
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/397498/HNSC-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/HNSC-TP/3144284/1.GDAC_mergedClustering.Finished/HNSC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=358, in cluster file=306, common to both=306
[1] "Reduce the number of clustering variables from 96 to 94."
[1]  94 306
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              57              249 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              57              249 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              65              241 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              65              241 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
            10            296 
  HRAS MUTATED HRAS WILD-TYPE 
            10            296 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              17              289 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              17              289 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              64              242 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              64              242 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           214             92 
  TP53 MUTATED TP53 WILD-TYPE 
           214             92 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             27             279 
  CASP8 MUTATED CASP8 WILD-TYPE 
             27             279 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
            72            234 
  FAT1 MUTATED FAT1 WILD-TYPE 
            72            234 
[1] "JUB MUTATION ANALYSIS"
[1] 3
  JUB MUTATED JUB WILD-TYPE 
           18           288 
  JUB MUTATED JUB WILD-TYPE 
           18           288 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            56            250 
  MLL2 MUTATED MLL2 WILD-TYPE 
            56            250 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             291 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             291 
[1] "NSD1 MUTATION ANALYSIS"
[1] 3
  NSD1 MUTATED NSD1 WILD-TYPE 
            33            273 
  NSD1 MUTATED NSD1 WILD-TYPE 
            33            273 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
             11             295 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
             11             295 
[1] "POTEC MUTATION ANALYSIS"
[1] 3
  POTEC MUTATED POTEC WILD-TYPE 
             15             291 
  POTEC MUTATED POTEC WILD-TYPE 
             15             291 
[1] "ZNF750 MUTATION ANALYSIS"
[1] 3
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              13              293 
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              13              293 
[1] "EP300 MUTATION ANALYSIS"
[1] 3
  EP300 MUTATED EP300 WILD-TYPE 
             25             281 
  EP300 MUTATED EP300 WILD-TYPE 
             25             281 
[1] "POM121L12 MUTATION ANALYSIS"
[1] 3
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                 14                 292 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                 14                 292 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             4            302 
  RHOA MUTATED RHOA WILD-TYPE 
             4            302 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            7           299 
  B2M MUTATED B2M WILD-TYPE 
            7           299 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            297 
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            297 
[1] "ZNF804B MUTATION ANALYSIS"
[1] 3
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               21               285 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               21               285 
[1] "KCNT2 MUTATION ANALYSIS"
[1] 3
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             289 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             289 
[1] "RASA1 MUTATION ANALYSIS"
[1] 3
  RASA1 MUTATED RASA1 WILD-TYPE 
             14             292 
  RASA1 MUTATED RASA1 WILD-TYPE 
             14             292 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              9             297 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              9             297 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             23             283 
  CDH10 MUTATED CDH10 WILD-TYPE 
             23             283 
[1] "CNTNAP5 MUTATION ANALYSIS"
[1] 3
  CNTNAP5 MUTATED CNTNAP5 WILD-TYPE 
               15               291 
  CNTNAP5 MUTATED CNTNAP5 WILD-TYPE 
               15               291 
[1] "POTEG MUTATION ANALYSIS"
[1] 3
  POTEG MUTATED POTEG WILD-TYPE 
             10             296 
  POTEG MUTATED POTEG WILD-TYPE 
             10             296 
[1] "ZNF99 MUTATION ANALYSIS"
[1] 3
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             22             284 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             22             284 
[1] "OR2T12 MUTATION ANALYSIS"
[1] 3
  OR2T12 MUTATED OR2T12 WILD-TYPE 
              11              295 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
              11              295 
[1] "REG1A MUTATION ANALYSIS"
[1] 3
  REG1A MUTATED REG1A WILD-TYPE 
              8             298 
  REG1A MUTATED REG1A WILD-TYPE 
              8             298 
[1] "PABPC5 MUTATION ANALYSIS"
[1] 3
  PABPC5 MUTATED PABPC5 WILD-TYPE 
               9              297 
  PABPC5 MUTATED PABPC5 WILD-TYPE 
               9              297 
[1] "IL32 MUTATION ANALYSIS"
[1] 3
  IL32 MUTATED IL32 WILD-TYPE 
             4            302 
  IL32 MUTATED IL32 WILD-TYPE 
             4            302 
[1] "PRAMEF11 MUTATION ANALYSIS"
[1] 3
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                10                296 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                10                296 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             14             292 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             14             292 
[1] "FCRL4 MUTATION ANALYSIS"
[1] 3
  FCRL4 MUTATED FCRL4 WILD-TYPE 
             13             293 
  FCRL4 MUTATED FCRL4 WILD-TYPE 
             13             293 
[1] "LCP1 MUTATION ANALYSIS"
[1] 3
  LCP1 MUTATED LCP1 WILD-TYPE 
            12            294 
  LCP1 MUTATED LCP1 WILD-TYPE 
            12            294 
[1] "LRFN5 MUTATION ANALYSIS"
[1] 3
  LRFN5 MUTATED LRFN5 WILD-TYPE 
             13             293 
  LRFN5 MUTATED LRFN5 WILD-TYPE 
             13             293 
[1] "MAPK1 MUTATION ANALYSIS"
[1] 3
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              4             302 
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              4             302 
[1] "PEG3 MUTATION ANALYSIS"
[1] 3
  PEG3 MUTATED PEG3 WILD-TYPE 
            23            283 
  PEG3 MUTATED PEG3 WILD-TYPE 
            23            283 
[1] "PRSS1 MUTATION ANALYSIS"
[1] 3
  PRSS1 MUTATED PRSS1 WILD-TYPE 
              8             298 
  PRSS1 MUTATED PRSS1 WILD-TYPE 
              8             298 
[1] "DOK6 MUTATION ANALYSIS"
[1] 3
  DOK6 MUTATED DOK6 WILD-TYPE 
             8            298 
  DOK6 MUTATED DOK6 WILD-TYPE 
             8            298 
[1] "GABRB3 MUTATION ANALYSIS"
[1] 3
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              295 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              295 
[1] "STEAP4 MUTATION ANALYSIS"
[1] 3
  STEAP4 MUTATED STEAP4 WILD-TYPE 
              10              296 
  STEAP4 MUTATED STEAP4 WILD-TYPE 
              10              296 
[1] "ASXL3 MUTATION ANALYSIS"
[1] 3
  ASXL3 MUTATED ASXL3 WILD-TYPE 
             21             285 
  ASXL3 MUTATED ASXL3 WILD-TYPE 
             21             285 
[1] "NTM MUTATION ANALYSIS"
[1] 3
  NTM MUTATED NTM WILD-TYPE 
            7           299 
  NTM MUTATED NTM WILD-TYPE 
            7           299 
[1] "FAM155A MUTATION ANALYSIS"
[1] 3
  FAM155A MUTATED FAM155A WILD-TYPE 
               11               295 
  FAM155A MUTATED FAM155A WILD-TYPE 
               11               295 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              9             297 
  HLA-A MUTATED HLA-A WILD-TYPE 
              9             297 
[1] "KRTAP1-5 MUTATION ANALYSIS"
[1] 3
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 3                303 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 3                303 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            11            295 
  CTCF MUTATED CTCF WILD-TYPE 
            11            295 
[1] "BRWD3 MUTATION ANALYSIS"
[1] 3
  BRWD3 MUTATED BRWD3 WILD-TYPE 
             16             290 
  BRWD3 MUTATED BRWD3 WILD-TYPE 
             16             290 
[1] "CNPY3 MUTATION ANALYSIS"
[1] 3
  CNPY3 MUTATED CNPY3 WILD-TYPE 
              3             303 
  CNPY3 MUTATED CNPY3 WILD-TYPE 
              3             303 
[1] "FAM101A MUTATION ANALYSIS"
[1] 3
  FAM101A MUTATED FAM101A WILD-TYPE 
                4               302 
  FAM101A MUTATED FAM101A WILD-TYPE 
                4               302 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
              9             297 
  HLA-B MUTATED HLA-B WILD-TYPE 
              9             297 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             9            297 
  PSG8 MUTATED PSG8 WILD-TYPE 
             9            297 
[1] "OR56A1 MUTATION ANALYSIS"
[1] 3
  OR56A1 MUTATED OR56A1 WILD-TYPE 
               8              298 
  OR56A1 MUTATED OR56A1 WILD-TYPE 
               8              298 
[1] "OR2M2 MUTATION ANALYSIS"
[1] 3
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              8             298 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              8             298 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              8             298 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              8             298 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               7              299 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               7              299 
[1] "EYA1 MUTATION ANALYSIS"
[1] 3
  EYA1 MUTATED EYA1 WILD-TYPE 
            10            296 
  EYA1 MUTATED EYA1 WILD-TYPE 
            10            296 
[1] "LINGO2 MUTATION ANALYSIS"
[1] 3
  LINGO2 MUTATED LINGO2 WILD-TYPE 
              10              296 
  LINGO2 MUTATED LINGO2 WILD-TYPE 
              10              296 
[1] "SEMA5A MUTATION ANALYSIS"
[1] 3
  SEMA5A MUTATED SEMA5A WILD-TYPE 
              19              287 
  SEMA5A MUTATED SEMA5A WILD-TYPE 
              19              287 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              10              296 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              10              296 
[1] "PLSCR1 MUTATION ANALYSIS"
[1] 3
  PLSCR1 MUTATED PLSCR1 WILD-TYPE 
               5              301 
  PLSCR1 MUTATED PLSCR1 WILD-TYPE 
               5              301 
[1] "LIN28B MUTATION ANALYSIS"
[1] 3
  LIN28B MUTATED LIN28B WILD-TYPE 
               6              300 
  LIN28B MUTATED LIN28B WILD-TYPE 
               6              300 
[1] "AGTR1 MUTATION ANALYSIS"
[1] 3
  AGTR1 MUTATED AGTR1 WILD-TYPE 
              8             298 
  AGTR1 MUTATED AGTR1 WILD-TYPE 
              8             298 
[1] "C6 MUTATION ANALYSIS"
[1] 3
  C6 MUTATED C6 WILD-TYPE 
          12          294 
  C6 MUTATED C6 WILD-TYPE 
          12          294 
[1] "MS4A14 MUTATION ANALYSIS"
[1] 3
  MS4A14 MUTATED MS4A14 WILD-TYPE 
               9              297 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
               9              297 
[1] "HIST1H4E MUTATION ANALYSIS"
[1] 3
  HIST1H4E MUTATED HIST1H4E WILD-TYPE 
                 5                301 
  HIST1H4E MUTATED HIST1H4E WILD-TYPE 
                 5                301 
[1] "LBP MUTATION ANALYSIS"
[1] 3
  LBP MUTATED LBP WILD-TYPE 
            7           299 
  LBP MUTATED LBP WILD-TYPE 
            7           299 
[1] "RGS17 MUTATION ANALYSIS"
[1] 3
  RGS17 MUTATED RGS17 WILD-TYPE 
              5             301 
  RGS17 MUTATED RGS17 WILD-TYPE 
              5             301 
[1] "LILRB1 MUTATION ANALYSIS"
[1] 3
  LILRB1 MUTATED LILRB1 WILD-TYPE 
              12              294 
  LILRB1 MUTATED LILRB1 WILD-TYPE 
              12              294 
[1] "MAGEL2 MUTATION ANALYSIS"
[1] 3
  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
              12              294 
  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
              12              294 
[1] "OR8D4 MUTATION ANALYSIS"
[1] 3
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              6             300 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              6             300 
[1] "HIST1H1B MUTATION ANALYSIS"
[1] 3
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 7                299 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 7                299 
[1] "C3ORF59 MUTATION ANALYSIS"
[1] 3
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                8               298 
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                8               298 
[1] "C8ORF34 MUTATION ANALYSIS"
[1] 3
  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
                7               299 
  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
                7               299 
[1] "OR8J1 MUTATION ANALYSIS"
[1] 3
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              9             297 
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              9             297 
[1] "RAB32 MUTATION ANALYSIS"
[1] 3
  RAB32 MUTATED RAB32 WILD-TYPE 
              3             303 
  RAB32 MUTATED RAB32 WILD-TYPE 
              3             303 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               298 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               298 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               21               285 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               21               285 
[1] "SLITRK4 MUTATION ANALYSIS"
[1] 3
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               12               294 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               12               294 
[1] "FRG2B MUTATION ANALYSIS"
[1] 3
  FRG2B MUTATED FRG2B WILD-TYPE 
              6             300 
  FRG2B MUTATED FRG2B WILD-TYPE 
              6             300 
[1] "OR2L13 MUTATION ANALYSIS"
[1] 3
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               7              299 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               7              299 
[1] "CUL3 MUTATION ANALYSIS"
[1] 3
  CUL3 MUTATED CUL3 WILD-TYPE 
            10            296 
  CUL3 MUTATED CUL3 WILD-TYPE 
            10            296 
[1] "FOSL2 MUTATION ANALYSIS"
[1] 3
  FOSL2 MUTATED FOSL2 WILD-TYPE 
              7             299 
  FOSL2 MUTATED FOSL2 WILD-TYPE 
              7             299 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              12              294 
  GPR158 MUTATED GPR158 WILD-TYPE 
              12              294 
[1] "PTPRT MUTATION ANALYSIS"
[1] 3
  PTPRT MUTATED PTPRT WILD-TYPE 
             19             287 
  PTPRT MUTATED PTPRT WILD-TYPE 
             19             287 
[1] "POTEH MUTATION ANALYSIS"
[1] 3
  POTEH MUTATED POTEH WILD-TYPE 
              7             299 
  POTEH MUTATED POTEH WILD-TYPE 
              7             299 
[1] "OR5D13 MUTATION ANALYSIS"
[1] 3
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               7              299 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               7              299 
[1] "PRB1 MUTATION ANALYSIS"
[1] 3
  PRB1 MUTATED PRB1 WILD-TYPE 
             7            299 
  PRB1 MUTATED PRB1 WILD-TYPE 
             7            299 
[1] "NEUROD6 MUTATION ANALYSIS"
[1] 3
  NEUROD6 MUTATED NEUROD6 WILD-TYPE 
                7               299 
  NEUROD6 MUTATED NEUROD6 WILD-TYPE 
                7               299 
[1] "DPP10 MUTATION ANALYSIS"
[1] 3
  DPP10 MUTATED DPP10 WILD-TYPE 
             16             290 
  DPP10 MUTATED DPP10 WILD-TYPE 
             16             290 
[1] "DPPA4 MUTATION ANALYSIS"
[1] 3
  DPPA4 MUTATED DPPA4 WILD-TYPE 
              7             299 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
              7             299 
[1] "EPDR1 MUTATION ANALYSIS"
[1] 3
  EPDR1 MUTATED EPDR1 WILD-TYPE 
              6             300 
  EPDR1 MUTATED EPDR1 WILD-TYPE 
              6             300 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 306 columns.

