
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/398039/GBM-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/GBM-TP/3148415/1.GDAC_mergedClustering.Finished/GBM-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=GBM-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=GBM-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=584, in cluster file=284, common to both=284
[1] 110 284
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              32              252 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              32              252 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
             6            278 
  BRAF MUTATED BRAF WILD-TYPE 
             6            278 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            74            210 
  EGFR MUTATED EGFR WILD-TYPE 
            74            210 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
            14            270 
  IDH1 MUTATED IDH1 WILD-TYPE 
            14            270 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            87            197 
  PTEN MUTATED PTEN WILD-TYPE 
            87            197 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            79            205 
  TP53 MUTATED TP53 WILD-TYPE 
            79            205 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              30              254 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              30              254 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           24           260 
  RB1 MUTATED RB1 WILD-TYPE 
           24           260 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           29           255 
  NF1 MUTATED NF1 WILD-TYPE 
           29           255 
[1] "SPTA1 MUTATION ANALYSIS"
[1] 3
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             26             258 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             26             258 
[1] "KRTAP4-11 MUTATION ANALYSIS"
[1] 3
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
                  9                 275 
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
                  9                 275 
[1] "GABRA6 MUTATION ANALYSIS"
[1] 3
  GABRA6 MUTATED GABRA6 WILD-TYPE 
              11              273 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
              11              273 
[1] "KEL MUTATION ANALYSIS"
[1] 3
  KEL MUTATED KEL WILD-TYPE 
           15           269 
  KEL MUTATED KEL WILD-TYPE 
           15           269 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             11             273 
  CDH18 MUTATED CDH18 WILD-TYPE 
             11             273 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
             6            278 
  PRB2 MUTATED PRB2 WILD-TYPE 
             6            278 
[1] "RPL5 MUTATION ANALYSIS"
[1] 3
  RPL5 MUTATED RPL5 WILD-TYPE 
             7            277 
  RPL5 MUTATED RPL5 WILD-TYPE 
             7            277 
[1] "SEMA3C MUTATION ANALYSIS"
[1] 3
  SEMA3C MUTATED SEMA3C WILD-TYPE 
              11              273 
  SEMA3C MUTATED SEMA3C WILD-TYPE 
              11              273 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             276 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             276 
[1] "ZNF844 MUTATION ANALYSIS"
[1] 3
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               6              278 
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               6              278 
[1] "OR8K3 MUTATION ANALYSIS"
[1] 3
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             277 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             277 
[1] "OR5AR1 MUTATION ANALYSIS"
[1] 3
  OR5AR1 MUTATED OR5AR1 WILD-TYPE 
               7              277 
  OR5AR1 MUTATED OR5AR1 WILD-TYPE 
               7              277 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             272 
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             272 
[1] "SEMG1 MUTATION ANALYSIS"
[1] 3
  SEMG1 MUTATED SEMG1 WILD-TYPE 
              8             276 
  SEMG1 MUTATED SEMG1 WILD-TYPE 
              8             276 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             278 
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             278 
[1] "PDGFRA MUTATION ANALYSIS"
[1] 3
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              11              273 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              11              273 
[1] "ADAM29 MUTATION ANALYSIS"
[1] 3
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               9              275 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               9              275 
[1] "SULT1B1 MUTATION ANALYSIS"
[1] 3
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                6               278 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                6               278 
[1] "ABCC9 MUTATION ANALYSIS"
[1] 3
  ABCC9 MUTATED ABCC9 WILD-TYPE 
             11             273 
  ABCC9 MUTATED ABCC9 WILD-TYPE 
             11             273 
[1] "NLRP5 MUTATION ANALYSIS"
[1] 3
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             12             272 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             12             272 
[1] "LZTR1 MUTATION ANALYSIS"
[1] 3
  LZTR1 MUTATED LZTR1 WILD-TYPE 
             10             274 
  LZTR1 MUTATED LZTR1 WILD-TYPE 
             10             274 
[1] "CALCR MUTATION ANALYSIS"
[1] 3
  CALCR MUTATED CALCR WILD-TYPE 
              8             276 
  CALCR MUTATED CALCR WILD-TYPE 
              8             276 
[1] "QKI MUTATION ANALYSIS"
[1] 3
  QKI MUTATED QKI WILD-TYPE 
            5           279 
  QKI MUTATED QKI WILD-TYPE 
            5           279 
[1] "ZPBP MUTATION ANALYSIS"
[1] 3
  ZPBP MUTATED ZPBP WILD-TYPE 
             5            279 
  ZPBP MUTATED ZPBP WILD-TYPE 
             5            279 
[1] "PSPH MUTATION ANALYSIS"
[1] 3
  PSPH MUTATED PSPH WILD-TYPE 
             5            279 
  PSPH MUTATED PSPH WILD-TYPE 
             5            279 
[1] "UGT2A3 MUTATION ANALYSIS"
[1] 3
  UGT2A3 MUTATED UGT2A3 WILD-TYPE 
               6              278 
  UGT2A3 MUTATED UGT2A3 WILD-TYPE 
               6              278 
[1] "WNT2 MUTATION ANALYSIS"
[1] 3
  WNT2 MUTATED WNT2 WILD-TYPE 
             5            279 
  WNT2 MUTATED WNT2 WILD-TYPE 
             5            279 
[1] "OR5D18 MUTATION ANALYSIS"
[1] 3
  OR5D18 MUTATED OR5D18 WILD-TYPE 
               6              278 
  OR5D18 MUTATED OR5D18 WILD-TYPE 
               6              278 
[1] "OR5W2 MUTATION ANALYSIS"
[1] 3
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              5             279 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              5             279 
[1] "ABCB1 MUTATION ANALYSIS"
[1] 3
  ABCB1 MUTATED ABCB1 WILD-TYPE 
             10             274 
  ABCB1 MUTATED ABCB1 WILD-TYPE 
             10             274 
[1] "COL1A2 MUTATION ANALYSIS"
[1] 3
  COL1A2 MUTATED COL1A2 WILD-TYPE 
              11              273 
  COL1A2 MUTATED COL1A2 WILD-TYPE 
              11              273 
[1] "ATRX MUTATION ANALYSIS"
[1] 3
  ATRX MUTATED ATRX WILD-TYPE 
            16            268 
  ATRX MUTATED ATRX WILD-TYPE 
            16            268 
[1] "C1ORF150 MUTATION ANALYSIS"
[1] 3
  C1ORF150 MUTATED C1ORF150 WILD-TYPE 
                 3                281 
  C1ORF150 MUTATED C1ORF150 WILD-TYPE 
                 3                281 
[1] "LRRC55 MUTATION ANALYSIS"
[1] 3
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               6              278 
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               6              278 
[1] "DCAF12L2 MUTATION ANALYSIS"
[1] 3
  DCAF12L2 MUTATED DCAF12L2 WILD-TYPE 
                 8                276 
  DCAF12L2 MUTATED DCAF12L2 WILD-TYPE 
                 8                276 
[1] "LRFN5 MUTATION ANALYSIS"
[1] 3
  LRFN5 MUTATED LRFN5 WILD-TYPE 
              7             277 
  LRFN5 MUTATED LRFN5 WILD-TYPE 
              7             277 
[1] "LUM MUTATION ANALYSIS"
[1] 3
  LUM MUTATED LUM WILD-TYPE 
            5           279 
  LUM MUTATED LUM WILD-TYPE 
            5           279 
[1] "MMP13 MUTATION ANALYSIS"
[1] 3
  MMP13 MUTATED MMP13 WILD-TYPE 
              6             278 
  MMP13 MUTATED MMP13 WILD-TYPE 
              6             278 
[1] "HEATR7B2 MUTATION ANALYSIS"
[1] 3
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                11                273 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                11                273 
[1] "UGT2B28 MUTATION ANALYSIS"
[1] 3
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
                6               278 
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
                6               278 
[1] "OR5D13 MUTATION ANALYSIS"
[1] 3
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               5              279 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               5              279 
[1] "ZNF99 MUTATION ANALYSIS"
[1] 3
  ZNF99 MUTATED ZNF99 WILD-TYPE 
              6             278 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
              6             278 
[1] "SLC5A7 MUTATION ANALYSIS"
[1] 3
  SLC5A7 MUTATED SLC5A7 WILD-TYPE 
               7              277 
  SLC5A7 MUTATED SLC5A7 WILD-TYPE 
               7              277 
[1] "SEMA3E MUTATION ANALYSIS"
[1] 3
  SEMA3E MUTATED SEMA3E WILD-TYPE 
               8              276 
  SEMA3E MUTATED SEMA3E WILD-TYPE 
               8              276 
[1] "TCHH MUTATION ANALYSIS"
[1] 3
  TCHH MUTATED TCHH WILD-TYPE 
            16            268 
  TCHH MUTATED TCHH WILD-TYPE 
            16            268 
[1] "SLC26A3 MUTATION ANALYSIS"
[1] 3
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
                7               277 
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
                7               277 
[1] "GABRB2 MUTATION ANALYSIS"
[1] 3
  GABRB2 MUTATED GABRB2 WILD-TYPE 
               6              278 
  GABRB2 MUTATED GABRB2 WILD-TYPE 
               6              278 
[1] "CFHR4 MUTATION ANALYSIS"
[1] 3
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              5             279 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              5             279 
[1] "IL18RAP MUTATION ANALYSIS"
[1] 3
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                6               278 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                6               278 
[1] "OGDH MUTATION ANALYSIS"
[1] 3
  OGDH MUTATED OGDH WILD-TYPE 
             3            281 
  OGDH MUTATED OGDH WILD-TYPE 
             3            281 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                9               275 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                9               275 
[1] "SPRYD5 MUTATION ANALYSIS"
[1] 3
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               6              278 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               6              278 
[1] "TGFA MUTATION ANALYSIS"
[1] 3
  TGFA MUTATED TGFA WILD-TYPE 
             4            280 
  TGFA MUTATED TGFA WILD-TYPE 
             4            280 
[1] "OR5P2 MUTATION ANALYSIS"
[1] 3
  OR5P2 MUTATED OR5P2 WILD-TYPE 
              4             280 
  OR5P2 MUTATED OR5P2 WILD-TYPE 
              4             280 
[1] "UGT2B4 MUTATION ANALYSIS"
[1] 3
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
               5              279 
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
               5              279 
[1] "FOXR2 MUTATION ANALYSIS"
[1] 3
  FOXR2 MUTATED FOXR2 WILD-TYPE 
              5             279 
  FOXR2 MUTATED FOXR2 WILD-TYPE 
              5             279 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             6            278 
  PSG8 MUTATED PSG8 WILD-TYPE 
             6            278 
[1] "CNTNAP2 MUTATION ANALYSIS"
[1] 3
  CNTNAP2 MUTATED CNTNAP2 WILD-TYPE 
               13               271 
  CNTNAP2 MUTATED CNTNAP2 WILD-TYPE 
               13               271 
[1] "PIK3C2G MUTATION ANALYSIS"
[1] 3
  PIK3C2G MUTATED PIK3C2G WILD-TYPE 
                9               275 
  PIK3C2G MUTATED PIK3C2G WILD-TYPE 
                9               275 
[1] "SCN9A MUTATION ANALYSIS"
[1] 3
  SCN9A MUTATED SCN9A WILD-TYPE 
             11             273 
  SCN9A MUTATED SCN9A WILD-TYPE 
             11             273 
[1] "GABRA1 MUTATION ANALYSIS"
[1] 3
  GABRA1 MUTATED GABRA1 WILD-TYPE 
               6              278 
  GABRA1 MUTATED GABRA1 WILD-TYPE 
               6              278 
[1] "DYNC1I1 MUTATION ANALYSIS"
[1] 3
  DYNC1I1 MUTATED DYNC1I1 WILD-TYPE 
                7               277 
  DYNC1I1 MUTATED DYNC1I1 WILD-TYPE 
                7               277 
[1] "PODXL MUTATION ANALYSIS"
[1] 3
  PODXL MUTATED PODXL WILD-TYPE 
              3             281 
  PODXL MUTATED PODXL WILD-TYPE 
              3             281 
[1] "HCN1 MUTATION ANALYSIS"
[1] 3
  HCN1 MUTATED HCN1 WILD-TYPE 
            11            273 
  HCN1 MUTATED HCN1 WILD-TYPE 
            11            273 
[1] "POTEF MUTATION ANALYSIS"
[1] 3
  POTEF MUTATED POTEF WILD-TYPE 
              5             279 
  POTEF MUTATED POTEF WILD-TYPE 
              5             279 
[1] "CXORF22 MUTATION ANALYSIS"
[1] 3
  CXORF22 MUTATED CXORF22 WILD-TYPE 
                8               276 
  CXORF22 MUTATED CXORF22 WILD-TYPE 
                8               276 
[1] "AFM MUTATION ANALYSIS"
[1] 3
  AFM MUTATED AFM WILD-TYPE 
            6           278 
  AFM MUTATED AFM WILD-TYPE 
            6           278 
[1] "KRTAP20-2 MUTATION ANALYSIS"
[1] 3
  KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE 
                  3                 281 
  KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE 
                  3                 281 
[1] "OTC MUTATION ANALYSIS"
[1] 3
  OTC MUTATED OTC WILD-TYPE 
            3           281 
  OTC MUTATED OTC WILD-TYPE 
            3           281 
[1] "TRAT1 MUTATION ANALYSIS"
[1] 3
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              4             280 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              4             280 
[1] "KLK6 MUTATION ANALYSIS"
[1] 3
  KLK6 MUTATED KLK6 WILD-TYPE 
             4            280 
  KLK6 MUTATED KLK6 WILD-TYPE 
             4            280 
[1] "OR4D5 MUTATION ANALYSIS"
[1] 3
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              4             280 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              4             280 
[1] "GPX5 MUTATION ANALYSIS"
[1] 3
  GPX5 MUTATED GPX5 WILD-TYPE 
             3            281 
  GPX5 MUTATED GPX5 WILD-TYPE 
             3            281 
[1] "KRTAP4-7 MUTATION ANALYSIS"
[1] 3
  KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE 
                 3                281 
  KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE 
                 3                281 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
             8            276 
  CDH9 MUTATED CDH9 WILD-TYPE 
             8            276 
[1] "CDHR3 MUTATION ANALYSIS"
[1] 3
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              3             281 
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              3             281 
[1] "OR4P4 MUTATION ANALYSIS"
[1] 3
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              4             280 
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              4             280 
[1] "OR52M1 MUTATION ANALYSIS"
[1] 3
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               4              280 
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               4              280 
[1] "KLF17 MUTATION ANALYSIS"
[1] 3
  KLF17 MUTATED KLF17 WILD-TYPE 
              5             279 
  KLF17 MUTATED KLF17 WILD-TYPE 
              5             279 
[1] "OR8J3 MUTATION ANALYSIS"
[1] 3
  OR8J3 MUTATED OR8J3 WILD-TYPE 
              4             280 
  OR8J3 MUTATED OR8J3 WILD-TYPE 
              4             280 
[1] "AP3S1 MUTATION ANALYSIS"
[1] 3
  AP3S1 MUTATED AP3S1 WILD-TYPE 
              3             281 
  AP3S1 MUTATED AP3S1 WILD-TYPE 
              3             281 
[1] "ST6GAL2 MUTATION ANALYSIS"
[1] 3
  ST6GAL2 MUTATED ST6GAL2 WILD-TYPE 
                6               278 
  ST6GAL2 MUTATED ST6GAL2 WILD-TYPE 
                6               278 
[1] "CD3EAP MUTATION ANALYSIS"
[1] 3
  CD3EAP MUTATED CD3EAP WILD-TYPE 
               3              281 
  CD3EAP MUTATED CD3EAP WILD-TYPE 
               3              281 
[1] "F9 MUTATION ANALYSIS"
[1] 3
  F9 MUTATED F9 WILD-TYPE 
           4          280 
  F9 MUTATED F9 WILD-TYPE 
           4          280 
[1] "DPP10 MUTATION ANALYSIS"
[1] 3
  DPP10 MUTATED DPP10 WILD-TYPE 
              7             277 
  DPP10 MUTATED DPP10 WILD-TYPE 
              7             277 
[1] "TCN1 MUTATION ANALYSIS"
[1] 3
  TCN1 MUTATED TCN1 WILD-TYPE 
             4            280 
  TCN1 MUTATED TCN1 WILD-TYPE 
             4            280 
[1] "TRPV6 MUTATION ANALYSIS"
[1] 3
  TRPV6 MUTATED TRPV6 WILD-TYPE 
              7             277 
  TRPV6 MUTATED TRPV6 WILD-TYPE 
              7             277 
[1] "PAN3 MUTATION ANALYSIS"
[1] 3
  PAN3 MUTATED PAN3 WILD-TYPE 
             6            278 
  PAN3 MUTATED PAN3 WILD-TYPE 
             6            278 
[1] "CDKN2C MUTATION ANALYSIS"
[1] 3
  CDKN2C MUTATED CDKN2C WILD-TYPE 
               3              281 
  CDKN2C MUTATED CDKN2C WILD-TYPE 
               3              281 
[1] "AZGP1 MUTATION ANALYSIS"
[1] 3
  AZGP1 MUTATED AZGP1 WILD-TYPE 
              5             279 
  AZGP1 MUTATED AZGP1 WILD-TYPE 
              5             279 
[1] "DRD5 MUTATION ANALYSIS"
[1] 3
  DRD5 MUTATED DRD5 WILD-TYPE 
             7            277 
  DRD5 MUTATED DRD5 WILD-TYPE 
             7            277 
[1] "FGA MUTATION ANALYSIS"
[1] 3
  FGA MUTATED FGA WILD-TYPE 
            6           278 
  FGA MUTATED FGA WILD-TYPE 
            6           278 
[1] "FGG MUTATION ANALYSIS"
[1] 3
  FGG MUTATED FGG WILD-TYPE 
            5           279 
  FGG MUTATED FGG WILD-TYPE 
            5           279 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               4              280 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               4              280 
[1] "PCMTD1 MUTATION ANALYSIS"
[1] 3
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               3              281 
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               3              281 
[1] "PROKR2 MUTATION ANALYSIS"
[1] 3
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               6              278 
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               6              278 
[1] "SHB MUTATION ANALYSIS"
[1] 3
  SHB MUTATED SHB WILD-TYPE 
            3           281 
  SHB MUTATED SHB WILD-TYPE 
            3           281 
[1] "CYP3A5 MUTATION ANALYSIS"
[1] 3
  CYP3A5 MUTATED CYP3A5 WILD-TYPE 
               5              279 
  CYP3A5 MUTATED CYP3A5 WILD-TYPE 
               5              279 
[1] "FRMD7 MUTATION ANALYSIS"
[1] 3
  FRMD7 MUTATED FRMD7 WILD-TYPE 
              6             278 
  FRMD7 MUTATED FRMD7 WILD-TYPE 
              6             278 
[1] "KCNB2 MUTATION ANALYSIS"
[1] 3
  KCNB2 MUTATED KCNB2 WILD-TYPE 
              6             278 
  KCNB2 MUTATED KCNB2 WILD-TYPE 
              6             278 
[1] "KDR MUTATION ANALYSIS"
[1] 3
  KDR MUTATED KDR WILD-TYPE 
            8           276 
  KDR MUTATED KDR WILD-TYPE 
            8           276 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"

Input Data has 10 rows and 284 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 284 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = PIK3R1 MUTATION ANALYSIS
D1V1, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              7               69
  CLUS_2              7               78
  CLUS_3              8               72
D1V2, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             11               92
  CLUS_2              5               54
  CLUS_3              6               73
D1V3, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              6               51
  CLUS_2              8               64
  CLUS_3              1               29
  CLUS_4              2               42
D1V4, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              8               73
  CLUS_3              6               43
D1V5, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2             14               94
  CLUS_3             12               67
D1V6, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              7               30
  CLUS_2              3               17
  CLUS_3              5               20
  CLUS_4              3               23
D1V7, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              7               34
  CLUS_2              6               32
  CLUS_3              4               27
  CLUS_4              5               28
D1V8, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              5               23
  CLUS_3             13               55
D1V9, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              5               39
  CLUS_2              6               56
  CLUS_3              1               34
D1V10, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              7               54
  CLUS_2              1               20
  CLUS_3              4               55

Clustering(2) Variable = BRAF MUTATION ANALYSIS
D2V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             74
  CLUS_2            0             85
  CLUS_3            2             78
D2V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3            100
  CLUS_2            0             59
  CLUS_3            1             78
D2V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             55
  CLUS_2            1             71
  CLUS_3            0             30
  CLUS_4            2             42
D2V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4             69
  CLUS_2            1             80
  CLUS_3            0             49
D2V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2            106
  CLUS_3            3             76
D2V6, multiclass
[1] "Remove cluster labels:" "BRAF MUTATED"          
clus
  BRAF MUTATED BRAF WILD-TYPE 
             2            106 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-5408     TCGA-06-5410 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-12-5295     TCGA-12-5299 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1979     TCGA-32-1980 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-5222     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4929 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6280 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6286 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6660     TCGA-76-6661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
D2V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             40
  CLUS_2            1             37
  CLUS_3            0             31
  CLUS_4            1             32
D2V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             46
  CLUS_2            2             26
  CLUS_3            0             68
D2V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             43
  CLUS_2            2             60
  CLUS_3            0             35
D2V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             59
  CLUS_2            0             21
  CLUS_3            1             58

Clustering(3) Variable = EGFR MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           21             55
  CLUS_2           13             72
  CLUS_3           34             46
D3V2, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           32             71
  CLUS_2           21             38
  CLUS_3           15             64
D3V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           20             37
  CLUS_2           24             48
  CLUS_3            5             25
  CLUS_4           11             33
D3V4, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           22             51
  CLUS_2           28             53
  CLUS_3           10             39
D3V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           16             71
  CLUS_2           47             61
  CLUS_3            9             70
D3V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            5             32
  CLUS_2            6             14
  CLUS_3            9             16
  CLUS_4            1             25
D3V7, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           13             28
  CLUS_2            5             33
  CLUS_3           16             15
  CLUS_4            2             31
D3V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           24             23
  CLUS_2            6             22
  CLUS_3            6             62
D3V9, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            8             36
  CLUS_2           22             40
  CLUS_3           15             20
D3V10, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           22             39
  CLUS_2            8             13
  CLUS_3           15             44

Clustering(4) Variable = IDH1 MUTATION ANALYSIS
D4V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             76
  CLUS_2           13             72
  CLUS_3            0             80
D4V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            103
  CLUS_2            0             59
  CLUS_3           13             66
D4V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             57
  CLUS_2           10             62
  CLUS_3            0             30
  CLUS_4            0             44
D4V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             73
  CLUS_2            1             80
  CLUS_3            9             40
D4V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0            108
  CLUS_3           11             68
D4V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            0             20
  CLUS_3            0             25
  CLUS_4            5             21
D4V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             40
  CLUS_2            6             32
  CLUS_3            0             31
  CLUS_4            0             33
D4V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            0             28
  CLUS_3            7             61
D4V9, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            7             37
  CLUS_2            0             62
  CLUS_3            1             34
D4V10, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             61
  CLUS_2            0             21
  CLUS_3            8             51

Clustering(5) Variable = PTEN MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           27             49
  CLUS_2           27             58
  CLUS_3           21             59
D5V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           34             69
  CLUS_2           14             45
  CLUS_3           27             52
D5V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           21             36
  CLUS_2           14             58
  CLUS_3           12             18
  CLUS_4           17             27
D5V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           23             50
  CLUS_2           23             58
  CLUS_3           18             31
D5V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           30             57
  CLUS_2           30             78
  CLUS_3           25             54
D5V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           11             26
  CLUS_2            7             13
  CLUS_3            8             17
  CLUS_4            7             19
D5V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           12             29
  CLUS_2           14             24
  CLUS_3            6             25
  CLUS_4           12             21
D5V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           11             36
  CLUS_2            9             19
  CLUS_3           24             44
D5V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           10             34
  CLUS_2           23             39
  CLUS_3           12             23
D5V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           24             37
  CLUS_2            4             17
  CLUS_3           17             42

Clustering(6) Variable = TP53 MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           19             57
  CLUS_2           38             47
  CLUS_3           11             69
D6V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           26             77
  CLUS_2            8             51
  CLUS_3           34             45
D6V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7             50
  CLUS_2           33             39
  CLUS_3            7             23
  CLUS_4           15             29
D6V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           22             51
  CLUS_2           18             63
  CLUS_3           22             27
D6V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           34             53
  CLUS_2           16             92
  CLUS_3           28             51
D6V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7             30
  CLUS_2            3             17
  CLUS_3            3             22
  CLUS_4           13             13
D6V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           12             29
  CLUS_2           17             21
  CLUS_3            4             27
  CLUS_4           10             23
D6V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7             40
  CLUS_2            8             20
  CLUS_3           28             40
D6V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           23             21
  CLUS_2           13             49
  CLUS_3            8             27
D6V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           19             42
  CLUS_2            2             19
  CLUS_3           23             36

Clustering(7) Variable = PIK3CA MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8               68
  CLUS_2              8               77
  CLUS_3             11               69
D7V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             13               90
  CLUS_2              9               50
  CLUS_3              5               74
D7V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5               52
  CLUS_2              7               65
  CLUS_3              1               29
  CLUS_4              6               38
D7V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8               65
  CLUS_2              6               75
  CLUS_3              5               44
D7V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6               81
  CLUS_2             13               95
  CLUS_3              9               70
D7V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4               33
  CLUS_2              4               16
  CLUS_3              2               23
  CLUS_4              4               22
D7V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3               38
  CLUS_2              5               33
  CLUS_3              2               29
  CLUS_4              4               29
D7V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2               45
  CLUS_2              3               25
  CLUS_3              9               59
D7V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6               38
  CLUS_2              3               59
  CLUS_3              2               33
D7V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4               57
  CLUS_2              2               19
  CLUS_3              5               54

Clustering(8) Variable = RB1 MUTATION ANALYSIS
D8V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          12            64
  CLUS_2           3            82
  CLUS_3           3            77
D8V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          13            90
  CLUS_2           1            58
  CLUS_3           4            75
D8V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           6            51
  CLUS_2           2            70
  CLUS_3           2            28
  CLUS_4           7            37
D8V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           9            64
  CLUS_2           5            76
  CLUS_3           3            46
D8V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           8            79
  CLUS_2           5           103
  CLUS_3          11            68
D8V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           6            31
  CLUS_2           2            18
  CLUS_3           0            25
  CLUS_4           0            26
D8V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            38
  CLUS_2           1            37
  CLUS_3           2            29
  CLUS_4           4            29
D8V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2            45
  CLUS_2           2            26
  CLUS_3           6            62
D8V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            43
  CLUS_2           8            54
  CLUS_3           1            34
D8V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           8            53
  CLUS_2           0            21
  CLUS_3           2            57

Clustering(9) Variable = NF1 MUTATION ANALYSIS
D9V1, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          12            64
  CLUS_2           5            80
  CLUS_3           4            76
D9V2, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          14            89
  CLUS_2           4            55
  CLUS_3           3            76
D9V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           8            49
  CLUS_2           2            70
  CLUS_3           2            28
  CLUS_4           5            39
D9V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           7            66
  CLUS_2           8            73
  CLUS_3           2            47
D9V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           4            83
  CLUS_2           8           100
  CLUS_3          17            62
D9V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          10            27
  CLUS_2           2            18
  CLUS_3           0            25
  CLUS_4           1            25
D9V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           7            34
  CLUS_2           3            35
  CLUS_3           1            30
  CLUS_4           5            28
D9V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            45
  CLUS_2           5            23
  CLUS_3           9            59
D9V9, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            42
  CLUS_2           5            57
  CLUS_3           4            31
D9V10, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           5            56
  CLUS_2           2            19
  CLUS_3           4            55

Clustering(10) Variable = SPTA1 MUTATION ANALYSIS
D10V1, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             6              70
  CLUS_2            10              75
  CLUS_3             7              73
D10V2, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             5              98
  CLUS_2             5              54
  CLUS_3            13              66
D10V3, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             9              63
  CLUS_3             3              27
  CLUS_4             5              39
D10V4, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             7              66
  CLUS_2             9              72
  CLUS_3             4              45
D10V5, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1            11              76
  CLUS_2             7             101
  CLUS_3             7              72
D10V6, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             1              19
  CLUS_3             0              25
  CLUS_4             3              23
D10V7, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             5              36
  CLUS_2             5              33
  CLUS_3             1              30
  CLUS_4             3              30
D10V8, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             3              25
  CLUS_3             7              61
D10V9, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             8              36
  CLUS_2             7              55
  CLUS_3             0              35
D10V10, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             5              56
  CLUS_2             3              18
  CLUS_3             7              52

Clustering(11) Variable = KRTAP4-11 MUTATION ANALYSIS
D11V1, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 2                  74
  CLUS_2                 1                  84
  CLUS_3                 6                  74
D11V2, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 3                 100
  CLUS_2                 5                  54
  CLUS_3                 1                  78
D11V3, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 2                  55
  CLUS_2                 2                  70
  CLUS_3                 1                  29
  CLUS_4                 1                  43
D11V4, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 1                  72
  CLUS_2                 3                  78
  CLUS_3                 2                  47
D11V5, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 2                  85
  CLUS_2                 5                 103
  CLUS_3                 2                  77
D11V6, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 1                  36
  CLUS_2                 0                  20
  CLUS_3                 2                  23
  CLUS_4                 0                  26
D11V7, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 1                  40
  CLUS_2                 0                  38
  CLUS_3                 3                  28
  CLUS_4                 3                  30
D11V8, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 3                  44
  CLUS_2                 0                  28
  CLUS_3                 4                  64
D11V9, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 0                  44
  CLUS_2                 4                  58
  CLUS_3                 1                  34
D11V10, multiclass
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  CLUS_1                 3                  58
  CLUS_2                 2                  19
  CLUS_3                 0                  59

Clustering(12) Variable = GABRA6 MUTATION ANALYSIS
D12V1, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              2               83
  CLUS_3              6               74
D12V2, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              3              100
  CLUS_2              4               55
  CLUS_3              2               77
D12V3, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              3               69
  CLUS_3              1               29
  CLUS_4              0               44
D12V4, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              4               77
  CLUS_3              2               47
D12V5, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              5              103
  CLUS_3              1               78
D12V6, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               19
  CLUS_3              2               23
  CLUS_4              1               25
D12V7, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              0               41
  CLUS_2              3               35
  CLUS_3              2               29
  CLUS_4              2               31
D12V8, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               28
  CLUS_3              4               64
D12V9, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              4               58
  CLUS_3              3               32
D12V10, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              3               58
  CLUS_2              1               20
  CLUS_3              3               56

Clustering(13) Variable = KEL MUTATION ANALYSIS
D13V1, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           2            74
  CLUS_2           5            80
  CLUS_3           8            72
D13V2, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           7            96
  CLUS_2           5            54
  CLUS_3           3            76
D13V3, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           3            54
  CLUS_2           5            67
  CLUS_3           2            28
  CLUS_4           3            41
D13V4, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           5            68
  CLUS_2           5            76
  CLUS_3           3            46
D13V5, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           6            81
  CLUS_2           7           101
  CLUS_3           2            77
D13V6, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           1            36
  CLUS_2           0            20
  CLUS_3           3            22
  CLUS_4           3            23
D13V7, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           2            39
  CLUS_2           1            37
  CLUS_3           3            28
  CLUS_4           4            29
D13V8, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           4            43
  CLUS_2           2            26
  CLUS_3           4            64
D13V9, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           5            39
  CLUS_2           3            59
  CLUS_3           2            33
D13V10, multiclass
        clus
vv       KEL MUTATED KEL WILD-TYPE
  CLUS_1           4            57
  CLUS_2           1            20
  CLUS_3           5            54

Clustering(14) Variable = CDH18 MUTATION ANALYSIS
D14V1, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             7              69
  CLUS_2             1              84
  CLUS_3             2              78
D14V2, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             8              95
  CLUS_2             2              57
  CLUS_3             0              79
D14V3, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             5              52
  CLUS_2             1              71
  CLUS_3             0              30
  CLUS_4             3              41
D14V4, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             5              76
  CLUS_3             0              49
D14V5, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             5             103
  CLUS_3             2              77
D14V6, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              19
  CLUS_3             2              23
  CLUS_4             1              25
D14V7, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             0              38
  CLUS_3             1              30
  CLUS_4             1              32
D14V8, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              27
  CLUS_3             1              67
D14V9, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             4              58
  CLUS_3             0              35
D14V10, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             5              56
  CLUS_2             0              21
  CLUS_3             0              59

Clustering(15) Variable = PRB2 MUTATION ANALYSIS
D15V1, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             74
  CLUS_2            3             82
  CLUS_3            0             80
D15V2, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2            101
  CLUS_2            1             58
  CLUS_3            2             77
D15V3, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             56
  CLUS_2            1             71
  CLUS_3            2             28
  CLUS_4            1             43
D15V4, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             80
  CLUS_3            2             47
D15V5, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3            105
  CLUS_3            2             77
D15V6, multiclass
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             1            107 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5408 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-12-5295 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-5299     TCGA-12-5301     TCGA-14-0740     TCGA-14-0781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0862     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-15-1444     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1442 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2501     TCGA-28-2510     TCGA-28-5204     TCGA-28-5207 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5209     TCGA-28-5211     TCGA-28-5213 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5214     TCGA-28-5215     TCGA-28-5216     TCGA-28-5218 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5219     TCGA-28-5220     TCGA-28-6450     TCGA-32-1979 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-5222     TCGA-41-5651     TCGA-41-6646 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6282     TCGA-76-6283     TCGA-76-6285 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6660 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
D15V7, multiclass
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             2            141 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2570     TCGA-06-5408 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0692     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5301 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0862     TCGA-14-0871     TCGA-16-0846 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-1790     TCGA-19-2619     TCGA-19-2620 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2631     TCGA-19-4068     TCGA-19-5947 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5950     TCGA-19-5951     TCGA-19-5952     TCGA-19-5953 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-6173     TCGA-26-6174     TCGA-27-1830 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2501     TCGA-28-5208     TCGA-28-5214     TCGA-32-1970 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-1991     TCGA-32-4210 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-4211     TCGA-32-5222     TCGA-41-2573     TCGA-41-2575 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-5651     TCGA-41-6646     TCGA-74-6573     TCGA-74-6575 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4926 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-6192     TCGA-76-6193     TCGA-76-6282 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6283     TCGA-76-6285     TCGA-76-6656     TCGA-76-6657 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6660     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-81-5910 
"PRB2 WILD-TYPE" 
D15V8, multiclass
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             2            141 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2570     TCGA-06-5408 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0692     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5301 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0862     TCGA-14-0871     TCGA-16-0846 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-1790     TCGA-19-2619     TCGA-19-2620 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2631     TCGA-19-4068     TCGA-19-5947 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5950     TCGA-19-5951     TCGA-19-5952     TCGA-19-5953 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-6173     TCGA-26-6174     TCGA-27-1830 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2501     TCGA-28-5208     TCGA-28-5214     TCGA-32-1970 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-1991     TCGA-32-4210 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-4211     TCGA-32-5222     TCGA-41-2573     TCGA-41-2575 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-5651     TCGA-41-6646     TCGA-74-6573     TCGA-74-6575 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4926 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-6192     TCGA-76-6193     TCGA-76-6282 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6283     TCGA-76-6285     TCGA-76-6656     TCGA-76-6657 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6660     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-81-5910 
"PRB2 WILD-TYPE" 
D15V9, multiclass
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-02-2486     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0141     TCGA-06-0157     TCGA-06-0158     TCGA-06-0168 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0219 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0649     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0882     TCGA-06-1804     TCGA-06-2557 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2558     TCGA-06-2559     TCGA-06-2561     TCGA-06-2562 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2563     TCGA-06-2564     TCGA-06-2565     TCGA-06-2567 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2569     TCGA-06-2570     TCGA-06-5408     TCGA-06-5410 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-08-0386     TCGA-12-0616 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0821     TCGA-12-1597 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-3650     TCGA-12-3652     TCGA-12-3653     TCGA-12-5295 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-5299     TCGA-14-0781     TCGA-14-0787     TCGA-14-0789 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0817     TCGA-14-1825     TCGA-14-1829 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-2554     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-16-1045     TCGA-19-1390     TCGA-19-2619     TCGA-19-2620 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-5960 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-27-1830 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1834     TCGA-27-1835 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
D15V10, multiclass
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-02-2486     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0141     TCGA-06-0157     TCGA-06-0158     TCGA-06-0168 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0219 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0649     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0882     TCGA-06-1804     TCGA-06-2557 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2558     TCGA-06-2559     TCGA-06-2561     TCGA-06-2562 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2563     TCGA-06-2564     TCGA-06-2565     TCGA-06-2567 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2569     TCGA-06-2570     TCGA-06-5408     TCGA-06-5410 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-08-0386     TCGA-12-0616 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0821     TCGA-12-1597 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-3650     TCGA-12-3652     TCGA-12-3653     TCGA-12-5295 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-5299     TCGA-14-0781     TCGA-14-0787     TCGA-14-0789 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0817     TCGA-14-1825     TCGA-14-1829 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-2554     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-16-1045     TCGA-19-1390     TCGA-19-2619     TCGA-19-2620 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-5960 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-27-1830 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1834     TCGA-27-1835 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 

Clustering(16) Variable = RPL5 MUTATION ANALYSIS
D16V1, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            2             74
  CLUS_2            1             84
  CLUS_3            3             77
D16V2, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            4             99
  CLUS_2            2             57
  CLUS_3            0             79
D16V3, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            0             57
  CLUS_2            2             70
  CLUS_3            0             30
  CLUS_4            2             42
D16V4, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            2             79
  CLUS_3            0             49
D16V5, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            3            105
  CLUS_3            2             77
D16V6, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             19
  CLUS_3            0             25
  CLUS_4            1             25
D16V7, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            2             39
  CLUS_2            1             37
  CLUS_3            1             30
  CLUS_4            0             33
D16V8, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             27
  CLUS_3            1             67
D16V9, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             61
  CLUS_3            0             35
D16V10, multiclass
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  CLUS_1            2             59
  CLUS_2            0             21
  CLUS_3            1             58

Clustering(17) Variable = SEMA3C MUTATION ANALYSIS
D17V1, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              2               74
  CLUS_2              8               77
  CLUS_3              1               79
D17V2, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              4               99
  CLUS_2              1               58
  CLUS_3              6               73
D17V3, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              3               54
  CLUS_2              7               65
  CLUS_3              1               29
  CLUS_4              0               44
D17V4, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              2               71
  CLUS_2              5               76
  CLUS_3              4               45
D17V5, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              6               81
  CLUS_2              3              105
  CLUS_3              2               77
D17V6, multiclass
[1] "Remove cluster labels:" "SEMA3C MUTATED"        
clus
  SEMA3C MUTATED SEMA3C WILD-TYPE 
               1              107 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0740       TCGA-14-0781 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-14-0862       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-15-1444       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1442 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-28-2501       TCGA-28-2510       TCGA-28-5204       TCGA-28-5207 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5211       TCGA-28-5213 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-28-5214       TCGA-28-5215       TCGA-28-5216       TCGA-28-5218 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-28-5219       TCGA-28-5220       TCGA-28-6450       TCGA-32-1979 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-32-1980       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-76-4935       TCGA-76-6191       TCGA-76-6192       TCGA-76-6193 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-76-6280       TCGA-76-6282       TCGA-76-6283       TCGA-76-6285 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6660 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" "SEMA3C WILD-TYPE" 
D17V7, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              2               39
  CLUS_2              2               36
  CLUS_3              0               31
  CLUS_4              0               33
D17V8, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               27
  CLUS_3              1               67
D17V9, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              6               38
  CLUS_2              2               60
  CLUS_3              1               34
D17V10, multiclass
        clus
vv       SEMA3C MUTATED SEMA3C WILD-TYPE
  CLUS_1              3               58
  CLUS_2              2               19
  CLUS_3              4               55

Clustering(18) Variable = TPTE2 MUTATION ANALYSIS
D18V1, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              73
  CLUS_2             3              82
  CLUS_3             2              78
D18V2, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3             100
  CLUS_2             2              57
  CLUS_3             3              76
D18V3, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             1              71
  CLUS_3             1              29
  CLUS_4             3              41
D18V4, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             1              80
  CLUS_3             1              48
D18V5, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1             107
  CLUS_3             2              77
D18V6, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              20
  CLUS_3             0              25
  CLUS_4             2              24
D18V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             1              37
  CLUS_3             0              31
  CLUS_4             2              31
D18V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              27
  CLUS_3             3              65
D18V9, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             3              59
  CLUS_3             0              35
D18V10, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             0              21
  CLUS_3             3              56

Clustering(19) Variable = ZNF844 MUTATION ANALYSIS
D19V1, multiclass
        clus
vv       ZNF844 MUTATED ZNF844 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              2               83
  CLUS_3              3               77
D19V2, multiclass
        clus
vv       ZNF844 MUTATED ZNF844 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              2               57
  CLUS_3              2               77
D19V3, multiclass
        clus
vv       ZNF844 MUTATED ZNF844 WILD-TYPE
  CLUS_1              0               57
  CLUS_2              3               69
  CLUS_3              0               30
  CLUS_4              3               41
D19V4, multiclass
        clus
vv       ZNF844 MUTATED ZNF844 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              2               79
  CLUS_3              1               48
D19V5, multiclass
        clus
vv       ZNF844 MUTATED ZNF844 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              2              106
  CLUS_3              3               76
D19V6, multiclass
D19V7, multiclass
[1] "Remove cluster labels:" "ZNF844 MUTATED"        
clus
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0882       TCGA-06-0939 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2570       TCGA-06-5408 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-12-0692       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5301 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0862       TCGA-14-0871       TCGA-14-1823 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-16-0846       TCGA-19-1390       TCGA-19-1790       TCGA-19-2619 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2625       TCGA-19-5947       TCGA-19-5950 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5953       TCGA-19-5954 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-19-5955       TCGA-19-5958       TCGA-19-5959       TCGA-19-5960 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-27-1830       TCGA-27-1831 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1833       TCGA-27-1834       TCGA-27-1836 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-2518       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-5208       TCGA-28-5214       TCGA-32-1970 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-1991       TCGA-32-4210 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-5222       TCGA-41-2573       TCGA-41-2575 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-81-5910 
"ZNF844 WILD-TYPE" 
D19V8, multiclass
[1] "Remove cluster labels:" "ZNF844 MUTATED"        
clus
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0882       TCGA-06-0939 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2570       TCGA-06-5408 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-12-0692       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5301 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0862       TCGA-14-0871       TCGA-14-1823 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-16-0846       TCGA-19-1390       TCGA-19-1790       TCGA-19-2619 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2625       TCGA-19-5947       TCGA-19-5950 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5953       TCGA-19-5954 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-19-5955       TCGA-19-5958       TCGA-19-5959       TCGA-19-5960 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-27-1830       TCGA-27-1831 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1833       TCGA-27-1834       TCGA-27-1836 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-2518       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-5208       TCGA-28-5214       TCGA-32-1970 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-1991       TCGA-32-4210 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-5222       TCGA-41-2573       TCGA-41-2575 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-81-5910 
"ZNF844 WILD-TYPE" 
D19V9, multiclass
[1] "Remove cluster labels:" "ZNF844 MUTATED"        
clus
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0157       TCGA-06-0158       TCGA-06-0168       TCGA-06-0174 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0178       TCGA-06-0184       TCGA-06-0219       TCGA-06-0238 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0644       TCGA-06-0645       TCGA-06-0646       TCGA-06-0649 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0878 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0882       TCGA-06-1804       TCGA-06-2557       TCGA-06-2558 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5859       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0821       TCGA-12-1597       TCGA-12-3650 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-14-2554       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2523       TCGA-27-2524 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2509       TCGA-28-2510       TCGA-28-2513 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5215       TCGA-28-5216 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-5218       TCGA-28-5220       TCGA-32-1970       TCGA-32-1980 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4213       TCGA-32-5222       TCGA-41-2571 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
D19V10, multiclass
[1] "Remove cluster labels:" "ZNF844 MUTATED"        
clus
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0157       TCGA-06-0158       TCGA-06-0168       TCGA-06-0174 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0178       TCGA-06-0184       TCGA-06-0219       TCGA-06-0238 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0644       TCGA-06-0645       TCGA-06-0646       TCGA-06-0649 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0878 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-0882       TCGA-06-1804       TCGA-06-2557       TCGA-06-2558 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-06-5859       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0821       TCGA-12-1597       TCGA-12-3650 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-14-2554       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2523       TCGA-27-2524 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2509       TCGA-28-2510       TCGA-28-2513 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5215       TCGA-28-5216 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-28-5218       TCGA-28-5220       TCGA-32-1970       TCGA-32-1980 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4213       TCGA-32-5222       TCGA-41-2571 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 

Clustering(20) Variable = OR8K3 MUTATION ANALYSIS
D20V1, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             3              82
  CLUS_3             1              79
D20V2, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             0              59
  CLUS_3             3              76
D20V3, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             1              71
  CLUS_3             1              29
  CLUS_4             0              44
D20V4, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             2              79
  CLUS_3             1              48
D20V5, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             2             106
  CLUS_3             4              75
D20V6, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              19
  CLUS_3             1              24
  CLUS_4             0              26
D20V7, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              39
  CLUS_2             1              37
  CLUS_3             0              31
  CLUS_4             1              32
D20V8, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              28
  CLUS_3             2              66
D20V9, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             1              61
  CLUS_3             1              34
D20V10, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             0              21
  CLUS_3             2              57

