Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-IG-A3I8-01A-11D-A246-01	TCGA-IG-A3QL-01A-11D-A246-01	TCGA-IG-A3Y9-01A-12D-A246-01	TCGA-IG-A3YA-01A-11D-A246-01	TCGA-IG-A3YB-01A-11D-A246-01	TCGA-IG-A3YC-01A-11D-A246-01	TCGA-L5-A43C-01A-11D-A246-01	TCGA-L5-A43E-01A-11D-A246-01	TCGA-L5-A43H-01A-11D-A246-01	TCGA-L5-A43I-01A-11D-A246-01	TCGA-L5-A43J-01A-12D-A246-01	TCGA-L5-A43M-01A-11D-A246-01	TCGA-LN-A49K-01A-11D-A246-01	TCGA-LN-A49L-01A-11D-A246-01	TCGA-LN-A49N-01A-11D-A246-01	TCGA-LN-A49O-01A-11D-A246-01	TCGA-LN-A49P-01A-11D-A246-01	TCGA-LN-A49R-01A-11D-A246-01	TCGA-LN-A49S-01A-11D-A246-01	TCGA-LN-A49V-01A-11D-A246-01	
Amplification Peak  1	1q42.3  	chr1:200527575-249250621(probes 98744:129195) 	chr1:235125867-235523501(probes 121316:121419)	chr1:235125867-235527646(probes 121316:121422)	0.24466	   0.24466		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	1	0	1	1	0	0	1	0	0	0	2	2	0	0	0	0	1	2	
Amplification Peak  2	2p15    	chr2:55425531-68349182(probes 161455:169012)    	chr2:63136228-63156545(probes 165798:165806)    	chr2:63136228-63161296(probes 165798:165809)    	0.24466	   0.24466		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	1	2	1	1	1	2	0	2	1	1	1	0	
Amplification Peak  3	3q28    	chr3:140610629-198022430(probes 338081:366978)	chr3:189298765-189749582(probes 363121:363438)	chr3:183116782-191097564(probes 359658:364309)	0.11848	   0.11848		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	1	1	2	1	1	0	2	2	0	1	0	2	1	1	1	1	2	1	2	
Amplification Peak  4	6p12.3  	chr6:41604078-62236966(probes 595029:604246)    	chr6:50465105-50501725(probes 600002:600018)    	chr6:50465105-50506183(probes 600002:600021)    	0.24466	   0.24466		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	2	2	1	
Amplification Peak  5	7p11.2  	chr7:54942676-55793009(probes 699166:699870)    	chr7:55221656-55507579(probes 699509:699714)    	chr7:54944082-55509820(probes 699167:699717)    	0.11848	   0.11848		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	2	0	0	1	1	1	1	2	1	0	1	0	0	1	0	1	0	2	
Amplification Peak  6	7q31.1  	chr7:77734989-110704701(probes 705868:723202)  	chr7:108283607-109069161(probes 721816:722287)	chr7:101753990-109072928(probes 718241:722290)	0.11395	   0.11395		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	1	2	1	1	1	1	1	0	1	2	0	2	1	0	1	1	
Amplification Peak  7	8q24.21 	chr8:124192181-133156466(probes 816704:822832)	chr8:128517808-128545382(probes 819657:819669)	chr8:113532726-142201391(probes 810119:829274)	0.0071269	 0.0071269		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	2	1	1	1	1	2	2	1	1	2	0	1	2	1	2	2	2	2	2	
Amplification Peak  8	10p11.21	chr10:35335459-35736943(probes 921948:922077)  	chr10:35338674-35621131(probes 921949:922024)  	chr10:35166628-35745220(probes 921940:922079)  	0.1082	    0.1082		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	2	1	0	0	0	1	0	0	2	2	1	0	
