
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/410828/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LIHC-TP/3132685/1.GDAC_clinicalDataPicker.Finished/LIHC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LIHC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LIHC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=73, in cluster file=97, common to both=72
[1] 53 72
[1] "Amp Peak  1(1p22.3)"
[1] 3
      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                           20                            52 
      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                           20                            52 
[1] "Amp Peak  2(1q22)"
[1] 3
      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                         56                          16 
      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                         56                          16 
[1] "Amp Peak  3(1q42.3)"
[1] 3
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           47                            25 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           47                            25 
[1] "Amp Peak  4(2p24.1)"
[1] 3
      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                           17                            55 
      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                           17                            55 
[1] "Amp Peak  5(2q33.1)"
[1] 3
      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                           16                            56 
      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                           16                            56 
[1] "Amp Peak  6(3q26.31)"
[1] 3
      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                            15                             57 
      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                            15                             57 
[1] "Amp Peak  7(4q31.3)"
[1] 3
      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            64 
      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            64 
[1] "Amp Peak  8(5p15.33)"
[1] 3
      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                            34                             38 
      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                            34                             38 
[1] "Amp Peak  9(5q35.3)"
[1] 3
      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                           26                            46 
      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                           26                            46 
[1] "Amp Peak 10(6p25.2)"
[1] 3
      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                           30                            42 
      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                           30                            42 
[1] "Amp Peak 11(6p21.1)"
[1] 3
      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                           31                            41 
      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                           31                            41 
[1] "Amp Peak 12(6q12)"
[1] 3
      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                         23                          49 
      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                         23                          49 
[1] "Amp Peak 13(7q21.2)"
[1] 3
      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                           27                            45 
      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                           27                            45 
[1] "Amp Peak 14(8q13.1)"
[1] 3
      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                           37                            35 
      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                           37                            35 
[1] "Amp Peak 15(8q24.13)"
[1] 3
      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                            43                             29 
      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                            43                             29 
[1] "Amp Peak 16(10p15.1)"
[1] 3
      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                            14                             58 
      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                            14                             58 
[1] "Amp Peak 17(11q13.3)"
[1] 3
      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                            12                             60 
      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                            12                             60 
[1] "Amp Peak 18(12q23.1)"
[1] 3
      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                            13                             59 
      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                            13                             59 
[1] "Amp Peak 19(13q32.3)"
[1] 3
      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                            15                             57 
      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                            15                             57 
[1] "Amp Peak 20(15q21.3)"
[1] 3
      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                            12                             60 
      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                            12                             60 
[1] "Amp Peak 21(15q26.3)"
[1] 3
      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                            12                             60 
      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                            12                             60 
[1] "Amp Peak 22(17p11.2)"
[1] 3
      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                            11                             61 
      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                            11                             61 
[1] "Amp Peak 23(17q23.1)"
[1] 3
      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                            34                             38 
      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                            34                             38 
[1] "Amp Peak 24(17q25.3)"
[1] 3
      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                            36                             36 
      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                            36                             36 
[1] "Amp Peak 25(19q13.11)"
[1] 3
      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                             23                              49 
      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                             23                              49 
[1] "Amp Peak 26(20q13.13)"
[1] 3
      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                             24                              48 
      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                             24                              48 
[1] "Del Peak  1(1p36.32)"
[1] 3
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                            35                             37 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                            35                             37 
[1] "Del Peak  2(2q22.1)"
[1] 3
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                            7                            65 
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                            7                            65 
[1] "Del Peak  3(2q37.3)"
[1] 3
      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                           12                            60 
      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                           12                            60 
[1] "Del Peak  4(3p13)"
[1] 3
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                         15                          57 
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                         15                          57 
[1] "Del Peak  5(4q24)"
[1] 3
      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                         33                          39 
      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                         33                          39 
[1] "Del Peak  6(4q35.1)"
[1] 3
      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                           33                            39 
      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                           33                            39 
[1] "Del Peak  7(5q23.1)"
[1] 3
      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                            9                            63 
      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                            9                            63 
[1] "Del Peak  8(6q16.3)"
[1] 3
      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                           25                            47 
      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                           25                            47 
[1] "Del Peak  9(6q26)"
[1] 3
      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                         27                          45 
      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                         27                          45 
[1] "Del Peak 10(8p23.2)"
[1] 3
      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                           44                            28 
      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                           44                            28 
[1] "Del Peak 11(9p21.3)"
[1] 3
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           31                            41 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           31                            41 
[1] "Del Peak 12(10p15.3)"
[1] 3
      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                             5                             67 
      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                             5                             67 
[1] "Del Peak 13(10q23.31)"
[1] 3
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             25                              47 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             25                              47 
[1] "Del Peak 14(10q24.33)"
[1] 3
      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                             21                              51 
      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                             21                              51 
[1] "Del Peak 15(11q14.1)"
[1] 3
      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                            15                             57 
      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                            15                             57 
[1] "Del Peak 16(12p12.1)"
[1] 3
      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                            15                             57 
      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                            15                             57 
[1] "Del Peak 17(12q24.33)"
[1] 3
      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                             11                              61 
      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                             11                              61 
[1] "Del Peak 18(13q14.2)"
[1] 3
      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                            34                             38 
      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                            34                             38 
[1] "Del Peak 19(14q23.3)"
[1] 3
      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                            30                             42 
      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                            30                             42 
[1] "Del Peak 20(15q15.1)"
[1] 3
      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                            16                             56 
      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                            16                             56 
[1] "Del Peak 21(16q23.1)"
[1] 3
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                            33                             39 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                            33                             39 
[1] "Del Peak 22(17p12)"
[1] 3
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          44                           28 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          44                           28 
[1] "Del Peak 23(18q21.2)"
[1] 3
      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                            14                             58 
      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                            14                             58 
[1] "Del Peak 24(19p13.3)"
[1] 3
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            18                             54 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            18                             54 
[1] "Del Peak 25(22q12.1)"
[1] 3
      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                            14                             58 
      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                            14                             58 
[1] "Del Peak 26(22q13.32)"
[1] 3
      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                             18                              54 
      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                             18                              54 
[1] "Del Peak 27(Xq27.3)"
[1] 3
      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                           12                            60 
      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                           12                            60 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                     "DAYSTODEATH"                     
 [3] "DAYSTOLASTFOLLOWUP"               "VITALSTATUS"                     
 [5] "DCCUPLOADDATE"                    "PRIMARYSITEOFDESEASE"            
 [7] "GENDER"                           "DATEOFINITIALPATHOLOGICDIAGNOSIS"
 [9] "DAYSTOLASTKNOWNALIVE"             "HISTOLOGICALTYPE"                
[11] "COMPLETENESS.OF.RESECTION"        "BATCHNUMBER"                     