Clustering(21) Variable = OR5AR1 MUTATION ANALYSIS
D21V1, multiclass
        clus
vv       OR5AR1 MUTATED OR5AR1 WILD-TYPE
  CLUS_1              3               73
  CLUS_2              2               83
  CLUS_3              0               80
D21V2, multiclass
        clus
vv       OR5AR1 MUTATED OR5AR1 WILD-TYPE
  CLUS_1              4               99
  CLUS_2              0               59
  CLUS_3              1               78
D21V3, multiclass
        clus
vv       OR5AR1 MUTATED OR5AR1 WILD-TYPE
  CLUS_1              0               57
  CLUS_2              2               70
  CLUS_3              0               30
  CLUS_4              2               42
D21V4, multiclass
        clus
vv       OR5AR1 MUTATED OR5AR1 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              2               79
  CLUS_3              0               49
D21V5, multiclass
        clus
vv       OR5AR1 MUTATED OR5AR1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2              106
  CLUS_3              1               78
D21V6, multiclass
        clus
vv       OR5AR1 MUTATED OR5AR1 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               19
  CLUS_3              0               25
  CLUS_4              1               25
D21V7, multiclass
        clus
vv       OR5AR1 MUTATED OR5AR1 WILD-TYPE
  CLUS_1              2               39
  CLUS_2              3               35
  CLUS_3              0               31
  CLUS_4              1               32
D21V8, multiclass
        clus
vv       OR5AR1 MUTATED OR5AR1 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               27
  CLUS_3              4               64
D21V9, multiclass
[1] "Remove cluster labels:" "OR5AR1 MUTATED"        
clus
  OR5AR1 MUTATED OR5AR1 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2569 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-5859       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0821       TCGA-12-1597       TCGA-12-3650 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-14-1823       TCGA-14-1825       TCGA-14-1829       TCGA-14-2554 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-15-0742       TCGA-15-1444       TCGA-16-0846       TCGA-16-1045 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-19-1390       TCGA-19-2619       TCGA-19-2620       TCGA-19-2624 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-5960       TCGA-26-1442 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-27-1830       TCGA-27-1831 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1834       TCGA-27-1835       TCGA-27-1837 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-27-2519       TCGA-27-2521       TCGA-27-2523       TCGA-27-2524 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2509       TCGA-28-2510       TCGA-28-2513 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5215       TCGA-28-5216 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-28-5218       TCGA-28-5220       TCGA-32-1970       TCGA-32-1980 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4213       TCGA-32-5222       TCGA-41-2571 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
D21V10, multiclass
[1] "Remove cluster labels:" "OR5AR1 MUTATED"        
clus
  OR5AR1 MUTATED OR5AR1 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2569 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-06-5859       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0821       TCGA-12-1597       TCGA-12-3650 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-14-1823       TCGA-14-1825       TCGA-14-1829       TCGA-14-2554 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-15-0742       TCGA-15-1444       TCGA-16-0846       TCGA-16-1045 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-19-1390       TCGA-19-2619       TCGA-19-2620       TCGA-19-2624 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-5960       TCGA-26-1442 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-27-1830       TCGA-27-1831 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1834       TCGA-27-1835       TCGA-27-1837 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-27-2519       TCGA-27-2521       TCGA-27-2523       TCGA-27-2524 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2509       TCGA-28-2510       TCGA-28-2513 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5215       TCGA-28-5216 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-28-5218       TCGA-28-5220       TCGA-32-1970       TCGA-32-1980 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4213       TCGA-32-5222       TCGA-41-2571 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" "OR5AR1 WILD-TYPE" 

Clustering(22) Variable = STAG2 MUTATION ANALYSIS
D22V1, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             4              72
  CLUS_2             3              82
  CLUS_3             3              77
D22V2, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             3             100
  CLUS_2             5              54
  CLUS_3             2              77
D22V3, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             5              67
  CLUS_3             0              30
  CLUS_4             0              44
D22V4, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             6              75
  CLUS_3             1              48
D22V5, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             4             104
  CLUS_3             3              76
D22V6, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              18
  CLUS_3             1              24
  CLUS_4             1              25
D22V7, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              41
  CLUS_2             2              36
  CLUS_3             0              31
  CLUS_4             5              28
D22V8, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              28
  CLUS_3             6              62
D22V9, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             3              59
  CLUS_3             3              32
D22V10, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             1              20
  CLUS_3             4              55

Clustering(23) Variable = SEMG1 MUTATION ANALYSIS
D23V1, multiclass
        clus
vv       SEMG1 MUTATED SEMG1 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             3              82
  CLUS_3             4              76
D23V2, multiclass
        clus
vv       SEMG1 MUTATED SEMG1 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             2              57
  CLUS_3             5              74
D23V3, multiclass
        clus
vv       SEMG1 MUTATED SEMG1 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             4              68
  CLUS_3             1              29
  CLUS_4             1              43
D23V4, multiclass
        clus
vv       SEMG1 MUTATED SEMG1 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             3              78
  CLUS_3             2              47
D23V5, multiclass
        clus
vv       SEMG1 MUTATED SEMG1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             5             103
  CLUS_3             0              79
D23V6, multiclass
[1] "Remove cluster labels:" "SEMG1 MUTATED"         
clus
  SEMG1 MUTATED SEMG1 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-2510      TCGA-28-5204      TCGA-28-5207 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5211      TCGA-28-5213 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-28-5214      TCGA-28-5215      TCGA-28-5216      TCGA-28-5218 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-28-5219      TCGA-28-5220      TCGA-28-6450      TCGA-32-1980 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
D23V7, multiclass
[1] "Remove cluster labels:" "SEMG1 MUTATED"         
clus
  SEMG1 MUTATED SEMG1 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0877      TCGA-06-0878 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5301      TCGA-14-0813 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-0871      TCGA-14-1823      TCGA-16-0846 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-1790      TCGA-19-2619      TCGA-19-2620 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2631      TCGA-19-4068      TCGA-19-5947 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2518      TCGA-27-2528      TCGA-28-1747 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-5208      TCGA-28-5214 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-81-5910 
"SEMG1 WILD-TYPE" 
D23V8, multiclass
[1] "Remove cluster labels:" "SEMG1 MUTATED"         
clus
  SEMG1 MUTATED SEMG1 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0877      TCGA-06-0878 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5301      TCGA-14-0813 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-0871      TCGA-14-1823      TCGA-16-0846 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-1790      TCGA-19-2619      TCGA-19-2620 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2631      TCGA-19-4068      TCGA-19-5947 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2518      TCGA-27-2528      TCGA-28-1747 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-5208      TCGA-28-5214 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" "SEMG1 WILD-TYPE" 
     TCGA-81-5910 
"SEMG1 WILD-TYPE" 
D23V9, multiclass
        clus
vv       SEMG1 MUTATED SEMG1 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             1              61
  CLUS_3             1              34
D23V10, multiclass
        clus
vv       SEMG1 MUTATED SEMG1 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             0              21
  CLUS_3             2              57

Clustering(24) Variable = CDC27 MUTATION ANALYSIS
D24V1, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              73
  CLUS_2             2              83
  CLUS_3             0              80
D24V2, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             0              59
  CLUS_3             3              76
D24V3, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             3              69
  CLUS_3             1              29
  CLUS_4             0              44
D24V4, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             3              78
  CLUS_3             1              48
D24V5, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1             107
  CLUS_3             2              77
D24V6, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              19
  CLUS_3             0              25
  CLUS_4             2              24
D24V7, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              38
  CLUS_2             1              37
  CLUS_3             0              31
  CLUS_4             0              33
D24V8, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             2              26
  CLUS_3             1              67
D24V9, multiclass
[1] "Remove cluster labels:" "CDC27 MUTATED"         
clus
  CDC27 MUTATED CDC27 WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0821      TCGA-12-1597      TCGA-12-3650 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-16-1045      TCGA-19-1390      TCGA-19-2619      TCGA-19-2620 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-5960 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-27-1830 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1834      TCGA-27-1835 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2528      TCGA-28-1747 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
D24V10, multiclass
[1] "Remove cluster labels:" "CDC27 MUTATED"         
clus
  CDC27 MUTATED CDC27 WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0821      TCGA-12-1597      TCGA-12-3650 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-16-1045      TCGA-19-1390      TCGA-19-2619      TCGA-19-2620 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-5960 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-27-1830 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1834      TCGA-27-1835 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2528      TCGA-28-1747 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 

Clustering(25) Variable = PDGFRA MUTATION ANALYSIS
D25V1, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              2               74
  CLUS_2              6               79
  CLUS_3              2               78
D25V2, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              3              100
  CLUS_2              1               58
  CLUS_3              6               73
D25V3, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              4               53
  CLUS_2              3               69
  CLUS_3              2               28
  CLUS_4              1               43
D25V4, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              3               70
  CLUS_2              5               76
  CLUS_3              2               47
D25V5, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3              105
  CLUS_3              3               76
D25V6, multiclass
[1] "Remove cluster labels:" "PDGFRA MUTATED"        
clus
  PDGFRA MUTATED PDGFRA WILD-TYPE 
               2              106 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0781       TCGA-14-0862 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-14-1043       TCGA-14-1395       TCGA-14-1450       TCGA-15-1444 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5135       TCGA-26-5136       TCGA-26-5139 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-28-2501       TCGA-28-2510 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1979       TCGA-32-1980       TCGA-32-5222 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4925 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4928       TCGA-76-4929 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-76-4931       TCGA-76-4932       TCGA-76-4934       TCGA-76-4935 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-76-6191       TCGA-76-6192       TCGA-76-6193       TCGA-76-6280 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6283       TCGA-76-6285       TCGA-76-6286 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-76-6656       TCGA-76-6657       TCGA-76-6660       TCGA-76-6661 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PDGFRA WILD-TYPE" "PDGFRA WILD-TYPE" 
D25V7, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              2               39
  CLUS_2              1               37
  CLUS_3              1               30
  CLUS_4              1               32
D25V8, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               27
  CLUS_3              3               65
D25V9, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              5               39
  CLUS_2              1               61
  CLUS_3              0               35
D25V10, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1               60
  CLUS_2              0               21
  CLUS_3              5               54

Clustering(26) Variable = ADAM29 MUTATION ANALYSIS
D26V1, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              3               73
  CLUS_2              2               83
  CLUS_3              3               77
D26V2, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              3              100
  CLUS_2              3               56
  CLUS_3              2               77
D26V3, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              4               68
  CLUS_3              0               30
  CLUS_4              1               43
D26V4, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              2               79
  CLUS_3              2               47
D26V5, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              4              104
  CLUS_3              3               76
D26V6, multiclass
[1] "Remove cluster labels:" "ADAM29 MUTATED"        
clus
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               1              107 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0740       TCGA-14-0781 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-15-1444       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5958 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5135       TCGA-26-5136 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-26-5139       TCGA-26-6173       TCGA-26-6174       TCGA-28-2501 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-28-2510       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1979       TCGA-32-1980 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-32-5222       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-76-4935       TCGA-76-6191       TCGA-76-6192       TCGA-76-6193 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-76-6280       TCGA-76-6282       TCGA-76-6283       TCGA-76-6285 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6660 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
D26V7, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              1               40
  CLUS_2              0               38
  CLUS_3              1               30
  CLUS_4              2               31
D26V8, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               28
  CLUS_3              3               65
D26V9, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              1               61
  CLUS_3              3               32
D26V10, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              0               21
  CLUS_3              3               56

Clustering(27) Variable = SULT1B1 MUTATION ANALYSIS
D27V1, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               4                72
  CLUS_2               1                84
  CLUS_3               0                80
D27V2, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               3               100
  CLUS_2               0                59
  CLUS_3               2                77
D27V3, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               1                56
  CLUS_2               1                71
  CLUS_3               0                30
  CLUS_4               3                41
D27V4, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               3                70
  CLUS_2               2                79
  CLUS_3               0                49
D27V5, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               4               104
  CLUS_3               0                79
D27V6, multiclass
[1] "Remove cluster labels:" "SULT1B1 MUTATED"       
clus
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                1               107 
       TCGA-06-0650        TCGA-06-1804        TCGA-06-1806        TCGA-06-5408 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5417        TCGA-06-5418 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-12-5295 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-12-5299        TCGA-12-5301        TCGA-14-0740        TCGA-14-0781 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-14-0862        TCGA-14-1043        TCGA-14-1450        TCGA-15-1444 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-19-5947        TCGA-19-5950        TCGA-19-5951        TCGA-19-5952 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-19-5953        TCGA-19-5954        TCGA-19-5955        TCGA-19-5958 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1442        TCGA-26-5132 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-28-2501 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-28-2510        TCGA-28-5204        TCGA-28-5207        TCGA-28-5208 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-28-5209        TCGA-28-5211        TCGA-28-5213        TCGA-28-5214 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-28-5215        TCGA-28-5216        TCGA-28-5218        TCGA-28-5219 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-28-5220        TCGA-28-6450        TCGA-32-1979        TCGA-32-1980 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-32-5222        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6584 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-76-4925        TCGA-76-4926        TCGA-76-4927        TCGA-76-4928 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4932        TCGA-76-4934 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6283        TCGA-76-6285 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-76-6286        TCGA-76-6656        TCGA-76-6657        TCGA-76-6660 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-76-6661        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
D27V7, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               2                39
  CLUS_2               0                38
  CLUS_3               0                31
  CLUS_4               1                32
D27V8, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                28
  CLUS_3               1                67
D27V9, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               1                43
  CLUS_2               1                61
  CLUS_3               2                33
D27V10, multiclass
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CLUS_1               2                59
  CLUS_2               1                20
  CLUS_3               1                58

Clustering(28) Variable = ABCC9 MUTATION ANALYSIS
D28V1, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             3              73
  CLUS_2             1              84
  CLUS_3             6              74
D28V2, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             6              97
  CLUS_2             3              56
  CLUS_3             1              78
D28V3, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             1              71
  CLUS_3             1              29
  CLUS_4             4              40
D28V4, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             3              78
  CLUS_3             1              48
D28V5, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             6             102
  CLUS_3             3              76
D28V6, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             4              16
  CLUS_3             1              24
  CLUS_4             1              25
D28V7, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             2              39
  CLUS_2             0              38
  CLUS_3             2              29
  CLUS_4             2              31
D28V8, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              26
  CLUS_3             2              66
D28V9, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             3              59
  CLUS_3             0              35
D28V10, multiclass
        clus
vv       ABCC9 MUTATED ABCC9 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             1              20
  CLUS_3             0              59

Clustering(29) Variable = NLRP5 MUTATION ANALYSIS
D29V1, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             4              72
  CLUS_2             3              82
  CLUS_3             4              76
D29V2, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             5              98
  CLUS_2             2              57
  CLUS_3             4              75
D29V3, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             4              68
  CLUS_3             1              29
  CLUS_4             1              43
D29V4, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             3              78
  CLUS_3             4              45
D29V5, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3             105
  CLUS_3             3              76
D29V6, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             0              20
  CLUS_3             1              24
  CLUS_4             1              25
D29V7, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             3              38
  CLUS_2             2              36
  CLUS_3             1              30
  CLUS_4             1              32
D29V8, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             3              25
  CLUS_3             3              65
D29V9, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             2              60
  CLUS_3             2              33
D29V10, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             1              20
  CLUS_3             1              58

Clustering(30) Variable = LZTR1 MUTATION ANALYSIS
D30V1, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             3              82
  CLUS_3             3              77
D30V2, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             4              99
  CLUS_2             1              58
  CLUS_3             2              77
D30V3, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             2              70
  CLUS_3             0              30
  CLUS_4             2              42
D30V4, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             2              79
  CLUS_3             1              48
D30V5, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3             105
  CLUS_3             3              76
D30V6, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              18
  CLUS_3             0              25
  CLUS_4             0              26
D30V7, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             2              36
  CLUS_3             2              29
  CLUS_4             2              31
D30V8, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              27
  CLUS_3             4              64
D30V9, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0              62
  CLUS_3             1              34
D30V10, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             1              20
  CLUS_3             1              58

Clustering(31) Variable = CALCR MUTATION ANALYSIS
D31V1, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             0              76
  CLUS_2             3              82
  CLUS_3             3              77
D31V2, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             2             101
  CLUS_2             2              57
  CLUS_3             2              77
D31V3, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             2              55
  CLUS_2             2              70
  CLUS_3             0              30
  CLUS_4             1              43
D31V4, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              79
  CLUS_3             2              47
D31V5, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             3              84
  CLUS_2             4             104
  CLUS_3             0              79
D31V6, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              19
  CLUS_3             1              24
  CLUS_4             1              25
D31V7, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             1              40
  CLUS_2             1              37
  CLUS_3             0              31
  CLUS_4             3              30
D31V8, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              28
  CLUS_3             4              64
D31V9, multiclass
[1] "Remove cluster labels:" "CALCR MUTATED"         
clus
  CALCR MUTATED CALCR WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0781      TCGA-14-0787      TCGA-14-0789 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0817      TCGA-14-1823      TCGA-14-1825 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-15-0742      TCGA-15-1444 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-16-0846      TCGA-16-1045      TCGA-19-1390      TCGA-19-2619 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2624      TCGA-19-2625      TCGA-19-2629 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1834 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1837      TCGA-27-2519      TCGA-27-2521 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2528      TCGA-28-1747 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
D31V10, multiclass
[1] "Remove cluster labels:" "CALCR MUTATED"         
clus
  CALCR MUTATED CALCR WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0781      TCGA-14-0787      TCGA-14-0789 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0817      TCGA-14-1823      TCGA-14-1825 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-15-0742      TCGA-15-1444 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-16-0846      TCGA-16-1045      TCGA-19-1390      TCGA-19-2619 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2624      TCGA-19-2625      TCGA-19-2629 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1834 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1837      TCGA-27-2519      TCGA-27-2521 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2528      TCGA-28-1747 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"CALCR WILD-TYPE" "CALCR WILD-TYPE" "CALCR WILD-TYPE" 

Clustering(32) Variable = QKI MUTATION ANALYSIS
D32V1, multiclass
        clus
vv       QKI MUTATED QKI WILD-TYPE
  CLUS_1           4            72
  CLUS_2           1            84
  CLUS_3           0            80
D32V2, multiclass
        clus
vv       QKI MUTATED QKI WILD-TYPE
  CLUS_1           4            99
  CLUS_2           0            59
  CLUS_3           1            78
D32V3, multiclass
        clus
vv       QKI MUTATED QKI WILD-TYPE
  CLUS_1           1            56
  CLUS_2           2            70
  CLUS_3           0            30
  CLUS_4           1            43
D32V4, multiclass
        clus
vv       QKI MUTATED QKI WILD-TYPE
  CLUS_1           1            72
  CLUS_2           3            78
  CLUS_3           0            49
D32V5, multiclass
        clus
vv       QKI MUTATED QKI WILD-TYPE
  CLUS_1           1            86
  CLUS_2           3           105
  CLUS_3           1            78
D32V6, multiclass
        clus
vv       QKI MUTATED QKI WILD-TYPE
  CLUS_1           1            36
  CLUS_2           2            18
  CLUS_3           0            25
  CLUS_4           0            26
D32V7, multiclass
        clus
vv       QKI MUTATED QKI WILD-TYPE
  CLUS_1           2            39
  CLUS_2           0            38
  CLUS_3           0            31
  CLUS_4           1            32
D32V8, multiclass
        clus
vv       QKI MUTATED QKI WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            27
  CLUS_3           1            67
D32V9, multiclass
[1] "Remove cluster labels:" "QKI MUTATED"           
clus
  QKI MUTATED QKI WILD-TYPE 
            2           139 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-14-1823    TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-15-1444    TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-27-2523    TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5209    TCGA-28-5213    TCGA-28-5215 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970    TCGA-32-1980 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634    TCGA-32-2638 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572    TCGA-41-3915 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
D32V10, multiclass
[1] "Remove cluster labels:" "QKI MUTATED"           
clus
  QKI MUTATED QKI WILD-TYPE 
            2           139 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-14-1823    TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-15-1444    TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-27-2523    TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5209    TCGA-28-5213    TCGA-28-5215 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970    TCGA-32-1980 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634    TCGA-32-2638 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572    TCGA-41-3915 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" "QKI WILD-TYPE" 

Clustering(33) Variable = ZPBP MUTATION ANALYSIS
D33V1, multiclass
        clus
vv       ZPBP MUTATED ZPBP WILD-TYPE
  CLUS_1            1             75
  CLUS_2            0             85
  CLUS_3            3             77
D33V2, multiclass
        clus
vv       ZPBP MUTATED ZPBP WILD-TYPE
  CLUS_1            2            101
  CLUS_2            2             57
  CLUS_3            0             79
D33V3, multiclass
        clus
vv       ZPBP MUTATED ZPBP WILD-TYPE
  CLUS_1            0             57
  CLUS_2            4             68
  CLUS_3            0             30
  CLUS_4            0             44
D33V4, multiclass
        clus
vv       ZPBP MUTATED ZPBP WILD-TYPE
  CLUS_1            1             72
  CLUS_2            3             78
  CLUS_3            0             49
D33V5, multiclass
        clus
vv       ZPBP MUTATED ZPBP WILD-TYPE
  CLUS_1            1             86
  CLUS_2            4            104
  CLUS_3            0             79
D33V6, multiclass
[1] "Remove cluster labels:" "ZPBP MUTATED"          
clus
  ZPBP MUTATED ZPBP WILD-TYPE 
             1            107 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5408 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-12-5295 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-12-5299     TCGA-12-5301     TCGA-14-0740     TCGA-14-0781 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-14-0862     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-15-1444     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1442 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-28-2501     TCGA-28-2510     TCGA-28-5204     TCGA-28-5207 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5209     TCGA-28-5211     TCGA-28-5213 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-28-5214     TCGA-28-5215     TCGA-28-5216     TCGA-28-5218 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-28-5219     TCGA-28-5220     TCGA-28-6450     TCGA-32-1979 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-32-1980     TCGA-32-5222     TCGA-41-5651     TCGA-41-6646 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6282     TCGA-76-6283     TCGA-76-6285 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6660 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
D33V7, multiclass
[1] "Remove cluster labels:" "ZPBP MUTATED"          
clus
  ZPBP MUTATED ZPBP WILD-TYPE 
             1            142 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2564     TCGA-06-2565 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2570     TCGA-06-5408     TCGA-06-5410 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-08-0386     TCGA-12-0692 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5301     TCGA-14-0813 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-14-0862     TCGA-14-0871     TCGA-14-1823     TCGA-16-0846 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-1390     TCGA-19-1790     TCGA-19-2619     TCGA-19-2620 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2631     TCGA-19-4068     TCGA-19-5947 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-5950     TCGA-19-5951     TCGA-19-5952     TCGA-19-5953 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-26-5134     TCGA-26-6173     TCGA-26-6174     TCGA-27-1830 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-27-1836     TCGA-27-2518     TCGA-27-2528     TCGA-28-1747 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2501     TCGA-28-5208     TCGA-28-5214 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-5222     TCGA-41-2573 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-41-4097     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-6192     TCGA-76-6193 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6656 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6657     TCGA-76-6660     TCGA-76-6662     TCGA-76-6663 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6664     TCGA-81-5910 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
D33V8, multiclass
[1] "Remove cluster labels:" "ZPBP MUTATED"          
clus
  ZPBP MUTATED ZPBP WILD-TYPE 
             1            142 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2564     TCGA-06-2565 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2570     TCGA-06-5408     TCGA-06-5410 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-08-0386     TCGA-12-0692 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5301     TCGA-14-0813 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-14-0862     TCGA-14-0871     TCGA-14-1823     TCGA-16-0846 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-1390     TCGA-19-1790     TCGA-19-2619     TCGA-19-2620 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2631     TCGA-19-4068     TCGA-19-5947 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-5950     TCGA-19-5951     TCGA-19-5952     TCGA-19-5953 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-26-5134     TCGA-26-6173     TCGA-26-6174     TCGA-27-1830 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-27-1836     TCGA-27-2518     TCGA-27-2528     TCGA-28-1747 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2501     TCGA-28-5208     TCGA-28-5214 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-5222     TCGA-41-2573 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-41-4097     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-6192     TCGA-76-6193 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6656 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6657     TCGA-76-6660     TCGA-76-6662     TCGA-76-6663 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
    TCGA-76-6664     TCGA-81-5910 
"ZPBP WILD-TYPE" "ZPBP WILD-TYPE" 
D33V9, multiclass
        clus
vv       ZPBP MUTATED ZPBP WILD-TYPE
  CLUS_1            0             44
  CLUS_2            2             60
  CLUS_3            1             34
D33V10, multiclass
        clus
vv       ZPBP MUTATED ZPBP WILD-TYPE
  CLUS_1            2             59
  CLUS_2            0             21
  CLUS_3            1             58

Clustering(34) Variable = PSPH MUTATION ANALYSIS
D34V1, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            0             76
  CLUS_2            2             83
  CLUS_3            3             77
D34V2, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            1            102
  CLUS_2            2             57
  CLUS_3            2             77
D34V3, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            1             56
  CLUS_2            2             70
  CLUS_3            0             30
  CLUS_4            0             44
D34V4, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            0             73
  CLUS_2            2             79
  CLUS_3            1             48
D34V5, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            0             87
  CLUS_2            5            103
  CLUS_3            0             79
D34V6, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            0             37
  CLUS_2            1             19
  CLUS_3            2             23
  CLUS_4            0             26
D34V7, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            0             41
  CLUS_2            0             38
  CLUS_3            2             29
  CLUS_4            1             32
D34V8, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             28
  CLUS_3            1             67
D34V9, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            1             43
  CLUS_2            1             61
  CLUS_3            1             34
D34V10, multiclass
        clus
vv       PSPH MUTATED PSPH WILD-TYPE
  CLUS_1            1             60
  CLUS_2            1             20
  CLUS_3            1             58

Clustering(35) Variable = UGT2A3 MUTATION ANALYSIS
D35V1, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              2               83
  CLUS_3              2               78
D35V2, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1              102
  CLUS_2              2               57
  CLUS_3              2               77
D35V3, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              1               71
  CLUS_3              1               29
  CLUS_4              0               44
D35V4, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              2               79
  CLUS_3              1               48
D35V5, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2              106
  CLUS_3              1               78
D35V6, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               19
  CLUS_3              1               24
  CLUS_4              0               26
D35V7, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               40
  CLUS_2              1               37
  CLUS_3              2               29
  CLUS_4              0               33
D35V8, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               27
  CLUS_3              1               67
D35V9, multiclass
[1] "Remove cluster labels:" "UGT2A3 MUTATED"        
clus
  UGT2A3 MUTATED UGT2A3 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-08-0386       TCGA-12-0616 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0821       TCGA-12-1597 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-12-5299       TCGA-14-0781       TCGA-14-0787       TCGA-14-0789 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0817       TCGA-14-1825       TCGA-14-1829 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-14-2554       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-5960       TCGA-26-1442 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-27-1830       TCGA-27-1831 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1834       TCGA-27-1835       TCGA-27-1837 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-27-2519       TCGA-27-2521       TCGA-27-2523       TCGA-27-2524 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2509       TCGA-28-2510       TCGA-28-2513 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5215       TCGA-28-5216 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-28-5218       TCGA-28-5220       TCGA-32-1970       TCGA-32-1980 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4213       TCGA-32-5222       TCGA-41-2571 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
D35V10, multiclass
[1] "Remove cluster labels:" "UGT2A3 MUTATED"        
clus
  UGT2A3 MUTATED UGT2A3 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-08-0386       TCGA-12-0616 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0821       TCGA-12-1597 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-12-5299       TCGA-14-0781       TCGA-14-0787       TCGA-14-0789 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0817       TCGA-14-1825       TCGA-14-1829 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-14-2554       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-5960       TCGA-26-1442 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-27-1830       TCGA-27-1831 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1834       TCGA-27-1835       TCGA-27-1837 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-27-2519       TCGA-27-2521       TCGA-27-2523       TCGA-27-2524 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2509       TCGA-28-2510       TCGA-28-2513 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5215       TCGA-28-5216 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-28-5218       TCGA-28-5220       TCGA-32-1970       TCGA-32-1980 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4213       TCGA-32-5222       TCGA-41-2571 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" "UGT2A3 WILD-TYPE" 

Clustering(36) Variable = WNT2 MUTATION ANALYSIS
D36V1, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             76
  CLUS_2            0             85
  CLUS_3            4             76
D36V2, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0            103
  CLUS_2            4             55
  CLUS_3            0             79
D36V3, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            1             56
  CLUS_2            1             71
  CLUS_3            0             30
  CLUS_4            1             43
D36V4, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            1             72
  CLUS_2            2             79
  CLUS_3            0             49
D36V5, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2            106
  CLUS_3            1             78
D36V6, multiclass
[1] "Remove cluster labels:" "WNT2 MUTATED"          
clus
  WNT2 MUTATED WNT2 WILD-TYPE 
             2            106 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5410 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-12-5295     TCGA-12-5299 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1979     TCGA-32-1980 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-5222     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4925 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6280 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6286 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6660     TCGA-76-6661 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
D36V7, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             41
  CLUS_2            0             38
  CLUS_3            2             29
  CLUS_4            3             30
D36V8, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             28
  CLUS_3            2             66
D36V9, multiclass
[1] "Remove cluster labels:" "WNT2 MUTATED"          
clus
  WNT2 MUTATED WNT2 WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-2486     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0141     TCGA-06-0157     TCGA-06-0158     TCGA-06-0168 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0219 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0649     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0882     TCGA-06-1804     TCGA-06-2557 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2558     TCGA-06-2559     TCGA-06-2561     TCGA-06-2562 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2563     TCGA-06-2564     TCGA-06-2565     TCGA-06-2567 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2569     TCGA-06-2570     TCGA-06-5410     TCGA-06-5411 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5859     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0821     TCGA-12-1597     TCGA-12-3650 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5299     TCGA-14-0781 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0817 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-15-0742     TCGA-15-1444     TCGA-16-0846     TCGA-16-1045 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-2619     TCGA-19-2620     TCGA-19-2624 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-5960     TCGA-26-1442 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
D36V10, multiclass
[1] "Remove cluster labels:" "WNT2 MUTATED"          
clus
  WNT2 MUTATED WNT2 WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-2486     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0141     TCGA-06-0157     TCGA-06-0158     TCGA-06-0168 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0219 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0649     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0882     TCGA-06-1804     TCGA-06-2557 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2558     TCGA-06-2559     TCGA-06-2561     TCGA-06-2562 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2563     TCGA-06-2564     TCGA-06-2565     TCGA-06-2567 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2569     TCGA-06-2570     TCGA-06-5410     TCGA-06-5411 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5859     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0821     TCGA-12-1597     TCGA-12-3650 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5299     TCGA-14-0781 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0817 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-15-0742     TCGA-15-1444     TCGA-16-0846     TCGA-16-1045 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-2619     TCGA-19-2620     TCGA-19-2624 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-5960     TCGA-26-1442 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 

Clustering(37) Variable = OR5D18 MUTATION ANALYSIS
D37V1, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              0               76
  CLUS_2              1               84
  CLUS_3              3               77
D37V2, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1               58
  CLUS_3              1               78
D37V3, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              0               57
  CLUS_2              2               70
  CLUS_3              1               29
  CLUS_4              1               43
D37V4, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              1               80
  CLUS_3              2               47
D37V5, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              4              104
  CLUS_3              1               78
D37V6, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               19
  CLUS_3              0               25
  CLUS_4              0               26
D37V7, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              1               40
  CLUS_2              2               36
  CLUS_3              1               30
  CLUS_4              0               33
D37V8, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               27
  CLUS_3              1               67
D37V9, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              1               61
  CLUS_3              1               34
D37V10, multiclass
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              0               21
  CLUS_3              2               57

Clustering(38) Variable = OR5W2 MUTATION ANALYSIS
D38V1, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             0              85
  CLUS_3             2              78
D38V2, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             2              57
  CLUS_3             0              79
D38V3, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             0              72
  CLUS_3             0              30
  CLUS_4             1              43
D38V4, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              80
  CLUS_3             0              49
D38V5, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2             106
  CLUS_3             1              78
D38V6, multiclass
[1] "Remove cluster labels:" "OR5W2 MUTATED"         
clus
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              2             106 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-2510      TCGA-28-5204      TCGA-28-5207 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5211      TCGA-28-5213 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-5214      TCGA-28-5215      TCGA-28-5216      TCGA-28-5218 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-5219      TCGA-28-5220      TCGA-28-6450      TCGA-32-1979 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-5222      TCGA-41-5651      TCGA-74-6573 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-6656      TCGA-76-6657      TCGA-76-6660      TCGA-76-6661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-81-5911      TCGA-87-5896 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
D38V7, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             2              39
  CLUS_2             0              38
  CLUS_3             1              30
  CLUS_4             0              33
D38V8, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              27
  CLUS_3             0              68
D38V9, multiclass
[1] "Remove cluster labels:" "OR5W2 MUTATED"         
clus
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0781      TCGA-14-0787      TCGA-14-0789 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0817      TCGA-14-1823      TCGA-14-1825 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-15-0742      TCGA-15-1444 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-1045      TCGA-19-1390      TCGA-19-2619 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2624      TCGA-19-2625      TCGA-19-2629 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1834 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1837      TCGA-27-2519      TCGA-27-2521 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-28-1747 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2510      TCGA-28-2513 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
D38V10, multiclass
[1] "Remove cluster labels:" "OR5W2 MUTATED"         
clus
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0781      TCGA-14-0787      TCGA-14-0789 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0817      TCGA-14-1823      TCGA-14-1825 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-15-0742      TCGA-15-1444 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-1045      TCGA-19-1390      TCGA-19-2619 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2624      TCGA-19-2625      TCGA-19-2629 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1834 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1837      TCGA-27-2519      TCGA-27-2521 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-28-1747 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2510      TCGA-28-2513 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 

Clustering(39) Variable = ABCB1 MUTATION ANALYSIS
D39V1, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             3              73
  CLUS_2             2              83
  CLUS_3             4              76
D39V2, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             3             100
  CLUS_2             5              54
  CLUS_3             1              78
D39V3, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             4              68
  CLUS_3             0              30
  CLUS_4             0              44
D39V4, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             5              76
  CLUS_3             1              48
D39V5, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2             106
  CLUS_3             4              75
D39V6, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              20
  CLUS_3             1              24
  CLUS_4             0              26
D39V7, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             2              36
  CLUS_3             1              30
  CLUS_4             1              32
D39V8, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              27
  CLUS_3             3              65
D39V9, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             3              59
  CLUS_3             1              34
D39V10, multiclass
        clus
vv       ABCB1 MUTATED ABCB1 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             3              18
  CLUS_3             2              57

Clustering(40) Variable = COL1A2 MUTATION ANALYSIS
D40V1, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              2               74
  CLUS_2              2               83
  CLUS_3              4               76
D40V2, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              4               55
  CLUS_3              2               77
D40V3, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              1               71
  CLUS_3              2               28
  CLUS_4              2               42
D40V4, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              4               77
  CLUS_3              1               48
D40V5, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              4              104
  CLUS_3              4               75
D40V6, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               19
  CLUS_3              0               25
  CLUS_4              1               25
D40V7, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              1               40
  CLUS_2              0               38
  CLUS_3              1               30
  CLUS_4              2               31
D40V8, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               27
  CLUS_3              2               66
D40V9, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              3               59
  CLUS_3              1               34
D40V10, multiclass
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              3               18
  CLUS_3              0               59

Clustering(41) Variable = ATRX MUTATION ANALYSIS
D41V1, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            2             74
  CLUS_2           11             74
  CLUS_3            0             80
D41V2, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            2            101
  CLUS_2            0             59
  CLUS_3           11             68
D41V3, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            1             56
  CLUS_2            9             63
  CLUS_3            0             30
  CLUS_4            0             44
D41V4, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            0             73
  CLUS_2            2             79
  CLUS_3            8             41
D41V5, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1            107
  CLUS_3           12             67
D41V6, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             19
  CLUS_3            0             25
  CLUS_4            4             22
D41V7, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            0             41
  CLUS_2            6             32
  CLUS_3            0             31
  CLUS_4            2             31
D41V8, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            0             47
  CLUS_2            0             28
  CLUS_3            8             60
D41V9, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            7             37
  CLUS_2            1             61
  CLUS_3            0             35
D41V10, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            1             60
  CLUS_2            0             21
  CLUS_3            7             52

Clustering(42) Variable = C1ORF150 MUTATION ANALYSIS
D42V1, multiclass
[1] "Remove cluster labels:" "C1ORF150 MUTATED"      
clus
  C1ORF150 MUTATED C1ORF150 WILD-TYPE 
                 1                240 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0122         TCGA-06-0124 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0126         TCGA-06-0128         TCGA-06-0129 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0137 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0139         TCGA-06-0140         TCGA-06-0141 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0142         TCGA-06-0145         TCGA-06-0152 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0166         TCGA-06-0167 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0168         TCGA-06-0169         TCGA-06-0173 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0188         TCGA-06-0189 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0195         TCGA-06-0213 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0214         TCGA-06-0216         TCGA-06-0219 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0644         TCGA-06-0645 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0646         TCGA-06-0648         TCGA-06-0649 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0650         TCGA-06-0686         TCGA-06-0743 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0744         TCGA-06-0745         TCGA-06-0747 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0749         TCGA-06-0750         TCGA-06-0875 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0876         TCGA-06-0877         TCGA-06-0878 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0879         TCGA-06-0881         TCGA-06-0882 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0939         TCGA-06-1804         TCGA-06-2557 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2567         TCGA-06-2569 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5417 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6389         TCGA-06-6390 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-6391         TCGA-08-0386         TCGA-12-0616 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0688 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0692         TCGA-12-0821         TCGA-12-1597 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3652 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-3653         TCGA-12-5295         TCGA-12-5299 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-5301         TCGA-14-0781         TCGA-14-0786 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0787         TCGA-14-0789         TCGA-14-0790 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0813         TCGA-14-0817         TCGA-14-0871 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-1456         TCGA-14-1823         TCGA-14-1825 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-14-3476 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-4157         TCGA-15-0742         TCGA-15-1444 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-16-0846         TCGA-16-0861         TCGA-16-1045 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-16-1048         TCGA-19-1390         TCGA-19-1790 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2623 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4068         TCGA-19-5947 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5958 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-5959         TCGA-19-5960         TCGA-26-1439 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5139         TCGA-27-1830         TCGA-27-1831 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1833         TCGA-27-1834 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1835         TCGA-27-1836         TCGA-27-1837 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1838         TCGA-27-2518         TCGA-27-2519 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2521         TCGA-27-2523         TCGA-27-2524 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2526         TCGA-27-2527         TCGA-27-2528 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1753         TCGA-28-2501 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2509         TCGA-28-2510 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1979         TCGA-32-1980 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1991 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2491         TCGA-32-2494         TCGA-32-2495 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2498         TCGA-32-2615         TCGA-32-2632 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2634         TCGA-32-2638         TCGA-32-4208 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-4209         TCGA-32-4210         TCGA-32-4211 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4927 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4932 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6282 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-6285         TCGA-81-5910         TCGA-87-5896 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
D42V2, multiclass
[1] "Remove cluster labels:" "C1ORF150 MUTATED"      
clus
  C1ORF150 MUTATED C1ORF150 WILD-TYPE 
                 1                240 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0122         TCGA-06-0124 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0126         TCGA-06-0128         TCGA-06-0129 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0137 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0139         TCGA-06-0140         TCGA-06-0141 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0142         TCGA-06-0145         TCGA-06-0152 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0166         TCGA-06-0167 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0168         TCGA-06-0169         TCGA-06-0173 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0188         TCGA-06-0189 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0195         TCGA-06-0213 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0214         TCGA-06-0216         TCGA-06-0219 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0644         TCGA-06-0645 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0646         TCGA-06-0648         TCGA-06-0649 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0650         TCGA-06-0686         TCGA-06-0743 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0744         TCGA-06-0745         TCGA-06-0747 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0749         TCGA-06-0750         TCGA-06-0875 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0876         TCGA-06-0877         TCGA-06-0878 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0879         TCGA-06-0881         TCGA-06-0882 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0939         TCGA-06-1804         TCGA-06-2557 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2567         TCGA-06-2569 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5417 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6389         TCGA-06-6390 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-6391         TCGA-08-0386         TCGA-12-0616 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0688 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0692         TCGA-12-0821         TCGA-12-1597 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3652 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-3653         TCGA-12-5295         TCGA-12-5299 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-5301         TCGA-14-0781         TCGA-14-0786 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0787         TCGA-14-0789         TCGA-14-0790 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0813         TCGA-14-0817         TCGA-14-0871 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-1456         TCGA-14-1823         TCGA-14-1825 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-14-3476 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-4157         TCGA-15-0742         TCGA-15-1444 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-16-0846         TCGA-16-0861         TCGA-16-1045 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-16-1048         TCGA-19-1390         TCGA-19-1790 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2623 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4068         TCGA-19-5947 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5958 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-5959         TCGA-19-5960         TCGA-26-1439 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5139         TCGA-27-1830         TCGA-27-1831 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1833         TCGA-27-1834 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1835         TCGA-27-1836         TCGA-27-1837 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1838         TCGA-27-2518         TCGA-27-2519 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2521         TCGA-27-2523         TCGA-27-2524 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2526         TCGA-27-2527         TCGA-27-2528 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1753         TCGA-28-2501 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2509         TCGA-28-2510 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1979         TCGA-32-1980 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1991 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2491         TCGA-32-2494         TCGA-32-2495 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2498         TCGA-32-2615         TCGA-32-2632 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2634         TCGA-32-2638         TCGA-32-4208 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-4209         TCGA-32-4210         TCGA-32-4211 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4927 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4932 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6282 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-6285         TCGA-81-5910         TCGA-87-5896 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
D42V3, multiclass
[1] "Remove cluster labels:" "C1ORF150 MUTATED"      
clus
  C1ORF150 MUTATED C1ORF150 WILD-TYPE 
                 1                202 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-0055         TCGA-02-2470         TCGA-02-2483 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0122 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0126         TCGA-06-0128 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0129         TCGA-06-0130         TCGA-06-0137 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0139         TCGA-06-0140         TCGA-06-0141 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0142         TCGA-06-0145         TCGA-06-0151 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0152         TCGA-06-0154         TCGA-06-0155 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0166 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0168         TCGA-06-0169         TCGA-06-0173 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0188         TCGA-06-0189 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0195         TCGA-06-0213 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0214         TCGA-06-0216         TCGA-06-0219 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0644         TCGA-06-0645 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0646         TCGA-06-0648         TCGA-06-0649 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2557         TCGA-06-2558         TCGA-06-2559 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2561         TCGA-06-2562         TCGA-06-2563 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2564         TCGA-06-2565         TCGA-06-2567 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5414 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5417         TCGA-06-5418 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-08-0386         TCGA-12-0616         TCGA-12-0618 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0688         TCGA-12-0692 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0821         TCGA-12-1597         TCGA-12-3649 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-3650         TCGA-12-3652         TCGA-12-3653 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0813         TCGA-14-0817 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0871         TCGA-14-1456         TCGA-14-1823 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-1825         TCGA-14-1829         TCGA-14-2554 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-3476         TCGA-14-4157         TCGA-15-0742 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-16-0846         TCGA-16-0861         TCGA-16-1045 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-16-1048         TCGA-19-1390         TCGA-19-1790 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2623 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4068         TCGA-26-1439 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1747 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-1753         TCGA-28-2502         TCGA-28-2509 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5220         TCGA-32-1970         TCGA-32-1977 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1991 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2491         TCGA-32-2494         TCGA-32-2495 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2498         TCGA-32-2615         TCGA-32-2632 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2634         TCGA-32-2638         TCGA-32-4208 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-4209         TCGA-32-4210         TCGA-32-4211 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-76-4925 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4927         TCGA-76-4928 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4932         TCGA-76-4934 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4935 
"C1ORF150 WILD-TYPE" 
D42V4, multiclass
[1] "Remove cluster labels:" "C1ORF150 MUTATED"      
clus
  C1ORF150 MUTATED C1ORF150 WILD-TYPE 
                 1                202 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-0055         TCGA-02-2470         TCGA-02-2483 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0122 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0126         TCGA-06-0128 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0129         TCGA-06-0130         TCGA-06-0137 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0139         TCGA-06-0140         TCGA-06-0141 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0142         TCGA-06-0145         TCGA-06-0151 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0152         TCGA-06-0154         TCGA-06-0155 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0166 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0168         TCGA-06-0169         TCGA-06-0173 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0188         TCGA-06-0189 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0195         TCGA-06-0213 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0214         TCGA-06-0216         TCGA-06-0219 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0644         TCGA-06-0645 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0646         TCGA-06-0648         TCGA-06-0649 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2557         TCGA-06-2558         TCGA-06-2559 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2561         TCGA-06-2562         TCGA-06-2563 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2564         TCGA-06-2565         TCGA-06-2567 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5414 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5417         TCGA-06-5418 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-08-0386         TCGA-12-0616         TCGA-12-0618 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0688         TCGA-12-0692 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0821         TCGA-12-1597         TCGA-12-3649 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-3650         TCGA-12-3652         TCGA-12-3653 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0813         TCGA-14-0817 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0871         TCGA-14-1456         TCGA-14-1823 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-1825         TCGA-14-1829         TCGA-14-2554 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-3476         TCGA-14-4157         TCGA-15-0742 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-16-0846         TCGA-16-0861         TCGA-16-1045 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-16-1048         TCGA-19-1390         TCGA-19-1790 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2623 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4068         TCGA-26-1439 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1747 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-1753         TCGA-28-2502         TCGA-28-2509 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5220         TCGA-32-1970         TCGA-32-1977 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1991 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2491         TCGA-32-2494         TCGA-32-2495 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2498         TCGA-32-2615         TCGA-32-2632 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2634         TCGA-32-2638         TCGA-32-4208 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-4209         TCGA-32-4210         TCGA-32-4211 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-76-4925 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4927         TCGA-76-4928 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4932         TCGA-76-4934 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4935 
"C1ORF150 WILD-TYPE" 
D42V5, multiclass
        clus
vv       C1ORF150 MUTATED C1ORF150 WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                1                107
  CLUS_3                2                 77
D42V6, multiclass
        clus
vv       C1ORF150 MUTATED C1ORF150 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                0                 20
  CLUS_3                1                 24
  CLUS_4                0                 26
D42V7, multiclass
        clus
vv       C1ORF150 MUTATED C1ORF150 WILD-TYPE
  CLUS_1                1                 40
  CLUS_2                1                 37
  CLUS_3                1                 30
  CLUS_4                0                 33
D42V8, multiclass
        clus
vv       C1ORF150 MUTATED C1ORF150 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                1                 27
  CLUS_3                1                 67
D42V9, multiclass
[1] "Remove cluster labels:" "C1ORF150 MUTATED"      
clus
  C1ORF150 MUTATED C1ORF150 WILD-TYPE 
                 1                140 
        TCGA-02-0047         TCGA-02-0055         TCGA-02-2483 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0129 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0141 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0168 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0219         TCGA-06-0238         TCGA-06-0644 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0649 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0878         TCGA-06-0882 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-1804         TCGA-06-2557         TCGA-06-2558 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2569         TCGA-06-2570 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5417         TCGA-06-5418 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-08-0386         TCGA-12-0616         TCGA-12-0618 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0821         TCGA-12-1597 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-3650         TCGA-12-3652         TCGA-12-3653 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-14-0781 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0787         TCGA-14-0789         TCGA-14-0790 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0817         TCGA-14-1823         TCGA-14-1825 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-15-0742 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-15-1444         TCGA-16-0846         TCGA-16-1045 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-1390         TCGA-19-2619         TCGA-19-2620 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5136         TCGA-26-5139         TCGA-27-1830 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1834 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1835         TCGA-27-1837         TCGA-27-2519 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2521         TCGA-27-2523         TCGA-27-2524 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2526         TCGA-27-2528         TCGA-28-1747 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-1753         TCGA-28-2499         TCGA-28-2509 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-2510         TCGA-28-2513         TCGA-28-2514 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5213         TCGA-28-5215 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5220 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1980         TCGA-32-1982 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2615         TCGA-32-2632         TCGA-32-2634 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4213         TCGA-32-5222 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-3915 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-4097         TCGA-41-5651         TCGA-76-4925 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4927         TCGA-76-4928 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4932 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
D42V10, multiclass
[1] "Remove cluster labels:" "C1ORF150 MUTATED"      
clus
  C1ORF150 MUTATED C1ORF150 WILD-TYPE 
                 1                140 
        TCGA-02-0047         TCGA-02-0055         TCGA-02-2483 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0129 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0141 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0168 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0219         TCGA-06-0238         TCGA-06-0644 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0649 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0878         TCGA-06-0882 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-1804         TCGA-06-2557         TCGA-06-2558 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2569         TCGA-06-2570 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5417         TCGA-06-5418 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-08-0386         TCGA-12-0616         TCGA-12-0618 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0821         TCGA-12-1597 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-3650         TCGA-12-3652         TCGA-12-3653 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-14-0781 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0787         TCGA-14-0789         TCGA-14-0790 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-0817         TCGA-14-1823         TCGA-14-1825 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-15-0742 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-15-1444         TCGA-16-0846         TCGA-16-1045 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-1390         TCGA-19-2619         TCGA-19-2620 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-26-5136         TCGA-26-5139         TCGA-27-1830 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1834 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-1835         TCGA-27-1837         TCGA-27-2519 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2521         TCGA-27-2523         TCGA-27-2524 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-27-2526         TCGA-27-2528         TCGA-28-1747 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-1753         TCGA-28-2499         TCGA-28-2509 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-2510         TCGA-28-2513         TCGA-28-2514 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5213         TCGA-28-5215 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5220 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1980         TCGA-32-1982 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2615         TCGA-32-2632         TCGA-32-2634 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4213         TCGA-32-5222 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-3915 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-41-4097         TCGA-41-5651         TCGA-76-4925 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4927         TCGA-76-4928 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4932 
"C1ORF150 WILD-TYPE" "C1ORF150 WILD-TYPE" 