Amplification Peak  9	11p13   	chr11:34794025-35756636(probes 1000610:1001509)	chr11:35001099-35671706(probes 1000839:1001474)	chr11:34435552-37851494(probes 1000400:1002448)	0.038401	  0.043857		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	2	0	2	2	
Amplification Peak 10	11q13.3 	chr11:69523550-70248899(probes 1015267:1015631)	chr11:69940436-70248733(probes 1015471:1015630)	chr11:68008754-75309570(probes 1014473:1018273)	3.7199e-16	 3.865e-16		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	2	2	0	2	0	0	2	2	1	1	2	0	2	0	0	2	1	2	
Amplification Peak 11	12p13.33	chr12:1-2591028(probes 1056049:1056726)           	chr12:1-1861979(probes 1056049:1056252)           	chr12:1-1866203(probes 1056049:1056255)           	0.2172	    0.2172		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	1	2	0	0	0	1	0	1	2	1	1	0	2	1	1	1	1	
Amplification Peak 12	14q21.3 	chr14:48730510-55343878(probes 1201100:1205242)	chr14:50276029-50616877(probes 1201864:1202054)	chr14:50276029-50628247(probes 1201864:1202057)	0.23096	   0.23096		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	1	0	0	1	1	0	2	2	0	1	2	0	1	0	0	1	1	
Amplification Peak 13	18p11.31	chr18:1-3702370(probes 1358541:1359962)           	chr18:3307535-3701840(probes 1359721:1359961)    	chr18:3307535-3704822(probes 1359721:1359964)    	0.24466	   0.24466		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	0	1	1	0	1	0	1	1	0	2	2	
Amplification Peak 14	Xp21.1  	chrX:36176963-36179980(probes 1514707:1514713)  	chrX:36177025-36178123(probes 1514708:1514712)  	chrX:36168402-37496282(probes 1514699:1515252)  	0.058564	  0.058564		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	1	0	0	2	2	0	2	0	0	0	0	1	1	
Deletion Peak  1	2q22.1  	chr2:139655617-143637838(probes 201410:203840)	chr2:140976294-142894275(probes 202132:203403)	chr2:141755732-142085630(probes 202586:202794)	0.023373	   0.023373		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  2	3p14.2  	chr3:59034763-61547330(probes 293466:294361)    	chr3:59702822-61238217(probes 293974:294175)    	chr3:61116605-61119922(probes 294075:294076)    	0.023373	   0.023373		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	0	1	0	
Deletion Peak  3	3q11.1  	chr3:74568944-93778057(probes 303801:311502)    	chr3:90485637-93778057(probes 311490:311502)    	chr3:77727591-93740691(probes 305236:311493)    	0.058795	    0.13697		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  4	4q21.23 	chr4:76433725-140490090(probes 408146:443731)  	chr4:86392938-86925462(probes 414155:414541)    	chr4:86648425-86650018(probes 414349:414350)    	0.18599	    0.18599		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	0	0	0	1	0	0	0	1	1	1	0	0	1	0	1	0	0	
Deletion Peak  5	5q11.2  	chr5:44806004-101636216(probes 495510:523101)  	chr5:58260298-59787985(probes 500864:501808)    	chr5:58883803-58885578(probes 501337:501338)    	0.11429	    0.11429		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	0	1	0	0	1	0	0	1	0	1	0	1	0	0	1	1	1	
