		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	341	0.3792	1	0.69428	1	0.95498	1	0.63963	1	0.17908	1	0.33985	1	0.86044	1	0.3803	1
1q gain	0 (0%)	310	0.00012214	0.0707	0.001875	1	0.48962	1	0.50408	1	0.012861	1	0.0049911	1	0.036887	1	0.39146	1
2p gain	0 (0%)	321	9.1862e-05	0.0537	0.00010253	0.0598	0.36829	1	0.8024	1	0.014559	1	0.023634	1	0.47141	1	0.08377	1
2q gain	0 (0%)	331	0.0052746	1	0.0018745	1	0.50888	1	0.92793	1	0.078134	1	0.12668	1	0.56735	1	0.20637	1
3p gain	0 (0%)	323	0.48881	1	8.2588e-05	0.0486	0.046811	1	0.58313	1	0.0032341	1	0.0032582	1	0.00046326	0.263	0.11346	1
3q gain	0 (0%)	240	0.00082464	0.464	4.2678e-05	0.0254	0.22801	1	0.51965	1	0.017811	1	0.0038388	1	0.00011171	0.0649	0.38727	1
4p gain	0 (0%)	339	0.015345	1	0.064019	1	0.23083	1	1	1	0.16623	1	0.22798	1	0.044258	1	0.21682	1
4q gain	0 (0%)	343	0.066086	1	0.10256	1	0.67858	1	1	1	0.57619	1	0.63001	1	0.91659	1	0.80502	1
5p gain	0 (0%)	264	5.6393e-09	3.49e-06	0.032589	1	0.66604	1	0.42984	1	0.57882	1	0.4094	1	1	1	0.50591	1
5q gain	0 (0%)	324	0.043249	1	0.69268	1	1	1	1	1	0.81884	1	0.46147	1	1	1	0.4236	1
6p gain	0 (0%)	326	0.017244	1	0.046554	1	0.21472	1	0.54651	1	0.90196	1	0.87117	1	0.87064	1	0.06051	1
6q gain	0 (0%)	333	0.41193	1	0.082072	1	0.67736	1	0.7637	1	0.72713	1	0.37765	1	1	1	0.18961	1
7p gain	0 (0%)	274	2.9546e-05	0.0176	0.00040615	0.231	0.62271	1	0.64007	1	0.81655	1	0.93919	1	0.75811	1	0.36356	1
7q gain	0 (0%)	304	7.083e-10	4.43e-07	1.0098e-06	0.000612	0.48832	1	0.92025	1	0.27532	1	0.11215	1	0.15956	1	0.76239	1
8p gain	0 (0%)	299	0.0079594	1	0.002003	1	0.72763	1	0.11397	1	0.38091	1	0.31331	1	0.14606	1	0.2732	1
8q gain	0 (0%)	207	4.9719e-09	3.08e-06	0.00034122	0.195	0.51953	1	0.21946	1	0.52011	1	0.51899	1	0.42554	1	0.066116	1
9p gain	0 (0%)	309	0.00011001	0.064	0.05949	1	0.42109	1	0.3031	1	0.28772	1	0.64347	1	0.37224	1	0.7436	1
9q gain	0 (0%)	294	0.00068632	0.387	0.0312	1	0.23934	1	0.10927	1	0.21546	1	0.1307	1	0.36918	1	0.51605	1
10p gain	0 (0%)	340	0.53907	1	0.0027806	1	0.79843	1	0.75176	1	0.054985	1	0.068933	1	0.12948	1	0.23806	1
10q gain	0 (0%)	346	0.19361	1	0.33841	1	0.57047	1	0.25633	1	1	1	1	1	0.67565	1	1	1
11p gain	0 (0%)	335	0.00020192	0.116	0.67008	1	0.83275	1	0.39868	1	0.75433	1	0.8449	1	0.81853	1	0.30794	1
11q gain	0 (0%)	335	0.029746	1	0.49414	1	0.36248	1	1	1	0.19491	1	0.28408	1	0.95154	1	0.53341	1
12p gain	0 (0%)	287	1.6377e-07	1e-04	1.8913e-05	0.0113	0.66266	1	0.72499	1	0.0039875	1	0.00061189	0.346	9.9495e-05	0.0581	0.0088949	1
12q gain	0 (0%)	326	0.19383	1	0.0041952	1	0.17331	1	0.69526	1	0.064466	1	0.0017438	0.973	0.0172	1	0.096198	1
13q gain	0 (0%)	334	0.10114	1	0.035201	1	0.35004	1	0.64494	1	0.60305	1	0.90447	1	0.70461	1	0.30794	1
14q gain	0 (0%)	294	0.00013129	0.0756	0.015916	1	0.44543	1	0.066651	1	0.027051	1	0.027049	1	0.052899	1	0.044551	1