Variable 1:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 306 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=8, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = NOTCH1 MUTATION ANALYSIS
D1V1, multiclass
D1V2, multiclass
D1V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             20               53
  CLUS_2              6               46
  CLUS_3              1               26
  CLUS_4             12               44
D1V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             18               94
  CLUS_2             19               59
  CLUS_3              2               16
D1V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             10              107
  CLUS_2             22               71
  CLUS_3             25               64
D1V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             20               77
  CLUS_2             29               55
  CLUS_3              8              110
D1V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             26               63
  CLUS_2              9              113
  CLUS_3             21               72
D1V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             22               90
  CLUS_2              3                8
  CLUS_3             31              150

Clustering(2) Variable = CDKN2A MUTATION ANALYSIS
D2V1, multiclass
D2V2, multiclass
D2V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             21               52
  CLUS_2              6               46
  CLUS_3             10               17
  CLUS_4             16               40
D2V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             26               86
  CLUS_2             23               55
  CLUS_3              4               14
D2V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             21               96
  CLUS_2             18               75
  CLUS_3             25               64
D2V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             21               76
  CLUS_2             23               61
  CLUS_3             20               98
D2V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             19               70
  CLUS_2             21              101
  CLUS_3             24               69
D2V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             27               85
  CLUS_2              4                7
  CLUS_3             33              148

Clustering(3) Variable = HRAS MUTATION ANALYSIS
D3V1, multiclass
D3V2, multiclass
D3V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             51
  CLUS_3            3             24
  CLUS_4            1             55
D3V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             74
  CLUS_3            0             18
D3V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            116
  CLUS_2            1             92
  CLUS_3            8             81
D3V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             96
  CLUS_2            8             76
  CLUS_3            1            117
D3V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            6             83
  CLUS_2            3            119
  CLUS_3            1             92
D3V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            111
  CLUS_2            0             11
  CLUS_3            9            172

Clustering(4) Variable = NFE2L2 MUTATION ANALYSIS
D4V1, multiclass
D4V2, multiclass
D4V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              6               46
  CLUS_3              3               24
  CLUS_4              1               55
D4V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              8              104
  CLUS_2              6               72
  CLUS_3              0               18
D4V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              110
  CLUS_2              5               88
  CLUS_3              5               84
D4V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              5               92
  CLUS_2              7               77
  CLUS_3              5              113
D4V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2             10              112
  CLUS_3              5               88
D4V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              2                9
  CLUS_3             10              171

Clustering(5) Variable = PIK3CA MUTATION ANALYSIS
D5V1, multiclass
D5V2, multiclass
D5V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             16               57
  CLUS_2              7               45
  CLUS_3              9               18
  CLUS_4              7               49
D5V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             20               92
  CLUS_2             16               62
  CLUS_3              3               15
D5V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             29               88
  CLUS_2             13               80
  CLUS_3             21               68
D5V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             16               81
  CLUS_2             20               64
  CLUS_3             27               91
D5V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             22               67
  CLUS_2             31               91
  CLUS_3             11               82
D5V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             17               95
  CLUS_2              1               10
  CLUS_3             46              135

Clustering(6) Variable = TP53 MUTATION ANALYSIS
D6V1, multiclass
D6V2, multiclass
D6V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           59             14
  CLUS_2           34             18
  CLUS_3           20              7
  CLUS_4           47              9
D6V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           84             28
  CLUS_2           62             16
  CLUS_3           14              4
D6V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           74             43
  CLUS_2           76             17
  CLUS_3           62             27
D6V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           80             17
  CLUS_2           61             23
  CLUS_3           71             47
D6V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           59             30
  CLUS_2           80             42
  CLUS_3           74             19
D6V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           92             20
  CLUS_2            9              2
  CLUS_3          112             69

Clustering(7) Variable = CASP8 MUTATION ANALYSIS
D7V1, multiclass
D7V2, multiclass
D7V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             9              64
  CLUS_2             4              48
  CLUS_3             4              23
  CLUS_4             5              51
D7V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            11             101
  CLUS_2            10              68
  CLUS_3             1              17
D7V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1             116
  CLUS_2             5              88
  CLUS_3            19              70
D7V6, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             6              91
  CLUS_2            18              66
  CLUS_3             1             117
D7V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            10              79
  CLUS_2             7             115
  CLUS_3             9              84
D7V8, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             3               8
  CLUS_3            15             166

Clustering(8) Variable = FAT1 MUTATION ANALYSIS
D8V1, multiclass
D8V2, multiclass
D8V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           16             57
  CLUS_2           14             38
  CLUS_3            5             22
  CLUS_4           15             41
D8V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           28             84
  CLUS_2           16             62
  CLUS_3            6             12
D8V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           21             96
  CLUS_2           27             66
  CLUS_3           22             67
D8V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           26             71
  CLUS_2           22             62
  CLUS_3           22             96
D8V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           22             67
  CLUS_2           26             96
  CLUS_3           23             70
D8V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           30             82
  CLUS_2            3              8
  CLUS_3           38            143

Clustering(9) Variable = JUB MUTATION ANALYSIS
D9V1, multiclass
D9V2, multiclass
D9V3, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7            66
  CLUS_2           4            48
  CLUS_3           1            26
  CLUS_4           0            56
D9V4, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           3           109
  CLUS_2           8            70
  CLUS_3           1            17
D9V5, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           5           112
  CLUS_2           4            89
  CLUS_3           8            81
D9V6, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           4            93
  CLUS_2           8            76
  CLUS_3           5           113
D9V7, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7            82
  CLUS_2           8           114
  CLUS_3           3            90
D9V8, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7           105
  CLUS_2           0            11
  CLUS_3          11           170

Clustering(10) Variable = MLL2 MUTATION ANALYSIS
D10V1, multiclass
D10V2, multiclass
D10V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           16             57
  CLUS_2            9             43
  CLUS_3            3             24
  CLUS_4           10             46
D10V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           19             93
  CLUS_2           14             64
  CLUS_3            5             13
D10V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           29             88
  CLUS_2           11             82
  CLUS_3           15             74
D10V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            9             88
  CLUS_2           16             68
  CLUS_3           30             88
D10V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           19             70
  CLUS_2           26             96
  CLUS_3           10             83
D10V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           12            100
  CLUS_2            0             11
  CLUS_3           43            138

Clustering(11) Variable = FBXW7 MUTATION ANALYSIS
D11V1, multiclass
D11V2, multiclass
D11V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             6              46
  CLUS_3             1              26
  CLUS_4             3              53
D11V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             2              76
  CLUS_3             1              17
D11V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             6             111
  CLUS_2             3              90
  CLUS_3             4              85
D11V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             3              94
  CLUS_2             3              81
  CLUS_3             7             111
D11V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             6             116
  CLUS_3             4              89
D11V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             0              11
  CLUS_3            10             171

Clustering(12) Variable = NSD1 MUTATION ANALYSIS
D12V1, multiclass
D12V2, multiclass
D12V3, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            9             64
  CLUS_2            7             45
  CLUS_3            3             24
  CLUS_4            2             54
D12V4, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           10            102
  CLUS_2            9             69
  CLUS_3            2             16
D12V5, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           23             94
  CLUS_2            3             90
  CLUS_3            7             82
D12V6, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            3             94
  CLUS_2            4             80
  CLUS_3           26             92
D12V7, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            9             80
  CLUS_2           20            102
  CLUS_3            4             89
D12V8, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            1             10
  CLUS_3           26            155

Clustering(13) Variable = BAGE2 MUTATION ANALYSIS
D13V1, multiclass
D13V2, multiclass
D13V3, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             6              67
  CLUS_2             3              49
  CLUS_3             1              26
  CLUS_4             1              55
D13V4, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              74
  CLUS_3             3              15
D13V5, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             6             111
  CLUS_2             1              92
  CLUS_3             4              85
D13V6, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             2              82
  CLUS_3             7             111
D13V7, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             115
  CLUS_3             1              92
D13V8, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             0              11
  CLUS_3            10             171

Clustering(14) Variable = POTEC MUTATION ANALYSIS
D14V1, multiclass
D14V2, multiclass
D14V3, multiclass
        clus
vv       POTEC MUTATED POTEC WILD-TYPE
  CLUS_1             5              68
  CLUS_2             3              49
  CLUS_3             2              25
  CLUS_4             2              54
D14V4, multiclass
        clus
vv       POTEC MUTATED POTEC WILD-TYPE
  CLUS_1             7             105
  CLUS_2             4              74
  CLUS_3             1              17
D14V5, multiclass
        clus
vv       POTEC MUTATED POTEC WILD-TYPE
  CLUS_1             9             108
  CLUS_2             2              91
  CLUS_3             3              86
D14V6, multiclass
        clus
vv       POTEC MUTATED POTEC WILD-TYPE
  CLUS_1             2              95
  CLUS_2             4              80
  CLUS_3             8             110
D14V7, multiclass
        clus
vv       POTEC MUTATED POTEC WILD-TYPE
  CLUS_1             4              85
  CLUS_2             8             114
  CLUS_3             3              90
D14V8, multiclass
        clus
vv       POTEC MUTATED POTEC WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              10
  CLUS_3            11             170

Clustering(15) Variable = ZNF750 MUTATION ANALYSIS
D15V1, multiclass
D15V2, multiclass
D15V3, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              2               50
  CLUS_3              0               27
  CLUS_4              2               54
D15V4, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              1               77
  CLUS_3              1               17
D15V5, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              8              109
  CLUS_2              3               90
  CLUS_3              1               88
D15V6, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3               94
  CLUS_2              1               83
  CLUS_3              8              110
D15V7, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              7              115
  CLUS_3              3               90
D15V8, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              0               11
  CLUS_3              8              173

Clustering(16) Variable = EP300 MUTATION ANALYSIS
D16V1, multiclass
D16V2, multiclass
D16V3, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             7              66
  CLUS_2             3              49
  CLUS_3             1              26
  CLUS_4             3              53
D16V4, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             8              70
  CLUS_3             0              18
D16V5, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             5             112
  CLUS_2             5              88
  CLUS_3            14              75
D16V6, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             4              93
  CLUS_2            14              70
  CLUS_3             6             112
D16V7, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            10              79
  CLUS_2             9             113
  CLUS_3             5              88
D16V8, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             0              11
  CLUS_3            18             163

Clustering(17) Variable = POM121L12 MUTATION ANALYSIS
D17V1, multiclass
D17V2, multiclass
D17V3, multiclass
        clus
vv       POM121L12 MUTATED POM121L12 WILD-TYPE
  CLUS_1                 4                  69
  CLUS_2                 4                  48
  CLUS_3                 0                  27
  CLUS_4                 0                  56
D17V4, multiclass
        clus
vv       POM121L12 MUTATED POM121L12 WILD-TYPE
  CLUS_1                 2                 110
  CLUS_2                 5                  73
  CLUS_3                 1                  17
D17V5, multiclass
        clus
vv       POM121L12 MUTATED POM121L12 WILD-TYPE
  CLUS_1                 7                 110
  CLUS_2                 3                  90
  CLUS_3                 4                  85
D17V6, multiclass
        clus
vv       POM121L12 MUTATED POM121L12 WILD-TYPE
  CLUS_1                 3                  94
  CLUS_2                 4                  80
  CLUS_3                 7                 111
D17V7, multiclass
        clus
vv       POM121L12 MUTATED POM121L12 WILD-TYPE
  CLUS_1                 3                  86
  CLUS_2                 8                 114
  CLUS_3                 3                  90
D17V8, multiclass
        clus
vv       POM121L12 MUTATED POM121L12 WILD-TYPE
  CLUS_1                 3                 109
  CLUS_2                 0                  11
  CLUS_3                11                 170

Clustering(18) Variable = RHOA MUTATION ANALYSIS
D18V1, multiclass
D18V2, multiclass
D18V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             73
  CLUS_2            1             51
  CLUS_3            0             27
  CLUS_4            2             54
D18V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            109
  CLUS_2            0             78
  CLUS_3            0             18
D18V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0            117
  CLUS_2            2             91
  CLUS_3            2             87
D18V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             94
  CLUS_2            1             83
  CLUS_3            0            118
D18V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             87
  CLUS_2            0            122
  CLUS_3            2             91
D18V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            109
  CLUS_2            0             11
  CLUS_3            1            180

Clustering(19) Variable = B2M MUTATION ANALYSIS
D19V1, multiclass
D19V2, multiclass
D19V3, multiclass
[1] "Remove cluster labels:" "B2M MUTATED"           
clus
  B2M MUTATED B2M WILD-TYPE 
            1           207 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BB-4217    TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4728    TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4731    TCGA-CN-4733 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4734    TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4739    TCGA-CN-4740    TCGA-CN-4741    TCGA-CN-4742    TCGA-CN-5355 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5356    TCGA-CN-5358    TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5363    TCGA-CN-5364    TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5369    TCGA-CN-5370    TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6011    TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6018    TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6023    TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6994    TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5323    TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5329    TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6218    TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6224    TCGA-CQ-6225    TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-7065    TCGA-CQ-7068    TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5434    TCGA-CV-5436    TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5442    TCGA-CV-5443    TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5971    TCGA-CV-5973    TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5979    TCGA-CV-6003    TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6933    TCGA-CV-6934    TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6938    TCGA-CV-6939    TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6943    TCGA-CV-6945    TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6952    TCGA-CV-6953    TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6959    TCGA-CV-6960    TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7090    TCGA-CV-7091    TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7100 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7101    TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7178    TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7238    TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7248    TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7255    TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7410    TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7416    TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7424    TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7432    TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7438    TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6515    TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6825    TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IQ-7630    TCGA-IQ-7632 
"B2M WILD-TYPE" "B2M WILD-TYPE" 
D19V4, multiclass
[1] "Remove cluster labels:" "B2M MUTATED"           
clus
  B2M MUTATED B2M WILD-TYPE 
            1           207 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BB-4217    TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4728    TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4731    TCGA-CN-4733 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4734    TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4739    TCGA-CN-4740    TCGA-CN-4741    TCGA-CN-4742    TCGA-CN-5355 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5356    TCGA-CN-5358    TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5363    TCGA-CN-5364    TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5369    TCGA-CN-5370    TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6011    TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6018    TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6023    TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6994    TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5323    TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5329    TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6218    TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6224    TCGA-CQ-6225    TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-7065    TCGA-CQ-7068    TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5434    TCGA-CV-5436    TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5442    TCGA-CV-5443    TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5971    TCGA-CV-5973    TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5979    TCGA-CV-6003    TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6933    TCGA-CV-6934    TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6938    TCGA-CV-6939    TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6943    TCGA-CV-6945    TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6952    TCGA-CV-6953    TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6959    TCGA-CV-6960    TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7090    TCGA-CV-7091    TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7100 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7101    TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7178    TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7238    TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7248    TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7255    TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7410    TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7416    TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7424    TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7432    TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7438    TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6515    TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6825    TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IQ-7630    TCGA-IQ-7632 
"B2M WILD-TYPE" "B2M WILD-TYPE" 
D19V5, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           4           113
  CLUS_2           1            92
  CLUS_3           1            88
D19V6, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            96
  CLUS_2           1            83
  CLUS_3           4           114
D19V7, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            89
  CLUS_2           5           117
  CLUS_3           2            91
D19V8, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2           110
  CLUS_2           0            11
  CLUS_3           5           176

Clustering(20) Variable = RAC1 MUTATION ANALYSIS
D20V1, multiclass
D20V2, multiclass
D20V3, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             51
  CLUS_3            0             27
  CLUS_4            1             55
D20V4, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             77
  CLUS_3            1             17
D20V5, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3            114
  CLUS_2            1             92
  CLUS_3            5             84
D20V6, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             96
  CLUS_2            5             79
  CLUS_3            3            115
D20V7, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            116
  CLUS_3            1             92
D20V8, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            0             11
  CLUS_3            8            173

Clustering(21) Variable = ZNF804B MUTATION ANALYSIS
D21V1, multiclass
D21V2, multiclass
D21V3, multiclass
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  CLUS_1               4                69
  CLUS_2               5                47
  CLUS_3               3                24
  CLUS_4               3                53
D21V4, multiclass
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  CLUS_1               9               103
  CLUS_2               4                74
  CLUS_3               2                16
D21V5, multiclass
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  CLUS_1               9               108
  CLUS_2               5                88
  CLUS_3               7                82
D21V6, multiclass
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  CLUS_1               6                91
  CLUS_2               5                79
  CLUS_3              10               108
D21V7, multiclass
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  CLUS_1               7                82
  CLUS_2               8               114
  CLUS_3               6                87
D21V8, multiclass
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  CLUS_1               7               105
  CLUS_2               0                11
  CLUS_3              14               167

Clustering(22) Variable = KCNT2 MUTATION ANALYSIS
D22V1, multiclass
D22V2, multiclass
D22V3, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             4              48
  CLUS_3             2              25
  CLUS_4             2              54
D22V4, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             3              75
  CLUS_3             0              18
D22V5, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             9             108
  CLUS_2             1              92
  CLUS_3             7              82
D22V6, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             5              79
  CLUS_3            10             108
D22V7, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             7              82
  CLUS_2             9             113
  CLUS_3             1              92
D22V8, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              10
  CLUS_3            14             167