Deletion Peak  6	6p25.3  	chr6:1-21668433(probes 570323:584800)            	chr6:1621405-2177023(probes 570837:571207)        	chr6:1827226-2148519(probes 570994:571191)        	0.18599	    0.18599		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	1	1	1	0	1	0	1	0	1	0	1	0	0	1	
Deletion Peak  7	7q31.1  	chr7:109598162-159138663(probes 722561:748220)	chr7:110725672-110766749(probes 723222:723249)	chr7:110742455-111356845(probes 723233:723261)	0.16881	    0.16881		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	1	1	0	0	1	0	0	0	0	1	0	0	1	0	0	
Deletion Peak  8	9p21.3  	chr9:21865498-22448737(probes 843239:843603)    	chr9:21959052-21977193(probes 843290:843291)    	chr9:21410163-23971908(probes 842962:844614)    	2.6068e-14	 2.6068e-14		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	0	
Deletion Peak  9	10p11.21	chr10:34059131-35328087(probes 921199:921939)  	chr10:34597962-35128523(probes 921610:921920)  	chr10:34865759-34867204(probes 921766:921767)  	0.18599	    0.18599		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	1	1	
Deletion Peak 10	10q23.31	chr10:1-135534747(probes 897853:978758)         	chr10:89577212-89611620(probes 950033:950053)  	chr10:89586710-89598693(probes 950044:950045)  	0.24157	    0.23305		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	1	0	1	0	1	0	1	1	0	1	0	1	0	1	0	0	
Deletion Peak 11	13q14.2 	chr13:34386735-76123297(probes 1139224:1162470)	chr13:48984816-48992809(probes 1148794:1148804)	chr13:48936047-48997006(probes 1148737:1148808)	0.18599	    0.18599		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	1	0	0	0	0	0	0	0	1	1	1	1	0	1	1	1	
Deletion Peak 12	15q22.2 	chr15:1-102531392(probes 1236173:1280723)     	chr15:60777752-61525618(probes 1256439:1257127)	chr15:61202178-61202878(probes 1256784:1256785)	0.24159	    0.23305		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	
Deletion Peak 13	16q23.1 	chr16:78016120-79627770(probes 1313903:1315314)	chr16:78129058-79247026(probes 1313950:1314962)	chr16:78583258-78586506(probes 1314457:1314458)	0.20631	    0.19837		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	1	0	0	1	0	1	0	0	0	1	0	0	0	1	
Deletion Peak 14	17q24.3 	chr17:70116519-71163787(probes 1353872:1354716)	chr17:70583958-70640081(probes 1354239:1354274)	chr17:70609867-70615446(probes 1354257:1354258)	0.18599	    0.18599		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	
Deletion Peak 15	19q13.31	chr19:24008375-46149617(probes 1410170:1419989)	chr19:42775593-45042764(probes 1418661:1419557)	chr19:42770558-45098590(probes 1418659:1419601)	0.18599	    0.18599		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	1	1	1	1	
Deletion Peak 16	Xp11.3  	chrX:44702452-45008304(probes 1518695:1518817)  	chrX:44729401-44977416(probes 1518705:1518804)  	chrX:44837463-44850232(probes 1518755:1518756)  	0.11429	    0.11429		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	0	1	0	0	0	1	1	0	1	0	0	0	1	1	0	0	