Clustering(43) Variable = LRRC55 MUTATION ANALYSIS
D43V1, multiclass
        clus
vv       LRRC55 MUTATED LRRC55 WILD-TYPE
  CLUS_1              0               76
  CLUS_2              2               83
  CLUS_3              3               77
D43V2, multiclass
        clus
vv       LRRC55 MUTATED LRRC55 WILD-TYPE
  CLUS_1              1              102
  CLUS_2              1               58
  CLUS_3              3               76
D43V3, multiclass
        clus
vv       LRRC55 MUTATED LRRC55 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              3               69
  CLUS_3              0               30
  CLUS_4              0               44
D43V4, multiclass
        clus
vv       LRRC55 MUTATED LRRC55 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              4               77
  CLUS_3              1               48
D43V5, multiclass
        clus
vv       LRRC55 MUTATED LRRC55 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              3              105
  CLUS_3              0               79
D43V6, multiclass
[1] "Remove cluster labels:" "LRRC55 MUTATED"        
clus
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               2              106 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-06-6388       TCGA-06-6389 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6390       TCGA-06-6391       TCGA-06-6693       TCGA-06-6694 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6695       TCGA-06-6697       TCGA-06-6698       TCGA-06-6699 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6700       TCGA-06-6701       TCGA-12-5295       TCGA-12-5299 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0862 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-1043       TCGA-14-1395       TCGA-15-1444       TCGA-19-5947 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-5950       TCGA-19-5951       TCGA-19-5952       TCGA-19-5953 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-5954       TCGA-19-5955       TCGA-19-5958       TCGA-19-5959 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-5135       TCGA-26-5136       TCGA-26-5139 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-28-2501       TCGA-28-2510 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1979       TCGA-32-1980       TCGA-32-5222 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4925 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4928       TCGA-76-4929 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-4931       TCGA-76-4932       TCGA-76-4934       TCGA-76-4935 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-6191       TCGA-76-6192       TCGA-76-6193       TCGA-76-6280 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6283       TCGA-76-6285       TCGA-76-6286 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-6656       TCGA-76-6657       TCGA-76-6660       TCGA-76-6661 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
D43V7, multiclass
[1] "Remove cluster labels:" "LRRC55 MUTATED"        
clus
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5415 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5859       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6701       TCGA-08-0386       TCGA-12-0692       TCGA-12-1597 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-3649       TCGA-12-3650       TCGA-12-3652       TCGA-12-3653 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-5295       TCGA-12-5301       TCGA-14-0813       TCGA-14-0862 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1823       TCGA-16-0846       TCGA-19-1390 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2625 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5953       TCGA-19-5954 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-5955       TCGA-19-5958       TCGA-19-5959       TCGA-19-5960 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-27-1830       TCGA-27-1831 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1833       TCGA-27-1834       TCGA-27-1836 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-2518       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-5208       TCGA-28-5214       TCGA-32-1970 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-1991       TCGA-32-4210 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-5222       TCGA-41-2573       TCGA-41-2575 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-81-5910 
"LRRC55 WILD-TYPE" 
D43V8, multiclass
[1] "Remove cluster labels:" "LRRC55 MUTATED"        
clus
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5415 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5859       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-6701       TCGA-08-0386       TCGA-12-0692       TCGA-12-1597 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-3649       TCGA-12-3650       TCGA-12-3652       TCGA-12-3653 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-5295       TCGA-12-5301       TCGA-14-0813       TCGA-14-0862 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1823       TCGA-16-0846       TCGA-19-1390 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2625 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5953       TCGA-19-5954 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-5955       TCGA-19-5958       TCGA-19-5959       TCGA-19-5960 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-27-1830       TCGA-27-1831 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1833       TCGA-27-1834       TCGA-27-1836 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-2518       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-5208       TCGA-28-5214       TCGA-32-1970 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-1991       TCGA-32-4210 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-5222       TCGA-41-2573       TCGA-41-2575 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-81-5910 
"LRRC55 WILD-TYPE" 
D43V9, multiclass
[1] "Remove cluster labels:" "LRRC55 MUTATED"        
clus
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               1              140 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5415 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5859       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0821       TCGA-12-1597       TCGA-12-3650 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-2554       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2528       TCGA-28-1747 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2499       TCGA-28-2509       TCGA-28-2510 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5215 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5220       TCGA-32-1970 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-2615       TCGA-32-2632 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
D43V10, multiclass
[1] "Remove cluster labels:" "LRRC55 MUTATED"        
clus
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               1              140 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5415 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-06-5859       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0821       TCGA-12-1597       TCGA-12-3650 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-14-2554       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2528       TCGA-28-1747 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2499       TCGA-28-2509       TCGA-28-2510 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5215 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5220       TCGA-32-1970 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-2615       TCGA-32-2632 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 

Clustering(44) Variable = DCAF12L2 MUTATION ANALYSIS
D44V1, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                 74
  CLUS_2                2                 83
  CLUS_3                1                 79
D44V2, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                101
  CLUS_2                1                 58
  CLUS_3                2                 77
D44V3, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                1                 56
  CLUS_2                1                 71
  CLUS_3                0                 30
  CLUS_4                2                 42
D44V4, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                 71
  CLUS_2                2                 79
  CLUS_3                0                 49
D44V5, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                3                105
  CLUS_3                4                 75
D44V6, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                0                 20
  CLUS_3                0                 25
  CLUS_4                1                 25
D44V7, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                 39
  CLUS_2                0                 38
  CLUS_3                1                 30
  CLUS_4                2                 31
D44V8, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                1                 27
  CLUS_3                2                 66
D44V9, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                1                 61
  CLUS_3                2                 33
D44V10, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                 59
  CLUS_2                0                 21
  CLUS_3                2                 57

Clustering(45) Variable = LRFN5 MUTATION ANALYSIS
D45V1, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             2              83
  CLUS_3             3              77
D45V2, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             4              99
  CLUS_2             2              57
  CLUS_3             1              78
D45V3, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             3              69
  CLUS_3             0              30
  CLUS_4             1              43
D45V4, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              79
  CLUS_3             1              48
D45V5, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3             105
  CLUS_3             2              77
D45V6, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              20
  CLUS_3             1              24
  CLUS_4             2              24
D45V7, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             0              38
  CLUS_3             0              31
  CLUS_4             2              31
D45V8, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              27
  CLUS_3             2              66
D45V9, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             2              60
  CLUS_3             1              34
D45V10, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             0              21
  CLUS_3             2              57

Clustering(46) Variable = LUM MUTATION ANALYSIS
D46V1, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           1            75
  CLUS_2           0            85
  CLUS_3           2            78
D46V2, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           2           101
  CLUS_2           1            58
  CLUS_3           0            79
D46V3, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           0            57
  CLUS_2           1            71
  CLUS_3           1            29
  CLUS_4           1            43
D46V4, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           1            72
  CLUS_2           1            80
  CLUS_3           1            48
D46V5, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           0            87
  CLUS_2           3           105
  CLUS_3           2            77
D46V6, multiclass
[1] "Remove cluster labels:" "LUM MUTATED"           
clus
  LUM MUTATED LUM WILD-TYPE 
            2           106 
   TCGA-06-0650    TCGA-06-1804    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-06-6388 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693    TCGA-06-6694 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699    TCGA-06-6700 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-6701    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301    TCGA-14-0740 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0862    TCGA-14-1043    TCGA-14-1395    TCGA-14-1450 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-15-1444    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-2501    TCGA-28-2510    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-5209    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215    TCGA-28-5216 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450    TCGA-32-1979 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-32-1980    TCGA-32-5222    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4925 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191    TCGA-76-6192 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6283    TCGA-76-6285 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6660    TCGA-76-6661 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-6662    TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-87-5896 
"LUM WILD-TYPE" 
D46V7, multiclass
[1] "Remove cluster labels:" "LUM MUTATED"           
clus
  LUM MUTATED LUM WILD-TYPE 
            2           141 
   TCGA-02-0003    TCGA-02-2470    TCGA-02-2485    TCGA-06-0128    TCGA-06-0129 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0130    TCGA-06-0154    TCGA-06-0155    TCGA-06-0189    TCGA-06-0238 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0650    TCGA-06-0875    TCGA-06-0876    TCGA-06-0877 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0878    TCGA-06-0879    TCGA-06-0882    TCGA-06-0939    TCGA-06-1804 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2562    TCGA-06-2563 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2570    TCGA-06-5408 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5859    TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386    TCGA-12-0692 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-12-5295    TCGA-12-5301    TCGA-14-0813    TCGA-14-0862    TCGA-14-0871 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-14-1823    TCGA-16-0846    TCGA-19-1390    TCGA-19-1790    TCGA-19-2619 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2625    TCGA-19-2631    TCGA-19-4068    TCGA-19-5947 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953    TCGA-19-5954 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960    TCGA-26-1442 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-6173    TCGA-26-6174 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-27-1836    TCGA-27-2518    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-2501    TCGA-28-5208    TCGA-28-5214    TCGA-32-1970    TCGA-32-1982 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-32-1986    TCGA-32-1991    TCGA-32-4210    TCGA-32-4211    TCGA-32-5222 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393    TCGA-41-3915 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573    TCGA-74-6575 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4926    TCGA-76-4927 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932    TCGA-76-6192 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-6193    TCGA-76-6282    TCGA-76-6283    TCGA-76-6285    TCGA-76-6656 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-6657    TCGA-76-6660    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-81-5910 
"LUM WILD-TYPE" 
D46V8, multiclass
[1] "Remove cluster labels:" "LUM MUTATED"           
clus
  LUM MUTATED LUM WILD-TYPE 
            2           141 
   TCGA-02-0003    TCGA-02-2470    TCGA-02-2485    TCGA-06-0128    TCGA-06-0129 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0130    TCGA-06-0154    TCGA-06-0155    TCGA-06-0189    TCGA-06-0238 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0650    TCGA-06-0875    TCGA-06-0876    TCGA-06-0877 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0878    TCGA-06-0879    TCGA-06-0882    TCGA-06-0939    TCGA-06-1804 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2562    TCGA-06-2563 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2570    TCGA-06-5408 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5859    TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386    TCGA-12-0692 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-12-5295    TCGA-12-5301    TCGA-14-0813    TCGA-14-0862    TCGA-14-0871 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-14-1823    TCGA-16-0846    TCGA-19-1390    TCGA-19-1790    TCGA-19-2619 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2625    TCGA-19-2631    TCGA-19-4068    TCGA-19-5947 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953    TCGA-19-5954 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960    TCGA-26-1442 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-6173    TCGA-26-6174 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-27-1836    TCGA-27-2518    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-2501    TCGA-28-5208    TCGA-28-5214    TCGA-32-1970    TCGA-32-1982 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-32-1986    TCGA-32-1991    TCGA-32-4210    TCGA-32-4211    TCGA-32-5222 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393    TCGA-41-3915 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573    TCGA-74-6575 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4926    TCGA-76-4927 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932    TCGA-76-6192 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-6193    TCGA-76-6282    TCGA-76-6283    TCGA-76-6285    TCGA-76-6656 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-6657    TCGA-76-6660    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-81-5910 
"LUM WILD-TYPE" 
D46V9, multiclass
[1] "Remove cluster labels:" "LUM MUTATED"           
clus
  LUM MUTATED LUM WILD-TYPE 
            1           140 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-14-1823    TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-15-1444    TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-27-2523    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513    TCGA-28-2514 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
D46V10, multiclass
[1] "Remove cluster labels:" "LUM MUTATED"           
clus
  LUM MUTATED LUM WILD-TYPE 
            1           140 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-14-1823    TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-15-1444    TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-27-2523    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513    TCGA-28-2514 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 

Clustering(47) Variable = MMP13 MUTATION ANALYSIS
D47V1, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             1              84
  CLUS_3             2              78
D47V2, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             2              57
  CLUS_3             1              78
D47V3, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             1              71
  CLUS_3             0              30
  CLUS_4             1              43
D47V4, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             3              78
  CLUS_3             0              49
D47V5, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3             105
  CLUS_3             1              78
D47V6, multiclass
[1] "Remove cluster labels:" "MMP13 MUTATED"         
clus
  MMP13 MUTATED MMP13 WILD-TYPE 
              2             106 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-12-5295      TCGA-12-5299 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0862 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-14-1043      TCGA-14-1395      TCGA-14-1450      TCGA-15-1444 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5135      TCGA-26-5136 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-28-2501 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-28-2510      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-4934      TCGA-76-4935 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-76-6191      TCGA-76-6192      TCGA-76-6193      TCGA-76-6280 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6286 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-76-6656      TCGA-76-6657      TCGA-76-6660      TCGA-76-6661 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
     TCGA-81-5911      TCGA-87-5896 
"MMP13 WILD-TYPE" "MMP13 WILD-TYPE" 
D47V7, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             0              38
  CLUS_3             2              29
  CLUS_4             0              33
D47V8, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              27
  CLUS_3             0              68
D47V9, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             3              59
  CLUS_3             0              35
D47V10, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             1              20
  CLUS_3             0              59

Clustering(48) Variable = HEATR7B2 MUTATION ANALYSIS
D48V1, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                1                 75
  CLUS_2                3                 82
  CLUS_3                6                 74
D48V2, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                3                100
  CLUS_2                3                 56
  CLUS_3                4                 75
D48V3, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                2                 55
  CLUS_2                4                 68
  CLUS_3                2                 28
  CLUS_4                0                 44
D48V4, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                1                 72
  CLUS_2                5                 76
  CLUS_3                2                 47
D48V5, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                4                104
  CLUS_3                2                 77
D48V6, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                2                 18
  CLUS_3                0                 25
  CLUS_4                1                 25
D48V7, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                1                 40
  CLUS_2                3                 35
  CLUS_3                1                 30
  CLUS_4                0                 33
D48V8, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                1                 27
  CLUS_3                3                 65
D48V9, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                2                 60
  CLUS_3                2                 33
D48V10, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                2                 59
  CLUS_2                1                 20
  CLUS_3                2                 57

Clustering(49) Variable = UGT2B28 MUTATION ANALYSIS
D49V1, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               2                74
  CLUS_2               2                83
  CLUS_3               2                78
D49V2, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               3               100
  CLUS_2               2                57
  CLUS_3               1                78
D49V3, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               1                56
  CLUS_2               2                70
  CLUS_3               1                29
  CLUS_4               1                43
D49V4, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               1                72
  CLUS_2               1                80
  CLUS_3               3                46
D49V5, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               4               104
  CLUS_3               1                78
D49V6, multiclass
[1] "Remove cluster labels:" "UGT2B28 MUTATED"       
clus
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
                1               107 
       TCGA-06-0650        TCGA-06-1804        TCGA-06-1806        TCGA-06-5408 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5417        TCGA-06-5418 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-12-5295 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-5299        TCGA-12-5301        TCGA-14-0740        TCGA-14-0781 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-14-0862        TCGA-14-1043        TCGA-14-1395        TCGA-14-1450 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-15-1444        TCGA-19-5947        TCGA-19-5950        TCGA-19-5951 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-5952        TCGA-19-5953        TCGA-19-5954        TCGA-19-5955 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-5958        TCGA-19-5959        TCGA-19-5960        TCGA-26-1442 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-2501        TCGA-28-2510        TCGA-28-5204        TCGA-28-5207 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5209        TCGA-28-5211        TCGA-28-5213 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-5214        TCGA-28-5215        TCGA-28-5216        TCGA-28-5218 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-5219        TCGA-28-5220        TCGA-28-6450        TCGA-32-1980 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-5222        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6584 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4925        TCGA-76-4926        TCGA-76-4927        TCGA-76-4928 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4932        TCGA-76-4934 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6283        TCGA-76-6285 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-6286        TCGA-76-6656        TCGA-76-6657        TCGA-76-6660 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-6661        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
D49V7, multiclass
[1] "Remove cluster labels:" "UGT2B28 MUTATED"       
clus
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
                2               141 
       TCGA-02-2470        TCGA-02-2485        TCGA-06-0128        TCGA-06-0129 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0130        TCGA-06-0154        TCGA-06-0155        TCGA-06-0189 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0644        TCGA-06-0650        TCGA-06-0875 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0882        TCGA-06-0939        TCGA-06-1804        TCGA-06-1806 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2562 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2567 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2570        TCGA-06-5408        TCGA-06-5410        TCGA-06-5411 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5412        TCGA-06-5413        TCGA-06-5414        TCGA-06-5415 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5417        TCGA-06-5418        TCGA-06-5856        TCGA-06-5858 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5859        TCGA-06-6388        TCGA-06-6389        TCGA-06-6390 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6391        TCGA-06-6693        TCGA-06-6694        TCGA-06-6695 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6697        TCGA-06-6698        TCGA-06-6699        TCGA-06-6700 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6701        TCGA-08-0386        TCGA-12-0692        TCGA-12-1597 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3652        TCGA-12-3653 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-5295        TCGA-12-5301        TCGA-14-0813        TCGA-14-0862 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1823        TCGA-16-0846        TCGA-19-1390 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-1790        TCGA-19-2619        TCGA-19-2620        TCGA-19-2625 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4068        TCGA-19-5947        TCGA-19-5950 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5958        TCGA-19-5959        TCGA-19-5960 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-26-1442        TCGA-26-5132        TCGA-26-5133        TCGA-26-5134 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-26-6173        TCGA-26-6174        TCGA-27-1830        TCGA-27-1831 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-1832        TCGA-27-1833        TCGA-27-1834        TCGA-27-1836 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2528        TCGA-28-1747        TCGA-28-1753 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-2501        TCGA-28-5208        TCGA-28-5214        TCGA-32-1970 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1991        TCGA-32-4210 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-4211        TCGA-32-5222        TCGA-41-2573        TCGA-41-2575 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-41-3392        TCGA-41-3393        TCGA-41-3915        TCGA-41-4097 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-41-5651        TCGA-41-6646        TCGA-74-6573        TCGA-74-6575 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-74-6577        TCGA-74-6578        TCGA-74-6584        TCGA-76-4926 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4927        TCGA-76-4928        TCGA-76-4929        TCGA-76-4931 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4932        TCGA-76-6192        TCGA-76-6193        TCGA-76-6282 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-6283        TCGA-76-6285        TCGA-76-6656        TCGA-76-6657 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-6660        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-81-5910 
"UGT2B28 WILD-TYPE" 
D49V8, multiclass
[1] "Remove cluster labels:" "UGT2B28 MUTATED"       
clus
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
                2               141 
       TCGA-02-2470        TCGA-02-2485        TCGA-06-0128        TCGA-06-0129 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0130        TCGA-06-0154        TCGA-06-0155        TCGA-06-0189 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0644        TCGA-06-0650        TCGA-06-0875 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0882        TCGA-06-0939        TCGA-06-1804        TCGA-06-1806 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2562 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2567 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2570        TCGA-06-5408        TCGA-06-5410        TCGA-06-5411 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5412        TCGA-06-5413        TCGA-06-5414        TCGA-06-5415 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5417        TCGA-06-5418        TCGA-06-5856        TCGA-06-5858 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5859        TCGA-06-6388        TCGA-06-6389        TCGA-06-6390 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6391        TCGA-06-6693        TCGA-06-6694        TCGA-06-6695 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6697        TCGA-06-6698        TCGA-06-6699        TCGA-06-6700 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-6701        TCGA-08-0386        TCGA-12-0692        TCGA-12-1597 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3652        TCGA-12-3653 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-5295        TCGA-12-5301        TCGA-14-0813        TCGA-14-0862 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1823        TCGA-16-0846        TCGA-19-1390 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-1790        TCGA-19-2619        TCGA-19-2620        TCGA-19-2625 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4068        TCGA-19-5947        TCGA-19-5950 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5958        TCGA-19-5959        TCGA-19-5960 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-26-1442        TCGA-26-5132        TCGA-26-5133        TCGA-26-5134 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-26-6173        TCGA-26-6174        TCGA-27-1830        TCGA-27-1831 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-1832        TCGA-27-1833        TCGA-27-1834        TCGA-27-1836 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2528        TCGA-28-1747        TCGA-28-1753 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-2501        TCGA-28-5208        TCGA-28-5214        TCGA-32-1970 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1991        TCGA-32-4210 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-4211        TCGA-32-5222        TCGA-41-2573        TCGA-41-2575 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-41-3392        TCGA-41-3393        TCGA-41-3915        TCGA-41-4097 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-41-5651        TCGA-41-6646        TCGA-74-6573        TCGA-74-6575 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-74-6577        TCGA-74-6578        TCGA-74-6584        TCGA-76-4926 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4927        TCGA-76-4928        TCGA-76-4929        TCGA-76-4931 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4932        TCGA-76-6192        TCGA-76-6193        TCGA-76-6282 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-6283        TCGA-76-6285        TCGA-76-6656        TCGA-76-6657 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-6660        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-81-5910 
"UGT2B28 WILD-TYPE" 
D49V9, multiclass
[1] "Remove cluster labels:" "UGT2B28 MUTATED"       
clus
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
                1               140 
       TCGA-02-0047        TCGA-02-0055        TCGA-02-2483        TCGA-02-2485 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-02-2486        TCGA-06-0129        TCGA-06-0130        TCGA-06-0132 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0141        TCGA-06-0157        TCGA-06-0158        TCGA-06-0168 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0178        TCGA-06-0184        TCGA-06-0219 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0644        TCGA-06-0645        TCGA-06-0646 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0649        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0878        TCGA-06-0882        TCGA-06-1804        TCGA-06-2557 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2567 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2569        TCGA-06-2570        TCGA-06-5408        TCGA-06-5410 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5411        TCGA-06-5412        TCGA-06-5413        TCGA-06-5414 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5415        TCGA-06-5417        TCGA-06-5418        TCGA-06-5856 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5858        TCGA-06-5859        TCGA-08-0386        TCGA-12-0616 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0821        TCGA-12-1597 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-3650        TCGA-12-3652        TCGA-12-3653        TCGA-12-5295 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-5299        TCGA-14-0781        TCGA-14-0787        TCGA-14-0789 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0817        TCGA-14-1823        TCGA-14-1825 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-14-1829        TCGA-14-2554        TCGA-15-0742        TCGA-15-1444 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-16-0846        TCGA-16-1045        TCGA-19-1390        TCGA-19-2619 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-2620        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1442        TCGA-26-5132        TCGA-26-5133 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-26-5134        TCGA-26-5135        TCGA-26-5136        TCGA-26-5139 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1834 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-1835        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2528        TCGA-28-1747 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-1753        TCGA-28-2499        TCGA-28-2509        TCGA-28-2510 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-2513        TCGA-28-2514        TCGA-28-5204        TCGA-28-5207 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5209        TCGA-28-5213        TCGA-28-5215 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5220        TCGA-32-1970 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-1980        TCGA-32-1982        TCGA-32-2615        TCGA-32-2632 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-2634        TCGA-32-2638        TCGA-32-4213        TCGA-32-5222 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-41-2571        TCGA-41-2572        TCGA-41-3915        TCGA-41-4097 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-41-5651        TCGA-76-4925        TCGA-76-4926        TCGA-76-4927 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4932 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
D49V10, multiclass
[1] "Remove cluster labels:" "UGT2B28 MUTATED"       
clus
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
                1               140 
       TCGA-02-0047        TCGA-02-0055        TCGA-02-2483        TCGA-02-2485 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-02-2486        TCGA-06-0129        TCGA-06-0130        TCGA-06-0132 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0141        TCGA-06-0157        TCGA-06-0158        TCGA-06-0168 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0178        TCGA-06-0184        TCGA-06-0219 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0644        TCGA-06-0645        TCGA-06-0646 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0649        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-0878        TCGA-06-0882        TCGA-06-1804        TCGA-06-2557 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2567 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-2569        TCGA-06-2570        TCGA-06-5408        TCGA-06-5410 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5411        TCGA-06-5412        TCGA-06-5413        TCGA-06-5414 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5415        TCGA-06-5417        TCGA-06-5418        TCGA-06-5856 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-06-5858        TCGA-06-5859        TCGA-08-0386        TCGA-12-0616 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0821        TCGA-12-1597 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-3650        TCGA-12-3652        TCGA-12-3653        TCGA-12-5295 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-12-5299        TCGA-14-0781        TCGA-14-0787        TCGA-14-0789 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0817        TCGA-14-1823        TCGA-14-1825 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-14-1829        TCGA-14-2554        TCGA-15-0742        TCGA-15-1444 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-16-0846        TCGA-16-1045        TCGA-19-1390        TCGA-19-2619 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-2620        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1442        TCGA-26-5132        TCGA-26-5133 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-26-5134        TCGA-26-5135        TCGA-26-5136        TCGA-26-5139 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1834 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-1835        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2528        TCGA-28-1747 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-1753        TCGA-28-2499        TCGA-28-2509        TCGA-28-2510 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-2513        TCGA-28-2514        TCGA-28-5204        TCGA-28-5207 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5209        TCGA-28-5213        TCGA-28-5215 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5220        TCGA-32-1970 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-1980        TCGA-32-1982        TCGA-32-2615        TCGA-32-2632 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-32-2634        TCGA-32-2638        TCGA-32-4213        TCGA-32-5222 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-41-2571        TCGA-41-2572        TCGA-41-3915        TCGA-41-4097 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-41-5651        TCGA-76-4925        TCGA-76-4926        TCGA-76-4927 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4932 
"UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" "UGT2B28 WILD-TYPE" 

Clustering(50) Variable = OR5D13 MUTATION ANALYSIS
D50V1, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              3               73
  CLUS_2              0               85
  CLUS_3              1               79
D50V2, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1               58
  CLUS_3              1               78
D50V3, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              0               57
  CLUS_2              1               71
  CLUS_3              1               29
  CLUS_4              2               42
D50V4, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              1               80
  CLUS_3              1               48
D50V5, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              3              105
  CLUS_3              2               77
D50V6, multiclass
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1              107 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0740       TCGA-14-0781 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-15-1444       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1442 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-2510       TCGA-28-5204       TCGA-28-5207 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5211       TCGA-28-5213 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-5214       TCGA-28-5215       TCGA-28-5216       TCGA-28-5218 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-5219       TCGA-28-5220       TCGA-28-6450       TCGA-32-1979 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-5222       TCGA-41-5651       TCGA-41-6646 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6283 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-76-6285       TCGA-76-6286       TCGA-76-6656       TCGA-76-6657 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6661       TCGA-76-6662       TCGA-76-6663 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-76-6664       TCGA-81-5910       TCGA-87-5896 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
D50V7, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2               39
  CLUS_2              0               38
  CLUS_3              1               30
  CLUS_4              0               33
D50V8, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              2               26
  CLUS_3              0               68
D50V9, multiclass
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1              140 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-08-0386       TCGA-12-0616 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0821       TCGA-12-1597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-12-5299       TCGA-14-0781       TCGA-14-0787       TCGA-14-0789 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0817       TCGA-14-1823       TCGA-14-1825 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-14-1829       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2528       TCGA-28-1747 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2499       TCGA-28-2509       TCGA-28-2510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5220       TCGA-32-1970 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-2615       TCGA-32-2632 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
D50V10, multiclass
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1              140 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-08-0386       TCGA-12-0616 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0821       TCGA-12-1597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-12-5299       TCGA-14-0781       TCGA-14-0787       TCGA-14-0789 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0817       TCGA-14-1823       TCGA-14-1825 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-14-1829       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2528       TCGA-28-1747 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2499       TCGA-28-2509       TCGA-28-2510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5220       TCGA-32-1970 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-2615       TCGA-32-2632 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 

Clustering(51) Variable = ZNF99 MUTATION ANALYSIS
D51V1, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             2              83
  CLUS_3             1              79
D51V2, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1              58
  CLUS_3             2              77
D51V3, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             0              72
  CLUS_3             1              29
  CLUS_4             1              43
D51V4, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              80
  CLUS_3             0              49
D51V5, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1             107
  CLUS_3             3              76
D51V6, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              20
  CLUS_3             0              25
  CLUS_4             2              24
D51V7, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             0              41
  CLUS_2             1              37
  CLUS_3             0              31
  CLUS_4             2              31
D51V8, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              28
  CLUS_3             3              65
D51V9, multiclass
[1] "Remove cluster labels:" "ZNF99 MUTATED"         
clus
  ZNF99 MUTATED ZNF99 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0745 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0882      TCGA-06-1804      TCGA-06-2557      TCGA-06-2558 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3650      TCGA-12-3652 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-14-0781 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0817 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
D51V10, multiclass
[1] "Remove cluster labels:" "ZNF99 MUTATED"         
clus
  ZNF99 MUTATED ZNF99 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0745 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-0882      TCGA-06-1804      TCGA-06-2557      TCGA-06-2558 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3650      TCGA-12-3652 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-14-0781 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0817 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 

Clustering(52) Variable = SLC5A7 MUTATION ANALYSIS
D52V1, multiclass
        clus
vv       SLC5A7 MUTATED SLC5A7 WILD-TYPE
  CLUS_1              4               72
  CLUS_2              2               83
  CLUS_3              0               80
D52V2, multiclass
        clus
vv       SLC5A7 MUTATED SLC5A7 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              0               59
  CLUS_3              4               75
D52V3, multiclass
        clus
vv       SLC5A7 MUTATED SLC5A7 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              0               72
  CLUS_3              1               29
  CLUS_4              1               43
D52V4, multiclass
        clus
vv       SLC5A7 MUTATED SLC5A7 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              1               80
  CLUS_3              1               48
D52V5, multiclass
        clus
vv       SLC5A7 MUTATED SLC5A7 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1              107
  CLUS_3              3               76
D52V6, multiclass
        clus
vv       SLC5A7 MUTATED SLC5A7 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               19
  CLUS_3              1               24
  CLUS_4              0               26
D52V7, multiclass
        clus
vv       SLC5A7 MUTATED SLC5A7 WILD-TYPE
  CLUS_1              2               39
  CLUS_2              1               37
  CLUS_3              0               31
  CLUS_4              2               31
D52V8, multiclass
        clus
vv       SLC5A7 MUTATED SLC5A7 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              2               26
  CLUS_3              1               67
D52V9, multiclass
[1] "Remove cluster labels:" "SLC5A7 MUTATED"        
clus
  SLC5A7 MUTATED SLC5A7 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-08-0386       TCGA-12-0616 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0821       TCGA-12-1597 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-12-5299       TCGA-14-0781       TCGA-14-0787       TCGA-14-0789 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0817       TCGA-14-1823       TCGA-14-1825 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-14-1829       TCGA-14-2554       TCGA-15-0742       TCGA-15-1444 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-16-0846       TCGA-16-1045       TCGA-19-1390       TCGA-19-2619 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2624       TCGA-19-2625       TCGA-19-2629 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-5135       TCGA-26-5136       TCGA-26-5139 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1834 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-27-1835       TCGA-27-1837       TCGA-27-2519       TCGA-27-2521 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2528 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-28-1747       TCGA-28-1753       TCGA-28-2499       TCGA-28-2509 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-28-2510       TCGA-28-2513       TCGA-28-2514       TCGA-28-5204 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-28-5207       TCGA-28-5208       TCGA-28-5209       TCGA-28-5213 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5220 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1980       TCGA-32-1982       TCGA-32-2615 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
D52V10, multiclass
[1] "Remove cluster labels:" "SLC5A7 MUTATED"        
clus
  SLC5A7 MUTATED SLC5A7 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-08-0386       TCGA-12-0616 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0821       TCGA-12-1597 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-12-5299       TCGA-14-0781       TCGA-14-0787       TCGA-14-0789 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0817       TCGA-14-1823       TCGA-14-1825 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-14-1829       TCGA-14-2554       TCGA-15-0742       TCGA-15-1444 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-16-0846       TCGA-16-1045       TCGA-19-1390       TCGA-19-2619 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2624       TCGA-19-2625       TCGA-19-2629 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-5135       TCGA-26-5136       TCGA-26-5139 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1834 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-27-1835       TCGA-27-1837       TCGA-27-2519       TCGA-27-2521 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2528 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-28-1747       TCGA-28-1753       TCGA-28-2499       TCGA-28-2509 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-28-2510       TCGA-28-2513       TCGA-28-2514       TCGA-28-5204 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-28-5207       TCGA-28-5208       TCGA-28-5209       TCGA-28-5213 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5220 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1980       TCGA-32-1982       TCGA-32-2615 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" "SLC5A7 WILD-TYPE" 

Clustering(53) Variable = SEMA3E MUTATION ANALYSIS
D53V1, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              3               73
  CLUS_2              0               85
  CLUS_3              2               78
D53V2, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              4               99
  CLUS_2              1               58
  CLUS_3              0               79
D53V3, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              3               54
  CLUS_2              1               71
  CLUS_3              0               30
  CLUS_4              1               43
D53V4, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              3               70
  CLUS_2              2               79
  CLUS_3              0               49
D53V5, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              2               85
  CLUS_2              3              105
  CLUS_3              3               76
D53V6, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              0               37
  CLUS_2              2               18
  CLUS_3              1               24
  CLUS_4              0               26
D53V7, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              0               41
  CLUS_2              0               38
  CLUS_3              3               28
  CLUS_4              0               33
D53V8, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               28
  CLUS_3              0               68
D53V9, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              0               44
  CLUS_2              3               59
  CLUS_3              0               35
D53V10, multiclass
        clus
vv       SEMA3E MUTATED SEMA3E WILD-TYPE
  CLUS_1              1               60
  CLUS_2              2               19
  CLUS_3              0               59

Clustering(54) Variable = TCHH MUTATION ANALYSIS
D54V1, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            6             70
  CLUS_2            2             83
  CLUS_3            4             76
D54V2, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            8             95
  CLUS_2            3             56
  CLUS_3            1             78
D54V3, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            5             52
  CLUS_2            4             68
  CLUS_3            0             30
  CLUS_4            2             42
D54V4, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            5             68
  CLUS_2            6             75
  CLUS_3            0             49
D54V5, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            7             80
  CLUS_2            5            103
  CLUS_3            3             76
D54V6, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            4             33
  CLUS_2            1             19
  CLUS_3            2             23
  CLUS_4            0             26
D54V7, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            3             38
  CLUS_2            1             37
  CLUS_3            0             31
  CLUS_4            1             32
D54V8, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            1             46
  CLUS_2            2             26
  CLUS_3            2             66
D54V9, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            1             43
  CLUS_2            6             56
  CLUS_3            1             34
D54V10, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            6             55
  CLUS_2            1             20
  CLUS_3            1             58

Clustering(55) Variable = SLC26A3 MUTATION ANALYSIS
D55V1, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               3                73
  CLUS_2               1                84
  CLUS_3               2                78
D55V2, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               2               101
  CLUS_2               2                57
  CLUS_3               2                77
D55V3, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               1                56
  CLUS_2               4                68
  CLUS_3               0                30
  CLUS_4               1                43
D55V4, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               2                79
  CLUS_3               2                47
D55V5, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               3               105
  CLUS_3               1                78
D55V6, multiclass
[1] "Remove cluster labels:" "SLC26A3 MUTATED"       
clus
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
                2               106 
       TCGA-06-0650        TCGA-06-1804        TCGA-06-1806        TCGA-06-5408 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5417        TCGA-06-5418 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-12-5295 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-12-5299        TCGA-12-5301        TCGA-14-0740        TCGA-14-0781 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-14-0862        TCGA-14-1043        TCGA-14-1395        TCGA-14-1450 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-15-1444        TCGA-19-5947        TCGA-19-5950        TCGA-19-5951 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-19-5952        TCGA-19-5953        TCGA-19-5954        TCGA-19-5955 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-19-5958        TCGA-19-5959        TCGA-19-5960        TCGA-26-1442 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-28-2501        TCGA-28-2510        TCGA-28-5204        TCGA-28-5207 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5209        TCGA-28-5211        TCGA-28-5213 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-28-5214        TCGA-28-5215        TCGA-28-5218        TCGA-28-5219 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-28-5220        TCGA-28-6450        TCGA-32-1979        TCGA-32-1980 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-32-5222        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6584 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-76-4925        TCGA-76-4926        TCGA-76-4927        TCGA-76-4928 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4932        TCGA-76-4934 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6283        TCGA-76-6285 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-76-6286        TCGA-76-6656        TCGA-76-6657        TCGA-76-6661 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-76-6662        TCGA-76-6663        TCGA-76-6664        TCGA-81-5910 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
       TCGA-81-5911        TCGA-87-5896 
"SLC26A3 WILD-TYPE" "SLC26A3 WILD-TYPE" 
D55V7, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               3                38
  CLUS_2               0                38
  CLUS_3               1                30
  CLUS_4               0                33
D55V8, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               3                25
  CLUS_3               0                68
D55V9, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               0                62
  CLUS_3               2                33
D55V10, multiclass
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  CLUS_1               0                61
  CLUS_2               1                20
  CLUS_3               3                56

Clustering(56) Variable = GABRB2 MUTATION ANALYSIS
D56V1, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              2               83
  CLUS_3              3               77
D56V2, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              5               98
  CLUS_2              1               58
  CLUS_3              0               79
D56V3, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              4               53
  CLUS_2              1               71
  CLUS_3              0               30
  CLUS_4              0               44
D56V4, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              2               79
  CLUS_3              1               48
D56V5, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              5              103
  CLUS_3              0               79
D56V6, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              0               20
  CLUS_3              2               23
  CLUS_4              2               24
D56V7, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              0               41
  CLUS_2              0               38
  CLUS_3              0               31
  CLUS_4              3               30
D56V8, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              0               28
  CLUS_3              3               65
D56V9, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              3               59
  CLUS_3              0               35
D56V10, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              0               21
  CLUS_3              0               59

Clustering(57) Variable = CFHR4 MUTATION ANALYSIS
D57V1, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             1              84
  CLUS_3             2              78
D57V2, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             3             100
  CLUS_2             1              58
  CLUS_3             1              78
D57V3, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             1              71
  CLUS_3             0              30
  CLUS_4             1              43
D57V4, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             2              79
  CLUS_3             0              49
D57V5, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1             107
  CLUS_3             1              78
D57V6, multiclass
[1] "Remove cluster labels:" "CFHR4 MUTATED"         
clus
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-5132 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5135      TCGA-26-5136 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-28-2501 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-28-2510      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
D57V7, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             0              41
  CLUS_2             1              37
  CLUS_3             1              30
  CLUS_4             2              31
D57V8, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              27
  CLUS_3             2              66
D57V9, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             2              60
  CLUS_3             1              34
D57V10, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             0              21
  CLUS_3             1              58

Clustering(58) Variable = IL18RAP MUTATION ANALYSIS
D58V1, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               0                76
  CLUS_2               2                83
  CLUS_3               3                77
D58V2, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               0               103
  CLUS_2               3                56
  CLUS_3               2                77
D58V3, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               0                57
  CLUS_2               3                69
  CLUS_3               0                30
  CLUS_4               0                44
D58V4, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               0                73
  CLUS_2               3                78
  CLUS_3               0                49
D58V5, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               2                85
  CLUS_2               3               105
  CLUS_3               1                78
D58V6, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               0                37
  CLUS_2               1                19
  CLUS_3               0                25
  CLUS_4               2                24
D58V7, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               0                41
  CLUS_2               2                36
  CLUS_3               1                30
  CLUS_4               1                32
D58V8, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                28
  CLUS_3               3                65
D58V9, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               2                42
  CLUS_2               1                61
  CLUS_3               0                35
D58V10, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               1                60
  CLUS_2               0                21
  CLUS_3               2                57

Clustering(59) Variable = OGDH MUTATION ANALYSIS
D59V1, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            1             75
  CLUS_2            1             84
  CLUS_3            1             79
D59V2, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            2            101
  CLUS_2            0             59
  CLUS_3            1             78
D59V3, multiclass
[1] "Remove cluster labels:" "OGDH MUTATED"          
clus
  OGDH MUTATED OGDH WILD-TYPE 
             2            201 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0122     TCGA-06-0124     TCGA-06-0126     TCGA-06-0128 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0137     TCGA-06-0139 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0142     TCGA-06-0145     TCGA-06-0151 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0152     TCGA-06-0154     TCGA-06-0155     TCGA-06-0157 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0158     TCGA-06-0166     TCGA-06-0168     TCGA-06-0169 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0173     TCGA-06-0174     TCGA-06-0178     TCGA-06-0184 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0185     TCGA-06-0188     TCGA-06-0189     TCGA-06-0192 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0195     TCGA-06-0213     TCGA-06-0214     TCGA-06-0216 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0219     TCGA-06-0237     TCGA-06-0238     TCGA-06-0240 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0241     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0648     TCGA-06-0649     TCGA-06-0686     TCGA-06-0743 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0744     TCGA-06-0745     TCGA-06-0747     TCGA-06-0749 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0881     TCGA-06-0882 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0939     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-08-0386 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-0616     TCGA-12-0618     TCGA-12-0619     TCGA-12-0688 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-0692     TCGA-12-0821     TCGA-12-1597     TCGA-12-3649 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-3650     TCGA-12-3652     TCGA-12-3653     TCGA-12-5295 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-5299     TCGA-12-5301     TCGA-14-0786     TCGA-14-0787 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-0789     TCGA-14-0790     TCGA-14-0813     TCGA-14-0817 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1456     TCGA-14-1823     TCGA-14-1825 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-1829     TCGA-14-2554     TCGA-14-3476     TCGA-14-4157 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-15-0742     TCGA-16-0846     TCGA-16-0861     TCGA-16-1045 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-16-1048     TCGA-19-1390     TCGA-19-1790     TCGA-19-2619 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-2620     TCGA-19-2623     TCGA-19-2624     TCGA-19-2625 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-2629     TCGA-19-2631     TCGA-19-4068     TCGA-26-1439 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1833     TCGA-27-1834     TCGA-27-1835 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-1836     TCGA-27-1837     TCGA-27-1838     TCGA-27-2518 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2527     TCGA-27-2528     TCGA-28-1747 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1977     TCGA-32-1982     TCGA-32-1986 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-2498     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4208     TCGA-32-4209     TCGA-32-4210 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-4211     TCGA-32-4213     TCGA-32-4719     TCGA-32-5222 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2572     TCGA-41-2573     TCGA-41-2575 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4935 
"OGDH WILD-TYPE" 
D59V4, multiclass
[1] "Remove cluster labels:" "OGDH MUTATED"          
clus
  OGDH MUTATED OGDH WILD-TYPE 
             2            201 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0122     TCGA-06-0124     TCGA-06-0126     TCGA-06-0128 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0137     TCGA-06-0139 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0142     TCGA-06-0145     TCGA-06-0151 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0152     TCGA-06-0154     TCGA-06-0155     TCGA-06-0157 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0158     TCGA-06-0166     TCGA-06-0168     TCGA-06-0169 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0173     TCGA-06-0174     TCGA-06-0178     TCGA-06-0184 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0185     TCGA-06-0188     TCGA-06-0189     TCGA-06-0192 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0195     TCGA-06-0213     TCGA-06-0214     TCGA-06-0216 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0219     TCGA-06-0237     TCGA-06-0238     TCGA-06-0240 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0241     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0648     TCGA-06-0649     TCGA-06-0686     TCGA-06-0743 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0744     TCGA-06-0745     TCGA-06-0747     TCGA-06-0749 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0881     TCGA-06-0882 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0939     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-08-0386 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-0616     TCGA-12-0618     TCGA-12-0619     TCGA-12-0688 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-0692     TCGA-12-0821     TCGA-12-1597     TCGA-12-3649 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-3650     TCGA-12-3652     TCGA-12-3653     TCGA-12-5295 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-5299     TCGA-12-5301     TCGA-14-0786     TCGA-14-0787 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-0789     TCGA-14-0790     TCGA-14-0813     TCGA-14-0817 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1456     TCGA-14-1823     TCGA-14-1825 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-1829     TCGA-14-2554     TCGA-14-3476     TCGA-14-4157 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-15-0742     TCGA-16-0846     TCGA-16-0861     TCGA-16-1045 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-16-1048     TCGA-19-1390     TCGA-19-1790     TCGA-19-2619 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-2620     TCGA-19-2623     TCGA-19-2624     TCGA-19-2625 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-2629     TCGA-19-2631     TCGA-19-4068     TCGA-26-1439 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1833     TCGA-27-1834     TCGA-27-1835 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-1836     TCGA-27-1837     TCGA-27-1838     TCGA-27-2518 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2527     TCGA-27-2528     TCGA-28-1747 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1977     TCGA-32-1982     TCGA-32-1986 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-2498     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4208     TCGA-32-4209     TCGA-32-4210 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-4211     TCGA-32-4213     TCGA-32-4719     TCGA-32-5222 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2572     TCGA-41-2573     TCGA-41-2575 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4935 
"OGDH WILD-TYPE" 
D59V5, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1            107
  CLUS_3            1             78
D59V6, multiclass
[1] "Remove cluster labels:" "OGDH MUTATED"          
clus
  OGDH MUTATED OGDH WILD-TYPE 
             2            106 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5408 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5856 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5858     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6701     TCGA-12-5295     TCGA-12-5299     TCGA-12-5301 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-0740     TCGA-14-0781     TCGA-14-0862     TCGA-14-1043 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-15-1444     TCGA-19-5947 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-5950     TCGA-19-5951     TCGA-19-5952     TCGA-19-5953 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-5134     TCGA-26-5135     TCGA-26-5136     TCGA-26-5139 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-6173     TCGA-26-6174     TCGA-28-2501     TCGA-28-2510 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1979     TCGA-32-1980     TCGA-32-5222 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-5651     TCGA-41-6646     TCGA-74-6573     TCGA-74-6575 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4925 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6280 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6286 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6660     TCGA-76-6661 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" 
D59V7, multiclass
[1] "Remove cluster labels:" "OGDH MUTATED"          
clus
  OGDH MUTATED OGDH WILD-TYPE 
             2            141 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2570     TCGA-06-5408 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5856 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5858     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0692     TCGA-12-1597 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5301     TCGA-14-0813     TCGA-14-0862 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1823     TCGA-16-0846     TCGA-19-1390 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2625 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-2631     TCGA-19-4068     TCGA-19-5947     TCGA-19-5950 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-5951     TCGA-19-5952     TCGA-19-5953     TCGA-19-5954 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-5955     TCGA-19-5958     TCGA-19-5959     TCGA-19-5960 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-6173     TCGA-26-6174     TCGA-27-1830     TCGA-27-1831 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1833     TCGA-27-1834     TCGA-27-1836 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-2501     TCGA-28-5208     TCGA-28-5214     TCGA-32-1970 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-1991     TCGA-32-4210 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-4211     TCGA-32-5222     TCGA-41-2573     TCGA-41-2575 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-5651     TCGA-41-6646     TCGA-74-6573     TCGA-74-6575 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4926 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4932     TCGA-76-6192     TCGA-76-6193     TCGA-76-6282 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-6283     TCGA-76-6285     TCGA-76-6656     TCGA-76-6657 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-6660     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-81-5910 
"OGDH WILD-TYPE" 
D59V8, multiclass
[1] "Remove cluster labels:" "OGDH MUTATED"          
clus
  OGDH MUTATED OGDH WILD-TYPE 
             2            141 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2570     TCGA-06-5408 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5856 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-5858     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0692     TCGA-12-1597 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5301     TCGA-14-0813     TCGA-14-0862 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1823     TCGA-16-0846     TCGA-19-1390 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2625 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-2631     TCGA-19-4068     TCGA-19-5947     TCGA-19-5950 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-5951     TCGA-19-5952     TCGA-19-5953     TCGA-19-5954 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-19-5955     TCGA-19-5958     TCGA-19-5959     TCGA-19-5960 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-26-6173     TCGA-26-6174     TCGA-27-1830     TCGA-27-1831 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1833     TCGA-27-1834     TCGA-27-1836 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-28-2501     TCGA-28-5208     TCGA-28-5214     TCGA-32-1970 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-1991     TCGA-32-4210 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-32-4211     TCGA-32-5222     TCGA-41-2573     TCGA-41-2575 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-41-5651     TCGA-41-6646     TCGA-74-6573     TCGA-74-6575 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4926 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-4932     TCGA-76-6192     TCGA-76-6193     TCGA-76-6282 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-6283     TCGA-76-6285     TCGA-76-6656     TCGA-76-6657 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-76-6660     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" "OGDH WILD-TYPE" 
    TCGA-81-5910 
"OGDH WILD-TYPE" 
D59V9, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            1             43
  CLUS_2            2             60
  CLUS_3            0             35
D59V10, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            3             58
  CLUS_2            0             21
  CLUS_3            0             59

