GDAC_MergedClusteringPipeline Execution Log 4:14 PM Thu May 2, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/DLBC-TP/3140438/3.GDAC_CNMFselectcluster.Finished/DLBC-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile DLBC-TP
Execution Times:
Submitted: 16:14:38 02-05-13
Completed:
Elapsed: 00 hrs 38 mins 36 secs

step 1. GDAC_mergedClustering [id: 397166] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/DLBC-TP/3140438/3.GDAC_CNMFselectcluster.Finished/DLBC-TP.bestclus.txt
mergedfile DLBC-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf
mRNAseqhc
miRseqcnmf
miRseqhc
Output Files:
 DLBC-TP.mergedcluster.txt
 DLBC-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 16:14:38 02-05-13
Completed: 16:15:08 02-05-13
Elapsed: 00 hrs 00 mins 29 secs

step 2. GDAC_mergedReport [id: 397167]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster DLBC-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 16:14:38 02-05-13
Completed: 16:53:13 02-05-13
Elapsed: 00 hrs 38 mins 34 secs