Clustering(23) Variable = RASA1 MUTATION ANALYSIS
D23V1, multiclass
D23V2, multiclass
D23V3, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             2              50
  CLUS_3             1              26
  CLUS_4             3              53
D23V4, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              72
  CLUS_3             0              18
D23V5, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4             113
  CLUS_2             7              86
  CLUS_3             3              86
D23V6, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7              90
  CLUS_2             4              80
  CLUS_3             3             115
D23V7, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             3             119
  CLUS_3             6              87
D23V8, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             9             103
  CLUS_2             1              10
  CLUS_3             4             177

Clustering(24) Variable = PRIM2 MUTATION ANALYSIS
D24V1, multiclass
D24V2, multiclass
D24V3, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             1              51
  CLUS_3             1              26
  CLUS_4             1              55
D24V4, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              75
  CLUS_3             0              18
D24V5, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             5             112
  CLUS_2             1              92
  CLUS_3             3              86
D24V6, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              96
  CLUS_2             3              81
  CLUS_3             5             113
D24V7, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             116
  CLUS_3             1              92
D24V8, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              10
  CLUS_3             7             174

Clustering(25) Variable = CDH10 MUTATION ANALYSIS
D25V1, multiclass
D25V2, multiclass
D25V3, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             8              65
  CLUS_2             4              48
  CLUS_3             0              27
  CLUS_4             6              50
D25V4, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             8              70
  CLUS_3             2              16
D25V5, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            14             103
  CLUS_2             6              87
  CLUS_3             3              86
D25V6, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             5              92
  CLUS_2             5              79
  CLUS_3            13             105
D25V7, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             6              83
  CLUS_2            13             109
  CLUS_3             4              89
D25V8, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             7             105
  CLUS_2             0              11
  CLUS_3            16             165

Clustering(26) Variable = CNTNAP5 MUTATION ANALYSIS
D26V1, multiclass
D26V2, multiclass
D26V3, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               4                69
  CLUS_2               3                49
  CLUS_3               0                27
  CLUS_4               1                55
D26V4, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               5               107
  CLUS_2               3                75
  CLUS_3               0                18
D26V5, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               9               108
  CLUS_2               0                93
  CLUS_3               6                83
D26V6, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               1                96
  CLUS_2               4                80
  CLUS_3              10               108
D26V7, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               6                83
  CLUS_2               9               113
  CLUS_3               0                93
D26V8, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               0                11
  CLUS_3              12               169

Clustering(27) Variable = POTEG MUTATION ANALYSIS
D27V1, multiclass
D27V2, multiclass
D27V3, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             0              73
  CLUS_2             2              50
  CLUS_3             1              26
  CLUS_4             1              55
D27V4, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              77
  CLUS_3             0              18
D27V5, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             7             110
  CLUS_2             1              92
  CLUS_3             2              87
D27V6, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             1              96
  CLUS_2             2              82
  CLUS_3             7             111
D27V7, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             117
  CLUS_3             2              91
D27V8, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             8             173

Clustering(28) Variable = ZNF99 MUTATION ANALYSIS
D28V1, multiclass
D28V2, multiclass
D28V3, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             1              51
  CLUS_3             3              24
  CLUS_4             2              54
D28V4, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              72
  CLUS_3             0              18
D28V5, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1            10             107
  CLUS_2             2              91
  CLUS_3            10              79
D28V6, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             2              95
  CLUS_2            11              73
  CLUS_3             9             109
D28V7, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             7              82
  CLUS_2            14             108
  CLUS_3             1              92
D28V8, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3            20             161

Clustering(29) Variable = OR2T12 MUTATION ANALYSIS
D29V1, multiclass
D29V2, multiclass
D29V3, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              2               50
  CLUS_3              2               25
  CLUS_4              1               55
D29V4, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               74
  CLUS_3              0               18
D29V5, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              6              111
  CLUS_2              2               91
  CLUS_3              3               86
D29V6, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              2               95
  CLUS_2              3               81
  CLUS_3              6              112
D29V7, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              6              116
  CLUS_3              2               91
D29V8, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              1               10
  CLUS_3              7              174

Clustering(30) Variable = REG1A MUTATION ANALYSIS
D30V1, multiclass
D30V2, multiclass
D30V3, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             2              71
  CLUS_2             2              50
  CLUS_3             1              26
  CLUS_4             0              56
D30V4, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              77
  CLUS_3             1              17
D30V5, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             6             111
  CLUS_2             0              93
  CLUS_3             2              87
D30V6, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             0              97
  CLUS_2             0              84
  CLUS_3             8             110
D30V7, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             116
  CLUS_3             0              93
D30V8, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              11
  CLUS_3             8             173

Clustering(31) Variable = PABPC5 MUTATION ANALYSIS
D31V1, multiclass
D31V2, multiclass
D31V3, multiclass
        clus
vv       PABPC5 MUTATED PABPC5 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              2               50
  CLUS_3              0               27
  CLUS_4              2               54
D31V4, multiclass
        clus
vv       PABPC5 MUTATED PABPC5 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              1               77
  CLUS_3              0               18
D31V5, multiclass
        clus
vv       PABPC5 MUTATED PABPC5 WILD-TYPE
  CLUS_1              6              111
  CLUS_2              3               90
  CLUS_3              0               89
D31V6, multiclass
        clus
vv       PABPC5 MUTATED PABPC5 WILD-TYPE
  CLUS_1              1               96
  CLUS_2              2               82
  CLUS_3              6              112
D31V7, multiclass
        clus
vv       PABPC5 MUTATED PABPC5 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              116
  CLUS_3              1               92
D31V8, multiclass
        clus
vv       PABPC5 MUTATED PABPC5 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               11
  CLUS_3              6              175

Clustering(32) Variable = IL32 MUTATION ANALYSIS
D32V1, multiclass
D32V2, multiclass
D32V3, multiclass
[1] "Remove cluster labels:" "IL32 MUTATED"          
clus
  IL32 MUTATED IL32 WILD-TYPE 
             2            206 
    TCGA-BA-4074     TCGA-BA-4078     TCGA-BA-5149     TCGA-BA-5151 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-5152     TCGA-BA-5153     TCGA-BA-5555     TCGA-BA-5556 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-5557     TCGA-BA-5559     TCGA-BA-6869     TCGA-BA-6870 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-6871     TCGA-BA-6872     TCGA-BA-6873     TCGA-BB-4217 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4723     TCGA-CN-4725     TCGA-CN-4726     TCGA-CN-4727 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4728     TCGA-CN-4729     TCGA-CN-4730     TCGA-CN-4731 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4733     TCGA-CN-4734     TCGA-CN-4735     TCGA-CN-4736 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4737     TCGA-CN-4738     TCGA-CN-4739     TCGA-CN-4740 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4741     TCGA-CN-4742     TCGA-CN-5355     TCGA-CN-5356 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5358     TCGA-CN-5359     TCGA-CN-5360     TCGA-CN-5361 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5363     TCGA-CN-5364     TCGA-CN-5365     TCGA-CN-5366 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5367     TCGA-CN-5369     TCGA-CN-5370     TCGA-CN-5373 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5374     TCGA-CN-6010     TCGA-CN-6011     TCGA-CN-6012 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6013     TCGA-CN-6016     TCGA-CN-6017     TCGA-CN-6018 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6019     TCGA-CN-6020     TCGA-CN-6021     TCGA-CN-6022 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6023     TCGA-CN-6024     TCGA-CN-6988     TCGA-CN-6989 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6992     TCGA-CN-6994     TCGA-CN-6995     TCGA-CN-6996 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6997     TCGA-CN-6998     TCGA-CQ-5323     TCGA-CQ-5324 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-5325     TCGA-CQ-5326     TCGA-CQ-5327     TCGA-CQ-5329 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-5330     TCGA-CQ-5331     TCGA-CQ-5332     TCGA-CQ-5334 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6218     TCGA-CQ-6219     TCGA-CQ-6220     TCGA-CQ-6221 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6222     TCGA-CQ-6224     TCGA-CQ-6225     TCGA-CQ-6227 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6228     TCGA-CQ-6229     TCGA-CQ-7065     TCGA-CQ-7068 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5430     TCGA-CV-5431     TCGA-CV-5432     TCGA-CV-5434 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5439     TCGA-CV-5440     TCGA-CV-5441     TCGA-CV-5442 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5443     TCGA-CV-5444     TCGA-CV-5966     TCGA-CV-5970 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5971     TCGA-CV-5973     TCGA-CV-5976     TCGA-CV-5977 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5978     TCGA-CV-5979     TCGA-CV-6003     TCGA-CV-6433 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6436     TCGA-CV-6441     TCGA-CV-6933     TCGA-CV-6934 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6935     TCGA-CV-6936     TCGA-CV-6937     TCGA-CV-6938 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6939     TCGA-CV-6940     TCGA-CV-6941     TCGA-CV-6942 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6943     TCGA-CV-6945     TCGA-CV-6948     TCGA-CV-6950 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6951     TCGA-CV-6952     TCGA-CV-6953     TCGA-CV-6954 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6955     TCGA-CV-6956     TCGA-CV-6959     TCGA-CV-6960 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6961     TCGA-CV-6962     TCGA-CV-7089     TCGA-CV-7090 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7091     TCGA-CV-7097     TCGA-CV-7099     TCGA-CV-7100 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7101     TCGA-CV-7102     TCGA-CV-7103     TCGA-CV-7104 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7177     TCGA-CV-7178     TCGA-CV-7180     TCGA-CV-7183 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7235     TCGA-CV-7236     TCGA-CV-7238     TCGA-CV-7242 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7243     TCGA-CV-7245     TCGA-CV-7247     TCGA-CV-7248 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7250     TCGA-CV-7252     TCGA-CV-7253     TCGA-CV-7254 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7255     TCGA-CV-7261     TCGA-CV-7263     TCGA-CV-7406 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7407     TCGA-CV-7410     TCGA-CV-7411     TCGA-CV-7413 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7414     TCGA-CV-7415     TCGA-CV-7416     TCGA-CV-7418 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7421     TCGA-CV-7422     TCGA-CV-7423     TCGA-CV-7424 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7425     TCGA-CV-7427     TCGA-CV-7429     TCGA-CV-7430 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7432     TCGA-CV-7433     TCGA-CV-7434     TCGA-CV-7435 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7437     TCGA-CV-7438     TCGA-CV-7440     TCGA-CX-7085 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CX-7086     TCGA-CX-7219     TCGA-D6-6515     TCGA-D6-6516 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D6-6517     TCGA-D6-6823     TCGA-D6-6824     TCGA-D6-6825 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D6-6826     TCGA-D6-6827     TCGA-DQ-7591     TCGA-DQ-7592 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-IQ-7630     TCGA-IQ-7632 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" 
D32V4, multiclass
[1] "Remove cluster labels:" "IL32 MUTATED"          
clus
  IL32 MUTATED IL32 WILD-TYPE 
             2            206 
    TCGA-BA-4074     TCGA-BA-4078     TCGA-BA-5149     TCGA-BA-5151 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-5152     TCGA-BA-5153     TCGA-BA-5555     TCGA-BA-5556 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-5557     TCGA-BA-5559     TCGA-BA-6869     TCGA-BA-6870 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-6871     TCGA-BA-6872     TCGA-BA-6873     TCGA-BB-4217 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4723     TCGA-CN-4725     TCGA-CN-4726     TCGA-CN-4727 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4728     TCGA-CN-4729     TCGA-CN-4730     TCGA-CN-4731 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4733     TCGA-CN-4734     TCGA-CN-4735     TCGA-CN-4736 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4737     TCGA-CN-4738     TCGA-CN-4739     TCGA-CN-4740 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4741     TCGA-CN-4742     TCGA-CN-5355     TCGA-CN-5356 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5358     TCGA-CN-5359     TCGA-CN-5360     TCGA-CN-5361 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5363     TCGA-CN-5364     TCGA-CN-5365     TCGA-CN-5366 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5367     TCGA-CN-5369     TCGA-CN-5370     TCGA-CN-5373 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5374     TCGA-CN-6010     TCGA-CN-6011     TCGA-CN-6012 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6013     TCGA-CN-6016     TCGA-CN-6017     TCGA-CN-6018 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6019     TCGA-CN-6020     TCGA-CN-6021     TCGA-CN-6022 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6023     TCGA-CN-6024     TCGA-CN-6988     TCGA-CN-6989 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6992     TCGA-CN-6994     TCGA-CN-6995     TCGA-CN-6996 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6997     TCGA-CN-6998     TCGA-CQ-5323     TCGA-CQ-5324 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-5325     TCGA-CQ-5326     TCGA-CQ-5327     TCGA-CQ-5329 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-5330     TCGA-CQ-5331     TCGA-CQ-5332     TCGA-CQ-5334 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6218     TCGA-CQ-6219     TCGA-CQ-6220     TCGA-CQ-6221 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6222     TCGA-CQ-6224     TCGA-CQ-6225     TCGA-CQ-6227 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6228     TCGA-CQ-6229     TCGA-CQ-7065     TCGA-CQ-7068 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5430     TCGA-CV-5431     TCGA-CV-5432     TCGA-CV-5434 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5439     TCGA-CV-5440     TCGA-CV-5441     TCGA-CV-5442 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5443     TCGA-CV-5444     TCGA-CV-5966     TCGA-CV-5970 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5971     TCGA-CV-5973     TCGA-CV-5976     TCGA-CV-5977 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5978     TCGA-CV-5979     TCGA-CV-6003     TCGA-CV-6433 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6436     TCGA-CV-6441     TCGA-CV-6933     TCGA-CV-6934 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6935     TCGA-CV-6936     TCGA-CV-6937     TCGA-CV-6938 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6939     TCGA-CV-6940     TCGA-CV-6941     TCGA-CV-6942 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6943     TCGA-CV-6945     TCGA-CV-6948     TCGA-CV-6950 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6951     TCGA-CV-6952     TCGA-CV-6953     TCGA-CV-6954 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6955     TCGA-CV-6956     TCGA-CV-6959     TCGA-CV-6960 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6961     TCGA-CV-6962     TCGA-CV-7089     TCGA-CV-7090 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7091     TCGA-CV-7097     TCGA-CV-7099     TCGA-CV-7100 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7101     TCGA-CV-7102     TCGA-CV-7103     TCGA-CV-7104 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7177     TCGA-CV-7178     TCGA-CV-7180     TCGA-CV-7183 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7235     TCGA-CV-7236     TCGA-CV-7238     TCGA-CV-7242 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7243     TCGA-CV-7245     TCGA-CV-7247     TCGA-CV-7248 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7250     TCGA-CV-7252     TCGA-CV-7253     TCGA-CV-7254 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7255     TCGA-CV-7261     TCGA-CV-7263     TCGA-CV-7406 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7407     TCGA-CV-7410     TCGA-CV-7411     TCGA-CV-7413 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7414     TCGA-CV-7415     TCGA-CV-7416     TCGA-CV-7418 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7421     TCGA-CV-7422     TCGA-CV-7423     TCGA-CV-7424 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7425     TCGA-CV-7427     TCGA-CV-7429     TCGA-CV-7430 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7432     TCGA-CV-7433     TCGA-CV-7434     TCGA-CV-7435 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7437     TCGA-CV-7438     TCGA-CV-7440     TCGA-CX-7085 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CX-7086     TCGA-CX-7219     TCGA-D6-6515     TCGA-D6-6516 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D6-6517     TCGA-D6-6823     TCGA-D6-6824     TCGA-D6-6825 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D6-6826     TCGA-D6-6827     TCGA-DQ-7591     TCGA-DQ-7592 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-IQ-7630     TCGA-IQ-7632 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" 
D32V5, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            2            115
  CLUS_2            2             91
  CLUS_3            0             89
D32V6, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            1             96
  CLUS_2            1             83
  CLUS_3            2            116
D32V7, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            120
  CLUS_3            2             91
D32V8, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            0             11
  CLUS_3            2            179