Amplification Peak  1 - CN values	1q42.3  	chr1:200527575-249250621(probes 98744:129195) 	chr1:235125867-235523501(probes 121316:121419)	chr1:235125867-235527646(probes 121316:121422)	0.24466	   0.24466		Actual Copy Change Given	0.045453	0.51059	0.26621	0.027778	0.35141	0.43022	0	0.00356	0.53186	0.046559	0	0.089272	3.6569	1.3792	0.0044763	-0.38817	0.0066653	0.036935	0.45647	1.4152	
Amplification Peak  2 - CN values	2p15    	chr2:55425531-68349182(probes 161455:169012)    	chr2:63136228-63156545(probes 165798:165806)    	chr2:63136228-63161296(probes 165798:165809)    	0.24466	   0.24466		Actual Copy Change Given	-0.036216	0.018663	-0.096537	0.015308	-0.38967	-0.14232	0.023706	0.0037465	0.22428	2.1365	0.37127	0.16145	0.34226	1.3769	0.0041984	1.3601	0.2456	0.24373	0.30532	-0.023017	
Amplification Peak  3 - CN values	3q28    	chr3:140610629-198022430(probes 338081:366978)	chr3:189298765-189749582(probes 363121:363438)	chr3:183116782-191097564(probes 359658:364309)	0.11848	   0.11848		Actual Copy Change Given	0.86235	0.68775	0.12444	1.0934	0.39588	0.37331	-0.064556	1.1685	1.2994	-0.02562	0.47814	0.096538	1.4486	0.44613	0.54605	0.42939	0.20076	2.0499	0.54236	1.486	
Amplification Peak  4 - CN values	6p12.3  	chr6:41604078-62236966(probes 595029:604246)    	chr6:50465105-50501725(probes 600002:600018)    	chr6:50465105-50506183(probes 600002:600021)    	0.24466	   0.24466		Actual Copy Change Given	-0.31377	-0.04633	0.032398	-0.0016629	0.054879	0	-0.18174	0.15823	-0.03245	0	-0.47315	0.07815	0.31851	0.46178	-0.45915	-0.40361	-0.0011087	3.6569	1.0207	0.7512	
Amplification Peak  5 - CN values	7p11.2  	chr7:54942676-55793009(probes 699166:699870)    	chr7:55221656-55507579(probes 699509:699714)    	chr7:54944082-55509820(probes 699167:699717)    	0.11848	   0.11848		Actual Copy Change Given	0.045178	0.36949	0.94299	-0.005814	-0.37814	0.41195	0.22669	0.41563	0.28248	2.2053	0.4447	0.058224	0.27726	-0.6194	0.0173	0.38961	-0.010094	0.39712	-0.049114	3.6569	
Amplification Peak  6 - CN values	7q31.1  	chr7:77734989-110704701(probes 705868:723202)  	chr7:108283607-109069161(probes 721816:722287)	chr7:101753990-109072928(probes 718241:722290)	0.11395	   0.11395		Actual Copy Change Given	0.053521	1.2825	-0.14839	-0.005814	0.41769	3.3229	0.57202	0.40794	0.28248	0.76351	0.85691	0.058224	0.27726	0.9302	0.01283	1.2045	0.56205	-0.43398	0.62855	0.35865	
Amplification Peak  7 - CN values	8q24.21 	chr8:124192181-133156466(probes 816704:822832)	chr8:128517808-128545382(probes 819657:819669)	chr8:113532726-142201391(probes 810119:829274)	0.0071269	 0.0071269		Actual Copy Change Given	0.60611	1.0609	0.47611	0.18313	0.34836	0.63463	3.4748	1.4733	0.21637	0.67474	2.0244	-0.017254	0.79975	1.9386	0.44465	1.1464	1.0853	1.2112	0.9202	2.6511	
Amplification Peak  8 - CN values	10p11.21	chr10:35335459-35736943(probes 921948:922077)  	chr10:35338674-35621131(probes 921949:922024)  	chr10:35166628-35745220(probes 921940:922079)  	0.1082	    0.1082		Actual Copy Change Given	-0.32774	0.029747	-0.188	-0.005261	0.040544	0.001803	0.58256	-0.01037	3.6569	0.38296	-0.47928	0.097688	0.024127	0.84962	-0.0053642	-0.41344	3.2554	1.0884	0.22602	-0.41304	
