GDAC_MergedClusteringPipeline Execution Log 2:56 PM Thu May 2, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/ESCA-TP/3140456/3.GDAC_CNMFselectcluster.Finished/ESCA-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile ESCA-TP
Execution Times:
Submitted: 14:56:50 02-05-13
Completed:
Elapsed: 01 hrs 51 mins 01 secs

step 1. GDAC_mergedClustering [id: 396590] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/ESCA-TP/3140456/3.GDAC_CNMFselectcluster.Finished/ESCA-TP.bestclus.txt
mergedfile ESCA-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf
mRNAseqhc
miRseqcnmf
miRseqhc
Output Files:
 ESCA-TP.mergedcluster.txt
 ESCA-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 14:56:50 02-05-13
Completed: 14:57:38 02-05-13
Elapsed: 00 hrs 00 mins 48 secs

step 2. GDAC_mergedReport [id: 396591]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster ESCA-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 14:56:50 02-05-13
Completed: 16:47:49 02-05-13
Elapsed: 01 hrs 50 mins 59 secs