ClinicalAnalysisAllGenes_new1 data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/LAML-TB/3140714/0.GDAC_MethylationPreprocess.Finished/LAML-TB.meth.for_correlation.filtered_data.txt |
ClinicalAnalysisAllGenes_new1 clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LAML-TB/3132663/1.GDAC_clinicalDataPicker.Finished/LAML-TB.clin.merged.picked.txt |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff p | 1 |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff fdr | 0.05 |
ClinicalAnalysisAllGenesReport_nozzle2 max table rows | 10 |
ClinicalAnalysisAllGenesReport_nozzle2 nozzle ver | Nozzle.R1 |
ClinicalAnalysisAllGenesReport_nozzle2 options | METHYLATION |
Execution Times: | |
Submitted: | 14:15:41 02-05-13 |
Completed: | |
Elapsed: | 00 hrs 08 mins 36 secs |
step 1. ClinicalAnalysisAllGenes_new [id: 395900] Associate individual gene expression profiles to clinical parameters by survival test, t-test, correlation test, or ANOVA test
urn:lsid:broadinstitute.org:cancer.genome.analysis:00333:14
data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/LAML-TB/3140714/0.GDAC_MethylationPreprocess.Finished/LAML-TB.meth.for_correlation.filtered_data.txt |
clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LAML-TB/3132663/1.GDAC_clinicalDataPicker.Finished/LAML-TB.clin.merged.picked.txt |
genes filtered by list | |
genes filtered by variance | ALL |
samples filtered by list | |
features used | ALL |
output name | |
job description |
Execution Times: | |
Submitted: | 14:15:45 02-05-13 |
Completed: | 14:23:13 02-05-13 |
Elapsed: | 00 hrs 07 mins 27 secs |
step 2. ClinicalAnalysisAllGenesReport_nozzle [id: 395901] Generate a report to summarize the results from ClinicalAnalysisAllGenes module
urn:lsid:broadinstitute.org:cancer.genome.analysis:00334:29
all result file | LAML-TB.meth.for_correlation.filtered_data.clinical.results.txt |
RData file | LAML-TB.meth.for_correlation.filtered_data.analysis.results.RData |
expression file | LAML-TB.meth.for_correlation.filtered_data.exprdata.gct |
clinical file | LAML-TB.clin.merged.picked.clindata.txt |
cutoff p | 1 |
cutoff fdr | 0.05 |
max table rows | 10 |
nozzle ver | Nozzle.R1 |
options | METHYLATION |
report title | |
job description |
Output Files: | |
table1.txt | |
supp.table1.txt | |
nozzle.html | |
table5.txt | |
V3ex.png | |
V2ex.pdf | |
V1ex.pdf | |
table7.txt | |
V2ex.png | |
V1ex.png | |
table3.txt | |
nozzle.RData | |
V3ex.pdf | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 14:15:45 02-05-13 |
Completed: | 14:24:17 02-05-13 |
Elapsed: | 00 hrs 08 mins 31 secs |