Amplification Peak  9 - CN values	11p13   	chr11:34794025-35756636(probes 1000610:1001509)	chr11:35001099-35671706(probes 1000839:1001474)	chr11:34435552-37851494(probes 1000400:1002448)	0.038401	  0.043857		Actual Copy Change Given	0.048262	0.019643	-0.14222	0	-0.39758	0.040044	-0.10105	-0.020687	-0.22133	0.57469	-0.051524	0.27609	0.14637	-0.099736	-0.44736	-0.40926	3.6569	-0.19675	1.214	3.6569	
Amplification Peak 10 - CN values	11q13.3 	chr11:69523550-70248899(probes 1015267:1015631)	chr11:69940436-70248733(probes 1015471:1015630)	chr11:68008754-75309570(probes 1014473:1018273)	3.7199e-16	 3.865e-16		Actual Copy Change Given	3.6569	0.019643	3.6569	2.1881	0.0035432	2.583	-0.10105	-0.020687	3.6569	0.98059	0.39605	0.27609	1.6385	-0.12797	3.4571	-0.0099565	-0.051451	3.6569	0.1677	3.6569	
Amplification Peak 11 - CN values	12p13.33	chr12:1-2591028(probes 1056049:1056726)           	chr12:1-1861979(probes 1056049:1056252)           	chr12:1-1866203(probes 1056049:1056255)           	0.2172	    0.2172		Actual Copy Change Given	-0.32484	1.1645	0.044266	0.20213	1.1021	0.040751	-0.0020784	-0.20871	0.71227	0.031295	0.40587	3.6569	0.53678	0.43648	0.00062872	1.3922	0.11469	0.52818	0.51903	0.69123	
Amplification Peak 12 - CN values	14q21.3 	chr14:48730510-55343878(probes 1201100:1205242)	chr14:50276029-50616877(probes 1201864:1202054)	chr14:50276029-50628247(probes 1201864:1202057)	0.23096	   0.23096		Actual Copy Change Given	0.046417	-0.43659	0.37016	0.20523	0.035176	0.05637	0.18874	0.39413	-0.11926	1.3104	1.3195	-0.47976	0.17091	2.8878	0.016461	0.79258	0	0	0.168	0.75235	
Amplification Peak 13 - CN values	18p11.31	chr18:1-3702370(probes 1358541:1359962)           	chr18:3307535-3701840(probes 1359721:1359961)    	chr18:3307535-3704822(probes 1359721:1359964)    	0.24466	   0.24466		Actual Copy Change Given	-0.16001	0.041175	-0.22554	0.0087528	-0.39913	-0.089552	0.20687	-0.47818	-0.16879	-0.44084	0.39256	0.37397	-0.26829	0.81181	-0.44972	0.44172	0.38056	-0.049559	1.1759	3.6569	
Amplification Peak 14 - CN values	Xp21.1  	chrX:36176963-36179980(probes 1514707:1514713)  	chrX:36177025-36178123(probes 1514708:1514712)  	chrX:36168402-37496282(probes 1514699:1515252)  	0.058564	  0.058564		Actual Copy Change Given	-0.14451	-0.55547	-0.40608	-0.39004	-0.0639	0.022304	0.013401	0.11404	0.050108	-0.29296	0.93479	3.6569	-0.64684	3.6569	-0.082767	0.028341	-0.48008	-0.52444	0.30724	0.15237	
Deletion Peak  1 - CN values	2q22.1  	chr2:139655617-143637838(probes 201410:203840)	chr2:140976294-142894275(probes 202132:203403)	chr2:141755732-142085630(probes 202586:202794)	0.023373	   0.023373		Actual Copy Change Given	-0.99318	1.0604	-0.40597	0.015308	-0.40931	-0.54007	-0.3617	-0.0067813	-0.73134	0.3512	0.31507	0.01422	0.33341	-0.077345	-0.0019047	-0.016154	0.2456	0.15606	0	-0.023017	