Clustering(33) Variable = PRAMEF11 MUTATION ANALYSIS
D33V1, multiclass
D33V2, multiclass
D33V3, multiclass
        clus
vv       PRAMEF11 MUTATED PRAMEF11 WILD-TYPE
  CLUS_1                4                 69
  CLUS_2                2                 50
  CLUS_3                1                 26
  CLUS_4                2                 54
D33V4, multiclass
        clus
vv       PRAMEF11 MUTATED PRAMEF11 WILD-TYPE
  CLUS_1                6                106
  CLUS_2                3                 75
  CLUS_3                0                 18
D33V5, multiclass
        clus
vv       PRAMEF11 MUTATED PRAMEF11 WILD-TYPE
  CLUS_1                5                112
  CLUS_2                2                 91
  CLUS_3                3                 86
D33V6, multiclass
        clus
vv       PRAMEF11 MUTATED PRAMEF11 WILD-TYPE
  CLUS_1                2                 95
  CLUS_2                4                 80
  CLUS_3                4                114
D33V7, multiclass
        clus
vv       PRAMEF11 MUTATED PRAMEF11 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                6                116
  CLUS_3                2                 91
D33V8, multiclass
        clus
vv       PRAMEF11 MUTATED PRAMEF11 WILD-TYPE
  CLUS_1                4                108
  CLUS_2                0                 11
  CLUS_3                6                175

Clustering(34) Variable = EPHA2 MUTATION ANALYSIS
D34V1, multiclass
D34V2, multiclass
D34V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5              68
  CLUS_2             4              48
  CLUS_3             1              26
  CLUS_4             2              54
D34V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             5              73
  CLUS_3             1              17
D34V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3             114
  CLUS_2             4              89
  CLUS_3             5              84
D34V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5              92
  CLUS_2             4              80
  CLUS_3             3             115
D34V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             4             118
  CLUS_3             5              88
D34V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             2               9
  CLUS_3             6             175

Clustering(35) Variable = FCRL4 MUTATION ANALYSIS
D35V1, multiclass
D35V2, multiclass
D35V3, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             4              48
  CLUS_3             1              26
  CLUS_4             2              54
D35V4, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             4              74
  CLUS_3             1              17
D35V5, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             7             110
  CLUS_2             2              91
  CLUS_3             4              85
D35V6, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             2              82
  CLUS_3             9             109
D35V7, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             7             115
  CLUS_3             2              91
D35V8, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             0              11
  CLUS_3             9             172

Clustering(36) Variable = LCP1 MUTATION ANALYSIS
D36V1, multiclass
D36V2, multiclass
D36V3, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            1             51
  CLUS_3            1             26
  CLUS_4            4             52
D36V4, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             75
  CLUS_3            3             15
D36V5, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            4            113
  CLUS_2            4             89
  CLUS_3            4             85
D36V6, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            3             94
  CLUS_2            3             81
  CLUS_3            6            112
D36V7, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            3            119
  CLUS_3            4             89
D36V8, multiclass
        clus
vv       LCP1 MUTATED LCP1 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            0             11
  CLUS_3            7            174

Clustering(37) Variable = LRFN5 MUTATION ANALYSIS
D37V1, multiclass
D37V2, multiclass
D37V3, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             2              50
  CLUS_3             1              26
  CLUS_4             1              55
D37V4, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              74
  CLUS_3             0              18
D37V5, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             8             109
  CLUS_2             3              90
  CLUS_3             2              87
D37V6, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             3              94
  CLUS_2             1              83
  CLUS_3             9             109
D37V7, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             7             115
  CLUS_3             0              93
D37V8, multiclass
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              10
  CLUS_3             8             173

Clustering(38) Variable = MAPK1 MUTATION ANALYSIS
D38V1, multiclass
D38V2, multiclass
D38V3, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              51
  CLUS_3             1              26
  CLUS_4             0              56
D38V4, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              76
  CLUS_3             0              18
D38V5, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1             116
  CLUS_2             1              92
  CLUS_3             2              87
D38V6, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1              96
  CLUS_2             2              82
  CLUS_3             1             117
D38V7, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             121
  CLUS_3             1              92
D38V8, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              10
  CLUS_3             2             179

Clustering(39) Variable = PEG3 MUTATION ANALYSIS
D39V1, multiclass
D39V2, multiclass
D39V3, multiclass
        clus
vv       PEG3 MUTATED PEG3 WILD-TYPE
  CLUS_1            6             67
  CLUS_2            2             50
  CLUS_3            5             22
  CLUS_4            2             54
D39V4, multiclass
        clus
vv       PEG3 MUTATED PEG3 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            7             71
  CLUS_3            3             15
D39V5, multiclass
        clus
vv       PEG3 MUTATED PEG3 WILD-TYPE
  CLUS_1           14            103
  CLUS_2            2             91
  CLUS_3            7             82
D39V6, multiclass
        clus
vv       PEG3 MUTATED PEG3 WILD-TYPE
  CLUS_1            3             94
  CLUS_2            6             78
  CLUS_3           14            104
D39V7, multiclass
        clus
vv       PEG3 MUTATED PEG3 WILD-TYPE
  CLUS_1            5             84
  CLUS_2           14            108
  CLUS_3            4             89
D39V8, multiclass
        clus
vv       PEG3 MUTATED PEG3 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            0             11
  CLUS_3           17            164

Clustering(40) Variable = PRSS1 MUTATION ANALYSIS
D40V1, multiclass
D40V2, multiclass
D40V3, multiclass
        clus
vv       PRSS1 MUTATED PRSS1 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              52
  CLUS_3             2              25
  CLUS_4             0              56
D40V4, multiclass
        clus
vv       PRSS1 MUTATED PRSS1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              76
  CLUS_3             0              18
D40V5, multiclass
        clus
vv       PRSS1 MUTATED PRSS1 WILD-TYPE
  CLUS_1             3             114
  CLUS_2             2              91
  CLUS_3             2              87
D40V6, multiclass
        clus
vv       PRSS1 MUTATED PRSS1 WILD-TYPE
  CLUS_1             3              94
  CLUS_2             2              82
  CLUS_3             2             116
D40V7, multiclass
        clus
vv       PRSS1 MUTATED PRSS1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             119
  CLUS_3             2              91
D40V8, multiclass
        clus
vv       PRSS1 MUTATED PRSS1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              10
  CLUS_3             5             176

Clustering(41) Variable = DOK6 MUTATION ANALYSIS
D41V1, multiclass
D41V2, multiclass
D41V3, multiclass
        clus
vv       DOK6 MUTATED DOK6 WILD-TYPE
  CLUS_1            1             72
  CLUS_2            2             50
  CLUS_3            1             26
  CLUS_4            2             54
D41V4, multiclass
        clus
vv       DOK6 MUTATED DOK6 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            2             76
  CLUS_3            0             18
D41V5, multiclass
        clus
vv       DOK6 MUTATED DOK6 WILD-TYPE
  CLUS_1            3            114
  CLUS_2            2             91
  CLUS_3            2             87
D41V6, multiclass
        clus
vv       DOK6 MUTATED DOK6 WILD-TYPE
  CLUS_1            2             95
  CLUS_2            2             82
  CLUS_3            3            115
D41V7, multiclass
        clus
vv       DOK6 MUTATED DOK6 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            118
  CLUS_3            3             90
D41V8, multiclass
        clus
vv       DOK6 MUTATED DOK6 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            0             11
  CLUS_3            5            176

Clustering(42) Variable = GABRB3 MUTATION ANALYSIS
D42V1, multiclass
D42V2, multiclass
D42V3, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              4               48
  CLUS_3              2               25
  CLUS_4              1               55
D42V4, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              2               76
  CLUS_3              0               18
D42V5, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              6              111
  CLUS_2              1               92
  CLUS_3              4               85
D42V6, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              1               96
  CLUS_2              4               80
  CLUS_3              6              112
D42V7, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              6              116
  CLUS_3              2               91
D42V8, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               10
  CLUS_3              8              173

Clustering(43) Variable = STEAP4 MUTATION ANALYSIS
D43V1, multiclass
D43V2, multiclass
D43V3, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              4               48
  CLUS_3              0               27
  CLUS_4              1               55
D43V4, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               76
  CLUS_3              1               17
D43V5, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              6              111
  CLUS_2              4               89
  CLUS_3              0               89
D43V6, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              4               93
  CLUS_2              0               84
  CLUS_3              6              112
D43V7, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              116
  CLUS_3              4               89
D43V8, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              1               10
  CLUS_3              5              176

Clustering(44) Variable = ASXL3 MUTATION ANALYSIS
D44V1, multiclass
D44V2, multiclass
D44V3, multiclass
        clus
vv       ASXL3 MUTATED ASXL3 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             0              52
  CLUS_3             2              25
  CLUS_4             3              53
D44V4, multiclass
        clus
vv       ASXL3 MUTATED ASXL3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              73
  CLUS_3             1              17
D44V5, multiclass
        clus
vv       ASXL3 MUTATED ASXL3 WILD-TYPE
  CLUS_1             9             108
  CLUS_2             6              87
  CLUS_3             6              83
D44V6, multiclass
        clus
vv       ASXL3 MUTATED ASXL3 WILD-TYPE
  CLUS_1             5              92
  CLUS_2             7              77
  CLUS_3             9             109
D44V7, multiclass
        clus
vv       ASXL3 MUTATED ASXL3 WILD-TYPE
  CLUS_1             5              84
  CLUS_2            10             112
  CLUS_3             4              89
D44V8, multiclass
        clus
vv       ASXL3 MUTATED ASXL3 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             1              10
  CLUS_3            13             168

Clustering(45) Variable = NTM MUTATION ANALYSIS
D45V1, multiclass
D45V2, multiclass
D45V3, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           4            69
  CLUS_2           0            52
  CLUS_3           1            26
  CLUS_4           0            56
D45V4, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           0           112
  CLUS_2           4            74
  CLUS_3           1            17
D45V5, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           4           113
  CLUS_2           0            93
  CLUS_3           3            86
D45V6, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           0            97
  CLUS_2           4            80
  CLUS_3           3           115
D45V7, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           4            85
  CLUS_2           3           119
  CLUS_3           0            93
D45V8, multiclass
        clus
vv       NTM MUTATED NTM WILD-TYPE
  CLUS_1           0           112
  CLUS_2           0            11
  CLUS_3           7           174

Clustering(46) Variable = FAM155A MUTATION ANALYSIS
D46V1, multiclass
D46V2, multiclass
D46V3, multiclass
        clus
vv       FAM155A MUTATED FAM155A WILD-TYPE
  CLUS_1               4                69
  CLUS_2               0                52
  CLUS_3               3                24
  CLUS_4               0                56
D46V4, multiclass
        clus
vv       FAM155A MUTATED FAM155A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                73
  CLUS_3               1                17
D46V5, multiclass
        clus
vv       FAM155A MUTATED FAM155A WILD-TYPE
  CLUS_1               5               112
  CLUS_2               1                92
  CLUS_3               5                84
D46V6, multiclass
        clus
vv       FAM155A MUTATED FAM155A WILD-TYPE
  CLUS_1               1                96
  CLUS_2               5                79
  CLUS_3               5               113
D46V7, multiclass
        clus
vv       FAM155A MUTATED FAM155A WILD-TYPE
  CLUS_1               6                83
  CLUS_2               4               118
  CLUS_3               1                92
D46V8, multiclass
        clus
vv       FAM155A MUTATED FAM155A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                10
  CLUS_3               9               172

Clustering(47) Variable = HLA-A MUTATION ANALYSIS
D47V1, multiclass
D47V2, multiclass
D47V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              51
  CLUS_3             0              27
  CLUS_4             2              54
D47V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              76
  CLUS_3             0              18
D47V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             115
  CLUS_2             1              92
  CLUS_3             6              83
D47V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              95
  CLUS_2             6              78
  CLUS_3             1             117
D47V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             119
  CLUS_3             2              91
D47V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             7             174

Clustering(48) Variable = KRTAP1-5 MUTATION ANALYSIS
D48V1, multiclass
D48V2, multiclass
D48V3, multiclass
D48V4, multiclass
D48V5, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                2                115
  CLUS_2                1                 92
  CLUS_3                0                 89
D48V6, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                0                 97
  CLUS_2                1                 83
  CLUS_3                2                116
D48V7, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                0                122
  CLUS_3                0                 93
D48V8, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                0                 11
  CLUS_3                2                179

Clustering(49) Variable = CTCF MUTATION ANALYSIS
D49V1, multiclass
D49V2, multiclass
D49V3, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             71
  CLUS_2            4             48
  CLUS_3            0             27
  CLUS_4            2             54
D49V4, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            6            106
  CLUS_2            2             76
  CLUS_3            0             18
D49V5, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3            114
  CLUS_2            2             91
  CLUS_3            4             85
D49V6, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             95
  CLUS_2            4             80
  CLUS_3            3            115
D49V7, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4             85
  CLUS_2            4            118
  CLUS_3            3             90
D49V8, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            108
  CLUS_2            1             10
  CLUS_3            6            175

Clustering(50) Variable = BRWD3 MUTATION ANALYSIS
D50V1, multiclass
D50V2, multiclass
D50V3, multiclass
        clus
vv       BRWD3 MUTATED BRWD3 WILD-TYPE
  CLUS_1             6              67
  CLUS_2             1              51
  CLUS_3             1              26
  CLUS_4             3              53
D50V4, multiclass
        clus
vv       BRWD3 MUTATED BRWD3 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             4              74
  CLUS_3             1              17
D50V5, multiclass
        clus
vv       BRWD3 MUTATED BRWD3 WILD-TYPE
  CLUS_1             8             109
  CLUS_2             2              91
  CLUS_3             6              83
D50V6, multiclass
        clus
vv       BRWD3 MUTATED BRWD3 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             7              77
  CLUS_3             7             111
D50V7, multiclass
        clus
vv       BRWD3 MUTATED BRWD3 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             8             114
  CLUS_3             3              90
D50V8, multiclass
        clus
vv       BRWD3 MUTATED BRWD3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             0              11
  CLUS_3            13             168