15q gain	0 (0%)	340	0.48945	1	0.27242	1	0.54243	1	0.44416	1	0.87182	1	0.25473	1	0.8137	1	0.28983	1
16p gain	0 (0%)	330	0.0078536	1	8.4477e-05	0.0496	0.025886	1	0.36183	1	0.24107	1	0.9576	1	0.78092	1	0.4909	1
16q gain	0 (0%)	322	0.0018033	1	0.0042262	1	0.78258	1	0.6587	1	0.02658	1	0.43686	1	0.88412	1	0.10493	1
17p gain	0 (0%)	332	0.00036744	0.209	0.082378	1	0.54375	1	0.46842	1	0.17981	1	0.56103	1	0.18079	1	0.13057	1
17q gain	0 (0%)	327	0.00062467	0.353	0.096343	1	0.089322	1	0.51356	1	0.18967	1	0.051935	1	0.25576	1	0.45614	1
18p gain	0 (0%)	297	0.0001222	0.0707	0.058147	1	0.31798	1	0.38549	1	0.1137	1	0.0048968	1	0.43045	1	0.88923	1
18q gain	0 (0%)	332	0.0059015	1	0.00017731	0.102	0.53084	1	0.39868	1	0.019169	1	0.017071	1	0.0019043	1	1	1
19p gain	0 (0%)	340	0.33241	1	0.0049465	1	0.094528	1	0.08425	1	0.38904	1	0.023114	1	0.19284	1	0.23806	1
19q gain	0 (0%)	331	0.18659	1	0.058112	1	0.78795	1	0.40195	1	0.15755	1	0.31863	1	0.1147	1	0.82489	1
20p gain	0 (0%)	284	7.504e-06	0.00451	7.9034e-05	0.0466	0.062017	1	0.17483	1	0.61705	1	0.36452	1	0.2186	1	0.26289	1
20q gain	0 (0%)	280	8.4634e-07	0.000515	0.00011228	0.0651	0.92412	1	0.88442	1	0.49461	1	0.72582	1	0.56423	1	0.17897	1
21q gain	0 (0%)	343	0.18187	1	0.77263	1	1	1	1	1	0.019285	1	0.055196	1	0.032008	1	1	1
22q gain	0 (0%)	310	0.00015986	0.0919	8.2145e-05	0.0484	0.64105	1	0.40527	1	0.07753	1	0.018974	1	0.3974	1	0.94966	1
Xq gain	0 (0%)	329	0.0014515	0.813	0.088752	1	0.23668	1	0.17691	1	0.5031	1	0.91288	1	0.76799	1	0.91817	1
1p loss	0 (0%)	336	4.3488e-10	2.72e-07	9.7016e-07	0.000589	0.11385	1	0.12346	1	0.012862	1	0.015561	1	0.018313	1	0.51713	1
2p loss	0 (0%)	346	0.96934	1	0.044052	1	0.68434	1	1	1	0.11466	1	0.074255	1	0.02597	1	0.14486	1
2q loss	0 (0%)	342	0.39425	1	0.093899	1	0.22852	1	0.44867	1	0.014727	1	0.013987	1	0.083718	1	0.024349	1
3p loss	0 (0%)	219	8.2427e-13	5.18e-10	3.1562e-07	0.000193	0.30389	1	0.76626	1	0.36547	1	0.17578	1	0.13784	1	0.76491	1
3q loss	0 (0%)	330	0.016821	1	0.11526	1	0.33083	1	0.42769	1	0.8813	1	0.95942	1	0.2856	1	0.831	1
4p loss	0 (0%)	270	5.832e-12	3.66e-09	2.9767e-08	1.83e-05	0.13533	1	0.0374	1	0.0022697	1	0.00012281	0.0709	5.8173e-05	0.0344	0.059054	1
4q loss	0 (0%)	297	5.7324e-09	3.54e-06	3.382e-06	0.00204	0.29267	1	0.14673	1	0.014799	1	0.002775	1	0.0012783	0.717	0.049811	1
5p loss	0 (0%)	344	0.03138	1	0.0059774	1	0.61148	1	0.82051	1	0.076327	1	0.088792	1	0.012153	1	0.78037	1
5q loss	0 (0%)	289	2.1547e-14	1.36e-11	7.2711e-10	4.54e-07	0.43417	1	0.52807	1	0.0057458	1	4.5279e-05	0.0269	0.036943	1	1	1
6p loss	0 (0%)	333	0.096958	1	0.012689	1	0.0042131	1	0.16918	1	0.031706	1	0.1111	1	0.0081025	1	0.26626	1
6q loss	0 (0%)	331	0.19904	1	0.070076	1	0.010568	1	0.072535	1	0.37927	1	0.39162	1	0.054538	1	0.30815	1
7p loss	0 (0%)	347	0.9824	1	0.38838	1	NA	NA	NA	NA	0.3907	1	0.45231	1	0.22972	1	1	1
7q loss	0 (0%)	344	0.15467	1	0.3712	1	0.75237	1	0.75688	1	0.31521	1	0.906	1	0.16387	1	0.34856	1