Input Data has 12 rows and 72 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
          NA          352           NA           NA           NA           NA 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
          NA           NA           NA           NA           NA           NA 
TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 
          NA         1144          420            8          252            2 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-5264 TCGA-CC-A1HT 
          NA           NA           NA           NA           NA           NA 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 
           2            3            4         1678           NA           NA 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C 
          NA          693           NA           79           NA          652 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
          NA           NA         2414         2017          601         1628 
TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J 
         203         1036          183          887           NA          129 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
         110          111           60           NA           97           13 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3I1 TCGA-FV-A3R3 TCGA-G3-A25S 
          NA           NA           NA           NA            4           37 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y 
        1175         1231          434          390         1359           NA 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
         269          253          192          179          136           27 
Variable 1:'AGE':	nDistinctValues=38,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                       "GENDER"                   
[3] "COMPLETENESS.OF.RESECTION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 72 columns, 1 survival variables, and 3 non-survival variables.
AGE, nv=38, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p22.3)
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P22.3) CNV       12  7
  AMP PEAK  1(1P22.3) WILD-TYPE 28 19
      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                           19                            47 
      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                            7                            19 
$`AMP PEAK  1(1P22.3) CNV`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A216 TCGA-BC-A217 
       37.32        46.78        27.52         2.99        37.61        13.81 
TCGA-CC-5263 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A119 TCGA-DD-A11A 
        4.24         0.10        55.17        37.74         7.33         2.60 
TCGA-DD-A11C TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-EP-A2KB TCGA-G3-A25S TCGA-G3-A25W 
       21.44        34.06        29.16         1.97         1.22        12.82 
TCGA-G3-A3CK 
        0.89 

$`AMP PEAK  1(1P22.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10X TCGA-BC-A10Y 
       48.99        11.57        10.13        27.52        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 
        1.12        69.57         5.03         0.26         8.28         0.07 
TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11B 
        0.07         0.13        83.57        53.29        22.78         0.46 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.25        90.67        79.36        66.31        19.76        53.52 
TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
        6.67         6.02        13.64         4.24         3.62         3.65 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR 
        0.62         3.19         0.43        22.85        14.40        19.07 
TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Y 
        0.13        38.63        40.47        14.27        44.68        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
        8.84         8.32         6.31         5.88         4.47 