Clustering(60) Variable = PCDH11X MUTATION ANALYSIS
D60V1, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               1                75
  CLUS_2               4                81
  CLUS_3               3                77
D60V2, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               2               101
  CLUS_2               2                57
  CLUS_3               4                75
D60V3, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               2                55
  CLUS_2               3                69
  CLUS_3               3                27
  CLUS_4               0                44
D60V4, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               0                73
  CLUS_2               4                77
  CLUS_3               4                45
D60V5, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               6                81
  CLUS_2               2               106
  CLUS_3               1                78
D60V6, multiclass
[1] "Remove cluster labels:" "PCDH11X MUTATED"       
clus
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                1               107 
       TCGA-06-0650        TCGA-06-1804        TCGA-06-1806        TCGA-06-5408 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5417        TCGA-06-5418 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-12-5295 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-12-5299        TCGA-12-5301        TCGA-14-0740        TCGA-14-0781 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-14-0862        TCGA-14-1043        TCGA-14-1395        TCGA-14-1450 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-15-1444        TCGA-19-5947        TCGA-19-5950        TCGA-19-5951 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-19-5952        TCGA-19-5953        TCGA-19-5954        TCGA-19-5955 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-19-5958        TCGA-19-5959        TCGA-19-5960        TCGA-26-1442 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-28-2501        TCGA-28-2510        TCGA-28-5204        TCGA-28-5207 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5209        TCGA-28-5211        TCGA-28-5213 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-28-5214        TCGA-28-5215        TCGA-28-5216        TCGA-28-5218 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-28-5219        TCGA-28-5220        TCGA-28-6450        TCGA-32-1979 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-32-1980        TCGA-32-5222        TCGA-41-5651        TCGA-41-6646 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4927 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4932 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-76-4934        TCGA-76-4935        TCGA-76-6191        TCGA-76-6192 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-76-6193        TCGA-76-6280        TCGA-76-6282        TCGA-76-6285 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-76-6286        TCGA-76-6656        TCGA-76-6657        TCGA-76-6660 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-76-6661        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
D60V7, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               0                41
  CLUS_2               3                35
  CLUS_3               0                31
  CLUS_4               4                29
D60V8, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               0                47
  CLUS_2               0                28
  CLUS_3               7                61
D60V9, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               3                41
  CLUS_2               2                60
  CLUS_3               1                34
D60V10, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               1                60
  CLUS_2               1                20
  CLUS_3               4                55

Clustering(61) Variable = SPRYD5 MUTATION ANALYSIS
D61V1, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              3               82
  CLUS_3              2               78
D61V2, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              3              100
  CLUS_2              1               58
  CLUS_3              2               77
D61V3, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              0               57
  CLUS_2              2               70
  CLUS_3              1               29
  CLUS_4              3               41
D61V4, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              1               80
  CLUS_3              2               47
D61V5, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2              106
  CLUS_3              3               76
D61V6, multiclass
[1] "Remove cluster labels:" "SPRYD5 MUTATED"        
clus
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               1              107 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0740       TCGA-14-0781 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-15-1444       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1442 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-2510       TCGA-28-5204       TCGA-28-5207 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5211       TCGA-28-5213 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-28-5214       TCGA-28-5215       TCGA-28-5216       TCGA-28-5218 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-28-5219       TCGA-28-5220       TCGA-28-6450       TCGA-32-1979 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-5222       TCGA-41-5651       TCGA-41-6646 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-76-4935       TCGA-76-6191       TCGA-76-6192       TCGA-76-6193 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-76-6280       TCGA-76-6282       TCGA-76-6283       TCGA-76-6285 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6660 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
D61V7, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              1               40
  CLUS_2              1               37
  CLUS_3              0               31
  CLUS_4              1               32
D61V8, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              1               27
  CLUS_3              2               66
D61V9, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1               61
  CLUS_3              2               33
D61V10, multiclass
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              0               21
  CLUS_3              3               56

Clustering(62) Variable = TGFA MUTATION ANALYSIS
D62V1, multiclass
[1] "Remove cluster labels:" "TGFA MUTATED"          
clus
  TGFA MUTATED TGFA WILD-TYPE 
             2            239 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-2470 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-02-2483     TCGA-02-2485     TCGA-02-2486     TCGA-06-0122 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0124     TCGA-06-0126     TCGA-06-0128     TCGA-06-0129 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0130     TCGA-06-0132     TCGA-06-0137     TCGA-06-0139 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0152     TCGA-06-0154     TCGA-06-0155     TCGA-06-0157 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0158     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0749     TCGA-06-0750     TCGA-06-0875     TCGA-06-0876 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0877     TCGA-06-0878     TCGA-06-0879     TCGA-06-0881 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0882     TCGA-06-0939     TCGA-06-1804     TCGA-06-2557 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2558     TCGA-06-2559     TCGA-06-2561     TCGA-06-2562 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2563     TCGA-06-2564     TCGA-06-2565     TCGA-06-2567 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2569     TCGA-06-2570     TCGA-06-5408     TCGA-06-5410 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6389     TCGA-06-6390 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-6391     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5299     TCGA-12-5301 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0871 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-15-1444     TCGA-16-0846     TCGA-16-0861     TCGA-16-1045 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-16-1048     TCGA-19-1390     TCGA-19-1790     TCGA-19-2619 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2620     TCGA-19-2623     TCGA-19-2624     TCGA-19-2629 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2631     TCGA-19-4068     TCGA-19-5947     TCGA-19-5950 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-5951     TCGA-19-5952     TCGA-19-5954     TCGA-19-5955 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-27-1830 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1835     TCGA-27-1836     TCGA-27-1837     TCGA-27-1838 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2519     TCGA-27-2521     TCGA-27-2523 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2524     TCGA-27-2526     TCGA-27-2527     TCGA-27-2528 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-1747     TCGA-28-1753     TCGA-28-2501     TCGA-28-2502 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2509     TCGA-28-2510     TCGA-28-2513     TCGA-28-2514 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5213     TCGA-28-5214     TCGA-28-5215     TCGA-28-5216 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5219     TCGA-28-5220     TCGA-28-6450 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1977     TCGA-32-1979     TCGA-32-1980 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-1991     TCGA-32-2491 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2494     TCGA-32-2495     TCGA-32-2498     TCGA-32-2615 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-76-4925 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6282 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-6285     TCGA-81-5910     TCGA-87-5896 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
D62V2, multiclass
[1] "Remove cluster labels:" "TGFA MUTATED"          
clus
  TGFA MUTATED TGFA WILD-TYPE 
             2            239 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-2470 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-02-2483     TCGA-02-2485     TCGA-02-2486     TCGA-06-0122 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0124     TCGA-06-0126     TCGA-06-0128     TCGA-06-0129 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0130     TCGA-06-0132     TCGA-06-0137     TCGA-06-0139 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0152     TCGA-06-0154     TCGA-06-0155     TCGA-06-0157 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0158     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0749     TCGA-06-0750     TCGA-06-0875     TCGA-06-0876 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0877     TCGA-06-0878     TCGA-06-0879     TCGA-06-0881 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0882     TCGA-06-0939     TCGA-06-1804     TCGA-06-2557 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2558     TCGA-06-2559     TCGA-06-2561     TCGA-06-2562 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2563     TCGA-06-2564     TCGA-06-2565     TCGA-06-2567 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2569     TCGA-06-2570     TCGA-06-5408     TCGA-06-5410 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6389     TCGA-06-6390 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-6391     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5299     TCGA-12-5301 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0871 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-15-1444     TCGA-16-0846     TCGA-16-0861     TCGA-16-1045 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-16-1048     TCGA-19-1390     TCGA-19-1790     TCGA-19-2619 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2620     TCGA-19-2623     TCGA-19-2624     TCGA-19-2629 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2631     TCGA-19-4068     TCGA-19-5947     TCGA-19-5950 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-5951     TCGA-19-5952     TCGA-19-5954     TCGA-19-5955 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-27-1830 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1835     TCGA-27-1836     TCGA-27-1837     TCGA-27-1838 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2519     TCGA-27-2521     TCGA-27-2523 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2524     TCGA-27-2526     TCGA-27-2527     TCGA-27-2528 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-1747     TCGA-28-1753     TCGA-28-2501     TCGA-28-2502 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2509     TCGA-28-2510     TCGA-28-2513     TCGA-28-2514 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5213     TCGA-28-5214     TCGA-28-5215     TCGA-28-5216 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5219     TCGA-28-5220     TCGA-28-6450 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1977     TCGA-32-1979     TCGA-32-1980 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-1991     TCGA-32-2491 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2494     TCGA-32-2495     TCGA-32-2498     TCGA-32-2615 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-76-4925 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6282 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-6285     TCGA-81-5910     TCGA-87-5896 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
D62V3, multiclass
[1] "Remove cluster labels:" "TGFA MUTATED"          
clus
  TGFA MUTATED TGFA WILD-TYPE 
             2            201 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0122     TCGA-06-0124     TCGA-06-0126     TCGA-06-0128 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0137     TCGA-06-0139 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0151     TCGA-06-0152     TCGA-06-0154     TCGA-06-0155 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0157     TCGA-06-0158     TCGA-06-0166     TCGA-06-0168 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0743 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0744     TCGA-06-0745     TCGA-06-0747     TCGA-06-0749 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0881     TCGA-06-0882 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0939     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-08-0386     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0786 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0871     TCGA-14-1456     TCGA-14-1823 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-16-0846     TCGA-16-0861 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-16-1045     TCGA-16-1048     TCGA-19-1390     TCGA-19-1790 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2629     TCGA-19-2631     TCGA-19-4068     TCGA-26-1439 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1833     TCGA-27-1834     TCGA-27-1835 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1836     TCGA-27-1837     TCGA-27-1838     TCGA-27-2518 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2527     TCGA-27-2528     TCGA-28-1747 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1977     TCGA-32-1982     TCGA-32-1986 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2498     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4208     TCGA-32-4209     TCGA-32-4210 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-4211     TCGA-32-4213     TCGA-32-4719     TCGA-32-5222 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2572     TCGA-41-2573     TCGA-41-2575 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4935 
"TGFA WILD-TYPE" 
D62V4, multiclass
[1] "Remove cluster labels:" "TGFA MUTATED"          
clus
  TGFA MUTATED TGFA WILD-TYPE 
             2            201 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0122     TCGA-06-0124     TCGA-06-0126     TCGA-06-0128 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0137     TCGA-06-0139 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0151     TCGA-06-0152     TCGA-06-0154     TCGA-06-0155 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0157     TCGA-06-0158     TCGA-06-0166     TCGA-06-0168 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0743 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0744     TCGA-06-0745     TCGA-06-0747     TCGA-06-0749 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0881     TCGA-06-0882 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0939     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-08-0386     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0786 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0871     TCGA-14-1456     TCGA-14-1823 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-16-0846     TCGA-16-0861 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-16-1045     TCGA-16-1048     TCGA-19-1390     TCGA-19-1790 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2629     TCGA-19-2631     TCGA-19-4068     TCGA-26-1439 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1833     TCGA-27-1834     TCGA-27-1835 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1836     TCGA-27-1837     TCGA-27-1838     TCGA-27-2518 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2527     TCGA-27-2528     TCGA-28-1747 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1977     TCGA-32-1982     TCGA-32-1986 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2498     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4208     TCGA-32-4209     TCGA-32-4210 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-4211     TCGA-32-4213     TCGA-32-4719     TCGA-32-5222 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2572     TCGA-41-2573     TCGA-41-2575 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4935 
"TGFA WILD-TYPE" 
D62V5, multiclass
        clus
vv       TGFA MUTATED TGFA WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1            107
  CLUS_3            2             77
D62V6, multiclass
[1] "Remove cluster labels:" "TGFA MUTATED"          
clus
  TGFA MUTATED TGFA WILD-TYPE 
             2            106 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5408 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6389 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-12-5295     TCGA-12-5299 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1979     TCGA-32-1980 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-5222     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4925 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6280 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6286 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6660     TCGA-76-6661 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" 
D62V7, multiclass
        clus
vv       TGFA MUTATED TGFA WILD-TYPE
  CLUS_1            1             40
  CLUS_2            1             37
  CLUS_3            0             31
  CLUS_4            1             32
D62V8, multiclass
        clus
vv       TGFA MUTATED TGFA WILD-TYPE
  CLUS_1            0             47
  CLUS_2            1             27
  CLUS_3            2             66
D62V9, multiclass
[1] "Remove cluster labels:" "TGFA MUTATED"          
clus
  TGFA MUTATED TGFA WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-02-2486     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0141     TCGA-06-0157     TCGA-06-0158     TCGA-06-0168 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0219 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0649     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0878 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0882     TCGA-06-1804     TCGA-06-2557     TCGA-06-2558 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5859     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0821     TCGA-12-1597     TCGA-12-3650 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0787     TCGA-14-0789     TCGA-14-0790 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0817     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-2554     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-16-1045     TCGA-19-1390     TCGA-19-2619     TCGA-19-2620 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2629     TCGA-19-5960     TCGA-26-1442 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
D62V10, multiclass
[1] "Remove cluster labels:" "TGFA MUTATED"          
clus
  TGFA MUTATED TGFA WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-02-2486     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0141     TCGA-06-0157     TCGA-06-0158     TCGA-06-0168 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0219 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0649     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0878 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-0882     TCGA-06-1804     TCGA-06-2557     TCGA-06-2558 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-06-5859     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0821     TCGA-12-1597     TCGA-12-3650 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0787     TCGA-14-0789     TCGA-14-0790 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-0817     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-14-2554     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-16-1045     TCGA-19-1390     TCGA-19-2619     TCGA-19-2620 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2629     TCGA-19-5960     TCGA-26-1442 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"TGFA WILD-TYPE" "TGFA WILD-TYPE" "TGFA WILD-TYPE" 

Clustering(63) Variable = OR5P2 MUTATION ANALYSIS
D63V1, multiclass
        clus
vv       OR5P2 MUTATED OR5P2 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             2              83
  CLUS_3             0              80
D63V2, multiclass
        clus
vv       OR5P2 MUTATED OR5P2 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             0              59
  CLUS_3             1              78
D63V3, multiclass
        clus
vv       OR5P2 MUTATED OR5P2 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             0              72
  CLUS_3             1              29
  CLUS_4             1              43
D63V4, multiclass
        clus
vv       OR5P2 MUTATED OR5P2 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             1              80
  CLUS_3             1              48
D63V5, multiclass
        clus
vv       OR5P2 MUTATED OR5P2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1             107
  CLUS_3             0              79
D63V6, multiclass
[1] "Remove cluster labels:" "OR5P2 MUTATED"         
clus
  OR5P2 MUTATED OR5P2 WILD-TYPE 
              2             106 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0740      TCGA-14-0781      TCGA-14-0862 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-14-1043      TCGA-14-1395      TCGA-14-1450      TCGA-15-1444 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5135      TCGA-26-5136 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-28-2501 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-2510      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-6656      TCGA-76-6657      TCGA-76-6660      TCGA-76-6661 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-81-5911      TCGA-87-5896 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
D63V7, multiclass
[1] "Remove cluster labels:" "OR5P2 MUTATED"         
clus
  OR5P2 MUTATED OR5P2 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0644      TCGA-06-0650 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-14-0813      TCGA-14-0862 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1823      TCGA-16-0846      TCGA-19-1390 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2625 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5953      TCGA-19-5954 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-6173      TCGA-26-6174      TCGA-27-1830      TCGA-27-1831 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1836 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-2518      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-5208      TCGA-28-5214      TCGA-32-1970 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-4210 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-5222      TCGA-41-2573      TCGA-41-2575 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-81-5910 
"OR5P2 WILD-TYPE" 
D63V8, multiclass
[1] "Remove cluster labels:" "OR5P2 MUTATED"         
clus
  OR5P2 MUTATED OR5P2 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0644      TCGA-06-0650 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-14-0813      TCGA-14-0862 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1823      TCGA-16-0846      TCGA-19-1390 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2625 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5953      TCGA-19-5954 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-6173      TCGA-26-6174      TCGA-27-1830      TCGA-27-1831 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1836 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-2518      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-5208      TCGA-28-5214      TCGA-32-1970 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-4210 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-5222      TCGA-41-2573      TCGA-41-2575 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-81-5910 
"OR5P2 WILD-TYPE" 
D63V9, multiclass
[1] "Remove cluster labels:" "OR5P2 MUTATED"         
clus
  OR5P2 MUTATED OR5P2 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0645      TCGA-06-0646      TCGA-06-0649 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0878      TCGA-06-0882 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5856      TCGA-06-5858      TCGA-06-5859 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3650      TCGA-12-3652 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-14-0781 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0817 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
D63V10, multiclass
[1] "Remove cluster labels:" "OR5P2 MUTATED"         
clus
  OR5P2 MUTATED OR5P2 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0645      TCGA-06-0646      TCGA-06-0649 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0878      TCGA-06-0882 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5856      TCGA-06-5858      TCGA-06-5859 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3650      TCGA-12-3652 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-14-0781 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0817 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" "OR5P2 WILD-TYPE" 

Clustering(64) Variable = UGT2B4 MUTATION ANALYSIS
D64V1, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              3               73
  CLUS_2              0               85
  CLUS_3              0               80
D64V2, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              3              100
  CLUS_2              0               59
  CLUS_3              0               79
D64V3, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              0               72
  CLUS_3              0               30
  CLUS_4              1               43
D64V4, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              2               79
  CLUS_3              0               49
D64V5, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1              107
  CLUS_3              1               78
D64V6, multiclass
[1] "Remove cluster labels:" "UGT2B4 MUTATED"        
clus
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
               2              106 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0740       TCGA-14-0781 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-1043       TCGA-14-1450       TCGA-15-1444 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5135       TCGA-26-5136 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-26-5139       TCGA-26-6173       TCGA-26-6174       TCGA-28-2501 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-2510       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1979       TCGA-32-1980 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-5222       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6578       TCGA-74-6584       TCGA-76-4925 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4928       TCGA-76-4929 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-4931       TCGA-76-4932       TCGA-76-4934       TCGA-76-4935 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-6191       TCGA-76-6192       TCGA-76-6193       TCGA-76-6280 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6283       TCGA-76-6285       TCGA-76-6286 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-6656       TCGA-76-6657       TCGA-76-6660       TCGA-76-6661 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
D64V7, multiclass
[1] "Remove cluster labels:" "UGT2B4 MUTATED"        
clus
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0238       TCGA-06-0644       TCGA-06-0650 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-06-6388       TCGA-06-6389 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6390       TCGA-06-6391       TCGA-06-6693       TCGA-06-6694 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6695       TCGA-06-6697       TCGA-06-6698       TCGA-06-6699 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6700       TCGA-06-6701       TCGA-08-0386       TCGA-12-0692 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-1597       TCGA-12-3649       TCGA-12-3650       TCGA-12-3652 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5301       TCGA-14-0813 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-0871       TCGA-14-1823       TCGA-16-0846 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-1390       TCGA-19-1790       TCGA-19-2619       TCGA-19-2620 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2631       TCGA-19-4068       TCGA-19-5947 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5950       TCGA-19-5951       TCGA-19-5952       TCGA-19-5953 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5954       TCGA-19-5955       TCGA-19-5958       TCGA-19-5959 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-6173       TCGA-26-6174       TCGA-27-1830 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1833       TCGA-27-1834 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-1836       TCGA-27-2518       TCGA-27-2528       TCGA-28-1747 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2501       TCGA-28-5208       TCGA-28-5214 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-4210       TCGA-32-4211       TCGA-32-5222       TCGA-41-2573 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-41-2575       TCGA-41-3392       TCGA-41-3393       TCGA-41-3915 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-41-4097       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-81-5910 
"UGT2B4 WILD-TYPE" 
D64V8, multiclass
[1] "Remove cluster labels:" "UGT2B4 MUTATED"        
clus
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0238       TCGA-06-0644       TCGA-06-0650 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-06-6388       TCGA-06-6389 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6390       TCGA-06-6391       TCGA-06-6693       TCGA-06-6694 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6695       TCGA-06-6697       TCGA-06-6698       TCGA-06-6699 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-6700       TCGA-06-6701       TCGA-08-0386       TCGA-12-0692 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-1597       TCGA-12-3649       TCGA-12-3650       TCGA-12-3652 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5301       TCGA-14-0813 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-0871       TCGA-14-1823       TCGA-16-0846 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-1390       TCGA-19-1790       TCGA-19-2619       TCGA-19-2620 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2631       TCGA-19-4068       TCGA-19-5947 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5950       TCGA-19-5951       TCGA-19-5952       TCGA-19-5953 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5954       TCGA-19-5955       TCGA-19-5958       TCGA-19-5959 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-6173       TCGA-26-6174       TCGA-27-1830 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1833       TCGA-27-1834 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-1836       TCGA-27-2518       TCGA-27-2528       TCGA-28-1747 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2501       TCGA-28-5208       TCGA-28-5214 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-4210       TCGA-32-4211       TCGA-32-5222       TCGA-41-2573 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-41-2575       TCGA-41-3392       TCGA-41-3393       TCGA-41-3915 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-41-4097       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-81-5910 
"UGT2B4 WILD-TYPE" 
D64V9, multiclass
[1] "Remove cluster labels:" "UGT2B4 MUTATED"        
clus
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
               1              140 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0878 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0882       TCGA-06-1804       TCGA-06-2557       TCGA-06-2558 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5859       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0821       TCGA-12-1597       TCGA-12-3650 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-2554       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2528       TCGA-28-1747 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2499       TCGA-28-2509       TCGA-28-2510 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5215 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5220       TCGA-32-1970 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-2615       TCGA-32-2632 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
D64V10, multiclass
[1] "Remove cluster labels:" "UGT2B4 MUTATED"        
clus
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
               1              140 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0878 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-0882       TCGA-06-1804       TCGA-06-2557       TCGA-06-2558 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-06-5859       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0821       TCGA-12-1597       TCGA-12-3650 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-14-2554       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-16-1045       TCGA-19-1390       TCGA-19-2619       TCGA-19-2620 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2528       TCGA-28-1747 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2499       TCGA-28-2509       TCGA-28-2510 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5215 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5220       TCGA-32-1970 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-2615       TCGA-32-2632 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" "UGT2B4 WILD-TYPE" 

Clustering(65) Variable = FOXR2 MUTATION ANALYSIS
D65V1, multiclass
        clus
vv       FOXR2 MUTATED FOXR2 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             2              83
  CLUS_3             1              79
D65V2, multiclass
        clus
vv       FOXR2 MUTATED FOXR2 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             0              59
  CLUS_3             2              77
D65V3, multiclass
        clus
vv       FOXR2 MUTATED FOXR2 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             2              70
  CLUS_3             1              29
  CLUS_4             0              44
D65V4, multiclass
        clus
vv       FOXR2 MUTATED FOXR2 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             0              81
  CLUS_3             3              46
D65V5, multiclass
        clus
vv       FOXR2 MUTATED FOXR2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1             107
  CLUS_3             3              76
D65V6, multiclass
[1] "Remove cluster labels:" "FOXR2 MUTATED"         
clus
  FOXR2 MUTATED FOXR2 WILD-TYPE 
              2             106 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5299 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0781      TCGA-14-0862      TCGA-14-1043 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-1395      TCGA-14-1450      TCGA-15-1444      TCGA-19-5947 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-6173      TCGA-26-6174      TCGA-28-2501      TCGA-28-2510 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-6450      TCGA-32-1979      TCGA-32-1980      TCGA-32-5222 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4925 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-4934      TCGA-76-4935 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-6191      TCGA-76-6192      TCGA-76-6193      TCGA-76-6280 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6286 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-6656      TCGA-76-6657      TCGA-76-6660      TCGA-76-6661 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-81-5911      TCGA-87-5896 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
D65V7, multiclass
[1] "Remove cluster labels:" "FOXR2 MUTATED"         
clus
  FOXR2 MUTATED FOXR2 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-1804 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5301      TCGA-14-0813      TCGA-14-0862 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1823      TCGA-16-0846      TCGA-19-1390 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2625 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5953      TCGA-19-5954 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-6173      TCGA-26-6174      TCGA-27-1830      TCGA-27-1831 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1836 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-2518      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-5208      TCGA-28-5214      TCGA-32-1970 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-4210 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-5222      TCGA-41-2573      TCGA-41-2575 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-81-5910 
"FOXR2 WILD-TYPE" 
D65V8, multiclass
[1] "Remove cluster labels:" "FOXR2 MUTATED"         
clus
  FOXR2 MUTATED FOXR2 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-1804 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5301      TCGA-14-0813      TCGA-14-0862 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1823      TCGA-16-0846      TCGA-19-1390 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2625 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5953      TCGA-19-5954 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-6173      TCGA-26-6174      TCGA-27-1830      TCGA-27-1831 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1836 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-2518      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-5208      TCGA-28-5214      TCGA-32-1970 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-4210 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-5222      TCGA-41-2573      TCGA-41-2575 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-81-5910 
"FOXR2 WILD-TYPE" 
D65V9, multiclass
[1] "Remove cluster labels:" "FOXR2 MUTATED"         
clus
  FOXR2 MUTATED FOXR2 WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5299 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-16-1045      TCGA-19-1390      TCGA-19-2619      TCGA-19-2620 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-5960 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-27-1830 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1834      TCGA-27-1835 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2528      TCGA-28-1747 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
D65V10, multiclass
[1] "Remove cluster labels:" "FOXR2 MUTATED"         
clus
  FOXR2 MUTATED FOXR2 WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5299 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-16-1045      TCGA-19-1390      TCGA-19-2619      TCGA-19-2620 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-5960 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-27-1830 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1834      TCGA-27-1835 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2528      TCGA-28-1747 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" "FOXR2 WILD-TYPE" 

Clustering(66) Variable = PSG8 MUTATION ANALYSIS
D66V1, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            2             74
  CLUS_2            2             83
  CLUS_3            2             78
D66V2, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            3            100
  CLUS_2            1             58
  CLUS_3            2             77
D66V3, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            1             71
  CLUS_3            0             30
  CLUS_4            1             43
D66V4, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            1             80
  CLUS_3            0             49
D66V5, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2            106
  CLUS_3            1             78
D66V6, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             19
  CLUS_3            1             24
  CLUS_4            0             26
D66V7, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            0             41
  CLUS_2            1             37
  CLUS_3            1             30
  CLUS_4            1             32
D66V8, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             28
  CLUS_3            2             66
D66V9, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            2             60
  CLUS_3            2             33
D66V10, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            3             58
  CLUS_2            0             21
  CLUS_3            2             57

Clustering(67) Variable = CNTNAP2 MUTATION ANALYSIS
D67V1, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               3                73
  CLUS_2               4                81
  CLUS_3               5                75
D67V2, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               4                99
  CLUS_2               2                57
  CLUS_3               6                73
D67V3, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               2                55
  CLUS_2               1                71
  CLUS_3               3                27
  CLUS_4               3                41
D67V4, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               4                69
  CLUS_2               2                79
  CLUS_3               3                46
D67V5, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               4               104
  CLUS_3               3                76
D67V6, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               2                18
  CLUS_3               1                24
  CLUS_4               1                25
D67V7, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               2                39
  CLUS_2               3                35
  CLUS_3               2                29
  CLUS_4               1                32
D67V8, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               2                26
  CLUS_3               3                65
D67V9, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               2                42
  CLUS_2               2                60
  CLUS_3               0                35
D67V10, multiclass
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  CLUS_1               2                59
  CLUS_2               0                21
  CLUS_3               2                57

Clustering(68) Variable = PIK3C2G MUTATION ANALYSIS
D68V1, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                75
  CLUS_2               2                83
  CLUS_3               5                75
D68V2, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               7                96
  CLUS_2               0                59
  CLUS_3               1                78
D68V3, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               2                55
  CLUS_2               3                69
  CLUS_3               0                30
  CLUS_4               1                43
D68V4, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                72
  CLUS_2               4                77
  CLUS_3               1                48
D68V5, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               2                85
  CLUS_2               6               102
  CLUS_3               1                78
D68V6, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                20
  CLUS_3               1                24
  CLUS_4               2                24
D68V7, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               2                39
  CLUS_2               2                36
  CLUS_3               0                31
  CLUS_4               1                32
D68V8, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                28
  CLUS_3               3                65
D68V9, multiclass
[1] "Remove cluster labels:" "PIK3C2G MUTATED"       
clus
  PIK3C2G MUTATED PIK3C2G WILD-TYPE 
                1               140 
       TCGA-02-0047        TCGA-02-0055        TCGA-02-2483        TCGA-02-2485 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-02-2486        TCGA-06-0129        TCGA-06-0130        TCGA-06-0132 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0141        TCGA-06-0157        TCGA-06-0158        TCGA-06-0168 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0178        TCGA-06-0184        TCGA-06-0219 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0644        TCGA-06-0645        TCGA-06-0646 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0649        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0878        TCGA-06-0882        TCGA-06-1804        TCGA-06-2557 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2567 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-2569        TCGA-06-2570        TCGA-06-5408        TCGA-06-5410 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-5411        TCGA-06-5412        TCGA-06-5413        TCGA-06-5414 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-5415        TCGA-06-5417        TCGA-06-5418        TCGA-06-5856 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-5858        TCGA-06-5859        TCGA-08-0386        TCGA-12-0616 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0821        TCGA-12-1597 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-12-3650        TCGA-12-3652        TCGA-12-3653        TCGA-12-5295 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-12-5299        TCGA-14-0781        TCGA-14-0787        TCGA-14-0789 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0817        TCGA-14-1823        TCGA-14-1825 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-14-1829        TCGA-14-2554        TCGA-15-0742        TCGA-15-1444 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-16-0846        TCGA-16-1045        TCGA-19-1390        TCGA-19-2619 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-19-2620        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1442        TCGA-26-5132        TCGA-26-5133 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-26-5134        TCGA-26-5135        TCGA-26-5136        TCGA-26-5139 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1834 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1837        TCGA-27-2519        TCGA-27-2521 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2528 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-28-1747        TCGA-28-1753        TCGA-28-2499        TCGA-28-2509 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-28-2510        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5213 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-28-5215        TCGA-28-5216        TCGA-28-5218        TCGA-28-5220 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1980        TCGA-32-1982        TCGA-32-2615 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4213 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-3915 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-76-4925        TCGA-76-4926 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-76-4927        TCGA-76-4928        TCGA-76-4931        TCGA-76-4932 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
D68V10, multiclass
[1] "Remove cluster labels:" "PIK3C2G MUTATED"       
clus
  PIK3C2G MUTATED PIK3C2G WILD-TYPE 
                1               140 
       TCGA-02-0047        TCGA-02-0055        TCGA-02-2483        TCGA-02-2485 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-02-2486        TCGA-06-0129        TCGA-06-0130        TCGA-06-0132 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0141        TCGA-06-0157        TCGA-06-0158        TCGA-06-0168 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0178        TCGA-06-0184        TCGA-06-0219 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0644        TCGA-06-0645        TCGA-06-0646 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0649        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-0878        TCGA-06-0882        TCGA-06-1804        TCGA-06-2557 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2567 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-2569        TCGA-06-2570        TCGA-06-5408        TCGA-06-5410 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-5411        TCGA-06-5412        TCGA-06-5413        TCGA-06-5414 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-5415        TCGA-06-5417        TCGA-06-5418        TCGA-06-5856 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-06-5858        TCGA-06-5859        TCGA-08-0386        TCGA-12-0616 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0821        TCGA-12-1597 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-12-3650        TCGA-12-3652        TCGA-12-3653        TCGA-12-5295 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-12-5299        TCGA-14-0781        TCGA-14-0787        TCGA-14-0789 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0817        TCGA-14-1823        TCGA-14-1825 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-14-1829        TCGA-14-2554        TCGA-15-0742        TCGA-15-1444 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-16-0846        TCGA-16-1045        TCGA-19-1390        TCGA-19-2619 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-19-2620        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1442        TCGA-26-5132        TCGA-26-5133 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-26-5134        TCGA-26-5135        TCGA-26-5136        TCGA-26-5139 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1834 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1837        TCGA-27-2519        TCGA-27-2521 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2528 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-28-1747        TCGA-28-1753        TCGA-28-2499        TCGA-28-2509 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-28-2510        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5213 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-28-5215        TCGA-28-5216        TCGA-28-5218        TCGA-28-5220 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1980        TCGA-32-1982        TCGA-32-2615 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4213 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-3915 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-76-4925        TCGA-76-4926 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 
       TCGA-76-4927        TCGA-76-4928        TCGA-76-4931        TCGA-76-4932 
"PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" "PIK3C2G WILD-TYPE" 

Clustering(69) Variable = SCN9A MUTATION ANALYSIS
D69V1, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             5              71
  CLUS_2             3              82
  CLUS_3             3              77
D69V2, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             5              98
  CLUS_2             4              55
  CLUS_3             2              77
D69V3, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             2              55
  CLUS_2             4              68
  CLUS_3             1              29
  CLUS_4             2              42
D69V4, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             2              71
  CLUS_2             6              75
  CLUS_3             1              48
D69V5, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             2              85
  CLUS_2             5             103
  CLUS_3             4              75
D69V6, multiclass
[1] "Remove cluster labels:" "SCN9A MUTATED"         
clus
  SCN9A MUTATED SCN9A WILD-TYPE 
              2             106 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-28-2501 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-28-2510      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-81-5911      TCGA-87-5896 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
D69V7, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             2              39
  CLUS_2             2              36
  CLUS_3             0              31
  CLUS_4             1              32
D69V8, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              27
  CLUS_3             3              65
D69V9, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             2              42
  CLUS_2             1              61
  CLUS_3             2              33
D69V10, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             2              59
  CLUS_2             0              21
  CLUS_3             3              56

Clustering(70) Variable = GABRA1 MUTATION ANALYSIS
D70V1, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              2               74
  CLUS_2              0               85
  CLUS_3              3               77
D70V2, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              2               57
  CLUS_3              1               78
D70V3, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              2               70
  CLUS_3              1               29
  CLUS_4              0               44
D70V4, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              2               79
  CLUS_3              0               49
D70V5, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              3              105
  CLUS_3              1               78
D70V6, multiclass
[1] "Remove cluster labels:" "GABRA1 MUTATED"        
clus
  GABRA1 MUTATED GABRA1 WILD-TYPE 
               2              106 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-06-6388       TCGA-06-6389 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-06-6390       TCGA-06-6391       TCGA-06-6693       TCGA-06-6694 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-06-6695       TCGA-06-6697       TCGA-06-6698       TCGA-06-6699 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-06-6700       TCGA-06-6701       TCGA-12-5295       TCGA-12-5299 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0862 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-14-1043       TCGA-14-1395       TCGA-14-1450       TCGA-15-1444 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5135       TCGA-26-5136 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-26-5139       TCGA-26-6173       TCGA-26-6174       TCGA-28-2501 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-28-2510       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1979       TCGA-32-1980 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-32-5222       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-76-4935       TCGA-76-6191       TCGA-76-6192       TCGA-76-6193 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-76-6280       TCGA-76-6282       TCGA-76-6283       TCGA-76-6285 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"GABRA1 WILD-TYPE" "GABRA1 WILD-TYPE" 
D70V7, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              2               39
  CLUS_2              0               38
  CLUS_3              1               30
  CLUS_4              0               33
D70V8, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               27
  CLUS_3              0               68
D70V9, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              2               60
  CLUS_3              1               34
D70V10, multiclass
        clus
vv       GABRA1 MUTATED GABRA1 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              1               20
  CLUS_3              1               58

Clustering(71) Variable = DYNC1I1 MUTATION ANALYSIS
D71V1, multiclass
        clus
vv       DYNC1I1 MUTATED DYNC1I1 WILD-TYPE
  CLUS_1               0                76
  CLUS_2               3                82
  CLUS_3               2                78
D71V2, multiclass
        clus
vv       DYNC1I1 MUTATED DYNC1I1 WILD-TYPE
  CLUS_1               0               103
  CLUS_2               1                58
  CLUS_3               4                75
D71V3, multiclass
        clus
vv       DYNC1I1 MUTATED DYNC1I1 WILD-TYPE
  CLUS_1               0                57
  CLUS_2               3                69
  CLUS_3               1                29
  CLUS_4               1                43
D71V4, multiclass
        clus
vv       DYNC1I1 MUTATED DYNC1I1 WILD-TYPE
  CLUS_1               0                73
  CLUS_2               3                78
  CLUS_3               2                47
D71V5, multiclass
        clus
vv       DYNC1I1 MUTATED DYNC1I1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               3               105
  CLUS_3               2                77
D71V6, multiclass
[1] "Remove cluster labels:" "DYNC1I1 MUTATED"       
clus
  DYNC1I1 MUTATED DYNC1I1 WILD-TYPE 
                2               106 
       TCGA-06-0650        TCGA-06-1804        TCGA-06-1806        TCGA-06-5408 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5417        TCGA-06-5418 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-12-5295 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-12-5299        TCGA-12-5301        TCGA-14-0740        TCGA-14-0781 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-14-0862        TCGA-14-1043        TCGA-14-1395        TCGA-15-1444 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-19-5947        TCGA-19-5950        TCGA-19-5951        TCGA-19-5952 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-19-5953        TCGA-19-5954        TCGA-19-5955        TCGA-19-5958 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1442        TCGA-26-5132 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-28-2501        TCGA-28-2510 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1979        TCGA-32-1980        TCGA-32-5222 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-41-5651        TCGA-41-6646        TCGA-74-6573        TCGA-74-6575 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-74-6577        TCGA-74-6578        TCGA-74-6584        TCGA-76-4925 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-4926        TCGA-76-4927        TCGA-76-4928        TCGA-76-4929 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-4931        TCGA-76-4932        TCGA-76-4934        TCGA-76-4935 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6283        TCGA-76-6285        TCGA-76-6286 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6660        TCGA-76-6661 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-6662        TCGA-76-6663        TCGA-76-6664        TCGA-81-5910 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-81-5911        TCGA-87-5896 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
D71V7, multiclass
        clus
vv       DYNC1I1 MUTATED DYNC1I1 WILD-TYPE
  CLUS_1               0                41
  CLUS_2               2                36
  CLUS_3               2                29
  CLUS_4               0                33
D71V8, multiclass
        clus
vv       DYNC1I1 MUTATED DYNC1I1 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                28
  CLUS_3               2                66
D71V9, multiclass
[1] "Remove cluster labels:" "DYNC1I1 MUTATED"       
clus
  DYNC1I1 MUTATED DYNC1I1 WILD-TYPE 
                2               139 
       TCGA-02-0047        TCGA-02-0055        TCGA-02-2483        TCGA-02-2485 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-02-2486        TCGA-06-0130        TCGA-06-0132        TCGA-06-0141 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0157        TCGA-06-0158        TCGA-06-0168        TCGA-06-0174 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0178        TCGA-06-0184        TCGA-06-0219        TCGA-06-0238 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0644        TCGA-06-0645        TCGA-06-0646        TCGA-06-0649 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0878 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0882        TCGA-06-1804        TCGA-06-2557        TCGA-06-2558 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-2559        TCGA-06-2561        TCGA-06-2562        TCGA-06-2563 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-2564        TCGA-06-2565        TCGA-06-2567        TCGA-06-2569 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-2570        TCGA-06-5408        TCGA-06-5410        TCGA-06-5411 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5412        TCGA-06-5413        TCGA-06-5414        TCGA-06-5415 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5417        TCGA-06-5418        TCGA-06-5856        TCGA-06-5858 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5859        TCGA-08-0386        TCGA-12-0616        TCGA-12-0618 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0821        TCGA-12-1597        TCGA-12-3650 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-12-3652        TCGA-12-3653        TCGA-12-5295        TCGA-12-5299 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-14-0781        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-14-0817        TCGA-14-1823        TCGA-14-1825        TCGA-14-1829 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-14-2554        TCGA-15-0742        TCGA-15-1444        TCGA-16-0846 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-16-1045        TCGA-19-1390        TCGA-19-2619        TCGA-19-2620 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-19-2624        TCGA-19-2625        TCGA-19-2629        TCGA-19-5960 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-26-1442        TCGA-26-5132        TCGA-26-5133        TCGA-26-5134 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-26-5135        TCGA-26-5136        TCGA-26-5139        TCGA-27-1830 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1834        TCGA-27-1835 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-27-1837        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2528        TCGA-28-1753 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-2499        TCGA-28-2509        TCGA-28-2510        TCGA-28-2513 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-2514        TCGA-28-5204        TCGA-28-5207        TCGA-28-5208 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-5209        TCGA-28-5213        TCGA-28-5215        TCGA-28-5216 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5220        TCGA-32-1970        TCGA-32-1980 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-2615        TCGA-32-2632        TCGA-32-2634 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-32-2638        TCGA-32-4213        TCGA-32-5222        TCGA-41-2571 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-41-2572        TCGA-41-3915        TCGA-41-4097        TCGA-41-5651 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-4925        TCGA-76-4926        TCGA-76-4927        TCGA-76-4928 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4932 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
D71V10, multiclass
[1] "Remove cluster labels:" "DYNC1I1 MUTATED"       
clus
  DYNC1I1 MUTATED DYNC1I1 WILD-TYPE 
                2               139 
       TCGA-02-0047        TCGA-02-0055        TCGA-02-2483        TCGA-02-2485 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-02-2486        TCGA-06-0130        TCGA-06-0132        TCGA-06-0141 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0157        TCGA-06-0158        TCGA-06-0168        TCGA-06-0174 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0178        TCGA-06-0184        TCGA-06-0219        TCGA-06-0238 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0644        TCGA-06-0645        TCGA-06-0646        TCGA-06-0649 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0878 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-0882        TCGA-06-1804        TCGA-06-2557        TCGA-06-2558 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-2559        TCGA-06-2561        TCGA-06-2562        TCGA-06-2563 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-2564        TCGA-06-2565        TCGA-06-2567        TCGA-06-2569 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-2570        TCGA-06-5408        TCGA-06-5410        TCGA-06-5411 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5412        TCGA-06-5413        TCGA-06-5414        TCGA-06-5415 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5417        TCGA-06-5418        TCGA-06-5856        TCGA-06-5858 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-06-5859        TCGA-08-0386        TCGA-12-0616        TCGA-12-0618 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0821        TCGA-12-1597        TCGA-12-3650 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-12-3652        TCGA-12-3653        TCGA-12-5295        TCGA-12-5299 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-14-0781        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-14-0817        TCGA-14-1823        TCGA-14-1825        TCGA-14-1829 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-14-2554        TCGA-15-0742        TCGA-15-1444        TCGA-16-0846 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-16-1045        TCGA-19-1390        TCGA-19-2619        TCGA-19-2620 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-19-2624        TCGA-19-2625        TCGA-19-2629        TCGA-19-5960 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-26-1442        TCGA-26-5132        TCGA-26-5133        TCGA-26-5134 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-26-5135        TCGA-26-5136        TCGA-26-5139        TCGA-27-1830 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1834        TCGA-27-1835 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-27-1837        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2528        TCGA-28-1753 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-2499        TCGA-28-2509        TCGA-28-2510        TCGA-28-2513 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-2514        TCGA-28-5204        TCGA-28-5207        TCGA-28-5208 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-5209        TCGA-28-5213        TCGA-28-5215        TCGA-28-5216 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5220        TCGA-32-1970        TCGA-32-1980 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-2615        TCGA-32-2632        TCGA-32-2634 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-32-2638        TCGA-32-4213        TCGA-32-5222        TCGA-41-2571 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-41-2572        TCGA-41-3915        TCGA-41-4097        TCGA-41-5651 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-4925        TCGA-76-4926        TCGA-76-4927        TCGA-76-4928 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4932 
"DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" "DYNC1I1 WILD-TYPE" 

