GDAC_MergedClusteringPipeline Execution Log 4:53 PM Thu May 2, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LIHC-TP/3142841/3.GDAC_CNMFselectcluster.Finished/LIHC-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LIHC-TP/3140974/3.GDAC_CNMFselectcluster.Finished/LIHC-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile LIHC-TP
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LIHC-TP/3140753/3.GDAC_CNMFselectcluster.Finished/LIHC-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LIHC-TP/3140754/3.GDAC_selectBestcluster.Finished/LIHC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LIHC-TP/3140767/3.GDAC_CNMFselectcluster.Finished/LIHC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LIHC-TP/3140774/3.GDAC_selectBestcluster.Finished/LIHC-TP.bestclus.txt
Execution Times:
Submitted: 16:53:50 02-05-13
Completed:
Elapsed: 00 hrs 05 mins 06 secs

step 1. GDAC_mergedClustering [id: 397373] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LIHC-TP/3142841/3.GDAC_CNMFselectcluster.Finished/LIHC-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LIHC-TP/3140974/3.GDAC_CNMFselectcluster.Finished/LIHC-TP.bestclus.txt
mergedfile LIHC-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LIHC-TP/3140753/3.GDAC_CNMFselectcluster.Finished/LIHC-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LIHC-TP/3140754/3.GDAC_selectBestcluster.Finished/LIHC-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/LIHC-TP/3140767/3.GDAC_CNMFselectcluster.Finished/LIHC-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/LIHC-TP/3140774/3.GDAC_selectBestcluster.Finished/LIHC-TP.bestclus.txt
Output Files:
 LIHC-TP.mergedcluster.txt
 LIHC-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 16:53:53 02-05-13
Completed: 16:57:09 02-05-13
Elapsed: 00 hrs 03 mins 15 secs

step 2. GDAC_mergedReport [id: 397374]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster LIHC-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 16:53:53 02-05-13
Completed: 16:58:56 02-05-13
Elapsed: 00 hrs 05 mins 02 secs