF"   "MRNA_CHIERARCHICAL"              "CN_CNMF" 
                    V4                     V5                     V6 
    "METHLYATION_CNMF"            "RPPA_CNMF"   "RPPA_CHIERARCHICAL" 
                    V7                     V8 
         "MIRSEQ_CNMF" "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