Clustering(72) Variable = PODXL MUTATION ANALYSIS
D72V1, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             1              75
  CLUS_2             1              84
  CLUS_3             1              79
D72V2, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1              58
  CLUS_3             1              78
D72V3, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             0              57
  CLUS_2             1              71
  CLUS_3             1              29
  CLUS_4             1              43
D72V4, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              79
  CLUS_3             0              49
D72V5, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              2             272 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0168      TCGA-06-0169 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0173      TCGA-06-0174      TCGA-06-0178      TCGA-06-0184 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0185      TCGA-06-0188      TCGA-06-0189      TCGA-06-0192 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0209      TCGA-06-0213      TCGA-06-0214      TCGA-06-0216 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0219      TCGA-06-0237      TCGA-06-0238      TCGA-06-0240 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0241      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0648      TCGA-06-0649      TCGA-06-0650      TCGA-06-0686 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0749      TCGA-06-0750      TCGA-06-0875      TCGA-06-0876 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0877      TCGA-06-0878      TCGA-06-0879      TCGA-06-0881 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0882      TCGA-06-0939      TCGA-06-1804      TCGA-06-1806 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5418      TCGA-06-5856 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0615 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-0616      TCGA-12-0618      TCGA-12-0619      TCGA-12-0688 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-0692      TCGA-12-0821      TCGA-12-3649      TCGA-12-3650 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0786 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0813 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-0817      TCGA-14-0862      TCGA-14-0871      TCGA-14-1043 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-1395      TCGA-14-1450      TCGA-14-1456      TCGA-14-1823 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-1825      TCGA-14-1829      TCGA-14-2554      TCGA-14-4157 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-0861 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-16-1045      TCGA-16-1048      TCGA-19-1390      TCGA-19-2619 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2623      TCGA-19-2624      TCGA-19-2625 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-2629      TCGA-19-2631      TCGA-19-5947      TCGA-19-5950 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5953      TCGA-19-5954 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-1439      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-6173      TCGA-26-6174      TCGA-27-1830      TCGA-27-1831 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1835 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1836      TCGA-27-1837      TCGA-27-1838      TCGA-27-2518 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2527      TCGA-27-2528      TCGA-28-1747 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-2502      TCGA-28-2509 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-2510      TCGA-28-2513      TCGA-28-2514      TCGA-28-5204 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5207      TCGA-28-5208      TCGA-28-5209      TCGA-28-5211 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5213      TCGA-28-5214      TCGA-28-5216      TCGA-28-5218 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5219      TCGA-28-5220      TCGA-28-6450      TCGA-32-1970 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-1977      TCGA-32-1979      TCGA-32-1980      TCGA-32-1982 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-1986      TCGA-32-1991      TCGA-32-2491      TCGA-32-2494 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-2495      TCGA-32-2498      TCGA-32-2615      TCGA-32-2632 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4208      TCGA-32-4210 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-4211      TCGA-32-4213      TCGA-32-4719      TCGA-32-5222 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-2573      TCGA-41-2575 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4925 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6283 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6661      TCGA-76-6662      TCGA-76-6663 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
D72V6, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-2501      TCGA-28-2510      TCGA-28-5204      TCGA-28-5207 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5211      TCGA-28-5213 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5214      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
D72V7, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-0692      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5301 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0862      TCGA-14-0871      TCGA-14-1823 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-16-0846      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2625      TCGA-19-2631      TCGA-19-5947 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2518      TCGA-27-2528      TCGA-28-1747 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-5208      TCGA-28-5214 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" 
D72V8, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-0692      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5301 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0862      TCGA-14-0871      TCGA-14-1823 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-16-0846      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2625      TCGA-19-2631      TCGA-19-5947 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2518      TCGA-27-2528      TCGA-28-1747 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-5208      TCGA-28-5214 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" 
D72V9, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0781      TCGA-14-0787      TCGA-14-0789 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0817      TCGA-14-1823      TCGA-14-1825 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-15-0742      TCGA-15-1444 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-16-0846      TCGA-16-1045      TCGA-19-1390      TCGA-19-2619 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2624      TCGA-19-2625      TCGA-19-2629 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1834 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1837      TCGA-27-2519      TCGA-27-2521 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2528 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-1747      TCGA-28-1753      TCGA-28-2499      TCGA-28-2509 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-2510      TCGA-28-2513      TCGA-28-2514      TCGA-28-5204 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5207      TCGA-28-5208      TCGA-28-5209      TCGA-28-5213 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
D72V10, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0781      TCGA-14-0787      TCGA-14-0789 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0817      TCGA-14-1823      TCGA-14-1825 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-15-0742      TCGA-15-1444 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-16-0846      TCGA-16-1045      TCGA-19-1390      TCGA-19-2619 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2624      TCGA-19-2625      TCGA-19-2629 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1834 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1837      TCGA-27-2519      TCGA-27-2521 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2528 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-1747      TCGA-28-1753      TCGA-28-2499      TCGA-28-2509 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-2510      TCGA-28-2513      TCGA-28-2514      TCGA-28-5204 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5207      TCGA-28-5208      TCGA-28-5209      TCGA-28-5213 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 

Clustering(73) Variable = HCN1 MUTATION ANALYSIS
D73V1, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            3             73
  CLUS_2            3             82
  CLUS_3            4             76
D73V2, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            4             99
  CLUS_2            3             56
  CLUS_3            3             76
D73V3, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            1             56
  CLUS_2            1             71
  CLUS_3            3             27
  CLUS_4            1             43
D73V4, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            0             81
  CLUS_3            3             46
D73V5, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            5            103
  CLUS_3            4             75
D73V6, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             19
  CLUS_3            1             24
  CLUS_4            2             24
D73V7, multiclass
[1] "Remove cluster labels:" "HCN1 MUTATED"          
clus
  HCN1 MUTATED HCN1 WILD-TYPE 
             1            142 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2570     TCGA-06-5408 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-12-0692     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5301 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0862     TCGA-14-0871     TCGA-14-1823 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-16-0846     TCGA-19-1390     TCGA-19-1790     TCGA-19-2619 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-19-2620     TCGA-19-2625     TCGA-19-2631     TCGA-19-4068 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5959 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-6173     TCGA-26-6174     TCGA-27-1830 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-27-1836     TCGA-27-2518     TCGA-27-2528     TCGA-28-1747 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2501     TCGA-28-5208     TCGA-28-5214 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-5222     TCGA-41-2573 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-41-4097     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-6192     TCGA-76-6193 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6656 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-6657     TCGA-76-6660     TCGA-76-6662     TCGA-76-6663 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-6664     TCGA-81-5910 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
D73V8, multiclass
[1] "Remove cluster labels:" "HCN1 MUTATED"          
clus
  HCN1 MUTATED HCN1 WILD-TYPE 
             1            142 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2570     TCGA-06-5408 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-12-0692     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5301 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0862     TCGA-14-0871     TCGA-14-1823 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-16-0846     TCGA-19-1390     TCGA-19-1790     TCGA-19-2619 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-19-2620     TCGA-19-2625     TCGA-19-2631     TCGA-19-4068 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5959 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-6173     TCGA-26-6174     TCGA-27-1830 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-27-1836     TCGA-27-2518     TCGA-27-2528     TCGA-28-1747 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2501     TCGA-28-5208     TCGA-28-5214 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-5222     TCGA-41-2573 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-41-4097     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-6192     TCGA-76-6193 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6656 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-6657     TCGA-76-6660     TCGA-76-6662     TCGA-76-6663 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-76-6664     TCGA-81-5910 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
D73V9, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            1             61
  CLUS_3            1             34
D73V10, multiclass
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  CLUS_1            1             60
  CLUS_2            1             20
  CLUS_3            1             58

Clustering(74) Variable = POTEF MUTATION ANALYSIS
D74V1, multiclass
        clus
vv       POTEF MUTATED POTEF WILD-TYPE
  CLUS_1             3              73
  CLUS_2             0              85
  CLUS_3             0              80
D74V2, multiclass
        clus
vv       POTEF MUTATED POTEF WILD-TYPE
  CLUS_1             2             101
  CLUS_2             0              59
  CLUS_3             1              78
D74V3, multiclass
        clus
vv       POTEF MUTATED POTEF WILD-TYPE
  CLUS_1             1              56
  CLUS_2             1              71
  CLUS_3             0              30
  CLUS_4             1              43
D74V4, multiclass
        clus
vv       POTEF MUTATED POTEF WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              79
  CLUS_3             0              49
D74V5, multiclass
        clus
vv       POTEF MUTATED POTEF WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1             107
  CLUS_3             0              79
D74V6, multiclass
[1] "Remove cluster labels:" "POTEF MUTATED"         
clus
  POTEF MUTATED POTEF WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-2501      TCGA-28-2510      TCGA-28-5204      TCGA-28-5207 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5211      TCGA-28-5213 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5214      TCGA-28-5215      TCGA-28-5216      TCGA-28-5218 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5219      TCGA-28-5220      TCGA-28-6450      TCGA-32-1979 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-32-1980      TCGA-32-5222      TCGA-41-5651      TCGA-41-6646 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
D74V7, multiclass
[1] "Remove cluster labels:" "POTEF MUTATED"         
clus
  POTEF MUTATED POTEF WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-0692      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5301 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0862      TCGA-14-0871      TCGA-14-1823 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-16-0846      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2625      TCGA-19-2631      TCGA-19-4068 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-6173      TCGA-26-6174 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1836      TCGA-27-2518      TCGA-27-2528 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-1747      TCGA-28-1753      TCGA-28-2501      TCGA-28-5208 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5214      TCGA-32-1970      TCGA-32-1982      TCGA-32-1986 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-32-1991      TCGA-32-4210      TCGA-32-5222      TCGA-41-2573 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" 
D74V8, multiclass
[1] "Remove cluster labels:" "POTEF MUTATED"         
clus
  POTEF MUTATED POTEF WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-0692      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5301 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0862      TCGA-14-0871      TCGA-14-1823 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-16-0846      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2625      TCGA-19-2631      TCGA-19-4068 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-6173      TCGA-26-6174 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1836      TCGA-27-2518      TCGA-27-2528 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-1747      TCGA-28-1753      TCGA-28-2501      TCGA-28-5208 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5214      TCGA-32-1970      TCGA-32-1982      TCGA-32-1986 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-32-1991      TCGA-32-4210      TCGA-32-5222      TCGA-41-2573 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" 
D74V9, multiclass
[1] "Remove cluster labels:" "POTEF MUTATED"         
clus
  POTEF MUTATED POTEF WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0174 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0178      TCGA-06-0184      TCGA-06-0219      TCGA-06-0238 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0645      TCGA-06-0646      TCGA-06-0649 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0878 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0882      TCGA-06-1804      TCGA-06-2557      TCGA-06-2558 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5859      TCGA-08-0386      TCGA-12-0616      TCGA-12-0618 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0821      TCGA-12-1597      TCGA-12-3650 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-0817      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
D74V10, multiclass
[1] "Remove cluster labels:" "POTEF MUTATED"         
clus
  POTEF MUTATED POTEF WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0174 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0178      TCGA-06-0184      TCGA-06-0219      TCGA-06-0238 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0645      TCGA-06-0646      TCGA-06-0649 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0878 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-0882      TCGA-06-1804      TCGA-06-2557      TCGA-06-2558 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-06-5859      TCGA-08-0386      TCGA-12-0616      TCGA-12-0618 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0821      TCGA-12-1597      TCGA-12-3650 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-0817      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"POTEF WILD-TYPE" "POTEF WILD-TYPE" "POTEF WILD-TYPE" 

Clustering(75) Variable = CXORF22 MUTATION ANALYSIS
D75V1, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               4                72
  CLUS_2               2                83
  CLUS_3               1                79
D75V2, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               4                99
  CLUS_2               1                58
  CLUS_3               2                77
D75V3, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               4                53
  CLUS_2               1                71
  CLUS_3               0                30
  CLUS_4               0                44
D75V4, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               2                79
  CLUS_3               1                48
D75V5, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1               107
  CLUS_3               3                76
D75V6, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                20
  CLUS_3               0                25
  CLUS_4               2                24
D75V7, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               3                38
  CLUS_2               2                36
  CLUS_3               0                31
  CLUS_4               1                32
D75V8, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               2                26
  CLUS_3               3                65
D75V9, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               1                43
  CLUS_2               3                59
  CLUS_3               0                35
D75V10, multiclass
        clus
vv       CXORF22 MUTATED CXORF22 WILD-TYPE
  CLUS_1               2                59
  CLUS_2               1                20
  CLUS_3               1                58

Clustering(76) Variable = AFM MUTATION ANALYSIS
D76V1, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           1            75
  CLUS_2           2            83
  CLUS_3           2            78
D76V2, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           1           102
  CLUS_2           2            57
  CLUS_3           2            77
D76V3, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           1            56
  CLUS_2           3            69
  CLUS_3           0            30
  CLUS_4           1            43
D76V4, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           2            71
  CLUS_2           3            78
  CLUS_3           0            49
D76V5, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           1            86
  CLUS_2           4           104
  CLUS_3           1            78
D76V6, multiclass
[1] "Remove cluster labels:" "AFM MUTATED"           
clus
  AFM MUTATED AFM WILD-TYPE 
            1           107 
   TCGA-06-0650    TCGA-06-1804    TCGA-06-1806    TCGA-06-5408    TCGA-06-5410 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-14-0740    TCGA-14-0781    TCGA-14-0862    TCGA-14-1043    TCGA-14-1395 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-14-1450    TCGA-15-1444    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-19-5959    TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-26-6174    TCGA-28-2501    TCGA-28-2510    TCGA-28-5204    TCGA-28-5207 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-5208    TCGA-28-5209    TCGA-28-5211    TCGA-28-5213    TCGA-28-5214 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219    TCGA-28-5220 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-6450    TCGA-32-1979    TCGA-32-1980    TCGA-32-5222    TCGA-41-5651 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-41-6646    TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-74-6584    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-76-4929    TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6283 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-76-6285    TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6660 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-76-6661    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664    TCGA-81-5910 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-81-5911    TCGA-87-5896 
"AFM WILD-TYPE" "AFM WILD-TYPE" 
D76V7, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           1            40
  CLUS_2           0            38
  CLUS_3           1            30
  CLUS_4           1            32
D76V8, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           2            45
  CLUS_2           0            28
  CLUS_3           1            67
D76V9, multiclass
[1] "Remove cluster labels:" "AFM MUTATED"           
clus
  AFM MUTATED AFM WILD-TYPE 
            2           139 
   TCGA-02-0047    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0129 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157    TCGA-06-0158 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184    TCGA-06-0219 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0649 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745    TCGA-06-0747 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882    TCGA-06-1804 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386    TCGA-12-0616 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597    TCGA-12-3650 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-14-0781 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817    TCGA-14-1823 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742    TCGA-15-1444 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619    TCGA-19-2620 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960    TCGA-26-1442 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1834 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513    TCGA-28-5204 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213    TCGA-28-5215 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970    TCGA-32-1980 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634    TCGA-32-2638 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572    TCGA-41-3915 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
D76V10, multiclass
[1] "Remove cluster labels:" "AFM MUTATED"           
clus
  AFM MUTATED AFM WILD-TYPE 
            2           139 
   TCGA-02-0047    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0129 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157    TCGA-06-0158 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184    TCGA-06-0219 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0649 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745    TCGA-06-0747 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882    TCGA-06-1804 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386    TCGA-12-0616 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597    TCGA-12-3650 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-14-0781 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817    TCGA-14-1823 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742    TCGA-15-1444 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619    TCGA-19-2620 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960    TCGA-26-1442 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1834 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513    TCGA-28-5204 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213    TCGA-28-5215 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970    TCGA-32-1980 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634    TCGA-32-2638 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572    TCGA-41-3915 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" "AFM WILD-TYPE" 

Clustering(77) Variable = KRTAP20-2 MUTATION ANALYSIS
D77V1, multiclass
        clus
vv       KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE
  CLUS_1                 1                  75
  CLUS_2                 0                  85
  CLUS_3                 2                  78
D77V2, multiclass
        clus
vv       KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE
  CLUS_1                 2                 101
  CLUS_2                 0                  59
  CLUS_3                 1                  78
D77V3, multiclass
        clus
vv       KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE
  CLUS_1                 1                  56
  CLUS_2                 1                  71
  CLUS_3                 0                  30
  CLUS_4                 1                  43
D77V4, multiclass
        clus
vv       KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE
  CLUS_1                 2                  71
  CLUS_2                 1                  80
  CLUS_3                 0                  49
D77V5, multiclass
        clus
vv       KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE
  CLUS_1                 2                  85
  CLUS_2                 0                 108
  CLUS_3                 1                  78
D77V6, multiclass
[1] "Remove cluster labels:" "KRTAP20-2 MUTATED"     
clus
  KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE 
                  1                 107 
         TCGA-06-0650          TCGA-06-1804          TCGA-06-1806 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5408          TCGA-06-5410          TCGA-06-5411 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5412          TCGA-06-5413          TCGA-06-5414 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5415          TCGA-06-5417          TCGA-06-5418 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5856          TCGA-06-5858          TCGA-06-5859 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-6388          TCGA-06-6389          TCGA-06-6390 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-6391          TCGA-06-6693          TCGA-06-6694 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-6695          TCGA-06-6697          TCGA-06-6698 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-6699          TCGA-06-6700          TCGA-06-6701 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-5295          TCGA-12-5299          TCGA-12-5301 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-14-0740          TCGA-14-0781          TCGA-14-0862 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-14-1043          TCGA-14-1395          TCGA-14-1450 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-15-1444          TCGA-19-5947          TCGA-19-5950 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-19-5951          TCGA-19-5952          TCGA-19-5953 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-19-5954          TCGA-19-5955          TCGA-19-5958 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-19-5959          TCGA-19-5960          TCGA-26-1442 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-5132          TCGA-26-5133          TCGA-26-5134 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-5135          TCGA-26-5136          TCGA-26-5139 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-6173          TCGA-26-6174          TCGA-28-2501 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-2510          TCGA-28-5204          TCGA-28-5207 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5208          TCGA-28-5209          TCGA-28-5211 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5213          TCGA-28-5214          TCGA-28-5215 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5216          TCGA-28-5218          TCGA-28-5219 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5220          TCGA-28-6450          TCGA-32-1979 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-32-1980          TCGA-32-5222          TCGA-41-5651 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-41-6646          TCGA-74-6573          TCGA-74-6575 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-74-6577          TCGA-74-6578          TCGA-74-6584 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-4925          TCGA-76-4926          TCGA-76-4927 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-4929          TCGA-76-4931          TCGA-76-4932 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-4934          TCGA-76-4935          TCGA-76-6191 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-6192          TCGA-76-6193          TCGA-76-6280 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-6282          TCGA-76-6283          TCGA-76-6285 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-6286          TCGA-76-6656          TCGA-76-6657 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-6660          TCGA-76-6661          TCGA-76-6662 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-6663          TCGA-76-6664          TCGA-81-5910 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-81-5911          TCGA-87-5896 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
D77V7, multiclass
        clus
vv       KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE
  CLUS_1                 2                  39
  CLUS_2                 0                  38
  CLUS_3                 1                  30
  CLUS_4                 0                  33
D77V8, multiclass
        clus
vv       KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE
  CLUS_1                 1                  46
  CLUS_2                 2                  26
  CLUS_3                 0                  68
D77V9, multiclass
[1] "Remove cluster labels:" "KRTAP20-2 MUTATED"     
clus
  KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE 
                  2                 139 
         TCGA-02-0047          TCGA-02-0055          TCGA-02-2483 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-02-2485          TCGA-02-2486          TCGA-06-0129 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0130          TCGA-06-0132          TCGA-06-0141 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0157          TCGA-06-0158          TCGA-06-0168 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0174          TCGA-06-0178          TCGA-06-0184 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0219          TCGA-06-0238          TCGA-06-0644 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0645          TCGA-06-0646          TCGA-06-0649 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0686          TCGA-06-0743          TCGA-06-0744 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0745          TCGA-06-0747          TCGA-06-0749 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0750          TCGA-06-0882          TCGA-06-1804 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-2557          TCGA-06-2558          TCGA-06-2559 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-2561          TCGA-06-2562          TCGA-06-2563 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-2564          TCGA-06-2565          TCGA-06-2567 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-2569          TCGA-06-2570          TCGA-06-5408 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5410          TCGA-06-5411          TCGA-06-5412 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5413          TCGA-06-5414          TCGA-06-5415 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5417          TCGA-06-5418          TCGA-06-5856 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5858          TCGA-06-5859          TCGA-08-0386 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-0616          TCGA-12-0618          TCGA-12-0619 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-0821          TCGA-12-1597          TCGA-12-3650 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-3652          TCGA-12-3653          TCGA-12-5295 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-5299          TCGA-14-0781          TCGA-14-0787 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-14-0789          TCGA-14-0790          TCGA-14-0817 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-14-1823          TCGA-14-1825          TCGA-14-1829 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-14-2554          TCGA-15-0742          TCGA-15-1444 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-16-0846          TCGA-16-1045          TCGA-19-1390 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-19-2619          TCGA-19-2620          TCGA-19-2624 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-19-2625          TCGA-19-2629          TCGA-19-5960 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-1442          TCGA-26-5132          TCGA-26-5133 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-5134          TCGA-26-5135          TCGA-26-5136 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-5139          TCGA-27-1830          TCGA-27-1831 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-27-1832          TCGA-27-1834          TCGA-27-1835 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-27-1837          TCGA-27-2519          TCGA-27-2521 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-27-2523          TCGA-27-2524          TCGA-27-2526 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-27-2528          TCGA-28-1747          TCGA-28-1753 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-2499          TCGA-28-2509          TCGA-28-2510 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-2513          TCGA-28-2514          TCGA-28-5204 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5207          TCGA-28-5208          TCGA-28-5209 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5213          TCGA-28-5215          TCGA-28-5216 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5218          TCGA-28-5220          TCGA-32-1970 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-32-1980          TCGA-32-1982          TCGA-32-2615 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-32-2632          TCGA-32-2634          TCGA-32-2638 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-32-4213          TCGA-32-5222          TCGA-41-2571 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-41-2572          TCGA-41-3915          TCGA-41-4097 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-41-5651          TCGA-76-4925          TCGA-76-4926 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-4927          TCGA-76-4929          TCGA-76-4931 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-4932 
"KRTAP20-2 WILD-TYPE" 
D77V10, multiclass
[1] "Remove cluster labels:" "KRTAP20-2 MUTATED"     
clus
  KRTAP20-2 MUTATED KRTAP20-2 WILD-TYPE 
                  2                 139 
         TCGA-02-0047          TCGA-02-0055          TCGA-02-2483 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-02-2485          TCGA-02-2486          TCGA-06-0129 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0130          TCGA-06-0132          TCGA-06-0141 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0157          TCGA-06-0158          TCGA-06-0168 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0174          TCGA-06-0178          TCGA-06-0184 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0219          TCGA-06-0238          TCGA-06-0644 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0645          TCGA-06-0646          TCGA-06-0649 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0686          TCGA-06-0743          TCGA-06-0744 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0745          TCGA-06-0747          TCGA-06-0749 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-0750          TCGA-06-0882          TCGA-06-1804 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-2557          TCGA-06-2558          TCGA-06-2559 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-2561          TCGA-06-2562          TCGA-06-2563 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-2564          TCGA-06-2565          TCGA-06-2567 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-2569          TCGA-06-2570          TCGA-06-5408 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5410          TCGA-06-5411          TCGA-06-5412 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5413          TCGA-06-5414          TCGA-06-5415 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5417          TCGA-06-5418          TCGA-06-5856 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-06-5858          TCGA-06-5859          TCGA-08-0386 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-0616          TCGA-12-0618          TCGA-12-0619 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-0821          TCGA-12-1597          TCGA-12-3650 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-3652          TCGA-12-3653          TCGA-12-5295 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-12-5299          TCGA-14-0781          TCGA-14-0787 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-14-0789          TCGA-14-0790          TCGA-14-0817 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-14-1823          TCGA-14-1825          TCGA-14-1829 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-14-2554          TCGA-15-0742          TCGA-15-1444 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-16-0846          TCGA-16-1045          TCGA-19-1390 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-19-2619          TCGA-19-2620          TCGA-19-2624 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-19-2625          TCGA-19-2629          TCGA-19-5960 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-1442          TCGA-26-5132          TCGA-26-5133 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-5134          TCGA-26-5135          TCGA-26-5136 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-26-5139          TCGA-27-1830          TCGA-27-1831 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-27-1832          TCGA-27-1834          TCGA-27-1835 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-27-1837          TCGA-27-2519          TCGA-27-2521 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-27-2523          TCGA-27-2524          TCGA-27-2526 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-27-2528          TCGA-28-1747          TCGA-28-1753 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-2499          TCGA-28-2509          TCGA-28-2510 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-2513          TCGA-28-2514          TCGA-28-5204 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5207          TCGA-28-5208          TCGA-28-5209 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5213          TCGA-28-5215          TCGA-28-5216 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-28-5218          TCGA-28-5220          TCGA-32-1970 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-32-1980          TCGA-32-1982          TCGA-32-2615 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-32-2632          TCGA-32-2634          TCGA-32-2638 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-32-4213          TCGA-32-5222          TCGA-41-2571 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-41-2572          TCGA-41-3915          TCGA-41-4097 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-41-5651          TCGA-76-4925          TCGA-76-4926 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-4927          TCGA-76-4929          TCGA-76-4931 
"KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" "KRTAP20-2 WILD-TYPE" 
         TCGA-76-4932 
"KRTAP20-2 WILD-TYPE" 

Clustering(78) Variable = OTC MUTATION ANALYSIS
D78V1, multiclass
        clus
vv       OTC MUTATED OTC WILD-TYPE
  CLUS_1           2            74
  CLUS_2           1            84
  CLUS_3           0            80
D78V2, multiclass
        clus
vv       OTC MUTATED OTC WILD-TYPE
  CLUS_1           2           101
  CLUS_2           0            59
  CLUS_3           1            78
D78V3, multiclass
[1] "Remove cluster labels:" "OTC MUTATED"           
clus
  OTC MUTATED OTC WILD-TYPE 
            2           201 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0122    TCGA-06-0124 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130    TCGA-06-0137 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0139    TCGA-06-0140    TCGA-06-0141    TCGA-06-0142    TCGA-06-0145 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0151    TCGA-06-0152    TCGA-06-0154    TCGA-06-0155    TCGA-06-0157 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0166    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0174    TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0189    TCGA-06-0192    TCGA-06-0195    TCGA-06-0213    TCGA-06-0214 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0939    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5418    TCGA-08-0386    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-0688    TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-5301    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-0813    TCGA-14-0817    TCGA-14-0871    TCGA-14-1456    TCGA-14-1823 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-15-0742    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045    TCGA-16-1048 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-2631    TCGA-19-4068 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-1439    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2502    TCGA-28-2509    TCGA-28-2514    TCGA-28-5204 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213    TCGA-28-5214 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5219    TCGA-28-5220    TCGA-32-1970 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-1977    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2498    TCGA-32-2615    TCGA-32-2632 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932    TCGA-76-4934 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4935 
"OTC WILD-TYPE" 
D78V4, multiclass
[1] "Remove cluster labels:" "OTC MUTATED"           
clus
  OTC MUTATED OTC WILD-TYPE 
            2           201 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0122    TCGA-06-0124 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130    TCGA-06-0137 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0139    TCGA-06-0140    TCGA-06-0141    TCGA-06-0142    TCGA-06-0145 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0151    TCGA-06-0152    TCGA-06-0154    TCGA-06-0155    TCGA-06-0157 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0166    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0174    TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0189    TCGA-06-0192    TCGA-06-0195    TCGA-06-0213    TCGA-06-0214 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0939    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5418    TCGA-08-0386    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-0688    TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-5301    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-0813    TCGA-14-0817    TCGA-14-0871    TCGA-14-1456    TCGA-14-1823 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-15-0742    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045    TCGA-16-1048 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-2631    TCGA-19-4068 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-1439    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2502    TCGA-28-2509    TCGA-28-2514    TCGA-28-5204 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213    TCGA-28-5214 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5219    TCGA-28-5220    TCGA-32-1970 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-1977    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2498    TCGA-32-2615    TCGA-32-2632 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932    TCGA-76-4934 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4935 
"OTC WILD-TYPE" 
D78V5, multiclass
        clus
vv       OTC MUTATED OTC WILD-TYPE
  CLUS_1           1            86
  CLUS_2           0           108
  CLUS_3           2            77
D78V6, multiclass
[1] "Remove cluster labels:" "OTC MUTATED"           
clus
  OTC MUTATED OTC WILD-TYPE 
            2           106 
   TCGA-06-0650    TCGA-06-1804    TCGA-06-1806    TCGA-06-5408    TCGA-06-5410 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6693    TCGA-06-6694 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699    TCGA-06-6700 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-6701    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301    TCGA-14-0740 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0862    TCGA-14-1043    TCGA-14-1395    TCGA-14-1450 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-15-1444    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-2501    TCGA-28-2510    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5209    TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450    TCGA-32-1979 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-1980    TCGA-32-5222    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4925 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191    TCGA-76-6192 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6283    TCGA-76-6285 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6660    TCGA-76-6661 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6662    TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-87-5896 
"OTC WILD-TYPE" 
D78V7, multiclass
[1] "Remove cluster labels:" "OTC MUTATED"           
clus
  OTC MUTATED OTC WILD-TYPE 
            1           142 
   TCGA-02-0003    TCGA-02-2470    TCGA-02-2485    TCGA-06-0126    TCGA-06-0128 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0154    TCGA-06-0155    TCGA-06-0189 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0238    TCGA-06-0644    TCGA-06-0650    TCGA-06-0875    TCGA-06-0876 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0882    TCGA-06-0939 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-1804    TCGA-06-1806    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-6390    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-0692    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-3653    TCGA-12-5295    TCGA-12-5301    TCGA-14-0813    TCGA-14-0862 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-0871    TCGA-14-1823    TCGA-16-0846    TCGA-19-1390    TCGA-19-1790 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-2619    TCGA-19-2620    TCGA-19-2625    TCGA-19-2631    TCGA-19-4068 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-6173 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1836    TCGA-27-2518    TCGA-27-2528    TCGA-28-1747 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2501    TCGA-28-5208    TCGA-28-5214    TCGA-32-1970 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-4210    TCGA-32-4211 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-5222    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4926 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6282    TCGA-76-6283    TCGA-76-6285 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6656    TCGA-76-6657    TCGA-76-6660    TCGA-76-6662    TCGA-76-6663 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6664    TCGA-81-5910 
"OTC WILD-TYPE" "OTC WILD-TYPE" 
D78V8, multiclass
[1] "Remove cluster labels:" "OTC MUTATED"           
clus
  OTC MUTATED OTC WILD-TYPE 
            1           142 
   TCGA-02-0003    TCGA-02-2470    TCGA-02-2485    TCGA-06-0126    TCGA-06-0128 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0154    TCGA-06-0155    TCGA-06-0189 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0238    TCGA-06-0644    TCGA-06-0650    TCGA-06-0875    TCGA-06-0876 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0882    TCGA-06-0939 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-1804    TCGA-06-1806    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-6390    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-0692    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-3653    TCGA-12-5295    TCGA-12-5301    TCGA-14-0813    TCGA-14-0862 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-0871    TCGA-14-1823    TCGA-16-0846    TCGA-19-1390    TCGA-19-1790 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-2619    TCGA-19-2620    TCGA-19-2625    TCGA-19-2631    TCGA-19-4068 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-6173 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1836    TCGA-27-2518    TCGA-27-2528    TCGA-28-1747 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2501    TCGA-28-5208    TCGA-28-5214    TCGA-32-1970 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-4210    TCGA-32-4211 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-5222    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4926 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6282    TCGA-76-6283    TCGA-76-6285 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6656    TCGA-76-6657    TCGA-76-6660    TCGA-76-6662    TCGA-76-6663 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-6664    TCGA-81-5910 
"OTC WILD-TYPE" "OTC WILD-TYPE" 
D78V9, multiclass
[1] "Remove cluster labels:" "OTC MUTATED"           
clus
  OTC MUTATED OTC WILD-TYPE 
            2           139 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-1823    TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-15-1444    TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-2523    TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2514 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5220    TCGA-32-1970    TCGA-32-1980 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634    TCGA-32-2638 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572    TCGA-41-3915 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
D78V10, multiclass
[1] "Remove cluster labels:" "OTC MUTATED"           
clus
  OTC MUTATED OTC WILD-TYPE 
            2           139 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-14-1823    TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-15-1444    TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-27-2523    TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2514 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5220    TCGA-32-1970    TCGA-32-1980 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634    TCGA-32-2638 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572    TCGA-41-3915 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" "OTC WILD-TYPE" 

Clustering(79) Variable = TRAT1 MUTATION ANALYSIS
D79V1, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             2              83
  CLUS_3             0              80
D79V2, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             0              59
  CLUS_3             2              77
D79V3, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             1              71
  CLUS_3             1              29
  CLUS_4             0              44
D79V4, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              79
  CLUS_3             0              49
D79V5, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1             107
  CLUS_3             1              78
D79V6, multiclass
[1] "Remove cluster labels:" "TRAT1 MUTATED"         
clus
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5958 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5135      TCGA-26-5136 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-28-2501 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-28-2510      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
D79V7, multiclass
[1] "Remove cluster labels:" "TRAT1 MUTATED"         
clus
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-12-0692      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5301 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0862      TCGA-14-0871      TCGA-14-1823 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-16-0846      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2625      TCGA-19-2631      TCGA-19-4068 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5958      TCGA-19-5959 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2518      TCGA-27-2528      TCGA-28-1747 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-5208      TCGA-28-5214 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
D79V8, multiclass
[1] "Remove cluster labels:" "TRAT1 MUTATED"         
clus
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-12-0692      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5301 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0862      TCGA-14-0871      TCGA-14-1823 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-16-0846      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2625      TCGA-19-2631      TCGA-19-4068 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5958      TCGA-19-5959 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2518      TCGA-27-2528      TCGA-28-1747 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-5208      TCGA-28-5214 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
D79V9, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             1              61
  CLUS_3             2              33
D79V10, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             0              21
  CLUS_3             2              57

Clustering(80) Variable = KLK6 MUTATION ANALYSIS
D80V1, multiclass
[1] "Remove cluster labels:" "KLK6 MUTATED"          
clus
  KLK6 MUTATED KLK6 WILD-TYPE 
             1            240 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-2470 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-02-2483     TCGA-02-2485     TCGA-02-2486     TCGA-06-0122 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0124     TCGA-06-0126     TCGA-06-0128     TCGA-06-0129 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0130     TCGA-06-0132     TCGA-06-0137     TCGA-06-0139 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0152     TCGA-06-0154     TCGA-06-0155     TCGA-06-0157 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0158     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6389 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-08-0386     TCGA-12-0616 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0781     TCGA-14-0786     TCGA-14-0787 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-0789     TCGA-14-0790     TCGA-14-0813     TCGA-14-0817 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1456     TCGA-14-1823     TCGA-14-1825 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-1829     TCGA-14-2554     TCGA-14-3476     TCGA-14-4157 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-15-0742     TCGA-15-1444     TCGA-16-0846     TCGA-16-0861 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-16-1045     TCGA-16-1048     TCGA-19-1390     TCGA-19-1790 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1439     TCGA-26-1442     TCGA-26-5132 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-26-5139     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2501 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2498 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6285     TCGA-81-5910     TCGA-87-5896 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
D80V2, multiclass
[1] "Remove cluster labels:" "KLK6 MUTATED"          
clus
  KLK6 MUTATED KLK6 WILD-TYPE 
             1            240 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-2470 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-02-2483     TCGA-02-2485     TCGA-02-2486     TCGA-06-0122 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0124     TCGA-06-0126     TCGA-06-0128     TCGA-06-0129 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0130     TCGA-06-0132     TCGA-06-0137     TCGA-06-0139 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0152     TCGA-06-0154     TCGA-06-0155     TCGA-06-0157 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0158     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6389 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-08-0386     TCGA-12-0616 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0781     TCGA-14-0786     TCGA-14-0787 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-0789     TCGA-14-0790     TCGA-14-0813     TCGA-14-0817 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1456     TCGA-14-1823     TCGA-14-1825 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-1829     TCGA-14-2554     TCGA-14-3476     TCGA-14-4157 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-15-0742     TCGA-15-1444     TCGA-16-0846     TCGA-16-0861 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-16-1045     TCGA-16-1048     TCGA-19-1390     TCGA-19-1790 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1439     TCGA-26-1442     TCGA-26-5132 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-26-5139     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2501 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2498 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6285     TCGA-81-5910     TCGA-87-5896 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
D80V3, multiclass
[1] "Remove cluster labels:" "KLK6 MUTATED"          
clus
  KLK6 MUTATED KLK6 WILD-TYPE 
             1            202 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0122     TCGA-06-0124     TCGA-06-0126     TCGA-06-0128 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0137     TCGA-06-0139 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0151     TCGA-06-0152     TCGA-06-0154     TCGA-06-0155 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0157     TCGA-06-0158     TCGA-06-0166     TCGA-06-0168 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0686 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0749     TCGA-06-0750     TCGA-06-0875     TCGA-06-0876 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0877     TCGA-06-0878     TCGA-06-0879     TCGA-06-0881 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0882     TCGA-06-0939     TCGA-06-2557     TCGA-06-2558 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5418     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5299     TCGA-12-5301 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-0786     TCGA-14-0787     TCGA-14-0789     TCGA-14-0790 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0817     TCGA-14-0871     TCGA-14-1456 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-3476     TCGA-14-4157     TCGA-15-0742     TCGA-16-0846 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-16-1048     TCGA-19-1390 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-4068     TCGA-26-1439     TCGA-26-5132     TCGA-26-5133 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-5135     TCGA-26-5136     TCGA-26-5139 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1837     TCGA-27-1838 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2519     TCGA-27-2521     TCGA-27-2523 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-2524     TCGA-27-2526     TCGA-27-2527     TCGA-27-2528 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-1747     TCGA-28-1753     TCGA-28-2502     TCGA-28-2509 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-2513     TCGA-28-2514     TCGA-28-5204     TCGA-28-5207 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5209     TCGA-28-5213     TCGA-28-5214 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5220     TCGA-32-1970     TCGA-32-1977     TCGA-32-1982 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-1986     TCGA-32-1991     TCGA-32-2491     TCGA-32-2494 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-2495     TCGA-32-2498     TCGA-32-2615     TCGA-32-2632 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-2634     TCGA-32-2638     TCGA-32-4208     TCGA-32-4209 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-4213     TCGA-32-4719 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-5222     TCGA-41-2571     TCGA-41-2572     TCGA-41-2573 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-41-4097     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
D80V4, multiclass
[1] "Remove cluster labels:" "KLK6 MUTATED"          
clus
  KLK6 MUTATED KLK6 WILD-TYPE 
             1            202 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0122     TCGA-06-0124     TCGA-06-0126     TCGA-06-0128 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0137     TCGA-06-0139 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0151     TCGA-06-0152     TCGA-06-0154     TCGA-06-0155 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0157     TCGA-06-0158     TCGA-06-0166     TCGA-06-0168 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0686 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0749     TCGA-06-0750     TCGA-06-0875     TCGA-06-0876 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0877     TCGA-06-0878     TCGA-06-0879     TCGA-06-0881 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-0882     TCGA-06-0939     TCGA-06-2557     TCGA-06-2558 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5418     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5299     TCGA-12-5301 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-0786     TCGA-14-0787     TCGA-14-0789     TCGA-14-0790 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0817     TCGA-14-0871     TCGA-14-1456 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-3476     TCGA-14-4157     TCGA-15-0742     TCGA-16-0846 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-16-1048     TCGA-19-1390 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-4068     TCGA-26-1439     TCGA-26-5132     TCGA-26-5133 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-5135     TCGA-26-5136     TCGA-26-5139 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1837     TCGA-27-1838 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2519     TCGA-27-2521     TCGA-27-2523 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-27-2524     TCGA-27-2526     TCGA-27-2527     TCGA-27-2528 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-1747     TCGA-28-1753     TCGA-28-2502     TCGA-28-2509 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-2513     TCGA-28-2514     TCGA-28-5204     TCGA-28-5207 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5209     TCGA-28-5213     TCGA-28-5214 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5220     TCGA-32-1970     TCGA-32-1977     TCGA-32-1982 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-1986     TCGA-32-1991     TCGA-32-2491     TCGA-32-2494 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-2495     TCGA-32-2498     TCGA-32-2615     TCGA-32-2632 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-2634     TCGA-32-2638     TCGA-32-4208     TCGA-32-4209 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-4213     TCGA-32-4719 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-5222     TCGA-41-2571     TCGA-41-2572     TCGA-41-2573 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-41-4097     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
D80V5, multiclass
        clus
vv       KLK6 MUTATED KLK6 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0            108
  CLUS_3            4             75
D80V6, multiclass
[1] "Remove cluster labels:" "KLK6 MUTATED"          
clus
  KLK6 MUTATED KLK6 WILD-TYPE 
             2            106 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5408 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6699 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-12-5295     TCGA-12-5299 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1979     TCGA-32-1980 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-32-5222     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-6280     TCGA-76-6282     TCGA-76-6283     TCGA-76-6285 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6660 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"KLK6 WILD-TYPE" "KLK6 WILD-TYPE" 
D80V7, multiclass
        clus
vv       KLK6 MUTATED KLK6 WILD-TYPE
  CLUS_1            1             40
  CLUS_2            1             37
  CLUS_3            0             31
  CLUS_4            1             32
D80V8, multiclass
        clus
vv       KLK6 MUTATED KLK6 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            1             27
  CLUS_3            2             66
D80V9, multiclass
D80V10, multiclass

Clustering(81) Variable = OR4D5 MUTATION ANALYSIS
D81V1, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             3              82
  CLUS_3             0              80
D81V2, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             2              57
  CLUS_3             1              78
D81V3, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             1              71
  CLUS_3             0              30
  CLUS_4             0              44
D81V4, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              79
  CLUS_3             1              48
D81V5, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             3             105
  CLUS_3             1              78
D81V6, multiclass
[1] "Remove cluster labels:" "OR4D5 MUTATED"         
clus
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-2510      TCGA-28-5204      TCGA-28-5207 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
D81V7, multiclass
[1] "Remove cluster labels:" "OR4D5 MUTATED"         
clus
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-12-0692      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5301 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0862      TCGA-14-0871      TCGA-14-1823 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-16-0846      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2625      TCGA-19-2631      TCGA-19-4068 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-6173      TCGA-26-6174 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1836      TCGA-27-2518      TCGA-27-2528 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-28-1747      TCGA-28-1753      TCGA-28-2501      TCGA-28-5214 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
D81V8, multiclass
[1] "Remove cluster labels:" "OR4D5 MUTATED"         
clus
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-12-0692      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5301 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0862      TCGA-14-0871      TCGA-14-1823 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-16-0846      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2625      TCGA-19-2631      TCGA-19-4068 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-6173      TCGA-26-6174 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1836      TCGA-27-2518      TCGA-27-2528 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-28-1747      TCGA-28-1753      TCGA-28-2501      TCGA-28-5214 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
D81V9, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             1              61
  CLUS_3             2              33
D81V10, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             0              61
  CLUS_2             1              20
  CLUS_3             3              56

Clustering(82) Variable = GPX5 MUTATION ANALYSIS
D82V1, multiclass
        clus
vv       GPX5 MUTATED GPX5 WILD-TYPE
  CLUS_1            0             76
  CLUS_2            2             83
  CLUS_3            1             79
D82V2, multiclass
        clus
vv       GPX5 MUTATED GPX5 WILD-TYPE
  CLUS_1            0            103
  CLUS_2            1             58
  CLUS_3            2             77
D82V3, multiclass
[1] "Remove cluster labels:" "GPX5 MUTATED"          
clus
  GPX5 MUTATED GPX5 WILD-TYPE 
             2            201 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0122     TCGA-06-0124     TCGA-06-0126     TCGA-06-0128 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0137     TCGA-06-0139 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0151     TCGA-06-0152     TCGA-06-0154     TCGA-06-0155 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0157     TCGA-06-0158     TCGA-06-0166     TCGA-06-0168 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0686 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0749     TCGA-06-0750     TCGA-06-0875     TCGA-06-0876 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0877     TCGA-06-0878     TCGA-06-0879     TCGA-06-0881 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0882     TCGA-06-0939     TCGA-06-2557     TCGA-06-2558 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-5418     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0786 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0871     TCGA-14-1456     TCGA-14-1823 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-16-0846     TCGA-16-0861 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-16-1045     TCGA-16-1048     TCGA-19-1390     TCGA-19-1790 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-26-1439     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-27-1830 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-27-1835     TCGA-27-1836     TCGA-27-1837     TCGA-27-1838 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2519     TCGA-27-2521     TCGA-27-2523 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-27-2524     TCGA-27-2526     TCGA-27-2527     TCGA-27-2528 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1977     TCGA-32-1982     TCGA-32-1986 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-2498     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4208     TCGA-32-4209     TCGA-32-4210 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-4211     TCGA-32-4213     TCGA-32-4719     TCGA-32-5222 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2572     TCGA-41-2573     TCGA-41-2575 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4935 
"GPX5 WILD-TYPE" 
D82V4, multiclass
[1] "Remove cluster labels:" "GPX5 MUTATED"          
clus
  GPX5 MUTATED GPX5 WILD-TYPE 
             2            201 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0122     TCGA-06-0124     TCGA-06-0126     TCGA-06-0128 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0137     TCGA-06-0139 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0142     TCGA-06-0145 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0151     TCGA-06-0152     TCGA-06-0154     TCGA-06-0155 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0157     TCGA-06-0158     TCGA-06-0166     TCGA-06-0168 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0213     TCGA-06-0214 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0219     TCGA-06-0237     TCGA-06-0238 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0240     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0686 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0749     TCGA-06-0750     TCGA-06-0875     TCGA-06-0876 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0877     TCGA-06-0878     TCGA-06-0879     TCGA-06-0881 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-0882     TCGA-06-0939     TCGA-06-2557     TCGA-06-2558 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-5418     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0786 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0871     TCGA-14-1456     TCGA-14-1823 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-16-0846     TCGA-16-0861 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-16-1045     TCGA-16-1048     TCGA-19-1390     TCGA-19-1790 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-26-1439     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-27-1830 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-27-1835     TCGA-27-1836     TCGA-27-1837     TCGA-27-1838 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-27-2518     TCGA-27-2519     TCGA-27-2521     TCGA-27-2523 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-27-2524     TCGA-27-2526     TCGA-27-2527     TCGA-27-2528 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1977     TCGA-32-1982     TCGA-32-1986 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-2498     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4208     TCGA-32-4209     TCGA-32-4210 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-4211     TCGA-32-4213     TCGA-32-4719     TCGA-32-5222 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2572     TCGA-41-2573     TCGA-41-2575 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-41-3392     TCGA-41-3393     TCGA-41-3915     TCGA-41-4097 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4935 
"GPX5 WILD-TYPE" 
D82V5, multiclass
        clus
vv       GPX5 MUTATED GPX5 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1            107
  CLUS_3            0             79
D82V6, multiclass
[1] "Remove cluster labels:" "GPX5 MUTATED"          
clus
  GPX5 MUTATED GPX5 WILD-TYPE 
             1            107 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5408 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-6388     TCGA-06-6389 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-12-5295     TCGA-12-5299 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1979     TCGA-32-1980 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-32-5222     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-6280     TCGA-76-6282     TCGA-76-6283     TCGA-76-6285 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6660 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"GPX5 WILD-TYPE" "GPX5 WILD-TYPE" "GPX5 WILD-TYPE" 
D82V7, multiclass
        clus
vv       GPX5 MUTATED GPX5 WILD-TYPE
  CLUS_1            0             41
  CLUS_2            0             38
  CLUS_3            2             29
  CLUS_4            1             32
D82V8, multiclass
        clus
vv       GPX5 MUTATED GPX5 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             28
  CLUS_3            1             67
D82V9, multiclass
        clus
vv       GPX5 MUTATED GPX5 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            1             61
  CLUS_3            1             34
D82V10, multiclass
        clus
vv       GPX5 MUTATED GPX5 WILD-TYPE
  CLUS_1            1             60
  CLUS_2            1             20
  CLUS_3            1             58