Clustering(51) Variable = CNPY3 MUTATION ANALYSIS
D51V1, multiclass
D51V2, multiclass
D51V3, multiclass
[1] "Remove cluster labels:" "CNPY3 MUTATED"         
clus
  CNPY3 MUTATED CNPY3 WILD-TYPE 
              2             206 
     TCGA-BA-4074      TCGA-BA-4078      TCGA-BA-5149      TCGA-BA-5151 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-5152      TCGA-BA-5153      TCGA-BA-5555      TCGA-BA-5556 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-5557      TCGA-BA-5559      TCGA-BA-6869      TCGA-BA-6870 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-6871      TCGA-BA-6872      TCGA-BA-6873      TCGA-BB-4217 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4723      TCGA-CN-4725      TCGA-CN-4726      TCGA-CN-4727 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4728      TCGA-CN-4729      TCGA-CN-4730      TCGA-CN-4731 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4733      TCGA-CN-4734      TCGA-CN-4735      TCGA-CN-4736 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4737      TCGA-CN-4738      TCGA-CN-4739      TCGA-CN-4740 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4741      TCGA-CN-4742      TCGA-CN-5355      TCGA-CN-5356 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5358      TCGA-CN-5359      TCGA-CN-5360      TCGA-CN-5361 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5363      TCGA-CN-5364      TCGA-CN-5365      TCGA-CN-5366 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5367      TCGA-CN-5369      TCGA-CN-5370      TCGA-CN-5373 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5374      TCGA-CN-6010      TCGA-CN-6011      TCGA-CN-6012 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6013      TCGA-CN-6016      TCGA-CN-6017      TCGA-CN-6018 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6019      TCGA-CN-6020      TCGA-CN-6021      TCGA-CN-6022 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6023      TCGA-CN-6024      TCGA-CN-6988      TCGA-CN-6989 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6992      TCGA-CN-6994      TCGA-CN-6995      TCGA-CN-6996 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6997      TCGA-CN-6998      TCGA-CQ-5323      TCGA-CQ-5324 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-5325      TCGA-CQ-5326      TCGA-CQ-5327      TCGA-CQ-5329 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-5330      TCGA-CQ-5331      TCGA-CQ-5332      TCGA-CQ-5334 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6218      TCGA-CQ-6219      TCGA-CQ-6220      TCGA-CQ-6221 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6222      TCGA-CQ-6225      TCGA-CQ-6227      TCGA-CQ-6228 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6229      TCGA-CQ-7065      TCGA-CQ-7068      TCGA-CV-5430 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5431      TCGA-CV-5432      TCGA-CV-5434      TCGA-CV-5436 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5439      TCGA-CV-5440      TCGA-CV-5441      TCGA-CV-5442 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5443      TCGA-CV-5444      TCGA-CV-5966      TCGA-CV-5970 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5971      TCGA-CV-5973      TCGA-CV-5976      TCGA-CV-5977 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5978      TCGA-CV-5979      TCGA-CV-6003      TCGA-CV-6433 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6436      TCGA-CV-6441      TCGA-CV-6933      TCGA-CV-6934 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6935      TCGA-CV-6936      TCGA-CV-6937      TCGA-CV-6938 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6939      TCGA-CV-6940      TCGA-CV-6941      TCGA-CV-6942 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6943      TCGA-CV-6945      TCGA-CV-6948      TCGA-CV-6950 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6951      TCGA-CV-6952      TCGA-CV-6953      TCGA-CV-6954 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6955      TCGA-CV-6956      TCGA-CV-6959      TCGA-CV-6960 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6961      TCGA-CV-6962      TCGA-CV-7089      TCGA-CV-7090 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7091      TCGA-CV-7095      TCGA-CV-7097      TCGA-CV-7099 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7100      TCGA-CV-7101      TCGA-CV-7102      TCGA-CV-7103 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7104      TCGA-CV-7177      TCGA-CV-7178      TCGA-CV-7180 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7183      TCGA-CV-7235      TCGA-CV-7236      TCGA-CV-7238 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7242      TCGA-CV-7243      TCGA-CV-7245      TCGA-CV-7247 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7248      TCGA-CV-7250      TCGA-CV-7252      TCGA-CV-7253 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7254      TCGA-CV-7255      TCGA-CV-7263      TCGA-CV-7406 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7407      TCGA-CV-7410      TCGA-CV-7411      TCGA-CV-7413 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7414      TCGA-CV-7415      TCGA-CV-7416      TCGA-CV-7418 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7421      TCGA-CV-7422      TCGA-CV-7423      TCGA-CV-7424 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7425      TCGA-CV-7427      TCGA-CV-7429      TCGA-CV-7430 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7432      TCGA-CV-7433      TCGA-CV-7434      TCGA-CV-7435 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7437      TCGA-CV-7438      TCGA-CV-7440      TCGA-CX-7085 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CX-7086      TCGA-CX-7219      TCGA-D6-6515      TCGA-D6-6516 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-D6-6517      TCGA-D6-6823      TCGA-D6-6824      TCGA-D6-6825 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-D6-6826      TCGA-D6-6827      TCGA-DQ-7591      TCGA-DQ-7592 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-IQ-7630      TCGA-IQ-7632 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
D51V4, multiclass
[1] "Remove cluster labels:" "CNPY3 MUTATED"         
clus
  CNPY3 MUTATED CNPY3 WILD-TYPE 
              2             206 
     TCGA-BA-4074      TCGA-BA-4078      TCGA-BA-5149      TCGA-BA-5151 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-5152      TCGA-BA-5153      TCGA-BA-5555      TCGA-BA-5556 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-5557      TCGA-BA-5559      TCGA-BA-6869      TCGA-BA-6870 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-6871      TCGA-BA-6872      TCGA-BA-6873      TCGA-BB-4217 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4723      TCGA-CN-4725      TCGA-CN-4726      TCGA-CN-4727 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4728      TCGA-CN-4729      TCGA-CN-4730      TCGA-CN-4731 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4733      TCGA-CN-4734      TCGA-CN-4735      TCGA-CN-4736 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4737      TCGA-CN-4738      TCGA-CN-4739      TCGA-CN-4740 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4741      TCGA-CN-4742      TCGA-CN-5355      TCGA-CN-5356 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5358      TCGA-CN-5359      TCGA-CN-5360      TCGA-CN-5361 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5363      TCGA-CN-5364      TCGA-CN-5365      TCGA-CN-5366 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5367      TCGA-CN-5369      TCGA-CN-5370      TCGA-CN-5373 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5374      TCGA-CN-6010      TCGA-CN-6011      TCGA-CN-6012 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6013      TCGA-CN-6016      TCGA-CN-6017      TCGA-CN-6018 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6019      TCGA-CN-6020      TCGA-CN-6021      TCGA-CN-6022 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6023      TCGA-CN-6024      TCGA-CN-6988      TCGA-CN-6989 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6992      TCGA-CN-6994      TCGA-CN-6995      TCGA-CN-6996 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6997      TCGA-CN-6998      TCGA-CQ-5323      TCGA-CQ-5324 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-5325      TCGA-CQ-5326      TCGA-CQ-5327      TCGA-CQ-5329 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-5330      TCGA-CQ-5331      TCGA-CQ-5332      TCGA-CQ-5334 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6218      TCGA-CQ-6219      TCGA-CQ-6220      TCGA-CQ-6221 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6222      TCGA-CQ-6225      TCGA-CQ-6227      TCGA-CQ-6228 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6229      TCGA-CQ-7065      TCGA-CQ-7068      TCGA-CV-5430 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5431      TCGA-CV-5432      TCGA-CV-5434      TCGA-CV-5436 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5439      TCGA-CV-5440      TCGA-CV-5441      TCGA-CV-5442 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5443      TCGA-CV-5444      TCGA-CV-5966      TCGA-CV-5970 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5971      TCGA-CV-5973      TCGA-CV-5976      TCGA-CV-5977 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5978      TCGA-CV-5979      TCGA-CV-6003      TCGA-CV-6433 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6436      TCGA-CV-6441      TCGA-CV-6933      TCGA-CV-6934 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6935      TCGA-CV-6936      TCGA-CV-6937      TCGA-CV-6938 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6939      TCGA-CV-6940      TCGA-CV-6941      TCGA-CV-6942 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6943      TCGA-CV-6945      TCGA-CV-6948      TCGA-CV-6950 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6951      TCGA-CV-6952      TCGA-CV-6953      TCGA-CV-6954 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6955      TCGA-CV-6956      TCGA-CV-6959      TCGA-CV-6960 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6961      TCGA-CV-6962      TCGA-CV-7089      TCGA-CV-7090 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7091      TCGA-CV-7095      TCGA-CV-7097      TCGA-CV-7099 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7100      TCGA-CV-7101      TCGA-CV-7102      TCGA-CV-7103 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7104      TCGA-CV-7177      TCGA-CV-7178      TCGA-CV-7180 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7183      TCGA-CV-7235      TCGA-CV-7236      TCGA-CV-7238 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7242      TCGA-CV-7243      TCGA-CV-7245      TCGA-CV-7247 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7248      TCGA-CV-7250      TCGA-CV-7252      TCGA-CV-7253 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7254      TCGA-CV-7255      TCGA-CV-7263      TCGA-CV-7406 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7407      TCGA-CV-7410      TCGA-CV-7411      TCGA-CV-7413 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7414      TCGA-CV-7415      TCGA-CV-7416      TCGA-CV-7418 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7421      TCGA-CV-7422      TCGA-CV-7423      TCGA-CV-7424 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7425      TCGA-CV-7427      TCGA-CV-7429      TCGA-CV-7430 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7432      TCGA-CV-7433      TCGA-CV-7434      TCGA-CV-7435 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7437      TCGA-CV-7438      TCGA-CV-7440      TCGA-CX-7085 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CX-7086      TCGA-CX-7219      TCGA-D6-6515      TCGA-D6-6516 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-D6-6517      TCGA-D6-6823      TCGA-D6-6824      TCGA-D6-6825 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-D6-6826      TCGA-D6-6827      TCGA-DQ-7591      TCGA-DQ-7592 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-IQ-7630      TCGA-IQ-7632 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
D51V5, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             1             116
  CLUS_2             2              91
  CLUS_3             0              89
D51V6, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             0              84
  CLUS_3             1             117
D51V7, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             121
  CLUS_3             2              91
D51V8, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             1             180

Clustering(52) Variable = FAM101A MUTATION ANALYSIS
D52V1, multiclass
D52V2, multiclass
D52V3, multiclass
[1] "Remove cluster labels:" "FAM101A MUTATED"       
clus
  FAM101A MUTATED FAM101A WILD-TYPE 
                2               206 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5152 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870        TCGA-BA-6871 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217        TCGA-CN-4723 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4734        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5361        TCGA-CN-5363 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-6219        TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6222 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-6229        TCGA-CQ-7065        TCGA-CQ-7068        TCGA-CV-5430 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5436 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7429        TCGA-CV-7430 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434        TCGA-CV-7435 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440        TCGA-CX-7085 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-DQ-7591        TCGA-DQ-7592 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7632 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
D52V4, multiclass
[1] "Remove cluster labels:" "FAM101A MUTATED"       
clus
  FAM101A MUTATED FAM101A WILD-TYPE 
                2               206 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5152 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870        TCGA-BA-6871 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217        TCGA-CN-4723 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4734        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5361        TCGA-CN-5363 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-6219        TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6222 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CQ-6229        TCGA-CQ-7065        TCGA-CQ-7068        TCGA-CV-5430 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5436 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7429        TCGA-CV-7430 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434        TCGA-CV-7435 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440        TCGA-CX-7085 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-DQ-7591        TCGA-DQ-7592 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7632 
"FAM101A WILD-TYPE" "FAM101A WILD-TYPE" 
D52V5, multiclass
        clus
vv       FAM101A MUTATED FAM101A WILD-TYPE
  CLUS_1               1               116
  CLUS_2               1                92
  CLUS_3               2                87
D52V6, multiclass
        clus
vv       FAM101A MUTATED FAM101A WILD-TYPE
  CLUS_1               1                96
  CLUS_2               1                83
  CLUS_3               2               116
D52V7, multiclass
        clus
vv       FAM101A MUTATED FAM101A WILD-TYPE
  CLUS_1               3                86
  CLUS_2               0               122
  CLUS_3               1                92
D52V8, multiclass
        clus
vv       FAM101A MUTATED FAM101A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               0                11
  CLUS_3               3               178

Clustering(53) Variable = HLA-B MUTATION ANALYSIS
D53V1, multiclass
D53V2, multiclass
D53V3, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              70
  CLUS_2             1              51
  CLUS_3             1              26
  CLUS_4             2              54
D53V4, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              74
  CLUS_3             0              18
D53V5, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2             115
  CLUS_2             0              93
  CLUS_3             7              82
D53V6, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1              96
  CLUS_2             7              77
  CLUS_3             1             117
D53V7, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             4              85
  CLUS_2             4             118
  CLUS_3             1              92
D53V8, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1             111
  CLUS_2             0              11
  CLUS_3             8             173

Clustering(54) Variable = PSG8 MUTATION ANALYSIS
D54V1, multiclass
D54V2, multiclass
D54V3, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            2             50
  CLUS_3            1             26
  CLUS_4            2             54
D54V4, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            2             76
  CLUS_3            1             17
D54V5, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            5            112
  CLUS_2            3             90
  CLUS_3            1             88
D54V6, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            3             94
  CLUS_2            1             83
  CLUS_3            5            113
D54V7, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            3            119
  CLUS_3            3             90
D54V8, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            1             10
  CLUS_3            5            176

Clustering(55) Variable = OR56A1 MUTATION ANALYSIS
D55V1, multiclass
D55V2, multiclass
D55V3, multiclass
        clus
vv       OR56A1 MUTATED OR56A1 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              2               50
  CLUS_3              1               26
  CLUS_4              1               55
D55V4, multiclass
        clus
vv       OR56A1 MUTATED OR56A1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              3               75
  CLUS_3              0               18
D55V5, multiclass
        clus
vv       OR56A1 MUTATED OR56A1 WILD-TYPE
  CLUS_1              5              112
  CLUS_2              1               92
  CLUS_3              2               87
D55V6, multiclass
        clus
vv       OR56A1 MUTATED OR56A1 WILD-TYPE
  CLUS_1              1               96
  CLUS_2              2               82
  CLUS_3              5              113
D55V7, multiclass
        clus
vv       OR56A1 MUTATED OR56A1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              116
  CLUS_3              1               92
D55V8, multiclass
        clus
vv       OR56A1 MUTATED OR56A1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              0               11
  CLUS_3              7              174

