GDAC_MergedClusteringPipeline Execution Log 4:53 PM Thu May 2, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/3141569/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/3140979/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 mergedfile LAML-TB
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/3140710/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LAML-TB/3140712/3.GDAC_selectBestcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/3140731/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LAML-TB/3140732/3.GDAC_selectBestcluster.Finished/LAML-TB.bestclus.txt
Execution Times:
Submitted: 16:53:49 02-05-13
Completed:
Elapsed: 00 hrs 04 mins 57 secs

step 1. GDAC_mergedClustering [id: 397370] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/3141569/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/3140979/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
mergedfile LAML-TB
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/3140710/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LAML-TB/3140712/3.GDAC_selectBestcluster.Finished/LAML-TB.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LAML-TB/3140731/3.GDAC_CNMFselectcluster.Finished/LAML-TB.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LAML-TB/3140732/3.GDAC_selectBestcluster.Finished/LAML-TB.bestclus.txt
Output Files:
 LAML-TB.transferedmergedcluster.txt
 .lsf.out
 LAML-TB.mergedcluster.txt
 stdout.txt
Execution Times:
Submitted: 16:53:52 02-05-13
Completed: 16:57:13 02-05-13
Elapsed: 00 hrs 03 mins 20 secs

step 2. GDAC_mergedReport [id: 397371]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster LAML-TB.transferedmergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 16:53:52 02-05-13
Completed: 16:58:46 02-05-13
Elapsed: 00 hrs 04 mins 54 secs