Clustering(83) Variable = KRTAP4-7 MUTATION ANALYSIS
D83V1, multiclass
        clus
vv       KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE
  CLUS_1                2                 74
  CLUS_2                0                 85
  CLUS_3                1                 79
D83V2, multiclass
        clus
vv       KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE
  CLUS_1                3                100
  CLUS_2                0                 59
  CLUS_3                0                 79
D83V3, multiclass
[1] "Remove cluster labels:" "KRTAP4-7 MUTATED"      
clus
  KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE 
                 2                201 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-02-0055         TCGA-02-2470         TCGA-02-2483 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0122 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0126         TCGA-06-0128 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0129         TCGA-06-0130         TCGA-06-0137 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0139         TCGA-06-0140         TCGA-06-0141 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0142         TCGA-06-0145         TCGA-06-0151 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0152         TCGA-06-0154         TCGA-06-0155 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0166 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0168         TCGA-06-0169         TCGA-06-0173 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0188         TCGA-06-0192 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0195         TCGA-06-0213         TCGA-06-0214 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0237 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0238         TCGA-06-0240         TCGA-06-0241 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0686 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-2557 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2569         TCGA-06-2570 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5417 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5418         TCGA-08-0386         TCGA-12-0616 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0688 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-0692         TCGA-12-0821         TCGA-12-1597 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3652 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-3653         TCGA-12-5295         TCGA-12-5299 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-5301         TCGA-14-0786         TCGA-14-0787 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0813 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0871         TCGA-14-1456 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-1823         TCGA-14-1825         TCGA-14-1829 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-2554         TCGA-14-3476         TCGA-14-4157 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-15-0742         TCGA-16-0846         TCGA-16-0861 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1048         TCGA-19-1390 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-1790         TCGA-19-2619         TCGA-19-2620 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-2623         TCGA-19-2624         TCGA-19-2625 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-2629         TCGA-19-2631         TCGA-19-4068 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-1439         TCGA-26-5132         TCGA-26-5133 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5139         TCGA-27-1830         TCGA-27-1831 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1833         TCGA-27-1834 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1835         TCGA-27-1836         TCGA-27-1837 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1838         TCGA-27-2518         TCGA-27-2519 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-2521         TCGA-27-2523         TCGA-27-2524 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-2526         TCGA-27-2527         TCGA-27-2528 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1753         TCGA-28-2502 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-2509         TCGA-28-2513         TCGA-28-2514 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5213         TCGA-28-5214 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-32-1970 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1982         TCGA-32-1986 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2498         TCGA-32-2615 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4209         TCGA-32-4210 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4927 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4932         TCGA-76-4934         TCGA-76-4935 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
D83V4, multiclass
[1] "Remove cluster labels:" "KRTAP4-7 MUTATED"      
clus
  KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE 
                 2                201 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-02-0055         TCGA-02-2470         TCGA-02-2483 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0122 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0126         TCGA-06-0128 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0129         TCGA-06-0130         TCGA-06-0137 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0139         TCGA-06-0140         TCGA-06-0141 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0142         TCGA-06-0145         TCGA-06-0151 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0152         TCGA-06-0154         TCGA-06-0155 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0166 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0168         TCGA-06-0169         TCGA-06-0173 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0188         TCGA-06-0192 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0195         TCGA-06-0213         TCGA-06-0214 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0237 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0238         TCGA-06-0240         TCGA-06-0241 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0686 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-2557 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2569         TCGA-06-2570 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5417 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5418         TCGA-08-0386         TCGA-12-0616 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0688 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-0692         TCGA-12-0821         TCGA-12-1597 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3652 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-3653         TCGA-12-5295         TCGA-12-5299 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-5301         TCGA-14-0786         TCGA-14-0787 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0813 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0871         TCGA-14-1456 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-1823         TCGA-14-1825         TCGA-14-1829 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-2554         TCGA-14-3476         TCGA-14-4157 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-15-0742         TCGA-16-0846         TCGA-16-0861 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1048         TCGA-19-1390 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-1790         TCGA-19-2619         TCGA-19-2620 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-2623         TCGA-19-2624         TCGA-19-2625 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-2629         TCGA-19-2631         TCGA-19-4068 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-1439         TCGA-26-5132         TCGA-26-5133 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5139         TCGA-27-1830         TCGA-27-1831 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1833         TCGA-27-1834 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1835         TCGA-27-1836         TCGA-27-1837 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1838         TCGA-27-2518         TCGA-27-2519 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-2521         TCGA-27-2523         TCGA-27-2524 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-2526         TCGA-27-2527         TCGA-27-2528 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1753         TCGA-28-2502 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-2509         TCGA-28-2513         TCGA-28-2514 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5213         TCGA-28-5214 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-32-1970 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1982         TCGA-32-1986 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2498         TCGA-32-2615 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4209         TCGA-32-4210 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4927 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4932         TCGA-76-4934         TCGA-76-4935 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
D83V5, multiclass
        clus
vv       KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                1                107
  CLUS_3                2                 77
D83V6, multiclass
[1] "Remove cluster labels:" "KRTAP4-7 MUTATED"      
clus
  KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE 
                 1                107 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5417         TCGA-06-5418 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-15-1444         TCGA-19-5947         TCGA-19-5950 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5958         TCGA-19-5959 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5136         TCGA-26-5139         TCGA-26-6173 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-6174         TCGA-28-2501         TCGA-28-2510 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5211         TCGA-28-5213 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5214         TCGA-28-5215         TCGA-28-5216 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5218         TCGA-28-5219         TCGA-28-5220 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-6450         TCGA-32-1979         TCGA-32-1980 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-5222         TCGA-41-5651         TCGA-41-6646 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-74-6573         TCGA-74-6575         TCGA-74-6577 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-74-6578         TCGA-74-6584         TCGA-76-4925 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4927         TCGA-76-4928 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4931         TCGA-76-4932 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6283         TCGA-76-6285 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-6660         TCGA-76-6661         TCGA-76-6662 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-6663         TCGA-76-6664         TCGA-81-5910 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-81-5911         TCGA-87-5896 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
D83V7, multiclass
        clus
vv       KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE
  CLUS_1                1                 40
  CLUS_2                0                 38
  CLUS_3                0                 31
  CLUS_4                2                 31
D83V8, multiclass
        clus
vv       KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                1                 27
  CLUS_3                2                 66
D83V9, multiclass
[1] "Remove cluster labels:" "KRTAP4-7 MUTATED"      
clus
  KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE 
                 1                140 
        TCGA-02-0047         TCGA-02-0055         TCGA-02-2483 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0129 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0141 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0168 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0219         TCGA-06-0238         TCGA-06-0644 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0649 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0878         TCGA-06-0882 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-1804         TCGA-06-2557         TCGA-06-2558 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2563 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2564         TCGA-06-2565         TCGA-06-2567 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5417         TCGA-06-5418         TCGA-06-5856 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-08-0386 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-0616         TCGA-12-0618         TCGA-12-0619 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-0821         TCGA-12-1597         TCGA-12-3650 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-5299         TCGA-14-0781         TCGA-14-0787 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0817 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-1823         TCGA-14-1825         TCGA-14-1829 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-2554         TCGA-15-0742         TCGA-15-1444 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-16-0846         TCGA-16-1045         TCGA-19-1390 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2624 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-5960 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5139         TCGA-27-1830         TCGA-27-1831 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1834         TCGA-27-1835 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1837         TCGA-27-2519         TCGA-27-2521 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1747         TCGA-28-1753 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-2499         TCGA-28-2509         TCGA-28-2510 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5215         TCGA-28-5216 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5218         TCGA-28-5220         TCGA-32-1970 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-2615 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-4213         TCGA-32-5222         TCGA-41-2571 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-41-2572         TCGA-41-3915         TCGA-41-4097 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-41-5651         TCGA-76-4925         TCGA-76-4926 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4927         TCGA-76-4928         TCGA-76-4929 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4932 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
D83V10, multiclass
[1] "Remove cluster labels:" "KRTAP4-7 MUTATED"      
clus
  KRTAP4-7 MUTATED KRTAP4-7 WILD-TYPE 
                 1                140 
        TCGA-02-0047         TCGA-02-0055         TCGA-02-2483 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0129 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0141 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0168 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0219         TCGA-06-0238         TCGA-06-0644 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0649 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0878         TCGA-06-0882 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-1804         TCGA-06-2557         TCGA-06-2558 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2563 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2564         TCGA-06-2565         TCGA-06-2567 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5417         TCGA-06-5418         TCGA-06-5856 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-08-0386 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-0616         TCGA-12-0618         TCGA-12-0619 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-0821         TCGA-12-1597         TCGA-12-3650 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-12-5299         TCGA-14-0781         TCGA-14-0787 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0817 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-1823         TCGA-14-1825         TCGA-14-1829 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-14-2554         TCGA-15-0742         TCGA-15-1444 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-16-0846         TCGA-16-1045         TCGA-19-1390 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2624 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-5960 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-26-5139         TCGA-27-1830         TCGA-27-1831 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1834         TCGA-27-1835 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-1837         TCGA-27-2519         TCGA-27-2521 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1747         TCGA-28-1753 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-2499         TCGA-28-2509         TCGA-28-2510 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5215         TCGA-28-5216 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-28-5218         TCGA-28-5220         TCGA-32-1970 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-2615 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-32-4213         TCGA-32-5222         TCGA-41-2571 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-41-2572         TCGA-41-3915         TCGA-41-4097 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-41-5651         TCGA-76-4925         TCGA-76-4926 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4927         TCGA-76-4928         TCGA-76-4929 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4932 
"KRTAP4-7 WILD-TYPE" "KRTAP4-7 WILD-TYPE" 

Clustering(84) Variable = CDH9 MUTATION ANALYSIS
D84V1, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            1             75
  CLUS_2            2             83
  CLUS_3            4             76
D84V2, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            1            102
  CLUS_2            4             55
  CLUS_3            2             77
D84V3, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            1             56
  CLUS_2            2             70
  CLUS_3            2             28
  CLUS_4            1             43
D84V4, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            1             72
  CLUS_2            4             77
  CLUS_3            1             48
D84V5, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            3            105
  CLUS_3            1             78
D84V6, multiclass
[1] "Remove cluster labels:" "CDH9 MUTATED"          
clus
  CDH9 MUTATED CDH9 WILD-TYPE 
             2            106 
    TCGA-06-0650     TCGA-06-1806     TCGA-06-5408     TCGA-06-5410 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-12-5295     TCGA-12-5299 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5215 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1979     TCGA-32-1980     TCGA-32-5222 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-41-5651     TCGA-41-6646     TCGA-74-6573     TCGA-74-6575 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4925 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6280 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6286 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6660     TCGA-76-6661 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
D84V7, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            1             40
  CLUS_2            3             35
  CLUS_3            2             29
  CLUS_4            0             33
D84V8, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             28
  CLUS_3            2             66
D84V9, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            0             44
  CLUS_2            3             59
  CLUS_3            2             33
D84V10, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            2             59
  CLUS_2            2             19
  CLUS_3            1             58

Clustering(85) Variable = CDHR3 MUTATION ANALYSIS
D85V1, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             1              84
  CLUS_3             0              80
D85V2, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1              58
  CLUS_3             1              78
D85V3, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              2             201 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-02-2483      TCGA-02-2485      TCGA-02-2486      TCGA-06-0122 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0124      TCGA-06-0126      TCGA-06-0128      TCGA-06-0129 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0130      TCGA-06-0137      TCGA-06-0139      TCGA-06-0140 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0142      TCGA-06-0145      TCGA-06-0151 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0152      TCGA-06-0154      TCGA-06-0155      TCGA-06-0157 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0158      TCGA-06-0166      TCGA-06-0168      TCGA-06-0169 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0173      TCGA-06-0174      TCGA-06-0178      TCGA-06-0184 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0185      TCGA-06-0188      TCGA-06-0189      TCGA-06-0192 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0195      TCGA-06-0213      TCGA-06-0214      TCGA-06-0216 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0219      TCGA-06-0237      TCGA-06-0238      TCGA-06-0240 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0241      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0648      TCGA-06-0649      TCGA-06-0686      TCGA-06-0743 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0744      TCGA-06-0745      TCGA-06-0747      TCGA-06-0749 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0881      TCGA-06-0882 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0939      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-1597      TCGA-12-3649 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0786      TCGA-14-0787 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-0789      TCGA-14-0790      TCGA-14-0813      TCGA-14-0817 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1456      TCGA-14-1823      TCGA-14-1825 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-14-3476      TCGA-14-4157 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-15-0742      TCGA-16-0846      TCGA-16-0861      TCGA-16-1045 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-16-1048      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2623      TCGA-19-2624      TCGA-19-2625 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-2629      TCGA-19-2631      TCGA-19-4068      TCGA-26-1439 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1835 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-1837      TCGA-27-1838      TCGA-27-2518 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2527      TCGA-27-2528      TCGA-28-1747 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1977      TCGA-32-1982      TCGA-32-1986 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-2498      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4208      TCGA-32-4209      TCGA-32-4210 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-4213      TCGA-32-4719      TCGA-32-5222 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-2573      TCGA-41-2575 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4935 
"CDHR3 WILD-TYPE" 
D85V4, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              2             201 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-02-2483      TCGA-02-2485      TCGA-02-2486      TCGA-06-0122 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0124      TCGA-06-0126      TCGA-06-0128      TCGA-06-0129 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0130      TCGA-06-0137      TCGA-06-0139      TCGA-06-0140 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0142      TCGA-06-0145      TCGA-06-0151 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0152      TCGA-06-0154      TCGA-06-0155      TCGA-06-0157 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0158      TCGA-06-0166      TCGA-06-0168      TCGA-06-0169 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0173      TCGA-06-0174      TCGA-06-0178      TCGA-06-0184 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0185      TCGA-06-0188      TCGA-06-0189      TCGA-06-0192 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0195      TCGA-06-0213      TCGA-06-0214      TCGA-06-0216 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0219      TCGA-06-0237      TCGA-06-0238      TCGA-06-0240 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0241      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0648      TCGA-06-0649      TCGA-06-0686      TCGA-06-0743 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0744      TCGA-06-0745      TCGA-06-0747      TCGA-06-0749 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0881      TCGA-06-0882 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0939      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-1597      TCGA-12-3649 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0786      TCGA-14-0787 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-0789      TCGA-14-0790      TCGA-14-0813      TCGA-14-0817 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1456      TCGA-14-1823      TCGA-14-1825 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-14-3476      TCGA-14-4157 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-15-0742      TCGA-16-0846      TCGA-16-0861      TCGA-16-1045 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-16-1048      TCGA-19-1390      TCGA-19-1790      TCGA-19-2619 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2623      TCGA-19-2624      TCGA-19-2625 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-2629      TCGA-19-2631      TCGA-19-4068      TCGA-26-1439 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1835 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-1837      TCGA-27-1838      TCGA-27-2518 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2527      TCGA-27-2528      TCGA-28-1747 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1977      TCGA-32-1982      TCGA-32-1986 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-2498      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4208      TCGA-32-4209      TCGA-32-4210 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-4213      TCGA-32-4719      TCGA-32-5222 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-2573      TCGA-41-2575 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4935 
"CDHR3 WILD-TYPE" 
D85V5, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0             108
  CLUS_3             2              77
D85V6, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5413      TCGA-06-5414 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-12-5295      TCGA-12-5299 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0862 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-1043      TCGA-14-1395      TCGA-14-1450      TCGA-15-1444 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5135      TCGA-26-5136 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-28-2501 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2510      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
D85V7, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2485      TCGA-06-0126      TCGA-06-0128 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0129      TCGA-06-0130      TCGA-06-0154      TCGA-06-0155 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0189      TCGA-06-0238      TCGA-06-0644      TCGA-06-0650 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5859      TCGA-06-6388      TCGA-06-6389      TCGA-06-6390 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6391      TCGA-06-6693      TCGA-06-6694      TCGA-06-6695 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6697      TCGA-06-6698      TCGA-06-6699      TCGA-06-6700 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6701      TCGA-08-0386      TCGA-12-0692      TCGA-12-1597 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5301      TCGA-14-0813      TCGA-14-0862 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1823      TCGA-16-0846      TCGA-19-1390 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2625 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5953      TCGA-19-5954 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-6173      TCGA-26-6174      TCGA-27-1830      TCGA-27-1831 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1836 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2518      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-5208      TCGA-28-5214      TCGA-32-1970 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-4210 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-5222      TCGA-41-2573      TCGA-41-2575 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-81-5910 
"CDHR3 WILD-TYPE" 
D85V8, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2485      TCGA-06-0126      TCGA-06-0128 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0129      TCGA-06-0130      TCGA-06-0154      TCGA-06-0155 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0189      TCGA-06-0238      TCGA-06-0644      TCGA-06-0650 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5859      TCGA-06-6388      TCGA-06-6389      TCGA-06-6390 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6391      TCGA-06-6693      TCGA-06-6694      TCGA-06-6695 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6697      TCGA-06-6698      TCGA-06-6699      TCGA-06-6700 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-6701      TCGA-08-0386      TCGA-12-0692      TCGA-12-1597 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5301      TCGA-14-0813      TCGA-14-0862 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1823      TCGA-16-0846      TCGA-19-1390 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2625 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5953      TCGA-19-5954 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-6173      TCGA-26-6174      TCGA-27-1830      TCGA-27-1831 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1833      TCGA-27-1834      TCGA-27-1836 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2518      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-5208      TCGA-28-5214      TCGA-32-1970 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-4210 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-5222      TCGA-41-2573      TCGA-41-2575 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-81-5910 
"CDHR3 WILD-TYPE" 
D85V9, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5859      TCGA-08-0386      TCGA-12-0616      TCGA-12-0618 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-1597      TCGA-12-3650      TCGA-12-3652 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-14-0781 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0817 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
D85V10, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-06-5859      TCGA-08-0386      TCGA-12-0616      TCGA-12-0618 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-1597      TCGA-12-3650      TCGA-12-3652 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-14-0781 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0817 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 

Clustering(86) Variable = OR4P4 MUTATION ANALYSIS
D86V1, multiclass
[1] "Remove cluster labels:" "OR4P4 MUTATED"         
clus
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              2             239 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-2470 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-02-2483      TCGA-02-2485      TCGA-02-2486      TCGA-06-0122 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0124      TCGA-06-0126      TCGA-06-0128      TCGA-06-0129 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0130      TCGA-06-0132      TCGA-06-0137      TCGA-06-0139 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0140      TCGA-06-0141      TCGA-06-0142      TCGA-06-0145 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0152      TCGA-06-0154      TCGA-06-0155      TCGA-06-0157 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0158      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0213      TCGA-06-0214 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0219      TCGA-06-0237      TCGA-06-0238 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0240      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6389 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-08-0386      TCGA-12-0616 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0781      TCGA-14-0786      TCGA-14-0787 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0789      TCGA-14-0790      TCGA-14-0813      TCGA-14-0817 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1456      TCGA-14-1823      TCGA-14-1825 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-14-3476      TCGA-14-4157 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-0861 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-16-1045      TCGA-16-1048      TCGA-19-1390      TCGA-19-1790 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2624      TCGA-19-2625 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-2629      TCGA-19-2631      TCGA-19-4068      TCGA-19-5947 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5954 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-1439      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2527      TCGA-27-2528 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-1747      TCGA-28-1753      TCGA-28-2501      TCGA-28-2502 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-2509      TCGA-28-2510      TCGA-28-2513      TCGA-28-2514 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5213      TCGA-28-5214      TCGA-28-5215      TCGA-28-5216 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5219      TCGA-28-5220      TCGA-28-6450 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1977      TCGA-32-1979      TCGA-32-1980 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-2491 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-2494      TCGA-32-2495      TCGA-32-2498      TCGA-32-2615 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-2632      TCGA-32-2634      TCGA-32-2638      TCGA-32-4208 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-4209      TCGA-32-4210      TCGA-32-4211      TCGA-32-4213 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-4719      TCGA-32-5222      TCGA-41-2571      TCGA-41-2572 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-41-3392      TCGA-41-3393 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-3915      TCGA-41-4097      TCGA-41-5651      TCGA-76-4925 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-4934      TCGA-76-4935 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6191      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6285      TCGA-81-5910      TCGA-87-5896 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
D86V2, multiclass
[1] "Remove cluster labels:" "OR4P4 MUTATED"         
clus
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              2             239 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-2470 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-02-2483      TCGA-02-2485      TCGA-02-2486      TCGA-06-0122 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0124      TCGA-06-0126      TCGA-06-0128      TCGA-06-0129 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0130      TCGA-06-0132      TCGA-06-0137      TCGA-06-0139 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0140      TCGA-06-0141      TCGA-06-0142      TCGA-06-0145 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0152      TCGA-06-0154      TCGA-06-0155      TCGA-06-0157 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0158      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0213      TCGA-06-0214 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0219      TCGA-06-0237      TCGA-06-0238 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0240      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6389 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-08-0386      TCGA-12-0616 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0781      TCGA-14-0786      TCGA-14-0787 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0789      TCGA-14-0790      TCGA-14-0813      TCGA-14-0817 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1456      TCGA-14-1823      TCGA-14-1825 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-14-3476      TCGA-14-4157 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-0861 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-16-1045      TCGA-16-1048      TCGA-19-1390      TCGA-19-1790 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2624      TCGA-19-2625 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-2629      TCGA-19-2631      TCGA-19-4068      TCGA-19-5947 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5954 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5955      TCGA-19-5958      TCGA-19-5959      TCGA-19-5960 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-1439      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2527      TCGA-27-2528 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-1747      TCGA-28-1753      TCGA-28-2501      TCGA-28-2502 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-2509      TCGA-28-2510      TCGA-28-2513      TCGA-28-2514 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5213      TCGA-28-5214      TCGA-28-5215      TCGA-28-5216 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5219      TCGA-28-5220      TCGA-28-6450 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1977      TCGA-32-1979      TCGA-32-1980 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-2491 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-2494      TCGA-32-2495      TCGA-32-2498      TCGA-32-2615 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-2632      TCGA-32-2634      TCGA-32-2638      TCGA-32-4208 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-4209      TCGA-32-4210      TCGA-32-4211      TCGA-32-4213 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-4719      TCGA-32-5222      TCGA-41-2571      TCGA-41-2572 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-41-3392      TCGA-41-3393 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-3915      TCGA-41-4097      TCGA-41-5651      TCGA-76-4925 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-4934      TCGA-76-4935 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6191      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6285      TCGA-81-5910      TCGA-87-5896 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
D86V3, multiclass
[1] "Remove cluster labels:" "OR4P4 MUTATED"         
clus
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              2             201 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0122      TCGA-06-0124      TCGA-06-0126      TCGA-06-0128 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0129      TCGA-06-0130      TCGA-06-0137      TCGA-06-0139 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0140      TCGA-06-0141      TCGA-06-0142      TCGA-06-0145 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0151      TCGA-06-0152      TCGA-06-0154      TCGA-06-0155 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0157      TCGA-06-0158      TCGA-06-0166      TCGA-06-0168 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0213      TCGA-06-0214 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0219      TCGA-06-0237      TCGA-06-0238 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0240      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0686 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0749      TCGA-06-0750      TCGA-06-0875      TCGA-06-0876 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0877      TCGA-06-0878      TCGA-06-0879      TCGA-06-0881 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0882      TCGA-06-0939      TCGA-06-2557      TCGA-06-2558 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5418      TCGA-08-0386      TCGA-12-0616      TCGA-12-0618 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0688      TCGA-12-0692      TCGA-12-0821 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-12-5301 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0786      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0817      TCGA-14-0871      TCGA-14-1456 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-3476      TCGA-14-4157      TCGA-15-0742      TCGA-16-0846 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-16-0861      TCGA-16-1045      TCGA-16-1048      TCGA-19-1390 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-2631      TCGA-19-4068 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-1439      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-27-1830 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1836      TCGA-27-1837      TCGA-27-1838 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2527      TCGA-27-2528      TCGA-28-1747 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1977      TCGA-32-1982      TCGA-32-1986 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-2498      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4208      TCGA-32-4209      TCGA-32-4210 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-4213      TCGA-32-4719      TCGA-32-5222 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-2573      TCGA-41-2575 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4935 
"OR4P4 WILD-TYPE" 
D86V4, multiclass
[1] "Remove cluster labels:" "OR4P4 MUTATED"         
clus
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              2             201 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0122      TCGA-06-0124      TCGA-06-0126      TCGA-06-0128 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0129      TCGA-06-0130      TCGA-06-0137      TCGA-06-0139 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0140      TCGA-06-0141      TCGA-06-0142      TCGA-06-0145 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0151      TCGA-06-0152      TCGA-06-0154      TCGA-06-0155 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0157      TCGA-06-0158      TCGA-06-0166      TCGA-06-0168 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0213      TCGA-06-0214 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0219      TCGA-06-0237      TCGA-06-0238 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0240      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0686 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0749      TCGA-06-0750      TCGA-06-0875      TCGA-06-0876 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0877      TCGA-06-0878      TCGA-06-0879      TCGA-06-0881 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0882      TCGA-06-0939      TCGA-06-2557      TCGA-06-2558 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5418      TCGA-08-0386      TCGA-12-0616      TCGA-12-0618 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0688      TCGA-12-0692      TCGA-12-0821 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-12-5301 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0786      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0817      TCGA-14-0871      TCGA-14-1456 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-3476      TCGA-14-4157      TCGA-15-0742      TCGA-16-0846 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-16-0861      TCGA-16-1045      TCGA-16-1048      TCGA-19-1390 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-2631      TCGA-19-4068 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-1439      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-27-1830 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1836      TCGA-27-1837      TCGA-27-1838 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2527      TCGA-27-2528      TCGA-28-1747 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1977      TCGA-32-1982      TCGA-32-1986 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-2498      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4208      TCGA-32-4209      TCGA-32-4210 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-4213      TCGA-32-4719      TCGA-32-5222 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-2573      TCGA-41-2575 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4935 
"OR4P4 WILD-TYPE" 
D86V5, multiclass
        clus
vv       OR4P4 MUTATED OR4P4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1             107
  CLUS_3             0              79
D86V6, multiclass
[1] "Remove cluster labels:" "OR4P4 MUTATED"         
clus
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-12-5295      TCGA-12-5299 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0862 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-1043      TCGA-14-1395      TCGA-14-1450      TCGA-15-1444 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5135      TCGA-26-5136 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-28-2501 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-2510      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
D86V7, multiclass
[1] "Remove cluster labels:" "OR4P4 MUTATED"         
clus
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5301      TCGA-14-0813 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-0871      TCGA-14-1823      TCGA-16-0846 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-1790      TCGA-19-2619      TCGA-19-2620 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2631      TCGA-19-4068      TCGA-19-5947 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-5208      TCGA-28-5214      TCGA-32-1970 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-4210 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-5222      TCGA-41-2573      TCGA-41-2575 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-81-5910 
"OR4P4 WILD-TYPE" 
D86V8, multiclass
[1] "Remove cluster labels:" "OR4P4 MUTATED"         
clus
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              2             141 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0154 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0155      TCGA-06-0189      TCGA-06-0238      TCGA-06-0644 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0875      TCGA-06-0876      TCGA-06-0877 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0882      TCGA-06-0939 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2570      TCGA-06-5408 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5301      TCGA-14-0813 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-0871      TCGA-14-1823      TCGA-16-0846 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-1790      TCGA-19-2619      TCGA-19-2620 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2631      TCGA-19-4068      TCGA-19-5947 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-5208      TCGA-28-5214      TCGA-32-1970 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-1991      TCGA-32-4210 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-32-4211      TCGA-32-5222      TCGA-41-2573      TCGA-41-2575 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-3392      TCGA-41-3393      TCGA-41-3915      TCGA-41-4097 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-41-5651      TCGA-41-6646      TCGA-74-6573      TCGA-74-6575 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4926 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-6192      TCGA-76-6193      TCGA-76-6282 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6283      TCGA-76-6285      TCGA-76-6656      TCGA-76-6657 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-76-6660      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-81-5910 
"OR4P4 WILD-TYPE" 
D86V9, multiclass
D86V10, multiclass

Clustering(87) Variable = OR52M1 MUTATION ANALYSIS
D87V1, multiclass
        clus
vv       OR52M1 MUTATED OR52M1 WILD-TYPE
  CLUS_1              2               74
  CLUS_2              2               83
  CLUS_3              0               80
D87V2, multiclass
        clus
vv       OR52M1 MUTATED OR52M1 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1               58
  CLUS_3              1               78
D87V3, multiclass
        clus
vv       OR52M1 MUTATED OR52M1 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              0               72
  CLUS_3              0               30
  CLUS_4              2               42
D87V4, multiclass
        clus
vv       OR52M1 MUTATED OR52M1 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              0               81
  CLUS_3              0               49
D87V5, multiclass
        clus
vv       OR52M1 MUTATED OR52M1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0              108
  CLUS_3              1               78
D87V6, multiclass
[1] "Remove cluster labels:" "OR52M1 MUTATED"        
clus
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               1              107 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0740       TCGA-14-0781 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-15-1444       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-26-1442       TCGA-26-5132 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5135       TCGA-26-5136 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-26-5139       TCGA-26-6173       TCGA-26-6174       TCGA-28-2501 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-28-2510       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1979       TCGA-32-1980 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-32-5222       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-4935       TCGA-76-6191       TCGA-76-6192       TCGA-76-6193 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-6280       TCGA-76-6282       TCGA-76-6283       TCGA-76-6285 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6660 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
D87V7, multiclass
[1] "Remove cluster labels:" "OR52M1 MUTATED"        
clus
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0882       TCGA-06-0939 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2570       TCGA-06-5408 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-12-0692       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5301 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0862       TCGA-14-0871       TCGA-14-1823 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-16-0846       TCGA-19-1390       TCGA-19-1790       TCGA-19-2619 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2625       TCGA-19-2631       TCGA-19-4068 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-5959       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-6173       TCGA-26-6174       TCGA-27-1830 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1833       TCGA-27-1834 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-27-1836       TCGA-27-2518       TCGA-27-2528       TCGA-28-1747 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2501       TCGA-28-5208       TCGA-28-5214 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1982       TCGA-32-1991       TCGA-32-4210 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-5222       TCGA-41-2573       TCGA-41-2575 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-81-5910 
"OR52M1 WILD-TYPE" 
D87V8, multiclass
[1] "Remove cluster labels:" "OR52M1 MUTATED"        
clus
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0882       TCGA-06-0939 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2570       TCGA-06-5408 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-12-0692       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5301 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0862       TCGA-14-0871       TCGA-14-1823 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-16-0846       TCGA-19-1390       TCGA-19-1790       TCGA-19-2619 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2625       TCGA-19-2631       TCGA-19-4068 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-19-5959       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-6173       TCGA-26-6174       TCGA-27-1830 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1833       TCGA-27-1834 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-27-1836       TCGA-27-2518       TCGA-27-2528       TCGA-28-1747 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2501       TCGA-28-5208       TCGA-28-5214 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1982       TCGA-32-1991       TCGA-32-4210 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-5222       TCGA-41-2573       TCGA-41-2575 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" "OR52M1 WILD-TYPE" 
      TCGA-81-5910 
"OR52M1 WILD-TYPE" 
D87V9, multiclass
        clus
vv       OR52M1 MUTATED OR52M1 WILD-TYPE
  CLUS_1              1               43
  CLUS_2              1               61
  CLUS_3              1               34
D87V10, multiclass
        clus
vv       OR52M1 MUTATED OR52M1 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              0               21
  CLUS_3              2               57

Clustering(88) Variable = KLF17 MUTATION ANALYSIS
D88V1, multiclass
        clus
vv       KLF17 MUTATED KLF17 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             3              82
  CLUS_3             1              79
D88V2, multiclass
        clus
vv       KLF17 MUTATED KLF17 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1              58
  CLUS_3             3              76
D88V3, multiclass
        clus
vv       KLF17 MUTATED KLF17 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             1              71
  CLUS_3             0              30
  CLUS_4             2              42
D88V4, multiclass
        clus
vv       KLF17 MUTATED KLF17 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              80
  CLUS_3             1              48
D88V5, multiclass
        clus
vv       KLF17 MUTATED KLF17 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3             105
  CLUS_3             1              78
D88V6, multiclass
[1] "Remove cluster labels:" "KLF17 MUTATED"         
clus
  KLF17 MUTATED KLF17 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-2510      TCGA-28-5204      TCGA-28-5207 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5211      TCGA-28-5213 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-5214      TCGA-28-5215      TCGA-28-5216      TCGA-28-5218 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-5219      TCGA-28-5220      TCGA-28-6450      TCGA-32-1979 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-5222      TCGA-41-5651      TCGA-41-6646 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6193 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
D88V7, multiclass
        clus
vv       KLF17 MUTATED KLF17 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             2              36
  CLUS_3             0              31
  CLUS_4             1              32
D88V8, multiclass
        clus
vv       KLF17 MUTATED KLF17 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              28
  CLUS_3             3              65
D88V9, multiclass
[1] "Remove cluster labels:" "KLF17 MUTATED"         
clus
  KLF17 MUTATED KLF17 WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0821      TCGA-12-1597      TCGA-12-3650 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-16-1045      TCGA-19-1390      TCGA-19-2619      TCGA-19-2620 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-5960 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-27-1830 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1834      TCGA-27-1835 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2528      TCGA-28-1747 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
D88V10, multiclass
[1] "Remove cluster labels:" "KLF17 MUTATED"         
clus
  KLF17 MUTATED KLF17 WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0821      TCGA-12-1597      TCGA-12-3650 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-16-1045      TCGA-19-1390      TCGA-19-2619      TCGA-19-2620 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-5960 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-27-1830 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1834      TCGA-27-1835 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2528      TCGA-28-1747 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" "KLF17 WILD-TYPE" 

Clustering(89) Variable = OR8J3 MUTATION ANALYSIS
D89V1, multiclass
        clus
vv       OR8J3 MUTATED OR8J3 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             1              84
  CLUS_3             1              79
D89V2, multiclass
        clus
vv       OR8J3 MUTATED OR8J3 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1              58
  CLUS_3             2              77
D89V3, multiclass
        clus
vv       OR8J3 MUTATED OR8J3 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             1              71
  CLUS_3             1              29
  CLUS_4             2              42
D89V4, multiclass
        clus
vv       OR8J3 MUTATED OR8J3 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              81
  CLUS_3             2              47
D89V5, multiclass
        clus
vv       OR8J3 MUTATED OR8J3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0             108
  CLUS_3             2              77
D89V6, multiclass
D89V7, multiclass
        clus
vv       OR8J3 MUTATED OR8J3 WILD-TYPE
  CLUS_1             2              39
  CLUS_2             0              38
  CLUS_3             0              31
  CLUS_4             1              32
D89V8, multiclass
        clus
vv       OR8J3 MUTATED OR8J3 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              27
  CLUS_3             2              66
D89V9, multiclass
[1] "Remove cluster labels:" "OR8J3 MUTATED"         
clus
  OR8J3 MUTATED OR8J3 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0174 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0178      TCGA-06-0184      TCGA-06-0219      TCGA-06-0238 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0645      TCGA-06-0646      TCGA-06-0649 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0878 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5856      TCGA-06-5858      TCGA-06-5859 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3650      TCGA-12-3652 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-14-0781 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0817 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
D89V10, multiclass
[1] "Remove cluster labels:" "OR8J3 MUTATED"         
clus
  OR8J3 MUTATED OR8J3 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0174 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0178      TCGA-06-0184      TCGA-06-0219      TCGA-06-0238 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0645      TCGA-06-0646      TCGA-06-0649 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0878 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5856      TCGA-06-5858      TCGA-06-5859 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3650      TCGA-12-3652 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5299      TCGA-14-0781 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0817 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" "OR8J3 WILD-TYPE" 

Clustering(90) Variable = AP3S1 MUTATION ANALYSIS
D90V1, multiclass
        clus
vv       AP3S1 MUTATED AP3S1 WILD-TYPE
  CLUS_1             0              76
  CLUS_2             1              84
  CLUS_3             2              78
D90V2, multiclass
        clus
vv       AP3S1 MUTATED AP3S1 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1              58
  CLUS_3             1              78
D90V3, multiclass
        clus
vv       AP3S1 MUTATED AP3S1 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             2              70
  CLUS_3             0              30
  CLUS_4             1              43
D90V4, multiclass
        clus
vv       AP3S1 MUTATED AP3S1 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             1              80
  CLUS_3             1              48
D90V5, multiclass
        clus
vv       AP3S1 MUTATED AP3S1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             2             106
  CLUS_3             1              78
D90V6, multiclass
D90V7, multiclass
[1] "Remove cluster labels:" "AP3S1 MUTATED"         
clus
  AP3S1 MUTATED AP3S1 WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0155 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0189      TCGA-06-0238      TCGA-06-0644      TCGA-06-0650 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5301      TCGA-14-0813 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-0871      TCGA-14-1823      TCGA-16-0846 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-1790      TCGA-19-2619      TCGA-19-2620 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2631      TCGA-19-4068      TCGA-19-5947 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2518      TCGA-27-2528      TCGA-28-1747 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-5208      TCGA-28-5214 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
D90V8, multiclass
[1] "Remove cluster labels:" "AP3S1 MUTATED"         
clus
  AP3S1 MUTATED AP3S1 WILD-TYPE 
              1             142 
     TCGA-02-0003      TCGA-02-2470      TCGA-02-2485      TCGA-06-0126 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0155 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0189      TCGA-06-0238      TCGA-06-0644      TCGA-06-0650 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-08-0386      TCGA-12-0692 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5295      TCGA-12-5301      TCGA-14-0813 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-0871      TCGA-14-1823      TCGA-16-0846 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-1790      TCGA-19-2619      TCGA-19-2620 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2631      TCGA-19-4068      TCGA-19-5947 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-5950      TCGA-19-5951      TCGA-19-5952      TCGA-19-5953 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-5954      TCGA-19-5955      TCGA-19-5958      TCGA-19-5959 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-1836      TCGA-27-2518      TCGA-27-2528      TCGA-28-1747 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2501      TCGA-28-5208      TCGA-28-5214 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-32-1970      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-32-4210      TCGA-32-4211      TCGA-32-5222      TCGA-41-2573 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-41-2575      TCGA-41-3392      TCGA-41-3393      TCGA-41-3915 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-41-4097      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-6192      TCGA-76-6193 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6283      TCGA-76-6285      TCGA-76-6656 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6660      TCGA-76-6662      TCGA-76-6663 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
D90V9, multiclass
[1] "Remove cluster labels:" "AP3S1 MUTATED"         
clus
  AP3S1 MUTATED AP3S1 WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0781      TCGA-14-0787      TCGA-14-0789 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0817      TCGA-14-1823      TCGA-14-1825 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-15-0742      TCGA-15-1444 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-1045      TCGA-19-1390      TCGA-19-2619 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2624      TCGA-19-2625      TCGA-19-2629 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1834 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1837      TCGA-27-2519      TCGA-27-2521 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2528      TCGA-28-1747 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
D90V10, multiclass
[1] "Remove cluster labels:" "AP3S1 MUTATED"         
clus
  AP3S1 MUTATED AP3S1 WILD-TYPE 
              1             140 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0882      TCGA-06-1804      TCGA-06-2557 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2558      TCGA-06-2559      TCGA-06-2561      TCGA-06-2562 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2563      TCGA-06-2564      TCGA-06-2565      TCGA-06-2567 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-2569      TCGA-06-2570      TCGA-06-5408      TCGA-06-5410 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5411      TCGA-06-5412      TCGA-06-5413      TCGA-06-5414 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-08-0386      TCGA-12-0616 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0821      TCGA-12-1597 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-3650      TCGA-12-3652      TCGA-12-3653      TCGA-12-5295 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-12-5299      TCGA-14-0781      TCGA-14-0787      TCGA-14-0789 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0817      TCGA-14-1823      TCGA-14-1825 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-14-1829      TCGA-14-2554      TCGA-15-0742      TCGA-15-1444 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-1045      TCGA-19-1390      TCGA-19-2619 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-2620      TCGA-19-2624      TCGA-19-2625      TCGA-19-2629 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5135      TCGA-26-5136      TCGA-26-5139 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1834 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1837      TCGA-27-2519      TCGA-27-2521 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2528      TCGA-28-1747 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-1753      TCGA-28-2499      TCGA-28-2509      TCGA-28-2510 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5213      TCGA-28-5215 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5220      TCGA-32-1970 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-2615      TCGA-32-2632 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-32-2634      TCGA-32-2638      TCGA-32-4213      TCGA-32-5222 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2572      TCGA-41-3915      TCGA-41-4097 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-41-5651      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" "AP3S1 WILD-TYPE" 