Clustering(56) Variable = OR2M2 MUTATION ANALYSIS
D56V1, multiclass
D56V2, multiclass
D56V3, multiclass
[1] "Remove cluster labels:" "OR2M2 MUTATED"         
clus
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              2             206 
     TCGA-BA-4074      TCGA-BA-4078      TCGA-BA-5149      TCGA-BA-5151 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-BA-5152      TCGA-BA-5153      TCGA-BA-5555      TCGA-BA-5556 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-BA-5557      TCGA-BA-5559      TCGA-BA-6869      TCGA-BA-6870 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-BA-6871      TCGA-BA-6872      TCGA-BA-6873      TCGA-BB-4217 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4723      TCGA-CN-4725      TCGA-CN-4726      TCGA-CN-4727 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4728      TCGA-CN-4729      TCGA-CN-4730      TCGA-CN-4731 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4733      TCGA-CN-4734      TCGA-CN-4735      TCGA-CN-4736 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4737      TCGA-CN-4738      TCGA-CN-4739      TCGA-CN-4740 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4741      TCGA-CN-4742      TCGA-CN-5355      TCGA-CN-5356 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-5358      TCGA-CN-5359      TCGA-CN-5360      TCGA-CN-5361 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-5363      TCGA-CN-5364      TCGA-CN-5365      TCGA-CN-5366 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-5367      TCGA-CN-5369      TCGA-CN-5370      TCGA-CN-5373 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-5374      TCGA-CN-6010      TCGA-CN-6011      TCGA-CN-6012 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-6013      TCGA-CN-6016      TCGA-CN-6017      TCGA-CN-6018 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-6019      TCGA-CN-6020      TCGA-CN-6022      TCGA-CN-6023 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-6024      TCGA-CN-6988      TCGA-CN-6989      TCGA-CN-6994 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-6995      TCGA-CN-6996      TCGA-CN-6997      TCGA-CN-6998 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-5323      TCGA-CQ-5324      TCGA-CQ-5325      TCGA-CQ-5326 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-5327      TCGA-CQ-5329      TCGA-CQ-5330      TCGA-CQ-5331 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-5332      TCGA-CQ-5334      TCGA-CQ-6218      TCGA-CQ-6219 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-6220      TCGA-CQ-6221      TCGA-CQ-6222      TCGA-CQ-6224 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-6225      TCGA-CQ-6227      TCGA-CQ-6228      TCGA-CQ-6229 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-7065      TCGA-CQ-7068      TCGA-CV-5430      TCGA-CV-5431 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5432      TCGA-CV-5434      TCGA-CV-5436      TCGA-CV-5439 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5440      TCGA-CV-5441      TCGA-CV-5442      TCGA-CV-5443 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5444      TCGA-CV-5966      TCGA-CV-5970      TCGA-CV-5971 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5973      TCGA-CV-5976      TCGA-CV-5977      TCGA-CV-5978 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5979      TCGA-CV-6003      TCGA-CV-6433      TCGA-CV-6436 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6441      TCGA-CV-6933      TCGA-CV-6934      TCGA-CV-6935 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6936      TCGA-CV-6937      TCGA-CV-6938      TCGA-CV-6939 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6940      TCGA-CV-6941      TCGA-CV-6942      TCGA-CV-6943 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6945      TCGA-CV-6948      TCGA-CV-6950      TCGA-CV-6951 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6952      TCGA-CV-6953      TCGA-CV-6954      TCGA-CV-6955 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6956      TCGA-CV-6959      TCGA-CV-6960      TCGA-CV-6961 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6962      TCGA-CV-7089      TCGA-CV-7090      TCGA-CV-7091 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7095      TCGA-CV-7097      TCGA-CV-7099      TCGA-CV-7100 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7101      TCGA-CV-7102      TCGA-CV-7103      TCGA-CV-7104 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7177      TCGA-CV-7178      TCGA-CV-7180      TCGA-CV-7183 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7235      TCGA-CV-7236      TCGA-CV-7238      TCGA-CV-7242 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7243      TCGA-CV-7245      TCGA-CV-7247      TCGA-CV-7248 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7250      TCGA-CV-7252      TCGA-CV-7253      TCGA-CV-7254 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7255      TCGA-CV-7261      TCGA-CV-7263      TCGA-CV-7406 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7407      TCGA-CV-7410      TCGA-CV-7411      TCGA-CV-7413 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7414      TCGA-CV-7415      TCGA-CV-7416      TCGA-CV-7418 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7421      TCGA-CV-7422      TCGA-CV-7423      TCGA-CV-7424 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7425      TCGA-CV-7427      TCGA-CV-7429      TCGA-CV-7430 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7432      TCGA-CV-7433      TCGA-CV-7434      TCGA-CV-7435 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7437      TCGA-CV-7438      TCGA-CV-7440      TCGA-CX-7085 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CX-7086      TCGA-CX-7219      TCGA-D6-6515      TCGA-D6-6516 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-D6-6517      TCGA-D6-6823      TCGA-D6-6824      TCGA-D6-6825 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-D6-6826      TCGA-D6-6827      TCGA-DQ-7591      TCGA-DQ-7592 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-IQ-7630      TCGA-IQ-7632 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
D56V4, multiclass
[1] "Remove cluster labels:" "OR2M2 MUTATED"         
clus
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              2             206 
     TCGA-BA-4074      TCGA-BA-4078      TCGA-BA-5149      TCGA-BA-5151 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-BA-5152      TCGA-BA-5153      TCGA-BA-5555      TCGA-BA-5556 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-BA-5557      TCGA-BA-5559      TCGA-BA-6869      TCGA-BA-6870 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-BA-6871      TCGA-BA-6872      TCGA-BA-6873      TCGA-BB-4217 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4723      TCGA-CN-4725      TCGA-CN-4726      TCGA-CN-4727 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4728      TCGA-CN-4729      TCGA-CN-4730      TCGA-CN-4731 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4733      TCGA-CN-4734      TCGA-CN-4735      TCGA-CN-4736 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4737      TCGA-CN-4738      TCGA-CN-4739      TCGA-CN-4740 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-4741      TCGA-CN-4742      TCGA-CN-5355      TCGA-CN-5356 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-5358      TCGA-CN-5359      TCGA-CN-5360      TCGA-CN-5361 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-5363      TCGA-CN-5364      TCGA-CN-5365      TCGA-CN-5366 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-5367      TCGA-CN-5369      TCGA-CN-5370      TCGA-CN-5373 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-5374      TCGA-CN-6010      TCGA-CN-6011      TCGA-CN-6012 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-6013      TCGA-CN-6016      TCGA-CN-6017      TCGA-CN-6018 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-6019      TCGA-CN-6020      TCGA-CN-6022      TCGA-CN-6023 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-6024      TCGA-CN-6988      TCGA-CN-6989      TCGA-CN-6994 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CN-6995      TCGA-CN-6996      TCGA-CN-6997      TCGA-CN-6998 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-5323      TCGA-CQ-5324      TCGA-CQ-5325      TCGA-CQ-5326 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-5327      TCGA-CQ-5329      TCGA-CQ-5330      TCGA-CQ-5331 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-5332      TCGA-CQ-5334      TCGA-CQ-6218      TCGA-CQ-6219 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-6220      TCGA-CQ-6221      TCGA-CQ-6222      TCGA-CQ-6224 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-6225      TCGA-CQ-6227      TCGA-CQ-6228      TCGA-CQ-6229 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CQ-7065      TCGA-CQ-7068      TCGA-CV-5430      TCGA-CV-5431 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5432      TCGA-CV-5434      TCGA-CV-5436      TCGA-CV-5439 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5440      TCGA-CV-5441      TCGA-CV-5442      TCGA-CV-5443 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5444      TCGA-CV-5966      TCGA-CV-5970      TCGA-CV-5971 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5973      TCGA-CV-5976      TCGA-CV-5977      TCGA-CV-5978 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-5979      TCGA-CV-6003      TCGA-CV-6433      TCGA-CV-6436 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6441      TCGA-CV-6933      TCGA-CV-6934      TCGA-CV-6935 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6936      TCGA-CV-6937      TCGA-CV-6938      TCGA-CV-6939 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6940      TCGA-CV-6941      TCGA-CV-6942      TCGA-CV-6943 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6945      TCGA-CV-6948      TCGA-CV-6950      TCGA-CV-6951 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6952      TCGA-CV-6953      TCGA-CV-6954      TCGA-CV-6955 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6956      TCGA-CV-6959      TCGA-CV-6960      TCGA-CV-6961 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-6962      TCGA-CV-7089      TCGA-CV-7090      TCGA-CV-7091 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7095      TCGA-CV-7097      TCGA-CV-7099      TCGA-CV-7100 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7101      TCGA-CV-7102      TCGA-CV-7103      TCGA-CV-7104 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7177      TCGA-CV-7178      TCGA-CV-7180      TCGA-CV-7183 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7235      TCGA-CV-7236      TCGA-CV-7238      TCGA-CV-7242 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7243      TCGA-CV-7245      TCGA-CV-7247      TCGA-CV-7248 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7250      TCGA-CV-7252      TCGA-CV-7253      TCGA-CV-7254 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7255      TCGA-CV-7261      TCGA-CV-7263      TCGA-CV-7406 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7407      TCGA-CV-7410      TCGA-CV-7411      TCGA-CV-7413 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7414      TCGA-CV-7415      TCGA-CV-7416      TCGA-CV-7418 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7421      TCGA-CV-7422      TCGA-CV-7423      TCGA-CV-7424 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7425      TCGA-CV-7427      TCGA-CV-7429      TCGA-CV-7430 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7432      TCGA-CV-7433      TCGA-CV-7434      TCGA-CV-7435 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CV-7437      TCGA-CV-7438      TCGA-CV-7440      TCGA-CX-7085 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-CX-7086      TCGA-CX-7219      TCGA-D6-6515      TCGA-D6-6516 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-D6-6517      TCGA-D6-6823      TCGA-D6-6824      TCGA-D6-6825 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-D6-6826      TCGA-D6-6827      TCGA-DQ-7591      TCGA-DQ-7592 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-IQ-7630      TCGA-IQ-7632 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
D56V5, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             6             111
  CLUS_2             1              92
  CLUS_3             1              88
D56V6, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             0              97
  CLUS_2             1              83
  CLUS_3             7             111
D56V7, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             118
  CLUS_3             1              92
D56V8, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              10
  CLUS_3             6             175

Clustering(57) Variable = OR4M2 MUTATION ANALYSIS
D57V1, multiclass
D57V2, multiclass
D57V3, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              50
  CLUS_3             0              27
  CLUS_4             1              55
D57V4, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              77
  CLUS_3             1              17
D57V5, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             4             113
  CLUS_2             2              91
  CLUS_3             1              88
D57V6, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             1              83
  CLUS_3             4             114
D57V7, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             118
  CLUS_3             1              92
D57V8, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             6             175

Clustering(58) Variable = CPXCR1 MUTATION ANALYSIS
D58V1, multiclass
D58V2, multiclass
D58V3, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              0               52
  CLUS_3              1               26
  CLUS_4              0               56
D58V4, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               76
  CLUS_3              1               17
D58V5, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2              115
  CLUS_2              1               92
  CLUS_3              4               85
D58V6, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              1               96
  CLUS_2              3               81
  CLUS_3              3              115
D58V7, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              119
  CLUS_3              1               92
D58V8, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              0               11
  CLUS_3              6              175

Clustering(59) Variable = EYA1 MUTATION ANALYSIS
D59V1, multiclass
D59V2, multiclass
D59V3, multiclass
        clus
vv       EYA1 MUTATED EYA1 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            2             50
  CLUS_3            0             27
  CLUS_4            3             53
D59V4, multiclass
        clus
vv       EYA1 MUTATED EYA1 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            2             76
  CLUS_3            0             18
D59V5, multiclass
        clus
vv       EYA1 MUTATED EYA1 WILD-TYPE
  CLUS_1            7            110
  CLUS_2            0             93
  CLUS_3            2             87
D59V6, multiclass
        clus
vv       EYA1 MUTATED EYA1 WILD-TYPE
  CLUS_1            0             97
  CLUS_2            2             82
  CLUS_3            7            111
D59V7, multiclass
        clus
vv       EYA1 MUTATED EYA1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            5            117
  CLUS_3            2             91
D59V8, multiclass
        clus
vv       EYA1 MUTATED EYA1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             10
  CLUS_3            7            174

Clustering(60) Variable = LINGO2 MUTATION ANALYSIS
D60V1, multiclass
D60V2, multiclass
D60V3, multiclass
        clus
vv       LINGO2 MUTATED LINGO2 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              3               49
  CLUS_3              0               27
  CLUS_4              0               56
D60V4, multiclass
        clus
vv       LINGO2 MUTATED LINGO2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               76
  CLUS_3              0               18
D60V5, multiclass
        clus
vv       LINGO2 MUTATED LINGO2 WILD-TYPE
  CLUS_1              8              109
  CLUS_2              0               93
  CLUS_3              2               87
D60V6, multiclass
        clus
vv       LINGO2 MUTATED LINGO2 WILD-TYPE
  CLUS_1              0               97
  CLUS_2              2               82
  CLUS_3              8              110
D60V7, multiclass
        clus
vv       LINGO2 MUTATED LINGO2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              115
  CLUS_3              1               92
D60V8, multiclass
        clus
vv       LINGO2 MUTATED LINGO2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              0               11
  CLUS_3              9              172

Clustering(61) Variable = SEMA5A MUTATION ANALYSIS
D61V1, multiclass
D61V2, multiclass
D61V3, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              5               68
  CLUS_2              4               48
  CLUS_3              1               26
  CLUS_4              3               53
D61V4, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              7              105
  CLUS_2              5               73
  CLUS_3              1               17
D61V5, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1             14              103
  CLUS_2              2               91
  CLUS_3              3               86
D61V6, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              2               95
  CLUS_2              4               80
  CLUS_3             13              105
D61V7, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              6               83
  CLUS_2             10              112
  CLUS_3              3               90
D61V8, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2                9
  CLUS_3             14              167

Clustering(62) Variable = TGFBR2 MUTATION ANALYSIS
D62V1, multiclass
D62V2, multiclass
D62V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              1               51
  CLUS_3              0               27
  CLUS_4              4               52
D62V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              3               75
  CLUS_3              0               18
D62V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2              115
  CLUS_2              3               90
  CLUS_3              5               84
D62V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4               93
  CLUS_2              3               81
  CLUS_3              3              115
D62V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              119
  CLUS_3              4               89
D62V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              0               11
  CLUS_3              6              175

Clustering(63) Variable = PLSCR1 MUTATION ANALYSIS
D63V1, multiclass
D63V2, multiclass
D63V3, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              1               51
  CLUS_3              0               27
  CLUS_4              1               55
D63V4, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               77
  CLUS_3              0               18
D63V5, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              1              116
  CLUS_2              3               90
  CLUS_3              1               88
D63V6, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              3               94
  CLUS_2              1               83
  CLUS_3              1              117
D63V7, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              118
  CLUS_3              0               93
D63V8, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               11
  CLUS_3              2              179

Clustering(64) Variable = LIN28B MUTATION ANALYSIS
D64V1, multiclass
D64V2, multiclass
D64V3, multiclass
        clus
vv       LIN28B MUTATED LIN28B WILD-TYPE
  CLUS_1              1               72
  CLUS_2              1               51
  CLUS_3              1               26
  CLUS_4              0               56
D64V4, multiclass
        clus
vv       LIN28B MUTATED LIN28B WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               77
  CLUS_3              0               18
D64V5, multiclass
        clus
vv       LIN28B MUTATED LIN28B WILD-TYPE
  CLUS_1              3              114
  CLUS_2              1               92
  CLUS_3              1               88
D64V6, multiclass
        clus
vv       LIN28B MUTATED LIN28B WILD-TYPE
  CLUS_1              1               96
  CLUS_2              1               83
  CLUS_3              3              115
D64V7, multiclass
        clus
vv       LIN28B MUTATED LIN28B WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              118
  CLUS_3              1               92
D64V8, multiclass
        clus
vv       LIN28B MUTATED LIN28B WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               10
  CLUS_3              4              177

Clustering(65) Variable = AGTR1 MUTATION ANALYSIS
D65V1, multiclass
D65V2, multiclass
D65V3, multiclass
        clus
vv       AGTR1 MUTATED AGTR1 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             0              52
  CLUS_3             0              27
  CLUS_4             0              56
D65V4, multiclass
        clus
vv       AGTR1 MUTATED AGTR1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              75
  CLUS_3             0              18
D65V5, multiclass
        clus
vv       AGTR1 MUTATED AGTR1 WILD-TYPE
  CLUS_1             6             111
  CLUS_2             1              92
  CLUS_3             1              88
D65V6, multiclass
        clus
vv       AGTR1 MUTATED AGTR1 WILD-TYPE
  CLUS_1             1              96
  CLUS_2             1              83
  CLUS_3             6             112
D65V7, multiclass
        clus
vv       AGTR1 MUTATED AGTR1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             116
  CLUS_3             0              93
D65V8, multiclass
        clus
vv       AGTR1 MUTATED AGTR1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             6             175

Clustering(66) Variable = C6 MUTATION ANALYSIS
D66V1, multiclass
D66V2, multiclass
D66V3, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          2           71
  CLUS_2          0           52
  CLUS_3          3           24
  CLUS_4          3           53
D66V4, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          5          107
  CLUS_2          3           75
  CLUS_3          0           18
D66V5, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          2          115
  CLUS_2          3           90
  CLUS_3          7           82
D66V6, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          5           92
  CLUS_2          5           79
  CLUS_3          2          116
D66V7, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          4           85
  CLUS_2          3          119
  CLUS_3          5           88
D66V8, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          4          108
  CLUS_2          0           11
  CLUS_3          8          173

Clustering(67) Variable = MS4A14 MUTATION ANALYSIS
D67V1, multiclass
D67V2, multiclass
D67V3, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              0               52
  CLUS_3              1               26
  CLUS_4              1               55
D67V4, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               77
  CLUS_3              0               18
D67V5, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              5              112
  CLUS_2              1               92
  CLUS_3              3               86
D67V6, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              3               94
  CLUS_2              1               83
  CLUS_3              5              113
D67V7, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              117
  CLUS_3              3               90
D67V8, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               11
  CLUS_3              6              175

Clustering(68) Variable = HIST1H4E MUTATION ANALYSIS
D68V1, multiclass
D68V2, multiclass
D68V3, multiclass
        clus
vv       HIST1H4E MUTATED HIST1H4E WILD-TYPE
  CLUS_1                1                 72
  CLUS_2                0                 52
  CLUS_3                0                 27
  CLUS_4                3                 53
D68V4, multiclass
        clus
vv       HIST1H4E MUTATED HIST1H4E WILD-TYPE
  CLUS_1                3                109
  CLUS_2                1                 77
  CLUS_3                0                 18
D68V5, multiclass
        clus
vv       HIST1H4E MUTATED HIST1H4E WILD-TYPE
  CLUS_1                2                115
  CLUS_2                1                 92
  CLUS_3                2                 87
D68V6, multiclass
        clus
vv       HIST1H4E MUTATED HIST1H4E WILD-TYPE
  CLUS_1                1                 96
  CLUS_2                3                 81
  CLUS_3                1                117
D68V7, multiclass
        clus
vv       HIST1H4E MUTATED HIST1H4E WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                3                119
  CLUS_3                0                 93
D68V8, multiclass
        clus
vv       HIST1H4E MUTATED HIST1H4E WILD-TYPE
  CLUS_1                0                112
  CLUS_2                0                 11
  CLUS_3                5                176