Deletion Peak  2 - CN values	3p14.2  	chr3:59034763-61547330(probes 293466:294361)    	chr3:59702822-61238217(probes 293974:294175)    	chr3:61116605-61119922(probes 294075:294076)    	0.023373	   0.023373		Actual Copy Change Given	-0.70926	-0.45125	-0.4366	-0.21379	-0.40589	-0.17474	-0.064556	-0.13393	-0.30534	-0.43173	-0.48496	-0.48925	-0.42765	-0.055364	-0.45112	-0.41871	-0.37358	0.35904	-0.9169	-0.0050353	
Deletion Peak  3 - CN values	3q11.1  	chr3:74568944-93778057(probes 303801:311502)    	chr3:90485637-93778057(probes 311490:311502)    	chr3:77727591-93740691(probes 305236:311493)    	0.058795	    0.13697		Actual Copy Change Given	0.84061	0.6618	0.12444	0.42284	0.3344	-0.17474	-0.064556	-0.13122	1.0521	-0.048748	0.45863	0.10512	0.52293	0.45207	0.62501	0.39297	0.22746	0.35953	0.54236	0.72747	
Deletion Peak  4 - CN values	4q21.23 	chr4:76433725-140490090(probes 408146:443731)  	chr4:86392938-86925462(probes 414155:414541)    	chr4:86648425-86650018(probes 414349:414350)    	0.18599	    0.18599		Actual Copy Change Given	-0.31552	-0.46259	-0.11419	0.20121	0.71087	-0.068663	-0.17454	-0.02384	0.17046	0.1595	-0.91976	-0.17474	-0.413	-0.058462	-0.0092316	-0.40771	-0.022469	-0.42931	-0.04275	-0.048786	
Deletion Peak  5 - CN values	5q11.2  	chr5:44806004-101636216(probes 495510:523101)  	chr5:58260298-59787985(probes 500864:501808)    	chr5:58883803-58885578(probes 501337:501338)    	0.11429	    0.11429		Actual Copy Change Given	-0.70702	-0.4732	-0.42125	-0.039258	-0.41492	0.47856	0.14028	-0.46302	0.27963	0.16055	-0.44926	0.10089	-0.4256	-0.081871	-0.44829	0.020063	0.08739	-0.44566	-0.40996	-0.87645	
Deletion Peak  6 - CN values	6p25.3  	chr6:1-21668433(probes 570323:584800)            	chr6:1621405-2177023(probes 570837:571207)        	chr6:1827226-2148519(probes 570994:571191)        	0.18599	    0.18599		Actual Copy Change Given	-0.32996	-0.045228	0.032398	-0.0016629	0.054879	0	-0.18174	-0.77464	-0.16717	0	-0.47801	0.09159	-0.21849	1.3357	-0.95266	-0.011198	-0.38392	0.1619	0.25506	-0.9157	
Deletion Peak  7 - CN values	7q31.1  	chr7:109598162-159138663(probes 722561:748220)	chr7:110725672-110766749(probes 723222:723249)	chr7:110742455-111356845(probes 723233:723261)	0.16881	    0.16881		Actual Copy Change Given	0.053521	1.2825	-0.14839	-0.005814	-1.2929	-0.18865	-0.18043	0.40361	0.28248	-0.79252	0.85691	0.058224	0.27726	0.9302	-0.45037	1.2045	0.56205	-0.43398	0.72899	0.35865	
Deletion Peak  8 - CN values	9p21.3  	chr9:21865498-22448737(probes 843239:843603)    	chr9:21959052-21977193(probes 843290:843291)    	chr9:21410163-23971908(probes 842962:844614)    	2.6068e-14	 2.6068e-14		Actual Copy Change Given	-0.68524	0.016705	-0.67584	-0.635	-1.0085	-0.1827	-0.18433	-0.011473	-0.87767	-0.47067	-1.2929	-0.47427	-1.2132	-0.62998	-0.90713	-1.1814	-0.74011	-0.49642	-1.053	2.1261	
Deletion Peak  9 - CN values	10p11.21	chr10:34059131-35328087(probes 921199:921939)  	chr10:34597962-35128523(probes 921610:921920)  	chr10:34865759-34867204(probes 921766:921767)  	0.18599	    0.18599		Actual Copy Change Given	-0.32774	0.029747	-0.188	-0.005261	0.040544	0.001803	0.58256	-0.01037	-0.14005	0.38296	-0.47928	0.097688	0.024127	1.8456	-0.0053642	-0.41344	3.6569	1.0884	-0.11669	-0.41304	