Clustering(91) Variable = ST6GAL2 MUTATION ANALYSIS
D91V1, multiclass
        clus
vv       ST6GAL2 MUTATED ST6GAL2 WILD-TYPE
  CLUS_1               2                74
  CLUS_2               2                83
  CLUS_3               2                78
D91V2, multiclass
        clus
vv       ST6GAL2 MUTATED ST6GAL2 WILD-TYPE
  CLUS_1               2               101
  CLUS_2               2                57
  CLUS_3               2                77
D91V3, multiclass
        clus
vv       ST6GAL2 MUTATED ST6GAL2 WILD-TYPE
  CLUS_1               0                57
  CLUS_2               3                69
  CLUS_3               1                29
  CLUS_4               2                42
D91V4, multiclass
        clus
vv       ST6GAL2 MUTATED ST6GAL2 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               2                79
  CLUS_3               2                47
D91V5, multiclass
        clus
vv       ST6GAL2 MUTATED ST6GAL2 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               2               106
  CLUS_3               2                77
D91V6, multiclass
[1] "Remove cluster labels:" "ST6GAL2 MUTATED"       
clus
  ST6GAL2 MUTATED ST6GAL2 WILD-TYPE 
                1               107 
       TCGA-06-0650        TCGA-06-1804        TCGA-06-1806        TCGA-06-5408 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5417        TCGA-06-5418 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-12-5295 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-12-5299        TCGA-12-5301        TCGA-14-0740        TCGA-14-0781 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-14-0862        TCGA-14-1043        TCGA-14-1395        TCGA-14-1450 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-15-1444        TCGA-19-5947        TCGA-19-5950        TCGA-19-5951 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-5952        TCGA-19-5953        TCGA-19-5954        TCGA-19-5955 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-5958        TCGA-19-5959        TCGA-19-5960        TCGA-26-1442 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-28-2501        TCGA-28-2510        TCGA-28-5204        TCGA-28-5207 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5209        TCGA-28-5211        TCGA-28-5213 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-28-5214        TCGA-28-5216        TCGA-28-5218        TCGA-28-5219 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-28-5220        TCGA-28-6450        TCGA-32-1979        TCGA-32-1980 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-32-5222        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6584 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-4925        TCGA-76-4926        TCGA-76-4927        TCGA-76-4928 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4932        TCGA-76-4934 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6283        TCGA-76-6285 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-6286        TCGA-76-6656        TCGA-76-6657        TCGA-76-6660 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-6661        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
D91V7, multiclass
[1] "Remove cluster labels:" "ST6GAL2 MUTATED"       
clus
  ST6GAL2 MUTATED ST6GAL2 WILD-TYPE 
                2               141 
       TCGA-02-0003        TCGA-02-2470        TCGA-02-2485        TCGA-06-0126 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-0128        TCGA-06-0129        TCGA-06-0130        TCGA-06-0154 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-0155        TCGA-06-0189        TCGA-06-0238        TCGA-06-0644 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0875        TCGA-06-0876        TCGA-06-0877 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-0878        TCGA-06-0879        TCGA-06-0882        TCGA-06-0939 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-1804        TCGA-06-1806        TCGA-06-2557        TCGA-06-2558 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-2559        TCGA-06-2562        TCGA-06-2563        TCGA-06-2564 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-2565        TCGA-06-2567        TCGA-06-5408        TCGA-06-5410 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5411        TCGA-06-5412        TCGA-06-5413        TCGA-06-5414 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5415        TCGA-06-5417        TCGA-06-5418        TCGA-06-5856 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5858        TCGA-06-5859        TCGA-06-6388        TCGA-06-6389 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6390        TCGA-06-6391        TCGA-06-6693        TCGA-06-6694 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6695        TCGA-06-6697        TCGA-06-6698        TCGA-06-6699 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6700        TCGA-06-6701        TCGA-08-0386        TCGA-12-0692 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3652        TCGA-12-3653 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-12-5295        TCGA-12-5301        TCGA-14-0813        TCGA-14-0862 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1823        TCGA-16-0846        TCGA-19-1390 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-1790        TCGA-19-2619        TCGA-19-2620        TCGA-19-2625 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4068        TCGA-19-5947        TCGA-19-5950 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5958        TCGA-19-5959        TCGA-19-5960 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-26-1442        TCGA-26-5132        TCGA-26-5133        TCGA-26-5134 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-26-6173        TCGA-26-6174        TCGA-27-1830        TCGA-27-1831 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-27-1832        TCGA-27-1833        TCGA-27-1834        TCGA-27-1836 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2528        TCGA-28-1747        TCGA-28-1753 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-28-2501        TCGA-28-5208        TCGA-28-5214        TCGA-32-1970 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1991        TCGA-32-4210 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-32-4211        TCGA-32-5222        TCGA-41-2573        TCGA-41-2575 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-41-3392        TCGA-41-3393        TCGA-41-3915        TCGA-41-4097 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-41-5651        TCGA-41-6646        TCGA-74-6573        TCGA-74-6575 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-74-6577        TCGA-74-6578        TCGA-74-6584        TCGA-76-4926 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-4927        TCGA-76-4928        TCGA-76-4929        TCGA-76-4931 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-4932        TCGA-76-6192        TCGA-76-6193        TCGA-76-6282 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-6283        TCGA-76-6285        TCGA-76-6656        TCGA-76-6657 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-6660        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-81-5910 
"ST6GAL2 WILD-TYPE" 
D91V8, multiclass
[1] "Remove cluster labels:" "ST6GAL2 MUTATED"       
clus
  ST6GAL2 MUTATED ST6GAL2 WILD-TYPE 
                2               141 
       TCGA-02-0003        TCGA-02-2470        TCGA-02-2485        TCGA-06-0126 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-0128        TCGA-06-0129        TCGA-06-0130        TCGA-06-0154 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-0155        TCGA-06-0189        TCGA-06-0238        TCGA-06-0644 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0875        TCGA-06-0876        TCGA-06-0877 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-0878        TCGA-06-0879        TCGA-06-0882        TCGA-06-0939 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-1804        TCGA-06-1806        TCGA-06-2557        TCGA-06-2558 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-2559        TCGA-06-2562        TCGA-06-2563        TCGA-06-2564 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-2565        TCGA-06-2567        TCGA-06-5408        TCGA-06-5410 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5411        TCGA-06-5412        TCGA-06-5413        TCGA-06-5414 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5415        TCGA-06-5417        TCGA-06-5418        TCGA-06-5856 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-5858        TCGA-06-5859        TCGA-06-6388        TCGA-06-6389 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6390        TCGA-06-6391        TCGA-06-6693        TCGA-06-6694 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6695        TCGA-06-6697        TCGA-06-6698        TCGA-06-6699 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-06-6700        TCGA-06-6701        TCGA-08-0386        TCGA-12-0692 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3652        TCGA-12-3653 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-12-5295        TCGA-12-5301        TCGA-14-0813        TCGA-14-0862 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1823        TCGA-16-0846        TCGA-19-1390 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-1790        TCGA-19-2619        TCGA-19-2620        TCGA-19-2625 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4068        TCGA-19-5947        TCGA-19-5950 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5958        TCGA-19-5959        TCGA-19-5960 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-26-1442        TCGA-26-5132        TCGA-26-5133        TCGA-26-5134 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-26-6173        TCGA-26-6174        TCGA-27-1830        TCGA-27-1831 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-27-1832        TCGA-27-1833        TCGA-27-1834        TCGA-27-1836 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2528        TCGA-28-1747        TCGA-28-1753 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-28-2501        TCGA-28-5208        TCGA-28-5214        TCGA-32-1970 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1991        TCGA-32-4210 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-32-4211        TCGA-32-5222        TCGA-41-2573        TCGA-41-2575 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-41-3392        TCGA-41-3393        TCGA-41-3915        TCGA-41-4097 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-41-5651        TCGA-41-6646        TCGA-74-6573        TCGA-74-6575 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-74-6577        TCGA-74-6578        TCGA-74-6584        TCGA-76-4926 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-4927        TCGA-76-4928        TCGA-76-4929        TCGA-76-4931 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-4932        TCGA-76-6192        TCGA-76-6193        TCGA-76-6282 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-6283        TCGA-76-6285        TCGA-76-6656        TCGA-76-6657 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-76-6660        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" "ST6GAL2 WILD-TYPE" 
       TCGA-81-5910 
"ST6GAL2 WILD-TYPE" 
D91V9, multiclass
        clus
vv       ST6GAL2 MUTATED ST6GAL2 WILD-TYPE
  CLUS_1               3                41
  CLUS_2               1                61
  CLUS_3               0                35
D91V10, multiclass
        clus
vv       ST6GAL2 MUTATED ST6GAL2 WILD-TYPE
  CLUS_1               0                61
  CLUS_2               1                20
  CLUS_3               3                56

Clustering(92) Variable = CD3EAP MUTATION ANALYSIS
D92V1, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1               75
  CLUS_2              1               84
  CLUS_3              1               79
D92V2, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              2              101
  CLUS_2              0               59
  CLUS_3              1               78
D92V3, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1               56
  CLUS_2              1               71
  CLUS_3              0               30
  CLUS_4              1               43
D92V4, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              2               71
  CLUS_2              1               80
  CLUS_3              0               49
D92V5, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1              107
  CLUS_3              1               78
D92V6, multiclass
[1] "Remove cluster labels:" "CD3EAP MUTATED"        
clus
  CD3EAP MUTATED CD3EAP WILD-TYPE 
               1              107 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0740       TCGA-14-0781 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-14-0862       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-15-1444       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1442 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-28-2501       TCGA-28-2510       TCGA-28-5204       TCGA-28-5207 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5211       TCGA-28-5213 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-28-5214       TCGA-28-5215       TCGA-28-5216       TCGA-28-5218 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-28-5219       TCGA-28-5220       TCGA-28-6450       TCGA-32-1979 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-32-1980       TCGA-32-5222       TCGA-41-5651       TCGA-41-6646 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-4935       TCGA-76-6191       TCGA-76-6192       TCGA-76-6193 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-6280       TCGA-76-6282       TCGA-76-6283       TCGA-76-6285 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6660 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
D92V7, multiclass
[1] "Remove cluster labels:" "CD3EAP MUTATED"        
clus
  CD3EAP MUTATED CD3EAP WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0650 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-06-6388       TCGA-06-6389 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6390       TCGA-06-6391       TCGA-06-6693       TCGA-06-6694 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6695       TCGA-06-6697       TCGA-06-6698       TCGA-06-6699 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6700       TCGA-06-6701       TCGA-08-0386       TCGA-12-0692 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-12-1597       TCGA-12-3649       TCGA-12-3650       TCGA-12-3652 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5301       TCGA-14-0813 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-14-0862       TCGA-14-0871       TCGA-14-1823       TCGA-16-0846 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-1390       TCGA-19-1790       TCGA-19-2619       TCGA-19-2620 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2631       TCGA-19-4068       TCGA-19-5947 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-5950       TCGA-19-5951       TCGA-19-5952       TCGA-19-5953 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-5954       TCGA-19-5955       TCGA-19-5958       TCGA-19-5959 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-26-5134       TCGA-26-6173       TCGA-26-6174       TCGA-27-1830 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1833       TCGA-27-1834 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-27-1836       TCGA-27-2518       TCGA-27-2528       TCGA-28-1747 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2501       TCGA-28-5208       TCGA-28-5214 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-32-4210       TCGA-32-4211       TCGA-32-5222       TCGA-41-2573 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-41-2575       TCGA-41-3392       TCGA-41-3393       TCGA-41-3915 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-41-4097       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4929       TCGA-76-4931 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-81-5910 
"CD3EAP WILD-TYPE" 
D92V8, multiclass
[1] "Remove cluster labels:" "CD3EAP MUTATED"        
clus
  CD3EAP MUTATED CD3EAP WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0650 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-06-6388       TCGA-06-6389 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6390       TCGA-06-6391       TCGA-06-6693       TCGA-06-6694 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6695       TCGA-06-6697       TCGA-06-6698       TCGA-06-6699 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-06-6700       TCGA-06-6701       TCGA-08-0386       TCGA-12-0692 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-12-1597       TCGA-12-3649       TCGA-12-3650       TCGA-12-3652 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5301       TCGA-14-0813 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-14-0862       TCGA-14-0871       TCGA-14-1823       TCGA-16-0846 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-1390       TCGA-19-1790       TCGA-19-2619       TCGA-19-2620 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2631       TCGA-19-4068       TCGA-19-5947 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-5950       TCGA-19-5951       TCGA-19-5952       TCGA-19-5953 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-5954       TCGA-19-5955       TCGA-19-5958       TCGA-19-5959 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-26-5134       TCGA-26-6173       TCGA-26-6174       TCGA-27-1830 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1833       TCGA-27-1834 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-27-1836       TCGA-27-2518       TCGA-27-2528       TCGA-28-1747 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2501       TCGA-28-5208       TCGA-28-5214 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-32-4210       TCGA-32-4211       TCGA-32-5222       TCGA-41-2573 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-41-2575       TCGA-41-3392       TCGA-41-3393       TCGA-41-3915 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-41-4097       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4929       TCGA-76-4931 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" "CD3EAP WILD-TYPE" 
      TCGA-81-5910 
"CD3EAP WILD-TYPE" 
D92V9, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              0               44
  CLUS_2              2               60
  CLUS_3              1               34
D92V10, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              2               59
  CLUS_2              0               21
  CLUS_3              1               58

Clustering(93) Variable = F9 MUTATION ANALYSIS
D93V1, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          0           76
  CLUS_2          2           83
  CLUS_3          1           79
D93V2, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          1          102
  CLUS_2          1           58
  CLUS_3          1           78
D93V3, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          2           55
  CLUS_2          0           72
  CLUS_3          1           29
  CLUS_4          0           44
D93V4, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          1           72
  CLUS_2          0           81
  CLUS_3          2           47
D93V5, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          1           86
  CLUS_2          2          106
  CLUS_3          1           78
D93V6, multiclass
[1] "Remove cluster labels:" "F9 MUTATED"            
clus
  F9 MUTATED F9 WILD-TYPE 
           2          106 
  TCGA-06-0650   TCGA-06-1804   TCGA-06-1806   TCGA-06-5408   TCGA-06-5410 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5411   TCGA-06-5412   TCGA-06-5413   TCGA-06-5414   TCGA-06-5415 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5417   TCGA-06-5418   TCGA-06-5856   TCGA-06-5858   TCGA-06-5859 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-6388   TCGA-06-6389   TCGA-06-6390   TCGA-06-6391   TCGA-06-6693 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-6694   TCGA-06-6695   TCGA-06-6697   TCGA-06-6698   TCGA-06-6699 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-6700   TCGA-06-6701   TCGA-12-5295   TCGA-12-5299   TCGA-14-0740 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-14-0781   TCGA-14-0862   TCGA-14-1043   TCGA-14-1395   TCGA-14-1450 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-15-1444   TCGA-19-5947   TCGA-19-5950   TCGA-19-5951   TCGA-19-5952 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-5953   TCGA-19-5954   TCGA-19-5955   TCGA-19-5958   TCGA-19-5959 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-5960   TCGA-26-1442   TCGA-26-5132   TCGA-26-5133   TCGA-26-5134 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-5135   TCGA-26-5136   TCGA-26-5139   TCGA-26-6173   TCGA-26-6174 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-2501   TCGA-28-2510   TCGA-28-5204   TCGA-28-5207   TCGA-28-5208 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-5209   TCGA-28-5211   TCGA-28-5213   TCGA-28-5214   TCGA-28-5215 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-5216   TCGA-28-5218   TCGA-28-5219   TCGA-28-5220   TCGA-28-6450 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-1979   TCGA-32-1980   TCGA-32-5222   TCGA-41-5651   TCGA-41-6646 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-74-6573   TCGA-74-6575   TCGA-74-6577   TCGA-74-6578   TCGA-74-6584 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-4925   TCGA-76-4926   TCGA-76-4927   TCGA-76-4928   TCGA-76-4929 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-4931   TCGA-76-4932   TCGA-76-4934   TCGA-76-4935   TCGA-76-6191 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6192   TCGA-76-6193   TCGA-76-6280   TCGA-76-6282   TCGA-76-6283 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6285   TCGA-76-6286   TCGA-76-6656   TCGA-76-6657   TCGA-76-6660 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6661   TCGA-76-6662   TCGA-76-6663   TCGA-76-6664   TCGA-81-5910 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-81-5911 
"F9 WILD-TYPE" 
D93V7, multiclass
[1] "Remove cluster labels:" "F9 MUTATED"            
clus
  F9 MUTATED F9 WILD-TYPE 
           1          142 
  TCGA-02-0003   TCGA-02-2470   TCGA-02-2485   TCGA-06-0126   TCGA-06-0128 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0129   TCGA-06-0130   TCGA-06-0154   TCGA-06-0155   TCGA-06-0189 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0238   TCGA-06-0644   TCGA-06-0650   TCGA-06-0875   TCGA-06-0876 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0877   TCGA-06-0878   TCGA-06-0879   TCGA-06-0882   TCGA-06-0939 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-1804   TCGA-06-1806   TCGA-06-2557   TCGA-06-2558   TCGA-06-2559 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2562   TCGA-06-2563   TCGA-06-2564   TCGA-06-2565   TCGA-06-2567 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2570   TCGA-06-5408   TCGA-06-5410   TCGA-06-5411   TCGA-06-5412 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5413   TCGA-06-5414   TCGA-06-5415   TCGA-06-5417   TCGA-06-5418 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5856   TCGA-06-5858   TCGA-06-5859   TCGA-06-6388   TCGA-06-6389 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-6390   TCGA-06-6391   TCGA-06-6693   TCGA-06-6694   TCGA-06-6695 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-6697   TCGA-06-6698   TCGA-06-6699   TCGA-06-6700   TCGA-06-6701 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-08-0386   TCGA-12-0692   TCGA-12-1597   TCGA-12-3649   TCGA-12-3650 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-12-3652   TCGA-12-3653   TCGA-12-5295   TCGA-14-0813   TCGA-14-0862 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-14-0871   TCGA-14-1823   TCGA-16-0846   TCGA-19-1390   TCGA-19-1790 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-2619   TCGA-19-2620   TCGA-19-2625   TCGA-19-2631   TCGA-19-4068 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-5947   TCGA-19-5950   TCGA-19-5951   TCGA-19-5952   TCGA-19-5953 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-5954   TCGA-19-5955   TCGA-19-5958   TCGA-19-5959   TCGA-19-5960 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-1442   TCGA-26-5132   TCGA-26-5133   TCGA-26-5134   TCGA-26-6173 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-6174   TCGA-27-1830   TCGA-27-1831   TCGA-27-1832   TCGA-27-1833 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-27-1834   TCGA-27-1836   TCGA-27-2518   TCGA-27-2528   TCGA-28-1747 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-1753   TCGA-28-2501   TCGA-28-5208   TCGA-28-5214   TCGA-32-1970 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-1982   TCGA-32-1986   TCGA-32-1991   TCGA-32-4210   TCGA-32-4211 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-5222   TCGA-41-2573   TCGA-41-2575   TCGA-41-3392   TCGA-41-3393 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-41-3915   TCGA-41-4097   TCGA-41-5651   TCGA-41-6646   TCGA-74-6573 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-74-6575   TCGA-74-6577   TCGA-74-6578   TCGA-74-6584   TCGA-76-4926 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-4927   TCGA-76-4928   TCGA-76-4929   TCGA-76-4931   TCGA-76-4932 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6192   TCGA-76-6193   TCGA-76-6282   TCGA-76-6283   TCGA-76-6285 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6656   TCGA-76-6657   TCGA-76-6660   TCGA-76-6662   TCGA-76-6663 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6664   TCGA-81-5910 
"F9 WILD-TYPE" "F9 WILD-TYPE" 
D93V8, multiclass
[1] "Remove cluster labels:" "F9 MUTATED"            
clus
  F9 MUTATED F9 WILD-TYPE 
           1          142 
  TCGA-02-0003   TCGA-02-2470   TCGA-02-2485   TCGA-06-0126   TCGA-06-0128 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0129   TCGA-06-0130   TCGA-06-0154   TCGA-06-0155   TCGA-06-0189 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0238   TCGA-06-0644   TCGA-06-0650   TCGA-06-0875   TCGA-06-0876 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0877   TCGA-06-0878   TCGA-06-0879   TCGA-06-0882   TCGA-06-0939 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-1804   TCGA-06-1806   TCGA-06-2557   TCGA-06-2558   TCGA-06-2559 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2562   TCGA-06-2563   TCGA-06-2564   TCGA-06-2565   TCGA-06-2567 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2570   TCGA-06-5408   TCGA-06-5410   TCGA-06-5411   TCGA-06-5412 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5413   TCGA-06-5414   TCGA-06-5415   TCGA-06-5417   TCGA-06-5418 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5856   TCGA-06-5858   TCGA-06-5859   TCGA-06-6388   TCGA-06-6389 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-6390   TCGA-06-6391   TCGA-06-6693   TCGA-06-6694   TCGA-06-6695 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-6697   TCGA-06-6698   TCGA-06-6699   TCGA-06-6700   TCGA-06-6701 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-08-0386   TCGA-12-0692   TCGA-12-1597   TCGA-12-3649   TCGA-12-3650 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-12-3652   TCGA-12-3653   TCGA-12-5295   TCGA-14-0813   TCGA-14-0862 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-14-0871   TCGA-14-1823   TCGA-16-0846   TCGA-19-1390   TCGA-19-1790 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-2619   TCGA-19-2620   TCGA-19-2625   TCGA-19-2631   TCGA-19-4068 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-5947   TCGA-19-5950   TCGA-19-5951   TCGA-19-5952   TCGA-19-5953 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-5954   TCGA-19-5955   TCGA-19-5958   TCGA-19-5959   TCGA-19-5960 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-1442   TCGA-26-5132   TCGA-26-5133   TCGA-26-5134   TCGA-26-6173 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-6174   TCGA-27-1830   TCGA-27-1831   TCGA-27-1832   TCGA-27-1833 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-27-1834   TCGA-27-1836   TCGA-27-2518   TCGA-27-2528   TCGA-28-1747 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-1753   TCGA-28-2501   TCGA-28-5208   TCGA-28-5214   TCGA-32-1970 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-1982   TCGA-32-1986   TCGA-32-1991   TCGA-32-4210   TCGA-32-4211 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-5222   TCGA-41-2573   TCGA-41-2575   TCGA-41-3392   TCGA-41-3393 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-41-3915   TCGA-41-4097   TCGA-41-5651   TCGA-41-6646   TCGA-74-6573 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-74-6575   TCGA-74-6577   TCGA-74-6578   TCGA-74-6584   TCGA-76-4926 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-4927   TCGA-76-4928   TCGA-76-4929   TCGA-76-4931   TCGA-76-4932 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6192   TCGA-76-6193   TCGA-76-6282   TCGA-76-6283   TCGA-76-6285 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6656   TCGA-76-6657   TCGA-76-6660   TCGA-76-6662   TCGA-76-6663 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-6664   TCGA-81-5910 
"F9 WILD-TYPE" "F9 WILD-TYPE" 
D93V9, multiclass
[1] "Remove cluster labels:" "F9 MUTATED"            
clus
  F9 MUTATED F9 WILD-TYPE 
           1          140 
  TCGA-02-0047   TCGA-02-2483   TCGA-02-2485   TCGA-02-2486   TCGA-06-0129 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0130   TCGA-06-0132   TCGA-06-0141   TCGA-06-0157   TCGA-06-0158 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0168   TCGA-06-0174   TCGA-06-0178   TCGA-06-0184   TCGA-06-0219 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0238   TCGA-06-0644   TCGA-06-0645   TCGA-06-0646   TCGA-06-0649 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0686   TCGA-06-0743   TCGA-06-0744   TCGA-06-0745   TCGA-06-0747 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0749   TCGA-06-0750   TCGA-06-0878   TCGA-06-0882   TCGA-06-1804 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2557   TCGA-06-2558   TCGA-06-2559   TCGA-06-2561   TCGA-06-2562 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2563   TCGA-06-2564   TCGA-06-2565   TCGA-06-2567   TCGA-06-2569 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2570   TCGA-06-5408   TCGA-06-5410   TCGA-06-5411   TCGA-06-5412 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5413   TCGA-06-5414   TCGA-06-5415   TCGA-06-5417   TCGA-06-5418 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5856   TCGA-06-5858   TCGA-06-5859   TCGA-08-0386   TCGA-12-0616 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-12-0618   TCGA-12-0619   TCGA-12-0821   TCGA-12-1597   TCGA-12-3650 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-12-3652   TCGA-12-3653   TCGA-12-5295   TCGA-12-5299   TCGA-14-0781 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-14-0787   TCGA-14-0789   TCGA-14-0790   TCGA-14-0817   TCGA-14-1823 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-14-1825   TCGA-14-1829   TCGA-14-2554   TCGA-15-0742   TCGA-15-1444 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-16-0846   TCGA-16-1045   TCGA-19-1390   TCGA-19-2619   TCGA-19-2620 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-2624   TCGA-19-2625   TCGA-19-2629   TCGA-19-5960   TCGA-26-1442 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-5132   TCGA-26-5133   TCGA-26-5134   TCGA-26-5135   TCGA-26-5136 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-5139   TCGA-27-1830   TCGA-27-1831   TCGA-27-1832   TCGA-27-1834 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-27-1835   TCGA-27-1837   TCGA-27-2519   TCGA-27-2521   TCGA-27-2523 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-27-2524   TCGA-27-2526   TCGA-27-2528   TCGA-28-1747   TCGA-28-1753 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-2499   TCGA-28-2509   TCGA-28-2510   TCGA-28-2513   TCGA-28-2514 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-5204   TCGA-28-5207   TCGA-28-5208   TCGA-28-5209   TCGA-28-5213 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-5215   TCGA-28-5216   TCGA-28-5218   TCGA-28-5220   TCGA-32-1970 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-1980   TCGA-32-1982   TCGA-32-2615   TCGA-32-2632   TCGA-32-2634 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-2638   TCGA-32-4213   TCGA-32-5222   TCGA-41-2571   TCGA-41-2572 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-41-3915   TCGA-41-4097   TCGA-41-5651   TCGA-76-4925   TCGA-76-4926 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-4927   TCGA-76-4928   TCGA-76-4929   TCGA-76-4931   TCGA-76-4932 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
D93V10, multiclass
[1] "Remove cluster labels:" "F9 MUTATED"            
clus
  F9 MUTATED F9 WILD-TYPE 
           1          140 
  TCGA-02-0047   TCGA-02-2483   TCGA-02-2485   TCGA-02-2486   TCGA-06-0129 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0130   TCGA-06-0132   TCGA-06-0141   TCGA-06-0157   TCGA-06-0158 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0168   TCGA-06-0174   TCGA-06-0178   TCGA-06-0184   TCGA-06-0219 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0238   TCGA-06-0644   TCGA-06-0645   TCGA-06-0646   TCGA-06-0649 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0686   TCGA-06-0743   TCGA-06-0744   TCGA-06-0745   TCGA-06-0747 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-0749   TCGA-06-0750   TCGA-06-0878   TCGA-06-0882   TCGA-06-1804 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2557   TCGA-06-2558   TCGA-06-2559   TCGA-06-2561   TCGA-06-2562 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2563   TCGA-06-2564   TCGA-06-2565   TCGA-06-2567   TCGA-06-2569 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-2570   TCGA-06-5408   TCGA-06-5410   TCGA-06-5411   TCGA-06-5412 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5413   TCGA-06-5414   TCGA-06-5415   TCGA-06-5417   TCGA-06-5418 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-06-5856   TCGA-06-5858   TCGA-06-5859   TCGA-08-0386   TCGA-12-0616 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-12-0618   TCGA-12-0619   TCGA-12-0821   TCGA-12-1597   TCGA-12-3650 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-12-3652   TCGA-12-3653   TCGA-12-5295   TCGA-12-5299   TCGA-14-0781 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-14-0787   TCGA-14-0789   TCGA-14-0790   TCGA-14-0817   TCGA-14-1823 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-14-1825   TCGA-14-1829   TCGA-14-2554   TCGA-15-0742   TCGA-15-1444 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-16-0846   TCGA-16-1045   TCGA-19-1390   TCGA-19-2619   TCGA-19-2620 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-19-2624   TCGA-19-2625   TCGA-19-2629   TCGA-19-5960   TCGA-26-1442 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-5132   TCGA-26-5133   TCGA-26-5134   TCGA-26-5135   TCGA-26-5136 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-26-5139   TCGA-27-1830   TCGA-27-1831   TCGA-27-1832   TCGA-27-1834 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-27-1835   TCGA-27-1837   TCGA-27-2519   TCGA-27-2521   TCGA-27-2523 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-27-2524   TCGA-27-2526   TCGA-27-2528   TCGA-28-1747   TCGA-28-1753 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-2499   TCGA-28-2509   TCGA-28-2510   TCGA-28-2513   TCGA-28-2514 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-5204   TCGA-28-5207   TCGA-28-5208   TCGA-28-5209   TCGA-28-5213 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-28-5215   TCGA-28-5216   TCGA-28-5218   TCGA-28-5220   TCGA-32-1970 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-1980   TCGA-32-1982   TCGA-32-2615   TCGA-32-2632   TCGA-32-2634 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-32-2638   TCGA-32-4213   TCGA-32-5222   TCGA-41-2571   TCGA-41-2572 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-41-3915   TCGA-41-4097   TCGA-41-5651   TCGA-76-4925   TCGA-76-4926 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-76-4927   TCGA-76-4928   TCGA-76-4929   TCGA-76-4931   TCGA-76-4932 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 

Clustering(94) Variable = DPP10 MUTATION ANALYSIS
D94V1, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             3              82
  CLUS_3             3              77
D94V2, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             4              55
  CLUS_3             2              77
D94V3, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             4              68
  CLUS_3             1              29
  CLUS_4             1              43
D94V4, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             3              78
  CLUS_3             2              47
D94V5, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3             105
  CLUS_3             1              78
D94V6, multiclass
[1] "Remove cluster labels:" "DPP10 MUTATED"         
clus
  DPP10 MUTATED DPP10 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5413      TCGA-06-5414 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-06-5415      TCGA-06-5417      TCGA-06-5418      TCGA-06-5856 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6391      TCGA-06-6693      TCGA-06-6694 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-06-6695      TCGA-06-6697      TCGA-06-6698      TCGA-06-6699 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-06-6700      TCGA-06-6701      TCGA-12-5295      TCGA-12-5299 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0862 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-14-1043      TCGA-14-1395      TCGA-14-1450      TCGA-15-1444 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5135      TCGA-26-5136 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-28-2501 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-28-2510      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1979      TCGA-32-1980 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
D94V7, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             2              36
  CLUS_3             0              31
  CLUS_4             2              31
D94V8, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             2              26
  CLUS_3             3              65
D94V9, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             2              60
  CLUS_3             1              34
D94V10, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             0              21
  CLUS_3             1              58

Clustering(95) Variable = TCN1 MUTATION ANALYSIS
D95V1, multiclass
        clus
vv       TCN1 MUTATED TCN1 WILD-TYPE
  CLUS_1            2             74
  CLUS_2            1             84
  CLUS_3            1             79
D95V2, multiclass
        clus
vv       TCN1 MUTATED TCN1 WILD-TYPE
  CLUS_1            3            100
  CLUS_2            0             59
  CLUS_3            1             78
D95V3, multiclass
        clus
vv       TCN1 MUTATED TCN1 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            1             71
  CLUS_3            0             30
  CLUS_4            0             44
D95V4, multiclass
        clus
vv       TCN1 MUTATED TCN1 WILD-TYPE
  CLUS_1            0             73
  CLUS_2            3             78
  CLUS_3            0             49
D95V5, multiclass
        clus
vv       TCN1 MUTATED TCN1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3            105
  CLUS_3            0             79
D95V6, multiclass
        clus
vv       TCN1 MUTATED TCN1 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            2             18
  CLUS_3            1             24
  CLUS_4            0             26
D95V7, multiclass
[1] "Remove cluster labels:" "TCN1 MUTATED"          
clus
  TCN1 MUTATED TCN1 WILD-TYPE 
             1            142 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2570     TCGA-06-5408 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-12-0692     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5301 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0862     TCGA-14-0871     TCGA-14-1823 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-16-0846     TCGA-19-1390     TCGA-19-1790     TCGA-19-2619 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-19-2620     TCGA-19-2625     TCGA-19-2631     TCGA-19-4068 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-6173     TCGA-26-6174 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1836     TCGA-27-2518     TCGA-27-2528 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-28-1747     TCGA-28-1753     TCGA-28-2501     TCGA-28-5214 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-5222     TCGA-41-2573 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-41-4097     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-6192     TCGA-76-6193 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6656 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-6657     TCGA-76-6660     TCGA-76-6662     TCGA-76-6663 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-6664     TCGA-81-5910 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
D95V8, multiclass
[1] "Remove cluster labels:" "TCN1 MUTATED"          
clus
  TCN1 MUTATED TCN1 WILD-TYPE 
             1            142 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0154 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0189     TCGA-06-0238     TCGA-06-0644 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0875     TCGA-06-0876     TCGA-06-0877 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0879     TCGA-06-0882     TCGA-06-0939 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2570     TCGA-06-5408 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-12-0692     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5301 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0862     TCGA-14-0871     TCGA-14-1823 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-16-0846     TCGA-19-1390     TCGA-19-1790     TCGA-19-2619 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-19-2620     TCGA-19-2625     TCGA-19-2631     TCGA-19-4068 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-6173     TCGA-26-6174 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1836     TCGA-27-2518     TCGA-27-2528 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-28-1747     TCGA-28-1753     TCGA-28-2501     TCGA-28-5214 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-5222     TCGA-41-2573 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-41-4097     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-6192     TCGA-76-6193 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6656 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-6657     TCGA-76-6660     TCGA-76-6662     TCGA-76-6663 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
    TCGA-76-6664     TCGA-81-5910 
"TCN1 WILD-TYPE" "TCN1 WILD-TYPE" 
D95V9, multiclass
        clus
vv       TCN1 MUTATED TCN1 WILD-TYPE
  CLUS_1            0             44
  CLUS_2            3             59
  CLUS_3            0             35
D95V10, multiclass
        clus
vv       TCN1 MUTATED TCN1 WILD-TYPE
  CLUS_1            2             59
  CLUS_2            1             20
  CLUS_3            0             59

Clustering(96) Variable = TRPV6 MUTATION ANALYSIS
D96V1, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             1              75
  CLUS_2             3              82
  CLUS_3             2              78
D96V2, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             1              58
  CLUS_3             3              76
D96V3, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             3              69
  CLUS_3             2              28
  CLUS_4             1              43
D96V4, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              79
  CLUS_3             3              46
D96V5, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2             106
  CLUS_3             1              78
D96V6, multiclass
[1] "Remove cluster labels:" "TRPV6 MUTATED"         
clus
  TRPV6 MUTATED TRPV6 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-2510      TCGA-28-5204      TCGA-28-5207 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5211      TCGA-28-5213 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-28-5214      TCGA-28-5215      TCGA-28-5216      TCGA-28-5218 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-28-5219      TCGA-28-5220      TCGA-28-6450      TCGA-32-1979 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-5222      TCGA-41-5651      TCGA-41-6646 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6283 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6657      TCGA-76-6660 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" "TRPV6 WILD-TYPE" 
D96V7, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             0              41
  CLUS_2             1              37
  CLUS_3             2              29
  CLUS_4             0              33
D96V8, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              28
  CLUS_3             1              67
D96V9, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             1              61
  CLUS_3             0              35
D96V10, multiclass
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             1              20
  CLUS_3             3              56

Clustering(97) Variable = PAN3 MUTATION ANALYSIS
D97V1, multiclass
        clus
vv       PAN3 MUTATED PAN3 WILD-TYPE
  CLUS_1            2             74
  CLUS_2            2             83
  CLUS_3            1             79
D97V2, multiclass
        clus
vv       PAN3 MUTATED PAN3 WILD-TYPE
  CLUS_1            3            100
  CLUS_2            0             59
  CLUS_3            2             77
D97V3, multiclass
        clus
vv       PAN3 MUTATED PAN3 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            3             69
  CLUS_3            0             30
  CLUS_4            0             44
D97V4, multiclass
        clus
vv       PAN3 MUTATED PAN3 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             80
  CLUS_3            2             47
D97V5, multiclass
        clus
vv       PAN3 MUTATED PAN3 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3            105
  CLUS_3            2             77
D97V6, multiclass
[1] "Remove cluster labels:" "PAN3 MUTATED"          
clus
  PAN3 MUTATED PAN3 WILD-TYPE 
             1            107 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5408 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-12-5295 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-5299     TCGA-12-5301     TCGA-14-0740     TCGA-14-0781 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-14-0862     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-15-1444     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1442 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-2501     TCGA-28-2510     TCGA-28-5204     TCGA-28-5207 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5209     TCGA-28-5211     TCGA-28-5213 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-5214     TCGA-28-5215     TCGA-28-5216     TCGA-28-5218 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-5219     TCGA-28-5220     TCGA-28-6450     TCGA-32-1979 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-5222     TCGA-41-5651     TCGA-41-6646 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-6280     TCGA-76-6282     TCGA-76-6283     TCGA-76-6285 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6660 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
D97V7, multiclass
[1] "Remove cluster labels:" "PAN3 MUTATED"          
clus
  PAN3 MUTATED PAN3 WILD-TYPE 
             2            141 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0154     TCGA-06-0155 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0189     TCGA-06-0238     TCGA-06-0644     TCGA-06-0650 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-1806     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2570     TCGA-06-5408     TCGA-06-5410 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-08-0386     TCGA-12-0692 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5301     TCGA-14-0813 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-14-0862     TCGA-14-0871     TCGA-14-1823     TCGA-16-0846 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-1790     TCGA-19-2619     TCGA-19-2620 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2631     TCGA-19-4068     TCGA-19-5947 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-5950     TCGA-19-5951     TCGA-19-5952     TCGA-19-5953 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-6173     TCGA-26-6174     TCGA-27-1830 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-1836     TCGA-27-2518     TCGA-27-2528     TCGA-28-1747 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2501     TCGA-28-5208     TCGA-28-5214 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-5222     TCGA-41-2573 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-41-4097     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4926 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-6192     TCGA-76-6193     TCGA-76-6282 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-6283     TCGA-76-6285     TCGA-76-6656     TCGA-76-6657 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-6660     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-81-5910 
"PAN3 WILD-TYPE" 
D97V8, multiclass
[1] "Remove cluster labels:" "PAN3 MUTATED"          
clus
  PAN3 MUTATED PAN3 WILD-TYPE 
             2            141 
    TCGA-02-0003     TCGA-02-2470     TCGA-02-2485     TCGA-06-0126 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0154     TCGA-06-0155 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0189     TCGA-06-0238     TCGA-06-0644     TCGA-06-0650 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-1806     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2570     TCGA-06-5408     TCGA-06-5410 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-08-0386     TCGA-12-0692 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5301     TCGA-14-0813 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-14-0862     TCGA-14-0871     TCGA-14-1823     TCGA-16-0846 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-1790     TCGA-19-2619     TCGA-19-2620 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2631     TCGA-19-4068     TCGA-19-5947 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-5950     TCGA-19-5951     TCGA-19-5952     TCGA-19-5953 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-5954     TCGA-19-5955     TCGA-19-5958     TCGA-19-5959 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-6173     TCGA-26-6174     TCGA-27-1830 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-1831     TCGA-27-1832     TCGA-27-1833     TCGA-27-1834 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-1836     TCGA-27-2518     TCGA-27-2528     TCGA-28-1747 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-1753     TCGA-28-2501     TCGA-28-5208     TCGA-28-5214 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-1970     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-4210     TCGA-32-4211     TCGA-32-5222     TCGA-41-2573 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-41-2575     TCGA-41-3392     TCGA-41-3393     TCGA-41-3915 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-41-4097     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4926 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-6192     TCGA-76-6193     TCGA-76-6282 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-6283     TCGA-76-6285     TCGA-76-6656     TCGA-76-6657 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-6660     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-81-5910 
"PAN3 WILD-TYPE" 
D97V9, multiclass
[1] "Remove cluster labels:" "PAN3 MUTATED"          
clus
  PAN3 MUTATED PAN3 WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0132     TCGA-06-0141 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0157     TCGA-06-0158     TCGA-06-0168     TCGA-06-0174 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0178     TCGA-06-0184     TCGA-06-0219     TCGA-06-0238 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0644     TCGA-06-0645     TCGA-06-0646     TCGA-06-0649 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0878 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0882     TCGA-06-1804     TCGA-06-2557     TCGA-06-2558 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5859     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0821     TCGA-12-1597     TCGA-12-3650 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0787     TCGA-14-0790     TCGA-14-0817 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-15-0742     TCGA-15-1444     TCGA-16-0846     TCGA-16-1045 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-2619     TCGA-19-2620     TCGA-19-2624 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-5960     TCGA-26-1442 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
D97V10, multiclass
[1] "Remove cluster labels:" "PAN3 MUTATED"          
clus
  PAN3 MUTATED PAN3 WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0129     TCGA-06-0130     TCGA-06-0132     TCGA-06-0141 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0157     TCGA-06-0158     TCGA-06-0168     TCGA-06-0174 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0178     TCGA-06-0184     TCGA-06-0219     TCGA-06-0238 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0644     TCGA-06-0645     TCGA-06-0646     TCGA-06-0649 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0878 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-0882     TCGA-06-1804     TCGA-06-2557     TCGA-06-2558 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-06-5859     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0821     TCGA-12-1597     TCGA-12-3650 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0787     TCGA-14-0790     TCGA-14-0817 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-15-0742     TCGA-15-1444     TCGA-16-0846     TCGA-16-1045 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-2619     TCGA-19-2620     TCGA-19-2624 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-5960     TCGA-26-1442 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PAN3 WILD-TYPE" "PAN3 WILD-TYPE" "PAN3 WILD-TYPE" 

Clustering(98) Variable = CDKN2C MUTATION ANALYSIS
D98V1, multiclass
        clus
vv       CDKN2C MUTATED CDKN2C WILD-TYPE
  CLUS_1              1               75
  CLUS_2              2               83
  CLUS_3              0               80
D98V2, multiclass
        clus
vv       CDKN2C MUTATED CDKN2C WILD-TYPE
  CLUS_1              2              101
  CLUS_2              0               59
  CLUS_3              1               78
D98V3, multiclass
        clus
vv       CDKN2C MUTATED CDKN2C WILD-TYPE
  CLUS_1              2               55
  CLUS_2              1               71
  CLUS_3              0               30
  CLUS_4              0               44
D98V4, multiclass
        clus
vv       CDKN2C MUTATED CDKN2C WILD-TYPE
  CLUS_1              2               71
  CLUS_2              1               80
  CLUS_3              0               49
D98V5, multiclass
        clus
vv       CDKN2C MUTATED CDKN2C WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2              106
  CLUS_3              0               79
D98V6, multiclass
D98V7, multiclass
[1] "Remove cluster labels:" "CDKN2C MUTATED"        
clus
  CDKN2C MUTATED CDKN2C WILD-TYPE 
               1              142 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0882       TCGA-06-0939 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2570       TCGA-06-5408 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-12-0692       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5301 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0862       TCGA-14-0871       TCGA-14-1823 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-16-0846       TCGA-19-1390       TCGA-19-1790       TCGA-19-2619 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2625       TCGA-19-2631       TCGA-19-4068 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-6173       TCGA-26-6174 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1836       TCGA-27-2518       TCGA-27-2528 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-28-1747       TCGA-28-2501       TCGA-28-5208       TCGA-28-5214 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-32-4210       TCGA-32-4211       TCGA-32-5222       TCGA-41-2573 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-41-2575       TCGA-41-3392       TCGA-41-3393       TCGA-41-3915 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-41-4097       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4928       TCGA-76-4929 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-4931       TCGA-76-4932       TCGA-76-6192       TCGA-76-6193 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6283       TCGA-76-6285       TCGA-76-6656 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-6657       TCGA-76-6660       TCGA-76-6662       TCGA-76-6663 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-6664       TCGA-81-5910 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
D98V8, multiclass
[1] "Remove cluster labels:" "CDKN2C MUTATED"        
clus
  CDKN2C MUTATED CDKN2C WILD-TYPE 
               1              142 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0882       TCGA-06-0939 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2570       TCGA-06-5408 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-12-0692       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5301 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0862       TCGA-14-0871       TCGA-14-1823 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-16-0846       TCGA-19-1390       TCGA-19-1790       TCGA-19-2619 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2625       TCGA-19-2631       TCGA-19-4068 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-6173       TCGA-26-6174 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1836       TCGA-27-2518       TCGA-27-2528 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-28-1747       TCGA-28-2501       TCGA-28-5208       TCGA-28-5214 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-32-4210       TCGA-32-4211       TCGA-32-5222       TCGA-41-2573 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-41-2575       TCGA-41-3392       TCGA-41-3393       TCGA-41-3915 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-41-4097       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4928       TCGA-76-4929 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-4931       TCGA-76-4932       TCGA-76-6192       TCGA-76-6193 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6283       TCGA-76-6285       TCGA-76-6656 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-6657       TCGA-76-6660       TCGA-76-6662       TCGA-76-6663 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
      TCGA-76-6664       TCGA-81-5910 
"CDKN2C WILD-TYPE" "CDKN2C WILD-TYPE" 
D98V9, multiclass
        clus
vv       CDKN2C MUTATED CDKN2C WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1               61
  CLUS_3              0               35
D98V10, multiclass
        clus
vv       CDKN2C MUTATED CDKN2C WILD-TYPE
  CLUS_1              3               58
  CLUS_2              0               21
  CLUS_3              0               59

Clustering(99) Variable = AZGP1 MUTATION ANALYSIS
D99V1, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             2              83
  CLUS_3             1              79
D99V2, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             3             100
  CLUS_2             0              59
  CLUS_3             2              77
D99V3, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             0              72
  CLUS_3             2              28
  CLUS_4             1              43
D99V4, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              81
  CLUS_3             2              47
D99V5, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2             106
  CLUS_3             1              78
D99V6, multiclass
[1] "Remove cluster labels:" "AZGP1 MUTATED"         
clus
  AZGP1 MUTATED AZGP1 WILD-TYPE 
              1             107 
     TCGA-06-0650      TCGA-06-1804      TCGA-06-1806      TCGA-06-5408 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-12-5295 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-12-5299      TCGA-12-5301      TCGA-14-0740      TCGA-14-0781 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-14-0862      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-15-1444      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1442 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-2501      TCGA-28-2510      TCGA-28-5204      TCGA-28-5207 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5209      TCGA-28-5211      TCGA-28-5213 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-5214      TCGA-28-5215      TCGA-28-5216      TCGA-28-5218 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-5219      TCGA-28-5220      TCGA-28-6450      TCGA-32-1980 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-32-5222      TCGA-41-5651      TCGA-41-6646      TCGA-74-6573 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6283      TCGA-76-6285 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6660 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
D99V7, multiclass
D99V8, multiclass
D99V9, multiclass
[1] "Remove cluster labels:" "AZGP1 MUTATED"         
clus
  AZGP1 MUTATED AZGP1 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0878 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0882      TCGA-06-1804      TCGA-06-2557      TCGA-06-2558 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5859      TCGA-08-0386      TCGA-12-0616      TCGA-12-0618 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0821      TCGA-12-1597      TCGA-12-3650 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0790      TCGA-14-0817 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
D99V10, multiclass
[1] "Remove cluster labels:" "AZGP1 MUTATED"         
clus
  AZGP1 MUTATED AZGP1 WILD-TYPE 
              2             139 
     TCGA-02-0047      TCGA-02-0055      TCGA-02-2483      TCGA-02-2485 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-02-2486      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0141      TCGA-06-0157      TCGA-06-0158      TCGA-06-0168 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0219 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0644      TCGA-06-0645      TCGA-06-0646 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0649      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0878 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-0882      TCGA-06-1804      TCGA-06-2557      TCGA-06-2558 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-06-5859      TCGA-08-0386      TCGA-12-0616      TCGA-12-0618 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0821      TCGA-12-1597      TCGA-12-3650 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0787      TCGA-14-0790      TCGA-14-0817 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-15-0742      TCGA-15-1444      TCGA-16-0846      TCGA-16-1045 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-19-1390      TCGA-19-2619      TCGA-19-2620      TCGA-19-2624 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-5960      TCGA-26-1442 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-27-1830      TCGA-27-1831 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-27-1832      TCGA-27-1834      TCGA-27-1835      TCGA-27-1837 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-27-2519      TCGA-27-2521      TCGA-27-2523      TCGA-27-2524 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-27-2526      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2509      TCGA-28-2510      TCGA-28-2513 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5213      TCGA-28-5215      TCGA-28-5216 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-28-5218      TCGA-28-5220      TCGA-32-1970      TCGA-32-1980 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-2615      TCGA-32-2632      TCGA-32-2634 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-32-2638      TCGA-32-4213      TCGA-32-5222      TCGA-41-2571 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" "AZGP1 WILD-TYPE" 

Clustering(100) Variable = DRD5 MUTATION ANALYSIS
D100V1, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            2             74
  CLUS_2            2             83
  CLUS_3            3             77
D100V2, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            4             99
  CLUS_2            2             57
  CLUS_3            1             78
D100V3, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            3             54
  CLUS_2            1             71
  CLUS_3            1             29
  CLUS_4            2             42
D100V4, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            4             69
  CLUS_2            1             80
  CLUS_3            2             47
D100V5, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2            106
  CLUS_3            1             78
D100V6, multiclass
[1] "Remove cluster labels:" "DRD5 MUTATED"          
clus
  DRD5 MUTATED DRD5 WILD-TYPE 
             1            107 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5408 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-12-5299 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1979     TCGA-32-1980 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-32-5222     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-76-6280     TCGA-76-6282     TCGA-76-6283     TCGA-76-6285 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6660 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"DRD5 WILD-TYPE" "DRD5 WILD-TYPE" "DRD5 WILD-TYPE" 
D100V7, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            0             41
  CLUS_2            1             37
  CLUS_3            2             29
  CLUS_4            1             32
D100V8, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             27
  CLUS_3            1             67
D100V9, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            2             60
  CLUS_3            0             35
D100V10, multiclass
        clus
vv       DRD5 MUTATED DRD5 WILD-TYPE
  CLUS_1            2             59
  CLUS_2            0             21
  CLUS_3            1             58