Clustering(69) Variable = LBP MUTATION ANALYSIS
D69V1, multiclass
D69V2, multiclass
D69V3, multiclass
[1] "Remove cluster labels:" "LBP MUTATED"           
clus
  LBP MUTATED LBP WILD-TYPE 
            2           206 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6873    TCGA-BB-4217 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727    TCGA-CN-4728 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4731    TCGA-CN-4733    TCGA-CN-4734 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738    TCGA-CN-4739 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-4740    TCGA-CN-4741    TCGA-CN-4742    TCGA-CN-5355    TCGA-CN-5356 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-5358    TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361    TCGA-CN-5363 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-5364    TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367    TCGA-CN-5369 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-5370    TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010    TCGA-CN-6011 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017    TCGA-CN-6018 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022    TCGA-CN-6023 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992    TCGA-CN-6994 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998    TCGA-CQ-5323 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327    TCGA-CQ-5329 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334    TCGA-CQ-6218 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222    TCGA-CQ-6224 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-6225    TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229    TCGA-CQ-7065 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-7068    TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432    TCGA-CV-5434 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-5436    TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441    TCGA-CV-5442 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-5443    TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970    TCGA-CV-5971 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-5973    TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978    TCGA-CV-5979 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6003    TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441    TCGA-CV-6933 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6934    TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937    TCGA-CV-6938 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6939    TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942    TCGA-CV-6943 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6945    TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951    TCGA-CV-6952 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6953    TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956    TCGA-CV-6959 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6960    TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089    TCGA-CV-7090 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7091    TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7099    TCGA-CV-7100 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7101    TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7178    TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7238    TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7248    TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7255    TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7410    TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7415    TCGA-CV-7416 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423    TCGA-CV-7424 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430    TCGA-CV-7432 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437    TCGA-CV-7438 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219    TCGA-D6-6515 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824    TCGA-D6-6825 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592    TCGA-IQ-7630 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-IQ-7632 
"LBP WILD-TYPE" 
D69V4, multiclass
[1] "Remove cluster labels:" "LBP MUTATED"           
clus
  LBP MUTATED LBP WILD-TYPE 
            2           206 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6873    TCGA-BB-4217 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727    TCGA-CN-4728 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4731    TCGA-CN-4733    TCGA-CN-4734 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738    TCGA-CN-4739 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-4740    TCGA-CN-4741    TCGA-CN-4742    TCGA-CN-5355    TCGA-CN-5356 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-5358    TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361    TCGA-CN-5363 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-5364    TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367    TCGA-CN-5369 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-5370    TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010    TCGA-CN-6011 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017    TCGA-CN-6018 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022    TCGA-CN-6023 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992    TCGA-CN-6994 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998    TCGA-CQ-5323 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327    TCGA-CQ-5329 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334    TCGA-CQ-6218 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222    TCGA-CQ-6224 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-6225    TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229    TCGA-CQ-7065 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CQ-7068    TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432    TCGA-CV-5434 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-5436    TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441    TCGA-CV-5442 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-5443    TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970    TCGA-CV-5971 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-5973    TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978    TCGA-CV-5979 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6003    TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441    TCGA-CV-6933 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6934    TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937    TCGA-CV-6938 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6939    TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942    TCGA-CV-6943 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6945    TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951    TCGA-CV-6952 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6953    TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956    TCGA-CV-6959 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-6960    TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089    TCGA-CV-7090 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7091    TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7099    TCGA-CV-7100 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7101    TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7178    TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7238    TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7248    TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7255    TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7410    TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7415    TCGA-CV-7416 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423    TCGA-CV-7424 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430    TCGA-CV-7432 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437    TCGA-CV-7438 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219    TCGA-D6-6515 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824    TCGA-D6-6825 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592    TCGA-IQ-7630 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-IQ-7632 
"LBP WILD-TYPE" 
D69V5, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           3           114
  CLUS_2           1            92
  CLUS_3           2            87
D69V6, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           1            96
  CLUS_2           2            82
  CLUS_3           3           115
D69V7, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           2            87
  CLUS_2           3           119
  CLUS_3           2            91
D69V8, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           3           109
  CLUS_2           0            11
  CLUS_3           4           177

Clustering(70) Variable = RGS17 MUTATION ANALYSIS
D70V1, multiclass
D70V2, multiclass
D70V3, multiclass
[1] "Remove cluster labels:" "RGS17 MUTATED"         
clus
  RGS17 MUTATED RGS17 WILD-TYPE 
              1             207 
     TCGA-BA-4074      TCGA-BA-4078      TCGA-BA-5149      TCGA-BA-5151 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-BA-5152      TCGA-BA-5153      TCGA-BA-5555      TCGA-BA-5556 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-BA-5557      TCGA-BA-5559      TCGA-BA-6869      TCGA-BA-6870 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-BA-6871      TCGA-BA-6872      TCGA-BA-6873      TCGA-BB-4217 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4723      TCGA-CN-4725      TCGA-CN-4726      TCGA-CN-4727 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4728      TCGA-CN-4729      TCGA-CN-4730      TCGA-CN-4731 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4733      TCGA-CN-4734      TCGA-CN-4735      TCGA-CN-4736 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4737      TCGA-CN-4738      TCGA-CN-4739      TCGA-CN-4740 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4741      TCGA-CN-4742      TCGA-CN-5355      TCGA-CN-5356 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-5358      TCGA-CN-5359      TCGA-CN-5360      TCGA-CN-5361 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-5363      TCGA-CN-5364      TCGA-CN-5365      TCGA-CN-5366 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-5367      TCGA-CN-5369      TCGA-CN-5370      TCGA-CN-5373 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-5374      TCGA-CN-6010      TCGA-CN-6011      TCGA-CN-6012 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6013      TCGA-CN-6016      TCGA-CN-6017      TCGA-CN-6018 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6019      TCGA-CN-6020      TCGA-CN-6021      TCGA-CN-6022 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6023      TCGA-CN-6024      TCGA-CN-6988      TCGA-CN-6989 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6992      TCGA-CN-6994      TCGA-CN-6995      TCGA-CN-6996 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6997      TCGA-CN-6998      TCGA-CQ-5323      TCGA-CQ-5324 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-5325      TCGA-CQ-5326      TCGA-CQ-5327      TCGA-CQ-5329 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-5330      TCGA-CQ-5331      TCGA-CQ-5332      TCGA-CQ-5334 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-6218      TCGA-CQ-6219      TCGA-CQ-6220      TCGA-CQ-6221 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-6222      TCGA-CQ-6224      TCGA-CQ-6225      TCGA-CQ-6227 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-6228      TCGA-CQ-6229      TCGA-CQ-7065      TCGA-CQ-7068 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5430      TCGA-CV-5431      TCGA-CV-5432      TCGA-CV-5434 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5436      TCGA-CV-5439      TCGA-CV-5440      TCGA-CV-5441 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5442      TCGA-CV-5443      TCGA-CV-5444      TCGA-CV-5966 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5970      TCGA-CV-5971      TCGA-CV-5973      TCGA-CV-5976 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5977      TCGA-CV-5978      TCGA-CV-5979      TCGA-CV-6003 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6433      TCGA-CV-6436      TCGA-CV-6441      TCGA-CV-6933 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6934      TCGA-CV-6935      TCGA-CV-6936      TCGA-CV-6937 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6938      TCGA-CV-6939      TCGA-CV-6940      TCGA-CV-6941 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6942      TCGA-CV-6943      TCGA-CV-6945      TCGA-CV-6948 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6950      TCGA-CV-6951      TCGA-CV-6952      TCGA-CV-6953 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6954      TCGA-CV-6956      TCGA-CV-6959      TCGA-CV-6960 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6961      TCGA-CV-6962      TCGA-CV-7089      TCGA-CV-7090 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7091      TCGA-CV-7095      TCGA-CV-7097      TCGA-CV-7099 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7100      TCGA-CV-7101      TCGA-CV-7102      TCGA-CV-7103 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7104      TCGA-CV-7177      TCGA-CV-7178      TCGA-CV-7180 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7183      TCGA-CV-7235      TCGA-CV-7236      TCGA-CV-7238 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7242      TCGA-CV-7243      TCGA-CV-7245      TCGA-CV-7247 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7248      TCGA-CV-7250      TCGA-CV-7252      TCGA-CV-7253 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7254      TCGA-CV-7255      TCGA-CV-7261      TCGA-CV-7263 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7406      TCGA-CV-7407      TCGA-CV-7410      TCGA-CV-7411 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7413      TCGA-CV-7414      TCGA-CV-7415      TCGA-CV-7416 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7418      TCGA-CV-7421      TCGA-CV-7422      TCGA-CV-7423 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7424      TCGA-CV-7425      TCGA-CV-7427      TCGA-CV-7429 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7430      TCGA-CV-7432      TCGA-CV-7433      TCGA-CV-7434 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7435      TCGA-CV-7437      TCGA-CV-7438      TCGA-CV-7440 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CX-7085      TCGA-CX-7086      TCGA-CX-7219      TCGA-D6-6515 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-D6-6516      TCGA-D6-6517      TCGA-D6-6823      TCGA-D6-6824 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-D6-6825      TCGA-D6-6826      TCGA-D6-6827      TCGA-DQ-7591 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-DQ-7592      TCGA-IQ-7630      TCGA-IQ-7632 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
D70V4, multiclass
[1] "Remove cluster labels:" "RGS17 MUTATED"         
clus
  RGS17 MUTATED RGS17 WILD-TYPE 
              1             207 
     TCGA-BA-4074      TCGA-BA-4078      TCGA-BA-5149      TCGA-BA-5151 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-BA-5152      TCGA-BA-5153      TCGA-BA-5555      TCGA-BA-5556 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-BA-5557      TCGA-BA-5559      TCGA-BA-6869      TCGA-BA-6870 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-BA-6871      TCGA-BA-6872      TCGA-BA-6873      TCGA-BB-4217 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4723      TCGA-CN-4725      TCGA-CN-4726      TCGA-CN-4727 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4728      TCGA-CN-4729      TCGA-CN-4730      TCGA-CN-4731 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4733      TCGA-CN-4734      TCGA-CN-4735      TCGA-CN-4736 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4737      TCGA-CN-4738      TCGA-CN-4739      TCGA-CN-4740 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-4741      TCGA-CN-4742      TCGA-CN-5355      TCGA-CN-5356 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-5358      TCGA-CN-5359      TCGA-CN-5360      TCGA-CN-5361 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-5363      TCGA-CN-5364      TCGA-CN-5365      TCGA-CN-5366 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-5367      TCGA-CN-5369      TCGA-CN-5370      TCGA-CN-5373 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-5374      TCGA-CN-6010      TCGA-CN-6011      TCGA-CN-6012 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6013      TCGA-CN-6016      TCGA-CN-6017      TCGA-CN-6018 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6019      TCGA-CN-6020      TCGA-CN-6021      TCGA-CN-6022 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6023      TCGA-CN-6024      TCGA-CN-6988      TCGA-CN-6989 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6992      TCGA-CN-6994      TCGA-CN-6995      TCGA-CN-6996 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CN-6997      TCGA-CN-6998      TCGA-CQ-5323      TCGA-CQ-5324 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-5325      TCGA-CQ-5326      TCGA-CQ-5327      TCGA-CQ-5329 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-5330      TCGA-CQ-5331      TCGA-CQ-5332      TCGA-CQ-5334 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-6218      TCGA-CQ-6219      TCGA-CQ-6220      TCGA-CQ-6221 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-6222      TCGA-CQ-6224      TCGA-CQ-6225      TCGA-CQ-6227 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CQ-6228      TCGA-CQ-6229      TCGA-CQ-7065      TCGA-CQ-7068 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5430      TCGA-CV-5431      TCGA-CV-5432      TCGA-CV-5434 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5436      TCGA-CV-5439      TCGA-CV-5440      TCGA-CV-5441 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5442      TCGA-CV-5443      TCGA-CV-5444      TCGA-CV-5966 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5970      TCGA-CV-5971      TCGA-CV-5973      TCGA-CV-5976 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-5977      TCGA-CV-5978      TCGA-CV-5979      TCGA-CV-6003 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6433      TCGA-CV-6436      TCGA-CV-6441      TCGA-CV-6933 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6934      TCGA-CV-6935      TCGA-CV-6936      TCGA-CV-6937 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6938      TCGA-CV-6939      TCGA-CV-6940      TCGA-CV-6941 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6942      TCGA-CV-6943      TCGA-CV-6945      TCGA-CV-6948 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6950      TCGA-CV-6951      TCGA-CV-6952      TCGA-CV-6953 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6954      TCGA-CV-6956      TCGA-CV-6959      TCGA-CV-6960 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-6961      TCGA-CV-6962      TCGA-CV-7089      TCGA-CV-7090 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7091      TCGA-CV-7095      TCGA-CV-7097      TCGA-CV-7099 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7100      TCGA-CV-7101      TCGA-CV-7102      TCGA-CV-7103 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7104      TCGA-CV-7177      TCGA-CV-7178      TCGA-CV-7180 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7183      TCGA-CV-7235      TCGA-CV-7236      TCGA-CV-7238 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7242      TCGA-CV-7243      TCGA-CV-7245      TCGA-CV-7247 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7248      TCGA-CV-7250      TCGA-CV-7252      TCGA-CV-7253 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7254      TCGA-CV-7255      TCGA-CV-7261      TCGA-CV-7263 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7406      TCGA-CV-7407      TCGA-CV-7410      TCGA-CV-7411 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7413      TCGA-CV-7414      TCGA-CV-7415      TCGA-CV-7416 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7418      TCGA-CV-7421      TCGA-CV-7422      TCGA-CV-7423 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7424      TCGA-CV-7425      TCGA-CV-7427      TCGA-CV-7429 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7430      TCGA-CV-7432      TCGA-CV-7433      TCGA-CV-7434 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CV-7435      TCGA-CV-7437      TCGA-CV-7438      TCGA-CV-7440 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-CX-7085      TCGA-CX-7086      TCGA-CX-7219      TCGA-D6-6515 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-D6-6516      TCGA-D6-6517      TCGA-D6-6823      TCGA-D6-6824 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-D6-6825      TCGA-D6-6826      TCGA-D6-6827      TCGA-DQ-7591 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
     TCGA-DQ-7592      TCGA-IQ-7630      TCGA-IQ-7632 
"RGS17 WILD-TYPE" "RGS17 WILD-TYPE" "RGS17 WILD-TYPE" 
D70V5, multiclass
        clus
vv       RGS17 MUTATED RGS17 WILD-TYPE
  CLUS_1             4             113
  CLUS_2             0              93
  CLUS_3             1              88
D70V6, multiclass
        clus
vv       RGS17 MUTATED RGS17 WILD-TYPE
  CLUS_1             0              97
  CLUS_2             1              83
  CLUS_3             4             114
D70V7, multiclass
        clus
vv       RGS17 MUTATED RGS17 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             118
  CLUS_3             0              93
D70V8, multiclass
        clus
vv       RGS17 MUTATED RGS17 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              11
  CLUS_3             5             176

Clustering(71) Variable = LILRB1 MUTATION ANALYSIS
D71V1, multiclass
D71V2, multiclass
D71V3, multiclass
        clus
vv       LILRB1 MUTATED LILRB1 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              2               50
  CLUS_3              1               26
  CLUS_4              0               56
D71V4, multiclass
        clus
vv       LILRB1 MUTATED LILRB1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              3               75
  CLUS_3              0               18
D71V5, multiclass
        clus
vv       LILRB1 MUTATED LILRB1 WILD-TYPE
  CLUS_1              4              113
  CLUS_2              3               90
  CLUS_3              4               85
D71V6, multiclass
        clus
vv       LILRB1 MUTATED LILRB1 WILD-TYPE
  CLUS_1              3               94
  CLUS_2              3               81
  CLUS_3              5              113
D71V7, multiclass
        clus
vv       LILRB1 MUTATED LILRB1 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              4              118
  CLUS_3              3               90
D71V8, multiclass
        clus
vv       LILRB1 MUTATED LILRB1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              1               10
  CLUS_3              8              173

Clustering(72) Variable = MAGEL2 MUTATION ANALYSIS
D72V1, multiclass
D72V2, multiclass
D72V3, multiclass
        clus
vv       MAGEL2 MUTATED MAGEL2 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              2               50
  CLUS_3              3               24
  CLUS_4              2               54
D72V4, multiclass
        clus
vv       MAGEL2 MUTATED MAGEL2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               74
  CLUS_3              1               17
D72V5, multiclass
        clus
vv       MAGEL2 MUTATED MAGEL2 WILD-TYPE
  CLUS_1              6              111
  CLUS_2              2               91
  CLUS_3              4               85
D72V6, multiclass
        clus
vv       MAGEL2 MUTATED MAGEL2 WILD-TYPE
  CLUS_1              2               95
  CLUS_2              3               81
  CLUS_3              7              111
D72V7, multiclass
        clus
vv       MAGEL2 MUTATED MAGEL2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              7              115
  CLUS_3              2               91
D72V8, multiclass
        clus
vv       MAGEL2 MUTATED MAGEL2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              1               10
  CLUS_3              8              173