Deletion Peak 10 - CN values	10q23.31	chr10:1-135534747(probes 897853:978758)         	chr10:89577212-89611620(probes 950033:950053)  	chr10:89586710-89598693(probes 950044:950045)  	0.24157	    0.23305		Actual Copy Change Given	-0.32774	-0.09721	-0.188	-0.005261	-0.39679	0.001803	-0.19174	0.0038854	-0.11822	-0.022195	-0.31359	-0.14129	0.024127	-0.62551	-0.0053642	-1.2829	-0.0029091	-0.52194	0.22602	0.35116	
Deletion Peak 11 - CN values	13q14.2 	chr13:34386735-76123297(probes 1139224:1162470)	chr13:48984816-48992809(probes 1148794:1148804)	chr13:48936047-48997006(probes 1148737:1148808)	0.18599	    0.18599		Actual Copy Change Given	0.050819	-0.42598	-0.148	-0.40473	-0.83304	-0.014366	0.21637	0.79549	0.047836	1.6118	-0.053669	0.10599	-0.43084	-1.1992	-0.40372	-0.41121	-0.0083005	-0.45394	-0.19829	-1.2929	
Deletion Peak 12 - CN values	15q22.2 	chr15:1-102531392(probes 1236173:1280723)     	chr15:60777752-61525618(probes 1256439:1257127)	chr15:61202178-61202878(probes 1256784:1256785)	0.24159	    0.23305		Actual Copy Change Given	0.018108	-0.32751	-0.014802	0.0036076	-0.23171	-0.17992	0.2058	-0.04428	-0.069632	0.5062	-0.023076	-0.1866	0	0.41295	0.010181	0.0030522	0.097397	0.26442	-0.43445	-0.016342	
Deletion Peak 13 - CN values	16q23.1 	chr16:78016120-79627770(probes 1313903:1315314)	chr16:78129058-79247026(probes 1313950:1314962)	chr16:78583258-78586506(probes 1314457:1314458)	0.20631	    0.19837		Actual Copy Change Given	0.0065262	-0.5038	0.36327	-0.0013858	0.024202	-0.19737	-0.63699	-0.012523	0.19178	-0.21268	0.42059	-0.48628	0.0026605	-0.087579	0.0010058	-0.34698	-0.014778	0.26828	0.58254	-0.85752	
Deletion Peak 14 - CN values	17q24.3 	chr17:70116519-71163787(probes 1353872:1354716)	chr17:70583958-70640081(probes 1354239:1354274)	chr17:70609867-70615446(probes 1354257:1354258)	0.18599	    0.18599		Actual Copy Change Given	0.0020574	0.45275	0.043982	-0.058596	-0.0049343	0.02806	0	0.46622	0.30473	0.63408	-0.01167	0.066229	-0.017529	-1.2929	-0.0052259	-1.2929	-0.0018014	0.28675	0.54002	0.29734	
Deletion Peak 15 - CN values	19q13.31	chr19:24008375-46149617(probes 1410170:1419989)	chr19:42775593-45042764(probes 1418661:1419557)	chr19:42770558-45098590(probes 1418659:1419601)	0.18599	    0.18599		Actual Copy Change Given	0	0.37907	-0.065007	-0.023732	-0.16783	-0.020865	0.13613	-0.28396	0.074984	0.029888	-1.2929	0.034818	0.24653	-0.15822	-0.094294	-0.049965	-0.33491	-0.12875	-0.11748	-0.19642	
Deletion Peak 16 - CN values	Xp11.3  	chrX:44702452-45008304(probes 1518695:1518817)  	chrX:44729401-44977416(probes 1518705:1518804)  	chrX:44837463-44850232(probes 1518755:1518756)  	0.11429	    0.11429		Actual Copy Change Given	-0.060883	-0.55547	-0.40608	-0.39004	-0.0639	-0.39608	0.013401	0.11404	0.050108	-0.29296	-0.23526	1.4075	-0.64684	3.6569	-0.082767	0.028341	-0.48008	-0.52444	0.30724	0.15237	