8p loss	0 (0%)	274	1.7957e-06	0.00109	6.6589e-06	0.00401	0.89106	1	1	1	0.61931	1	0.4853	1	0.10566	1	0.47711	1
8q loss	0 (0%)	345	0.32213	1	0.060447	1	0.8451	1	0.65804	1	1	1	0.49561	1	0.3079	1	0.76852	1
9p loss	0 (0%)	259	1.6584e-09	1.03e-06	2.2482e-08	1.38e-05	0.48439	1	0.84682	1	0.31139	1	0.069576	1	0.0071832	1	0.24143	1
9q loss	0 (0%)	321	0.003446	1	0.067865	1	0.89979	1	0.477	1	0.82908	1	0.85521	1	0.74823	1	0.12304	1
10p loss	0 (0%)	300	8.9333e-05	0.0523	0.065611	1	0.26984	1	0.59353	1	0.93707	1	0.80499	1	0.57062	1	0.36236	1
10q loss	0 (0%)	323	8.1238e-08	4.98e-05	0.0066735	1	0.48032	1	0.74201	1	0.033397	1	0.0012307	0.692	4.5771e-05	0.0271	0.51396	1
11p loss	0 (0%)	304	0.00025684	0.147	0.04444	1	0.11004	1	0.69922	1	0.0017333	0.969	0.0059758	1	0.029745	1	0.69426	1
11q loss	0 (0%)	283	2.1905e-13	1.38e-10	7.2849e-05	0.0431	0.86409	1	0.59353	1	0.011524	1	0.050969	1	0.02945	1	0.79208	1
12p loss	0 (0%)	339	0.041409	1	0.13896	1	0.16933	1	0.20953	1	0.46806	1	0.45915	1	0.55959	1	0.26093	1
12q loss	0 (0%)	344	0.31533	1	0.073031	1	0.76577	1	0.67098	1	0.20101	1	0.30816	1	0.60463	1	0.12078	1
13q loss	0 (0%)	280	2.38e-07	0.000145	9.4774e-10	5.9e-07	0.31542	1	0.43888	1	0.028593	1	2.3757e-05	0.0142	0.0075579	1	0.2029	1
14q loss	0 (0%)	334	0.40863	1	0.041537	1	0.14112	1	0.63963	1	0.010806	1	0.015397	1	0.0096879	1	0.32661	1
15q loss	0 (0%)	325	0.0038668	1	0.17291	1	0.39892	1	0.31817	1	0.4575	1	0.24642	1	0.27174	1	0.20206	1
16p loss	0 (0%)	340	0.070625	1	0.029407	1	0.10935	1	0.29441	1	0.041388	1	0.013987	1	0.091508	1	0.15316	1
16q loss	0 (0%)	323	0.0070367	1	4.1892e-05	0.025	0.034717	1	0.0054587	1	4.7208e-07	0.000287	1.3363e-08	8.24e-06	0.00049763	0.282	0.0076316	1
17p loss	0 (0%)	303	0.021079	1	1.2742e-05	0.00765	0.74831	1	0.56729	1	0.63743	1	0.021813	1	0.17763	1	0.69904	1
17q loss	0 (0%)	346	0.044614	1	0.023184	1	0.43841	1	0.40247	1	0.45621	1	0.86093	1	0.45158	1	1	1
18p loss	0 (0%)	322	0.031346	1	0.024259	1	0.8461	1	0.34382	1	0.57825	1	0.74676	1	0.26442	1	0.39088	1
18q loss	0 (0%)	259	1.918e-09	1.19e-06	6.7269e-08	4.13e-05	0.38631	1	0.19722	1	0.019171	1	0.5121	1	0.011144	1	0.21145	1
19p loss	0 (0%)	325	0.012987	1	0.11275	1	0.73735	1	0.94066	1	0.11829	1	0.41646	1	0.87673	1	0.0063556	1
19q loss	0 (0%)	331	0.0035027	1	0.18043	1	0.13134	1	0.29347	1	0.69431	1	0.83272	1	0.24944	1	0.24429	1
20p loss	0 (0%)	330	0.028261	1	0.31927	1	0.30236	1	0.81443	1	0.22385	1	0.090392	1	0.55062	1	0.26726	1
20q loss	0 (0%)	342	0.022158	1	0.21225	1	0.65112	1	0.77935	1	0.035931	1	0.046799	1	0.85325	1	0.81614	1
21q loss	0 (0%)	289	2.1597e-06	0.0013	0.010851	1	0.94232	1	0.20446	1	0.8923	1	0.51213	1	0.68033	1	0.72163	1
22q loss	0 (0%)	326	0.0033051	1	0.030467	1	1	1	0.77877	1	0.39131	1	0.77198	1	0.0072472	1	0.80119	1
Xq loss	0 (0%)	344	0.06711	1	0.076335	1	0.9034	1	0.13033	1	0.80412	1	0.80209	1	1	1	0.78037	1