Clustering(101) Variable = FGA MUTATION ANALYSIS
D101V1, multiclass
        clus
vv       FGA MUTATED FGA WILD-TYPE
  CLUS_1           3            73
  CLUS_2           2            83
  CLUS_3           0            80
D101V2, multiclass
        clus
vv       FGA MUTATED FGA WILD-TYPE
  CLUS_1           3           100
  CLUS_2           0            59
  CLUS_3           2            77
D101V3, multiclass
        clus
vv       FGA MUTATED FGA WILD-TYPE
  CLUS_1           1            56
  CLUS_2           0            72
  CLUS_3           2            28
  CLUS_4           2            42
D101V4, multiclass
        clus
vv       FGA MUTATED FGA WILD-TYPE
  CLUS_1           4            69
  CLUS_2           0            81
  CLUS_3           1            48
D101V5, multiclass
        clus
vv       FGA MUTATED FGA WILD-TYPE
  CLUS_1           2            85
  CLUS_2           2           106
  CLUS_3           2            77
D101V6, multiclass
[1] "Remove cluster labels:" "FGA MUTATED"           
clus
  FGA MUTATED FGA WILD-TYPE 
            2           106 
   TCGA-06-0650    TCGA-06-1804    TCGA-06-1806    TCGA-06-5408    TCGA-06-5410 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-14-0740    TCGA-14-0781    TCGA-14-0862    TCGA-14-1043    TCGA-14-1395 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-14-1450    TCGA-15-1444    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-5959    TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-28-2501    TCGA-28-2510    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-28-5209    TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-32-1979    TCGA-32-1980    TCGA-32-5222    TCGA-41-5651    TCGA-41-6646 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6283 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-6285    TCGA-76-6286    TCGA-76-6656    TCGA-76-6660    TCGA-76-6661 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-6662    TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-87-5896 
"FGA WILD-TYPE" 
D101V7, multiclass
[1] "Remove cluster labels:" "FGA MUTATED"           
clus
  FGA MUTATED FGA WILD-TYPE 
            2           141 
   TCGA-02-0003    TCGA-02-2470    TCGA-02-2485    TCGA-06-0126    TCGA-06-0128 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0154    TCGA-06-0155    TCGA-06-0189 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-0238    TCGA-06-0644    TCGA-06-0650    TCGA-06-0875    TCGA-06-0876 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0882    TCGA-06-0939 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-1804    TCGA-06-1806    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-6390    TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-6697    TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-08-0386    TCGA-12-0692    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5301    TCGA-14-0813 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-14-0862    TCGA-14-0871    TCGA-14-1823    TCGA-16-0846    TCGA-19-1390 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2625    TCGA-19-2631 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-6173 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1836    TCGA-27-2518    TCGA-27-2528    TCGA-28-1747 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2501    TCGA-28-5208    TCGA-28-5214    TCGA-32-1970 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-4210    TCGA-32-4211 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-32-5222    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4926 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6282    TCGA-76-6283    TCGA-76-6285 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-6656    TCGA-76-6660    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-81-5910 
"FGA WILD-TYPE" 
D101V8, multiclass
[1] "Remove cluster labels:" "FGA MUTATED"           
clus
  FGA MUTATED FGA WILD-TYPE 
            2           141 
   TCGA-02-0003    TCGA-02-2470    TCGA-02-2485    TCGA-06-0126    TCGA-06-0128 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0154    TCGA-06-0155    TCGA-06-0189 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-0238    TCGA-06-0644    TCGA-06-0650    TCGA-06-0875    TCGA-06-0876 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0882    TCGA-06-0939 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-1804    TCGA-06-1806    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-6390    TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-06-6697    TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-08-0386    TCGA-12-0692    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5301    TCGA-14-0813 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-14-0862    TCGA-14-0871    TCGA-14-1823    TCGA-16-0846    TCGA-19-1390 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2625    TCGA-19-2631 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-6173 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1836    TCGA-27-2518    TCGA-27-2528    TCGA-28-1747 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2501    TCGA-28-5208    TCGA-28-5214    TCGA-32-1970 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-4210    TCGA-32-4211 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-32-5222    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4926 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6282    TCGA-76-6283    TCGA-76-6285 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-76-6656    TCGA-76-6660    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-81-5910 
"FGA WILD-TYPE" 
D101V9, multiclass
        clus
vv       FGA MUTATED FGA WILD-TYPE
  CLUS_1           2            42
  CLUS_2           1            61
  CLUS_3           0            35
D101V10, multiclass
        clus
vv       FGA MUTATED FGA WILD-TYPE
  CLUS_1           1            60
  CLUS_2           0            21
  CLUS_3           2            57

Clustering(102) Variable = FGG MUTATION ANALYSIS
D102V1, multiclass
        clus
vv       FGG MUTATED FGG WILD-TYPE
  CLUS_1           0            76
  CLUS_2           1            84
  CLUS_3           3            77
D102V2, multiclass
        clus
vv       FGG MUTATED FGG WILD-TYPE
  CLUS_1           2           101
  CLUS_2           2            57
  CLUS_3           0            79
D102V3, multiclass
[1] "Remove cluster labels:" "FGG MUTATED"           
clus
  FGG MUTATED FGG WILD-TYPE 
            2           201 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0122    TCGA-06-0124 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130    TCGA-06-0137 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0139    TCGA-06-0140    TCGA-06-0141    TCGA-06-0142    TCGA-06-0145 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0151    TCGA-06-0152    TCGA-06-0154    TCGA-06-0155    TCGA-06-0157 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0166    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0174    TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0189    TCGA-06-0192    TCGA-06-0195    TCGA-06-0213    TCGA-06-0214 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0939    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-5418    TCGA-08-0386    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-0688    TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-5301    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-14-0813    TCGA-14-0817    TCGA-14-0871    TCGA-14-1456    TCGA-14-1823 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-15-0742    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045    TCGA-16-1048 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-4068    TCGA-26-1439 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-2502    TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213    TCGA-28-5214 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219    TCGA-28-5220 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-1970    TCGA-32-1977    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-2491    TCGA-32-2494    TCGA-32-2495    TCGA-32-2498    TCGA-32-2615 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-2632    TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-4210    TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-41-2571    TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-76-4925    TCGA-76-4926 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4931    TCGA-76-4932    TCGA-76-4934 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-76-4935 
"FGG WILD-TYPE" 
D102V4, multiclass
[1] "Remove cluster labels:" "FGG MUTATED"           
clus
  FGG MUTATED FGG WILD-TYPE 
            2           201 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0122    TCGA-06-0124 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130    TCGA-06-0137 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0139    TCGA-06-0140    TCGA-06-0141    TCGA-06-0142    TCGA-06-0145 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0151    TCGA-06-0152    TCGA-06-0154    TCGA-06-0155    TCGA-06-0157 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0166    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0174    TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0189    TCGA-06-0192    TCGA-06-0195    TCGA-06-0213    TCGA-06-0214 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0939    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-5418    TCGA-08-0386    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-0688    TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-5301    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-14-0813    TCGA-14-0817    TCGA-14-0871    TCGA-14-1456    TCGA-14-1823 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-15-0742    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045    TCGA-16-1048 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-4068    TCGA-26-1439 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-2502    TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213    TCGA-28-5214 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219    TCGA-28-5220 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-1970    TCGA-32-1977    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-2491    TCGA-32-2494    TCGA-32-2495    TCGA-32-2498    TCGA-32-2615 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-2632    TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-4210    TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-41-2571    TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-76-4925    TCGA-76-4926 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4931    TCGA-76-4932    TCGA-76-4934 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-76-4935 
"FGG WILD-TYPE" 
D102V5, multiclass
        clus
vv       FGG MUTATED FGG WILD-TYPE
  CLUS_1           1            86
  CLUS_2           3           105
  CLUS_3           1            78
D102V6, multiclass
        clus
vv       FGG MUTATED FGG WILD-TYPE
  CLUS_1           1            36
  CLUS_2           1            19
  CLUS_3           1            24
  CLUS_4           1            25
D102V7, multiclass
        clus
vv       FGG MUTATED FGG WILD-TYPE
  CLUS_1           3            38
  CLUS_2           0            38
  CLUS_3           0            31
  CLUS_4           1            32
D102V8, multiclass
        clus
vv       FGG MUTATED FGG WILD-TYPE
  CLUS_1           1            46
  CLUS_2           2            26
  CLUS_3           1            67
D102V9, multiclass
[1] "Remove cluster labels:" "FGG MUTATED"           
clus
  FGG MUTATED FGG WILD-TYPE 
            1           140 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-14-1823    TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-15-1444    TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-2523    TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-5213    TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5220 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-1970    TCGA-32-1980    TCGA-32-1982    TCGA-32-2615    TCGA-32-2632 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-2634    TCGA-32-2638    TCGA-32-4213    TCGA-32-5222    TCGA-41-2571 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-41-2572    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-76-4925 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4931    TCGA-76-4932 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
D102V10, multiclass
[1] "Remove cluster labels:" "FGG MUTATED"           
clus
  FGG MUTATED FGG WILD-TYPE 
            1           140 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-14-1823    TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-15-1444    TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-26-5136    TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-1834    TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-27-2523    TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-28-5213    TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5220 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-1970    TCGA-32-1980    TCGA-32-1982    TCGA-32-2615    TCGA-32-2632 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-32-2634    TCGA-32-2638    TCGA-32-4213    TCGA-32-5222    TCGA-41-2571 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-41-2572    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-76-4925 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 
   TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4931    TCGA-76-4932 
"FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" "FGG WILD-TYPE" 

Clustering(103) Variable = OR10G8 MUTATION ANALYSIS
D103V1, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              1               84
  CLUS_3              2               78
D103V2, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1               58
  CLUS_3              1               78
D103V3, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              2               70
  CLUS_3              0               30
  CLUS_4              0               44
D103V4, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              1               80
  CLUS_3              1               48
D103V5, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1              107
  CLUS_3              1               78
D103V6, multiclass
[1] "Remove cluster labels:" "OR10G8 MUTATED"        
clus
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               2              106 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6391       TCGA-06-6693       TCGA-06-6694 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-6695       TCGA-06-6697       TCGA-06-6698       TCGA-06-6699 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-6700       TCGA-06-6701       TCGA-12-5295       TCGA-12-5299 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0862 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-14-1043       TCGA-14-1395       TCGA-14-1450       TCGA-15-1444 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5135       TCGA-26-5136 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-26-5139       TCGA-26-6173       TCGA-26-6174       TCGA-28-2501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-2510       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1979       TCGA-32-1980 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-32-5222       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4932       TCGA-76-4934       TCGA-76-4935 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-76-6191       TCGA-76-6192       TCGA-76-6193       TCGA-76-6280 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6283       TCGA-76-6285       TCGA-76-6286 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-76-6656       TCGA-76-6657       TCGA-76-6660       TCGA-76-6661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
D103V7, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              0               41
  CLUS_2              1               37
  CLUS_3              1               30
  CLUS_4              1               32
D103V8, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               28
  CLUS_3              2               66
D103V9, multiclass
[1] "Remove cluster labels:" "OR10G8 MUTATED"        
clus
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-08-0386       TCGA-12-0616 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0821       TCGA-12-1597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-12-5299       TCGA-14-0781       TCGA-14-0787       TCGA-14-0789 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0817       TCGA-14-1823       TCGA-14-1825 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-14-1829       TCGA-14-2554       TCGA-15-0742       TCGA-15-1444 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-16-0846       TCGA-16-1045       TCGA-19-2619       TCGA-19-2620 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2528       TCGA-28-1747 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2499       TCGA-28-2509       TCGA-28-2510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5220       TCGA-32-1970 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-2615       TCGA-32-2632 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4932 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
D103V10, multiclass
[1] "Remove cluster labels:" "OR10G8 MUTATED"        
clus
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5414 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-08-0386       TCGA-12-0616 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0821       TCGA-12-1597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-12-5299       TCGA-14-0781       TCGA-14-0787       TCGA-14-0789 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0817       TCGA-14-1823       TCGA-14-1825 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-14-1829       TCGA-14-2554       TCGA-15-0742       TCGA-15-1444 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-16-0846       TCGA-16-1045       TCGA-19-2619       TCGA-19-2620 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-5960 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1834       TCGA-27-1835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2528       TCGA-28-1747 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2499       TCGA-28-2509       TCGA-28-2510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5220       TCGA-32-1970 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-2615       TCGA-32-2632 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4213       TCGA-32-5222 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-3915       TCGA-41-4097 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-41-5651       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4932 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 

Clustering(104) Variable = PCMTD1 MUTATION ANALYSIS
D104V1, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              1               84
  CLUS_3              1               79
D104V2, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              0               59
  CLUS_3              1               78
D104V3, multiclass
[1] "Remove cluster labels:" "PCMTD1 MUTATED"        
clus
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               2              201 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0122       TCGA-06-0124       TCGA-06-0126       TCGA-06-0128 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0129       TCGA-06-0130       TCGA-06-0137       TCGA-06-0139 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0140       TCGA-06-0141       TCGA-06-0142       TCGA-06-0145 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0151       TCGA-06-0152       TCGA-06-0154       TCGA-06-0157 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0158       TCGA-06-0166       TCGA-06-0168       TCGA-06-0169 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0173       TCGA-06-0174       TCGA-06-0178       TCGA-06-0184 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0185       TCGA-06-0188       TCGA-06-0189       TCGA-06-0192 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0195       TCGA-06-0213       TCGA-06-0214       TCGA-06-0216 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0219       TCGA-06-0237       TCGA-06-0238       TCGA-06-0240 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0241       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0648       TCGA-06-0649       TCGA-06-0686       TCGA-06-0743 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0744       TCGA-06-0745       TCGA-06-0747       TCGA-06-0749 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0750       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0881       TCGA-06-0882 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0939       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2561       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2569       TCGA-06-2570 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-08-0386 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-0616       TCGA-12-0618       TCGA-12-0619       TCGA-12-0688 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-0692       TCGA-12-0821       TCGA-12-1597       TCGA-12-3649 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0786       TCGA-14-0787 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-0789       TCGA-14-0790       TCGA-14-0813       TCGA-14-0817 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1456       TCGA-14-1823       TCGA-14-1825 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-1829       TCGA-14-2554       TCGA-14-3476       TCGA-14-4157 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-15-0742       TCGA-16-0846       TCGA-16-0861       TCGA-16-1045 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-16-1048       TCGA-19-1390       TCGA-19-1790       TCGA-19-2619 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2623       TCGA-19-2624       TCGA-19-2625 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-2629       TCGA-19-2631       TCGA-19-4068       TCGA-26-1439 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-27-1830       TCGA-27-1831 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1833       TCGA-27-1834       TCGA-27-1835 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-1836       TCGA-27-1837       TCGA-27-1838       TCGA-27-2518 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-2519       TCGA-27-2521       TCGA-27-2523       TCGA-27-2524 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2527       TCGA-27-2528       TCGA-28-1747 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1977       TCGA-32-1982       TCGA-32-1986 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-1991       TCGA-32-2491       TCGA-32-2494       TCGA-32-2495 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-2498       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4208       TCGA-32-4209       TCGA-32-4210 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-4213       TCGA-32-4719       TCGA-32-5222 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-2573       TCGA-41-2575 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4935 
"PCMTD1 WILD-TYPE" 
D104V4, multiclass
[1] "Remove cluster labels:" "PCMTD1 MUTATED"        
clus
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               2              201 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0122       TCGA-06-0124       TCGA-06-0126       TCGA-06-0128 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0129       TCGA-06-0130       TCGA-06-0137       TCGA-06-0139 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0140       TCGA-06-0141       TCGA-06-0142       TCGA-06-0145 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0151       TCGA-06-0152       TCGA-06-0154       TCGA-06-0157 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0158       TCGA-06-0166       TCGA-06-0168       TCGA-06-0169 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0173       TCGA-06-0174       TCGA-06-0178       TCGA-06-0184 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0185       TCGA-06-0188       TCGA-06-0189       TCGA-06-0192 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0195       TCGA-06-0213       TCGA-06-0214       TCGA-06-0216 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0219       TCGA-06-0237       TCGA-06-0238       TCGA-06-0240 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0241       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0648       TCGA-06-0649       TCGA-06-0686       TCGA-06-0743 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0744       TCGA-06-0745       TCGA-06-0747       TCGA-06-0749 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0750       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0881       TCGA-06-0882 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0939       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2561       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2569       TCGA-06-2570 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-08-0386 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-0616       TCGA-12-0618       TCGA-12-0619       TCGA-12-0688 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-0692       TCGA-12-0821       TCGA-12-1597       TCGA-12-3649 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-3650       TCGA-12-3652       TCGA-12-3653       TCGA-12-5295 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0786       TCGA-14-0787 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-0789       TCGA-14-0790       TCGA-14-0813       TCGA-14-0817 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1456       TCGA-14-1823       TCGA-14-1825 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-1829       TCGA-14-2554       TCGA-14-3476       TCGA-14-4157 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-15-0742       TCGA-16-0846       TCGA-16-0861       TCGA-16-1045 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-16-1048       TCGA-19-1390       TCGA-19-1790       TCGA-19-2619 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-2620       TCGA-19-2623       TCGA-19-2624       TCGA-19-2625 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-2629       TCGA-19-2631       TCGA-19-4068       TCGA-26-1439 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-27-1830       TCGA-27-1831 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1833       TCGA-27-1834       TCGA-27-1835 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-1836       TCGA-27-1837       TCGA-27-1838       TCGA-27-2518 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-2519       TCGA-27-2521       TCGA-27-2523       TCGA-27-2524 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2527       TCGA-27-2528       TCGA-28-1747 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-1753       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-1970       TCGA-32-1977       TCGA-32-1982       TCGA-32-1986 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-1991       TCGA-32-2491       TCGA-32-2494       TCGA-32-2495 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-2498       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4208       TCGA-32-4209       TCGA-32-4210 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-4213       TCGA-32-4719       TCGA-32-5222 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2572       TCGA-41-2573       TCGA-41-2575 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4935 
"PCMTD1 WILD-TYPE" 
D104V5, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2              106
  CLUS_3              0               79
D104V6, multiclass
[1] "Remove cluster labels:" "PCMTD1 MUTATED"        
clus
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               2              106 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5415       TCGA-06-5417       TCGA-06-5418       TCGA-06-5856 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-6701       TCGA-12-5295       TCGA-12-5299       TCGA-12-5301 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-0740       TCGA-14-0781       TCGA-14-0862       TCGA-14-1043 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-1395       TCGA-14-1450       TCGA-15-1444       TCGA-19-5947 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-5950       TCGA-19-5951       TCGA-19-5952       TCGA-19-5953 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-5954       TCGA-19-5955       TCGA-19-5958       TCGA-19-5959 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-5135       TCGA-26-5136       TCGA-26-5139 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-28-2501       TCGA-28-2510 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1979       TCGA-32-1980       TCGA-32-5222 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4925 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4928       TCGA-76-4929 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4931       TCGA-76-4932       TCGA-76-4934       TCGA-76-4935 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-6191       TCGA-76-6192       TCGA-76-6193       TCGA-76-6280 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6283       TCGA-76-6285       TCGA-76-6286 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-6656       TCGA-76-6657       TCGA-76-6660       TCGA-76-6661 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
D104V7, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              1               40
  CLUS_2              0               38
  CLUS_3              1               30
  CLUS_4              1               32
D104V8, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               28
  CLUS_3              1               67
D104V9, multiclass
[1] "Remove cluster labels:" "PCMTD1 MUTATED"        
clus
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5415 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-08-0386       TCGA-12-0616       TCGA-12-0618       TCGA-12-0619 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3650       TCGA-12-3652 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5299       TCGA-14-0781 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-0787       TCGA-14-0789       TCGA-14-0790       TCGA-14-0817 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-1823       TCGA-14-1825       TCGA-14-1829       TCGA-14-2554 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-15-0742       TCGA-15-1444       TCGA-16-0846       TCGA-16-1045 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-1390       TCGA-19-2619       TCGA-19-2620       TCGA-19-2624 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-5960       TCGA-26-1442 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-27-1830       TCGA-27-1831 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1834       TCGA-27-1835       TCGA-27-1837 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-2519       TCGA-27-2521       TCGA-27-2523       TCGA-27-2524 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2509       TCGA-28-2510       TCGA-28-2513 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5215       TCGA-28-5216 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5218       TCGA-28-5220       TCGA-32-1970       TCGA-32-1980 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4213       TCGA-32-5222       TCGA-41-2571 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
D104V10, multiclass
[1] "Remove cluster labels:" "PCMTD1 MUTATED"        
clus
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               2              139 
      TCGA-02-0047       TCGA-02-0055       TCGA-02-2483       TCGA-02-2485 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-02-2486       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0141       TCGA-06-0157       TCGA-06-0158       TCGA-06-0168 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0219 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0644       TCGA-06-0645       TCGA-06-0646 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0649       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0882       TCGA-06-1804       TCGA-06-2557 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2558       TCGA-06-2559       TCGA-06-2561       TCGA-06-2562 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2563       TCGA-06-2564       TCGA-06-2565       TCGA-06-2567 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-2569       TCGA-06-2570       TCGA-06-5408       TCGA-06-5410 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5411       TCGA-06-5412       TCGA-06-5413       TCGA-06-5415 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-08-0386       TCGA-12-0616       TCGA-12-0618       TCGA-12-0619 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3650       TCGA-12-3652 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5299       TCGA-14-0781 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-0787       TCGA-14-0789       TCGA-14-0790       TCGA-14-0817 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-14-1823       TCGA-14-1825       TCGA-14-1829       TCGA-14-2554 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-15-0742       TCGA-15-1444       TCGA-16-0846       TCGA-16-1045 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-1390       TCGA-19-2619       TCGA-19-2620       TCGA-19-2624 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-5960       TCGA-26-1442 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-27-1830       TCGA-27-1831 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1834       TCGA-27-1835       TCGA-27-1837 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-2519       TCGA-27-2521       TCGA-27-2523       TCGA-27-2524 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-27-2526       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2509       TCGA-28-2510       TCGA-28-2513 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5213       TCGA-28-5215       TCGA-28-5216 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-28-5218       TCGA-28-5220       TCGA-32-1970       TCGA-32-1980 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2632       TCGA-32-2634 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-32-2638       TCGA-32-4213       TCGA-32-5222       TCGA-41-2571 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" "PCMTD1 WILD-TYPE" 

Clustering(105) Variable = PROKR2 MUTATION ANALYSIS
D105V1, multiclass
        clus
vv       PROKR2 MUTATED PROKR2 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              1               84
  CLUS_3              3               77
D105V2, multiclass
        clus
vv       PROKR2 MUTATED PROKR2 WILD-TYPE
  CLUS_1              1              102
  CLUS_2              3               56
  CLUS_3              1               78
D105V3, multiclass
        clus
vv       PROKR2 MUTATED PROKR2 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              1               71
  CLUS_3              1               29
  CLUS_4              1               43
D105V4, multiclass
        clus
vv       PROKR2 MUTATED PROKR2 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              3               78
  CLUS_3              1               48
D105V5, multiclass
        clus
vv       PROKR2 MUTATED PROKR2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              5              103
  CLUS_3              0               79
D105V6, multiclass
[1] "Remove cluster labels:" "PROKR2 MUTATED"        
clus
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               2              106 
      TCGA-06-0650       TCGA-06-1804       TCGA-06-1806       TCGA-06-5408 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-12-5295 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-12-5299       TCGA-12-5301       TCGA-14-0740       TCGA-14-0781 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-15-1444       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1442 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-2510       TCGA-28-5204       TCGA-28-5207 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1979       TCGA-32-1980 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-32-5222       TCGA-41-5651       TCGA-41-6646       TCGA-74-6573 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-4926       TCGA-76-4927       TCGA-76-4928       TCGA-76-4929 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-4931       TCGA-76-4932       TCGA-76-4934       TCGA-76-4935 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-6191       TCGA-76-6192       TCGA-76-6193       TCGA-76-6280 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6283       TCGA-76-6285       TCGA-76-6286 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-6656       TCGA-76-6657       TCGA-76-6660       TCGA-76-6661 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
D105V7, multiclass
[1] "Remove cluster labels:" "PROKR2 MUTATED"        
clus
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0882       TCGA-06-0939 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2570       TCGA-06-5408 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-12-0692       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5301       TCGA-14-0813 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-0871       TCGA-14-1823       TCGA-16-0846 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-1390       TCGA-19-1790       TCGA-19-2619       TCGA-19-2625 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5953       TCGA-19-5954 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-5955       TCGA-19-5958       TCGA-19-5959       TCGA-19-5960 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-27-1830       TCGA-27-1831 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1833       TCGA-27-1834       TCGA-27-1836 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-27-2518       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-5208       TCGA-28-5214       TCGA-32-1970 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-1991       TCGA-32-4210 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-5222       TCGA-41-2573       TCGA-41-2575 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-81-5910 
"PROKR2 WILD-TYPE" 
D105V8, multiclass
[1] "Remove cluster labels:" "PROKR2 MUTATED"        
clus
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               2              141 
      TCGA-02-0003       TCGA-02-2470       TCGA-02-2485       TCGA-06-0126 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0154 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-0155       TCGA-06-0189       TCGA-06-0238       TCGA-06-0644 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0875       TCGA-06-0876       TCGA-06-0877 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-0878       TCGA-06-0879       TCGA-06-0882       TCGA-06-0939 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2570       TCGA-06-5408 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-12-0692       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5301       TCGA-14-0813 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-14-0862       TCGA-14-0871       TCGA-14-1823       TCGA-16-0846 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-1390       TCGA-19-1790       TCGA-19-2619       TCGA-19-2625 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5953       TCGA-19-5954 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-19-5955       TCGA-19-5958       TCGA-19-5959       TCGA-19-5960 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-26-6173       TCGA-26-6174       TCGA-27-1830       TCGA-27-1831 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-27-1832       TCGA-27-1833       TCGA-27-1834       TCGA-27-1836 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-27-2518       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-28-2501       TCGA-28-5208       TCGA-28-5214       TCGA-32-1970 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-1991       TCGA-32-4210 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-32-4211       TCGA-32-5222       TCGA-41-2573       TCGA-41-2575 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-41-3392       TCGA-41-3393       TCGA-41-3915       TCGA-41-4097 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-41-5651       TCGA-41-6646       TCGA-74-6573       TCGA-74-6575 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-74-6577       TCGA-74-6578       TCGA-74-6584       TCGA-76-4926 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-6192       TCGA-76-6193       TCGA-76-6282 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-6283       TCGA-76-6285       TCGA-76-6656       TCGA-76-6657 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-76-6660       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" "PROKR2 WILD-TYPE" 
      TCGA-81-5910 
"PROKR2 WILD-TYPE" 
D105V9, multiclass
        clus
vv       PROKR2 MUTATED PROKR2 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              4               58
  CLUS_3              1               34
D105V10, multiclass
        clus
vv       PROKR2 MUTATED PROKR2 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              2               19
  CLUS_3              1               58

Clustering(106) Variable = SHB MUTATION ANALYSIS
D106V1, multiclass
        clus
vv       SHB MUTATED SHB WILD-TYPE
  CLUS_1           1            75
  CLUS_2           0            85
  CLUS_3           2            78
D106V2, multiclass
        clus
vv       SHB MUTATED SHB WILD-TYPE
  CLUS_1           2           101
  CLUS_2           1            58
  CLUS_3           0            79
D106V3, multiclass
[1] "Remove cluster labels:" "SHB MUTATED"           
clus
  SHB MUTATED SHB WILD-TYPE 
            2           201 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0122    TCGA-06-0124 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130    TCGA-06-0137 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0139    TCGA-06-0140    TCGA-06-0141    TCGA-06-0142    TCGA-06-0145 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0151    TCGA-06-0152    TCGA-06-0154    TCGA-06-0155    TCGA-06-0157 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0166    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0174    TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0189    TCGA-06-0192    TCGA-06-0195    TCGA-06-0213    TCGA-06-0214 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240    TCGA-06-0241 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648    TCGA-06-0649 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745    TCGA-06-0747 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876    TCGA-06-0877 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882    TCGA-06-0939 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-08-0386    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0688 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5301    TCGA-14-0786 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0813    TCGA-14-0817 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0871    TCGA-14-1456    TCGA-14-1823    TCGA-14-1825    TCGA-14-1829 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-2554    TCGA-14-3476    TCGA-14-4157    TCGA-15-0742    TCGA-16-0846 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-16-0861    TCGA-16-1045    TCGA-16-1048    TCGA-19-1390    TCGA-19-1790 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-2619    TCGA-19-2620    TCGA-19-2623    TCGA-19-2624    TCGA-19-2625 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-2629    TCGA-19-2631    TCGA-19-4068    TCGA-26-1439    TCGA-26-5132 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838    TCGA-27-2518 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524    TCGA-27-2526 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753    TCGA-28-2502 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204    TCGA-28-5207 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5208    TCGA-28-5209    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-32-1970 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-1977    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2498    TCGA-32-2615    TCGA-32-2632 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932    TCGA-76-4934 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4935 
"SHB WILD-TYPE" 
D106V4, multiclass
[1] "Remove cluster labels:" "SHB MUTATED"           
clus
  SHB MUTATED SHB WILD-TYPE 
            2           201 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0122    TCGA-06-0124 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130    TCGA-06-0137 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0139    TCGA-06-0140    TCGA-06-0141    TCGA-06-0142    TCGA-06-0145 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0151    TCGA-06-0152    TCGA-06-0154    TCGA-06-0155    TCGA-06-0157 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0166    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0174    TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0189    TCGA-06-0192    TCGA-06-0195    TCGA-06-0213    TCGA-06-0214 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240    TCGA-06-0241 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648    TCGA-06-0649 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745    TCGA-06-0747 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876    TCGA-06-0877 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882    TCGA-06-0939 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-08-0386    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0688 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5301    TCGA-14-0786 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0813    TCGA-14-0817 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0871    TCGA-14-1456    TCGA-14-1823    TCGA-14-1825    TCGA-14-1829 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-2554    TCGA-14-3476    TCGA-14-4157    TCGA-15-0742    TCGA-16-0846 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-16-0861    TCGA-16-1045    TCGA-16-1048    TCGA-19-1390    TCGA-19-1790 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-2619    TCGA-19-2620    TCGA-19-2623    TCGA-19-2624    TCGA-19-2625 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-2629    TCGA-19-2631    TCGA-19-4068    TCGA-26-1439    TCGA-26-5132 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838    TCGA-27-2518 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524    TCGA-27-2526 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753    TCGA-28-2502 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204    TCGA-28-5207 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5208    TCGA-28-5209    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-32-1970 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-1977    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2498    TCGA-32-2615    TCGA-32-2632 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932    TCGA-76-4934 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4935 
"SHB WILD-TYPE" 
D106V5, multiclass
        clus
vv       SHB MUTATED SHB WILD-TYPE
  CLUS_1           1            86
  CLUS_2           1           107
  CLUS_3           1            78
D106V6, multiclass
[1] "Remove cluster labels:" "SHB MUTATED"           
clus
  SHB MUTATED SHB WILD-TYPE 
            2           106 
   TCGA-06-0650    TCGA-06-1804    TCGA-06-1806    TCGA-06-5408    TCGA-06-5410 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-12-5295    TCGA-12-5301    TCGA-14-0740 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0781    TCGA-14-0862    TCGA-14-1043    TCGA-14-1395    TCGA-14-1450 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-15-1444    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-2501    TCGA-28-2510    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5209    TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-1979    TCGA-32-1980    TCGA-32-5222    TCGA-41-5651    TCGA-41-6646 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6283    TCGA-76-6285 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6660    TCGA-76-6661 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-6662    TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-87-5896 
"SHB WILD-TYPE" 
D106V7, multiclass
[1] "Remove cluster labels:" "SHB MUTATED"           
clus
  SHB MUTATED SHB WILD-TYPE 
            1           142 
   TCGA-02-0003    TCGA-02-2470    TCGA-02-2485    TCGA-06-0126    TCGA-06-0128 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0154    TCGA-06-0155    TCGA-06-0189 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0238    TCGA-06-0644    TCGA-06-0650    TCGA-06-0875    TCGA-06-0876 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0882    TCGA-06-0939 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-1804    TCGA-06-1806    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-6390    TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-6697    TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-08-0386    TCGA-12-0692    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5301    TCGA-14-0813 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0862    TCGA-14-0871    TCGA-14-1823    TCGA-16-0846    TCGA-19-1390 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2625    TCGA-19-2631 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1836    TCGA-27-2518    TCGA-27-2528 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-1747    TCGA-28-1753    TCGA-28-2501    TCGA-28-5208    TCGA-28-5214 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-1970    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-4210 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-4211    TCGA-32-5222    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4932    TCGA-76-6192    TCGA-76-6193    TCGA-76-6283    TCGA-76-6285 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-6656    TCGA-76-6657    TCGA-76-6660    TCGA-76-6662    TCGA-76-6663 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-6664    TCGA-81-5910 
"SHB WILD-TYPE" "SHB WILD-TYPE" 
D106V8, multiclass
[1] "Remove cluster labels:" "SHB MUTATED"           
clus
  SHB MUTATED SHB WILD-TYPE 
            1           142 
   TCGA-02-0003    TCGA-02-2470    TCGA-02-2485    TCGA-06-0126    TCGA-06-0128 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0154    TCGA-06-0155    TCGA-06-0189 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0238    TCGA-06-0644    TCGA-06-0650    TCGA-06-0875    TCGA-06-0876 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0882    TCGA-06-0939 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-1804    TCGA-06-1806    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-6390    TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-6697    TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-08-0386    TCGA-12-0692    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5301    TCGA-14-0813 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0862    TCGA-14-0871    TCGA-14-1823    TCGA-16-0846    TCGA-19-1390 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2625    TCGA-19-2631 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-5960    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1836    TCGA-27-2518    TCGA-27-2528 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-1747    TCGA-28-1753    TCGA-28-2501    TCGA-28-5208    TCGA-28-5214 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-1970    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-4210 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-4211    TCGA-32-5222    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4932    TCGA-76-6192    TCGA-76-6193    TCGA-76-6283    TCGA-76-6285 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-6656    TCGA-76-6657    TCGA-76-6660    TCGA-76-6662    TCGA-76-6663 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-6664    TCGA-81-5910 
"SHB WILD-TYPE" "SHB WILD-TYPE" 
D106V9, multiclass
[1] "Remove cluster labels:" "SHB MUTATED"           
clus
  SHB MUTATED SHB WILD-TYPE 
            1           140 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-14-0781 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817    TCGA-14-1823 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742    TCGA-15-1444 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619    TCGA-19-2620 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960    TCGA-26-1442 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1834 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513    TCGA-28-2514 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
D106V10, multiclass
[1] "Remove cluster labels:" "SHB MUTATED"           
clus
  SHB MUTATED SHB WILD-TYPE 
            1           140 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-0882 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-14-0781 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817    TCGA-14-1823 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742    TCGA-15-1444 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619    TCGA-19-2620 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960    TCGA-26-1442 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1834 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513    TCGA-28-2514 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" "SHB WILD-TYPE" 

Clustering(107) Variable = CYP3A5 MUTATION ANALYSIS
D107V1, multiclass
        clus
vv       CYP3A5 MUTATED CYP3A5 WILD-TYPE
  CLUS_1              1               75
  CLUS_2              1               84
  CLUS_3              1               79
D107V2, multiclass
        clus
vv       CYP3A5 MUTATED CYP3A5 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              1               58
  CLUS_3              0               79
D107V3, multiclass
[1] "Remove cluster labels:" "CYP3A5 MUTATED"        
clus
  CYP3A5 MUTATED CYP3A5 WILD-TYPE 
               1              202 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0122       TCGA-06-0124       TCGA-06-0126       TCGA-06-0128 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0129       TCGA-06-0130       TCGA-06-0137       TCGA-06-0139 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0140       TCGA-06-0141       TCGA-06-0142       TCGA-06-0145 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0151       TCGA-06-0152       TCGA-06-0154       TCGA-06-0155 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0157       TCGA-06-0158       TCGA-06-0166       TCGA-06-0168 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0213       TCGA-06-0214 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0216       TCGA-06-0219       TCGA-06-0237       TCGA-06-0238 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0240       TCGA-06-0241       TCGA-06-0644       TCGA-06-0645 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0646       TCGA-06-0648       TCGA-06-0649       TCGA-06-0686 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0743       TCGA-06-0744       TCGA-06-0745       TCGA-06-0747 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0749       TCGA-06-0750       TCGA-06-0875       TCGA-06-0876 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0877       TCGA-06-0878       TCGA-06-0879       TCGA-06-0881 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0882       TCGA-06-0939       TCGA-06-2557       TCGA-06-2558 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5414       TCGA-06-5415       TCGA-06-5417 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-5418       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0688       TCGA-12-0692       TCGA-12-0821 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-12-1597       TCGA-12-3649       TCGA-12-3650       TCGA-12-3652 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5299       TCGA-12-5301 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-14-0786       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0817       TCGA-14-0871       TCGA-14-1456 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-14-1823       TCGA-14-1825       TCGA-14-1829       TCGA-14-2554 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-14-3476       TCGA-14-4157       TCGA-15-0742       TCGA-16-0846 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-16-0861       TCGA-16-1045       TCGA-16-1048       TCGA-19-1390 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2629       TCGA-19-2631       TCGA-19-4068 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-26-1439       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1833       TCGA-27-1834 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-27-1835       TCGA-27-1836       TCGA-27-1837       TCGA-27-1838 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-27-2518       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2527       TCGA-27-2528 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-1747       TCGA-28-1753       TCGA-28-2502       TCGA-28-2509 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5214 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-5220       TCGA-32-1970       TCGA-32-1977       TCGA-32-1982 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-1986       TCGA-32-1991       TCGA-32-2491       TCGA-32-2494 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-2495       TCGA-32-2498       TCGA-32-2615       TCGA-32-2632 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4208       TCGA-32-4209 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-4210       TCGA-32-4211       TCGA-32-4213       TCGA-32-4719 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-5222       TCGA-41-2571       TCGA-41-2572       TCGA-41-2573 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-41-2575       TCGA-41-3392       TCGA-41-3393       TCGA-41-3915 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-41-4097       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
D107V4, multiclass
[1] "Remove cluster labels:" "CYP3A5 MUTATED"        
clus
  CYP3A5 MUTATED CYP3A5 WILD-TYPE 
               1              202 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0122       TCGA-06-0124       TCGA-06-0126       TCGA-06-0128 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0129       TCGA-06-0130       TCGA-06-0137       TCGA-06-0139 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0140       TCGA-06-0141       TCGA-06-0142       TCGA-06-0145 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0151       TCGA-06-0152       TCGA-06-0154       TCGA-06-0155 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0157       TCGA-06-0158       TCGA-06-0166       TCGA-06-0168 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0213       TCGA-06-0214 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0216       TCGA-06-0219       TCGA-06-0237       TCGA-06-0238 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0240       TCGA-06-0241       TCGA-06-0644       TCGA-06-0645 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0646       TCGA-06-0648       TCGA-06-0649       TCGA-06-0686 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0743       TCGA-06-0744       TCGA-06-0745       TCGA-06-0747 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0749       TCGA-06-0750       TCGA-06-0875       TCGA-06-0876 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0877       TCGA-06-0878       TCGA-06-0879       TCGA-06-0881 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-0882       TCGA-06-0939       TCGA-06-2557       TCGA-06-2558 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5414       TCGA-06-5415       TCGA-06-5417 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-06-5418       TCGA-08-0386       TCGA-12-0616       TCGA-12-0618 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0688       TCGA-12-0692       TCGA-12-0821 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-12-1597       TCGA-12-3649       TCGA-12-3650       TCGA-12-3652 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5295       TCGA-12-5299       TCGA-12-5301 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-14-0786       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0817       TCGA-14-0871       TCGA-14-1456 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-14-1823       TCGA-14-1825       TCGA-14-1829       TCGA-14-2554 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-14-3476       TCGA-14-4157       TCGA-15-0742       TCGA-16-0846 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-16-0861       TCGA-16-1045       TCGA-16-1048       TCGA-19-1390 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2629       TCGA-19-2631       TCGA-19-4068 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-26-1439       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-27-1830 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-27-1831       TCGA-27-1832       TCGA-27-1833       TCGA-27-1834 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-27-1835       TCGA-27-1836       TCGA-27-1837       TCGA-27-1838 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-27-2518       TCGA-27-2519       TCGA-27-2521       TCGA-27-2523 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-27-2524       TCGA-27-2526       TCGA-27-2527       TCGA-27-2528 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-1747       TCGA-28-1753       TCGA-28-2502       TCGA-28-2509 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5209       TCGA-28-5213       TCGA-28-5214 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-28-5220       TCGA-32-1970       TCGA-32-1977       TCGA-32-1982 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-1986       TCGA-32-1991       TCGA-32-2491       TCGA-32-2494 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-2495       TCGA-32-2498       TCGA-32-2615       TCGA-32-2632 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-2634       TCGA-32-2638       TCGA-32-4208       TCGA-32-4209 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-4210       TCGA-32-4211       TCGA-32-4213       TCGA-32-4719 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-32-5222       TCGA-41-2571       TCGA-41-2572       TCGA-41-2573 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-41-2575       TCGA-41-3392       TCGA-41-3393       TCGA-41-3915 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-41-4097       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935 
"CYP3A5 WILD-TYPE" "CYP3A5 WILD-TYPE" 
D107V5, multiclass
        clus
vv       CYP3A5 MUTATED CYP3A5 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2              106
  CLUS_3              2               77
D107V6, multiclass
        clus
vv       CYP3A5 MUTATED CYP3A5 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               19
  CLUS_3              1               24
  CLUS_4              0               26
D107V7, multiclass
        clus
vv       CYP3A5 MUTATED CYP3A5 WILD-TYPE
  CLUS_1              2               39
  CLUS_2              1               37
  CLUS_3              0               31
  CLUS_4              0               33
D107V8, multiclass
        clus
vv       CYP3A5 MUTATED CYP3A5 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              2               26
  CLUS_3              1               67
D107V9, multiclass
        clus
vv       CYP3A5 MUTATED CYP3A5 WILD-TYPE
  CLUS_1              0               44
  CLUS_2              2               60
  CLUS_3              1               34
D107V10, multiclass
        clus
vv       CYP3A5 MUTATED CYP3A5 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              0               21
  CLUS_3              1               58

Clustering(108) Variable = FRMD7 MUTATION ANALYSIS
D108V1, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             2              74
  CLUS_2             1              84
  CLUS_3             1              79
D108V2, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             1              58
  CLUS_3             1              78
D108V3, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             1              71
  CLUS_3             0              30
  CLUS_4             0              44
D108V4, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              79
  CLUS_3             0              49
D108V5, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1             107
  CLUS_3             2              77
D108V6, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              20
  CLUS_3             0              25
  CLUS_4             2              24
D108V7, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             0              41
  CLUS_2             1              37
  CLUS_3             1              30
  CLUS_4             2              31
D108V8, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              28
  CLUS_3             3              65
D108V9, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             2              60
  CLUS_3             0              35
D108V10, multiclass
        clus
vv       FRMD7 MUTATED FRMD7 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             1              20
  CLUS_3             1              58

Clustering(109) Variable = KCNB2 MUTATION ANALYSIS
D109V1, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             3              73
  CLUS_2             1              84
  CLUS_3             1              79
D109V2, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             4              99
  CLUS_2             0              59
  CLUS_3             1              78
D109V3, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             0              72
  CLUS_3             0              30
  CLUS_4             1              43
D109V4, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             2              79
  CLUS_3             0              49
D109V5, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             3             105
  CLUS_3             3              76
D109V6, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              19
  CLUS_3             1              24
  CLUS_4             0              26
D109V7, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             2              39
  CLUS_2             0              38
  CLUS_3             1              30
  CLUS_4             0              33
D109V8, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             2              26
  CLUS_3             0              68
D109V9, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             2              60
  CLUS_3             1              34
D109V10, multiclass
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             0              21
  CLUS_3             1              58

Clustering(110) Variable = KDR MUTATION ANALYSIS
D110V1, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           2            74
  CLUS_2           5            80
  CLUS_3           1            79
D110V2, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           2           101
  CLUS_2           1            58
  CLUS_3           5            74
D110V3, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           1            56
  CLUS_2           1            71
  CLUS_3           3            27
  CLUS_4           1            43
D110V4, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           1            72
  CLUS_2           0            81
  CLUS_3           5            44
D110V5, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           2            85
  CLUS_2           2           106
  CLUS_3           4            75
D110V6, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           1            36
  CLUS_2           0            20
  CLUS_3           1            24
  CLUS_4           1            25
D110V7, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           3            38
  CLUS_2           0            38
  CLUS_3           0            31
  CLUS_4           2            31
D110V8, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            27
  CLUS_3           3            65
D110V9, multiclass
[1] "Remove cluster labels:" "KDR MUTATED"           
clus
  KDR MUTATED KDR WILD-TYPE 
            1           140 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-1804 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386    TCGA-12-0616 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597    TCGA-12-3650 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-14-0781 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817    TCGA-14-1823 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742    TCGA-15-1444 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619    TCGA-19-2620 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960    TCGA-26-1442 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1834 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513    TCGA-28-2514 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
D110V10, multiclass
[1] "Remove cluster labels:" "KDR MUTATED"           
clus
  KDR MUTATED KDR WILD-TYPE 
            1           140 
   TCGA-02-0047    TCGA-02-0055    TCGA-02-2483    TCGA-02-2485    TCGA-02-2486 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0132    TCGA-06-0141    TCGA-06-0157 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0158    TCGA-06-0168    TCGA-06-0174    TCGA-06-0178    TCGA-06-0184 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0219    TCGA-06-0238    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0878    TCGA-06-1804 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-2557    TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-2563    TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-2570    TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-5413    TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-06-5856    TCGA-06-5858    TCGA-06-5859    TCGA-08-0386    TCGA-12-0616 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0821    TCGA-12-1597    TCGA-12-3650 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-14-0781 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0817    TCGA-14-1823 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-15-0742    TCGA-15-1444 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-16-0846    TCGA-16-1045    TCGA-19-1390    TCGA-19-2619    TCGA-19-2620 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-5960    TCGA-26-1442 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-26-5139    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1834 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1837    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-28-2499    TCGA-28-2509    TCGA-28-2510    TCGA-28-2513    TCGA-28-2514 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5213 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5220    TCGA-32-1970 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4213    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-76-4925    TCGA-76-4926 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"              "MIR_CNMF" 
                     V4                      V5                      V6 
    "MIR_CHIERARCHICAL"               "CN_CNMF"      "METHLYATION_CNMF" 
                     V7                      V8                      V9 
            "RPPA_CNMF"    "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" 
                    V10 
"MRNASEQ_CHIERARCHICAL" 
> q(save="no")