Clustering(73) Variable = OR8D4 MUTATION ANALYSIS
D73V1, multiclass
D73V2, multiclass
D73V3, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             2              50
  CLUS_3             1              26
  CLUS_4             1              55
D73V4, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              74
  CLUS_3             0              18
D73V5, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             1             116
  CLUS_2             2              91
  CLUS_3             3              86
D73V6, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             2              82
  CLUS_3             2             116
D73V7, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1             121
  CLUS_3             2              91
D73V8, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             0              11
  CLUS_3             3             178

Clustering(74) Variable = HIST1H1B MUTATION ANALYSIS
D74V1, multiclass
D74V2, multiclass
D74V3, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                 72
  CLUS_2                2                 50
  CLUS_3                1                 26
  CLUS_4                2                 54
D74V4, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                109
  CLUS_2                3                 75
  CLUS_3                0                 18
D74V5, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                115
  CLUS_2                2                 91
  CLUS_3                3                 86
D74V6, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 95
  CLUS_2                3                 81
  CLUS_3                2                116
D74V7, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                4                118
  CLUS_3                0                 93
D74V8, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                111
  CLUS_2                2                  9
  CLUS_3                4                177

Clustering(75) Variable = C3ORF59 MUTATION ANALYSIS
D75V1, multiclass
D75V2, multiclass
D75V3, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               3                70
  CLUS_2               0                52
  CLUS_3               0                27
  CLUS_4               0                56
D75V4, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               1                77
  CLUS_3               2                16
D75V5, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               3               114
  CLUS_2               2                91
  CLUS_3               2                87
D75V6, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               2                95
  CLUS_2               2                82
  CLUS_3               3               115
D75V7, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               118
  CLUS_3               2                91
D75V8, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               0                11
  CLUS_3               5               176

Clustering(76) Variable = C8ORF34 MUTATION ANALYSIS
D76V1, multiclass
D76V2, multiclass
D76V3, multiclass
        clus
vv       C8ORF34 MUTATED C8ORF34 WILD-TYPE
  CLUS_1               3                70
  CLUS_2               2                50
  CLUS_3               1                26
  CLUS_4               0                56
D76V4, multiclass
        clus
vv       C8ORF34 MUTATED C8ORF34 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                73
  CLUS_3               0                18
D76V5, multiclass
        clus
vv       C8ORF34 MUTATED C8ORF34 WILD-TYPE
  CLUS_1               2               115
  CLUS_2               2                91
  CLUS_3               3                86
D76V6, multiclass
        clus
vv       C8ORF34 MUTATED C8ORF34 WILD-TYPE
  CLUS_1               2                95
  CLUS_2               2                82
  CLUS_3               3               115
D76V7, multiclass
        clus
vv       C8ORF34 MUTATED C8ORF34 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               2               120
  CLUS_3               1                92
D76V8, multiclass
        clus
vv       C8ORF34 MUTATED C8ORF34 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               0                11
  CLUS_3               4               177

Clustering(77) Variable = OR8J1 MUTATION ANALYSIS
D77V1, multiclass
D77V2, multiclass
D77V3, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             5              68
  CLUS_2             0              52
  CLUS_3             0              27
  CLUS_4             0              56
D77V4, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              74
  CLUS_3             1              17
D77V5, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             6             111
  CLUS_2             2              91
  CLUS_3             1              88
D77V6, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             1              83
  CLUS_3             6             112
D77V7, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             116
  CLUS_3             2              91
D77V8, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             7             174

Clustering(78) Variable = RAB32 MUTATION ANALYSIS
D78V1, multiclass
D78V2, multiclass
D78V3, multiclass
        clus
vv       RAB32 MUTATED RAB32 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              52
  CLUS_3             0              27
  CLUS_4             1              55
D78V4, multiclass
        clus
vv       RAB32 MUTATED RAB32 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              76
  CLUS_3             0              18
D78V5, multiclass
        clus
vv       RAB32 MUTATED RAB32 WILD-TYPE
  CLUS_1             3             114
  CLUS_2             0              93
  CLUS_3             0              89
D78V6, multiclass
        clus
vv       RAB32 MUTATED RAB32 WILD-TYPE
  CLUS_1             0              97
  CLUS_2             0              84
  CLUS_3             3             115
D78V7, multiclass
        clus
vv       RAB32 MUTATED RAB32 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             121
  CLUS_3             0              93
D78V8, multiclass
        clus
vv       RAB32 MUTATED RAB32 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              11
  CLUS_3             3             178

Clustering(79) Variable = TMEM195 MUTATION ANALYSIS
D79V1, multiclass
D79V2, multiclass
D79V3, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               2                50
  CLUS_3               0                27
  CLUS_4               3                53
D79V4, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               2                76
  CLUS_3               1                17
D79V5, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               4               113
  CLUS_2               2                91
  CLUS_3               2                87
D79V6, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               2                95
  CLUS_2               2                82
  CLUS_3               4               114
D79V7, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               3               119
  CLUS_3               2                91
D79V8, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               0                11
  CLUS_3               5               176

Clustering(80) Variable = PCDH11X MUTATION ANALYSIS
D80V1, multiclass
D80V2, multiclass
D80V3, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               6                67
  CLUS_2               4                48
  CLUS_3               1                26
  CLUS_4               2                54
D80V4, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               3               109
  CLUS_2               7                71
  CLUS_3               3                15
D80V5, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1              11               106
  CLUS_2               4                89
  CLUS_3               6                83
D80V6, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               4                93
  CLUS_2               6                78
  CLUS_3              11               107
D80V7, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               7                82
  CLUS_2               9               113
  CLUS_3               5                88
D80V8, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               7               105
  CLUS_2               0                11
  CLUS_3              14               167

Clustering(81) Variable = SLITRK4 MUTATION ANALYSIS
D81V1, multiclass
D81V2, multiclass
D81V3, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               4                48
  CLUS_3               2                25
  CLUS_4               2                54
D81V4, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               7               105
  CLUS_2               3                75
  CLUS_3               0                18
D81V5, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               8               109
  CLUS_2               1                92
  CLUS_3               3                86
D81V6, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               1                96
  CLUS_2               3                81
  CLUS_3               8               110
D81V7, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               7               115
  CLUS_3               1                92
D81V8, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               0                11
  CLUS_3              10               171

Clustering(82) Variable = FRG2B MUTATION ANALYSIS
D82V1, multiclass
D82V2, multiclass
D82V3, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0              73
  CLUS_2             1              51
  CLUS_3             1              26
  CLUS_4             1              55
D82V4, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              76
  CLUS_3             0              18
D82V5, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             4             113
  CLUS_2             2              91
  CLUS_3             0              89
D82V6, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             2              95
  CLUS_2             0              84
  CLUS_3             4             114
D82V7, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             117
  CLUS_3             1              92
D82V8, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             3             109
  CLUS_2             0              11
  CLUS_3             3             178

Clustering(83) Variable = OR2L13 MUTATION ANALYSIS
D83V1, multiclass
D83V2, multiclass
D83V3, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              4               48
  CLUS_3              1               26
  CLUS_4              0               56
D83V4, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               76
  CLUS_3              0               18
D83V5, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              2              115
  CLUS_2              1               92
  CLUS_3              4               85
D83V6, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              1               96
  CLUS_2              3               81
  CLUS_3              3              115
D83V7, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              119
  CLUS_3              1               92
D83V8, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2                9
  CLUS_3              5              176

Clustering(84) Variable = CUL3 MUTATION ANALYSIS
D84V1, multiclass
D84V2, multiclass
D84V3, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            3             49
  CLUS_3            0             27
  CLUS_4            2             54
D84V4, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            2             76
  CLUS_3            1             17
D84V5, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            112
  CLUS_2            4             89
  CLUS_3            1             88
D84V6, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            3             94
  CLUS_2            2             82
  CLUS_3            5            113
D84V7, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            116
  CLUS_3            2             91
D84V8, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            0             11
  CLUS_3            4            177

Clustering(85) Variable = FOSL2 MUTATION ANALYSIS
D85V1, multiclass
D85V2, multiclass
D85V3, multiclass
        clus
vv       FOSL2 MUTATED FOSL2 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2              50
  CLUS_3             1              26
  CLUS_4             1              55
D85V4, multiclass
        clus
vv       FOSL2 MUTATED FOSL2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              76
  CLUS_3             0              18
D85V5, multiclass
        clus
vv       FOSL2 MUTATED FOSL2 WILD-TYPE
  CLUS_1             2             115
  CLUS_2             1              92
  CLUS_3             4              85
D85V6, multiclass
        clus
vv       FOSL2 MUTATED FOSL2 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             3              81
  CLUS_3             2             116
D85V7, multiclass
        clus
vv       FOSL2 MUTATED FOSL2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             2             120
  CLUS_3             1              92
D85V8, multiclass
        clus
vv       FOSL2 MUTATED FOSL2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              10
  CLUS_3             4             177

Clustering(86) Variable = GPR158 MUTATION ANALYSIS
D86V1, multiclass
D86V2, multiclass
D86V3, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              2               50
  CLUS_3              1               26
  CLUS_4              2               54
D86V4, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              4               74
  CLUS_3              0               18
D86V5, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              6              111
  CLUS_2              2               91
  CLUS_3              4               85
D86V6, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              2               95
  CLUS_2              4               80
  CLUS_3              6              112
D86V7, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              5              117
  CLUS_3              3               90
D86V8, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               11
  CLUS_3              9              172

Clustering(87) Variable = PTPRT MUTATION ANALYSIS
D87V1, multiclass
D87V2, multiclass
D87V3, multiclass
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  CLUS_1             5              68
  CLUS_2             3              49
  CLUS_3             3              24
  CLUS_4             2              54
D87V4, multiclass
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  CLUS_1             8             104
  CLUS_2             5              73
  CLUS_3             0              18
D87V5, multiclass
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  CLUS_1             5             112
  CLUS_2             4              89
  CLUS_3            10              79
D87V6, multiclass
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  CLUS_1             5              92
  CLUS_2             7              77
  CLUS_3             7             111
D87V7, multiclass
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  CLUS_1             8              81
  CLUS_2             6             116
  CLUS_3             5              88
D87V8, multiclass
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  CLUS_1             5             107
  CLUS_2             0              11
  CLUS_3            14             167

Clustering(88) Variable = POTEH MUTATION ANALYSIS
D88V1, multiclass
D88V2, multiclass
D88V3, multiclass
        clus
vv       POTEH MUTATED POTEH WILD-TYPE
  CLUS_1             0              73
  CLUS_2             1              51
  CLUS_3             1              26
  CLUS_4             3              53
D88V4, multiclass
        clus
vv       POTEH MUTATED POTEH WILD-TYPE
  CLUS_1             5             107
  CLUS_2             0              78
  CLUS_3             0              18
D88V5, multiclass
        clus
vv       POTEH MUTATED POTEH WILD-TYPE
  CLUS_1             5             112
  CLUS_2             0              93
  CLUS_3             2              87
D88V6, multiclass
        clus
vv       POTEH MUTATED POTEH WILD-TYPE
  CLUS_1             0              97
  CLUS_2             2              82
  CLUS_3             5             113
D88V7, multiclass
        clus
vv       POTEH MUTATED POTEH WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             118
  CLUS_3             1              92
D88V8, multiclass
        clus
vv       POTEH MUTATED POTEH WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             5             176

Clustering(89) Variable = OR5D13 MUTATION ANALYSIS
D89V1, multiclass
D89V2, multiclass
D89V3, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              1               51
  CLUS_3              0               27
  CLUS_4              1               55
D89V4, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               76
  CLUS_3              0               18
D89V5, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              3              114
  CLUS_2              2               91
  CLUS_3              2               87
D89V6, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2               95
  CLUS_2              2               82
  CLUS_3              3              115
D89V7, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              119
  CLUS_3              2               91
D89V8, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              0               11
  CLUS_3              5              176

Clustering(90) Variable = PRB1 MUTATION ANALYSIS
D90V1, multiclass
D90V2, multiclass
D90V3, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             51
  CLUS_3            0             27
  CLUS_4            0             56
D90V4, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             76
  CLUS_3            0             18
D90V5, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            2            115
  CLUS_2            3             90
  CLUS_3            2             87
D90V6, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            2             95
  CLUS_2            1             83
  CLUS_3            4            114
D90V7, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            3            119
  CLUS_3            0             93
D90V8, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            0             11
  CLUS_3            4            177

Clustering(91) Variable = NEUROD6 MUTATION ANALYSIS
D91V1, multiclass
D91V2, multiclass
D91V3, multiclass
[1] "Remove cluster labels:" "NEUROD6 MUTATED"       
clus
  NEUROD6 MUTATED NEUROD6 WILD-TYPE 
                2               206 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-BA-5152        TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-BA-5557        TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4734        TCGA-CN-4735        TCGA-CN-4736 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5361        TCGA-CN-5363 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-6219        TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6222 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-6229        TCGA-CQ-7065        TCGA-CQ-7068        TCGA-CV-5430 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5436 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6939 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7429        TCGA-CV-7430 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434        TCGA-CV-7435 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440        TCGA-CX-7085 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-DQ-7591        TCGA-DQ-7592 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7632 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
D91V4, multiclass
[1] "Remove cluster labels:" "NEUROD6 MUTATED"       
clus
  NEUROD6 MUTATED NEUROD6 WILD-TYPE 
                2               206 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-BA-5152        TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-BA-5557        TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4734        TCGA-CN-4735        TCGA-CN-4736 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5361        TCGA-CN-5363 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-6219        TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6222 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CQ-6229        TCGA-CQ-7065        TCGA-CQ-7068        TCGA-CV-5430 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5436 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6939 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7429        TCGA-CV-7430 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434        TCGA-CV-7435 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440        TCGA-CX-7085 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-DQ-7591        TCGA-DQ-7592 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7632 
"NEUROD6 WILD-TYPE" "NEUROD6 WILD-TYPE" 
D91V5, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               4               113
  CLUS_2               1                92
  CLUS_3               2                87
D91V6, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               1                96
  CLUS_2               2                82
  CLUS_3               4               114
D91V7, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               3               119
  CLUS_3               2                91
D91V8, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               0                11
  CLUS_3               4               177

Clustering(92) Variable = DPP10 MUTATION ANALYSIS
D92V1, multiclass
D92V2, multiclass
D92V3, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             5              68
  CLUS_2             4              48
  CLUS_3             2              25
  CLUS_4             0              56
D92V4, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             5              73
  CLUS_3             2              16
D92V5, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             9             108
  CLUS_2             2              91
  CLUS_3             3              86
D92V6, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             2              82
  CLUS_3            10             108
D92V7, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            12             110
  CLUS_3             1              92
D92V8, multiclass
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              10
  CLUS_3            13             168

Clustering(93) Variable = DPPA4 MUTATION ANALYSIS
D93V1, multiclass
D93V2, multiclass
D93V3, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             3              49
  CLUS_3             1              26
  CLUS_4             1              55
D93V4, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             0              78
  CLUS_3             0              18
D93V5, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             5             112
  CLUS_2             0              93
  CLUS_3             2              87
D93V6, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             1              96
  CLUS_2             0              84
  CLUS_3             6             112
D93V7, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             119
  CLUS_3             1              92
D93V8, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             5             176

Clustering(94) Variable = EPDR1 MUTATION ANALYSIS
D94V1, multiclass
D94V2, multiclass
D94V3, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             1              51
  CLUS_3             0              27
  CLUS_4             3              53
D94V4, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              77
  CLUS_3             0              18
D94V5, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             3             114
  CLUS_2             3              90
  CLUS_3             0              89
D94V6, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             3              94
  CLUS_2             1              83
  CLUS_3             2             116
D94V7, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             119
  CLUS_3             2              91
D94V8, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              11
  CLUS_3             4             177
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