      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                        55.17                         90.67 
      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                        13.81                         11.57 
[1] "0.1 - 55.2 (13.8)" "0.1 - 90.7 (11.6)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK  1(1P22.3) CNV"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  1(1P22.3) CNV"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK  1(1P22.3) CNV"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  1(1P22.3) CNV"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK  1(1P22.3) CNV"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  1(1P22.3) CNV"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  1(1P22.3) CNV" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  1(1P22.3) WILD-TYPE"       "AMP PEAK  1(1P22.3) CNV" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) CNV          7   13
  AMP PEAK  1(1P22.3) WILD-TYPE   18   34
        clus
vv       AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE
  FEMALE                       7                            18
  MALE                        13                            34
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  1(1P22.3) CNV       12  4  1  3
  AMP PEAK  1(1P22.3) WILD-TYPE 38  4  0  5
D1V4, multiclass
    clus
vv   AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE
  R0                      12                            38
  R1                       4                             4
  R2                       1                             0
  RX                       3                             5

Clustering(2) Variable = Amp Peak  2(1q22)
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1Q22) CNV       31 20
  AMP PEAK  2(1Q22) WILD-TYPE  9  6
      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                         51                          15 
      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                         20                           6 
$`AMP PEAK  2(1Q22) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10Y 
       37.32        10.13        27.52        27.52         2.99        23.34 
TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 
        1.12         5.03        37.61        13.81         8.28         0.07 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 
        4.24         0.07         0.10         0.13        55.17        37.74 
TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C 
       83.57        22.78         7.33         2.60         0.46        21.44 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EE TCGA-DD-A1EH 
       51.25        90.67        79.36        66.31         6.67        34.06 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
       29.16        13.64         4.24         3.62         3.65         1.97 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 
        0.62         3.19         0.43        14.40        19.07         0.13 
TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
        1.22        40.47        12.82        44.68        14.86         8.84 
TCGA-G3-A3CG TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.32         4.47         0.89 

$`AMP PEAK  2(1Q22) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A3KF 
       48.99        11.57        46.78        25.32        69.57         0.26 
TCGA-DD-A116 TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI TCGA-ES-A2HS TCGA-G3-A25T 
       53.29        19.76        53.52         6.02        22.85        38.63 
TCGA-G3-A25V TCGA-G3-A3CH TCGA-G3-A3CI 
       14.27         6.31         5.88 

      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                       0.07                        0.26 
      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                      90.67                       69.57 
      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                       8.84                       22.85 
[1] "0.1 - 90.7 (8.8)"  "0.3 - 69.6 (22.9)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
      "AMP PEAK  2(1Q22) CNV" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK  2(1Q22) WILD-TYPE"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
      "AMP PEAK  2(1Q22) CNV"       "AMP PEAK  2(1Q22) CNV" 
[1] "hr=" "1.4"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) CNV         18   38
  AMP PEAK  2(1Q22) WILD-TYPE    7    9
        clus
vv       AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE
  FEMALE                    18                           7
  MALE                      38                           9
                             vv
clus                          R0 R1 R2 RX
  AMP PEAK  2(1Q22) CNV       37  6  1  7
  AMP PEAK  2(1Q22) WILD-TYPE 13  2  0  1
D2V4, multiclass
    clus
vv   AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE
  R0                    37                          13
  R1                     6                           2
  R2                     1                           0
  RX                     7                           1

Clustering(3) Variable = Amp Peak  3(1q42.3)
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(1Q42.3) CNV       26 17
  AMP PEAK  3(1Q42.3) WILD-TYPE 14  9
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           43                            23 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           17                             9 
$`AMP PEAK  3(1Q42.3) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A112 
       37.32        10.13        27.52        27.52        23.34         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MC 
       37.61        13.81         8.28         4.24         0.07         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       55.17        37.74        22.78         7.33         2.60         0.46 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EJ 
       51.25        90.67        79.36         6.67        34.06        29.16 
TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
       13.64         4.24         3.62         3.65         1.97         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S 
        3.19         0.43        14.40        19.07         0.13         1.22 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CJ 
       12.82        44.68        14.86         8.84         8.32         4.47 
TCGA-G3-A3CK 
        0.89 

$`AMP PEAK  3(1Q42.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        11.57        46.78         2.99        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-A3MB TCGA-DD-A115 TCGA-DD-A116 
       69.57         0.26         0.07         0.10        83.57        53.29 
TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI TCGA-ES-A2HS 
       21.44        66.31        19.76        53.52         6.02        22.85 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A3CH TCGA-G3-A3CI 
       38.63        40.47        14.27         6.31         5.88 

      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                         0.07                          0.07 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                        90.67                         83.57 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                         8.84                         21.44 
[1] "0.1 - 90.7 (8.8)"  "0.1 - 83.6 (21.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
[1] "hr=" "1.5"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) CNV         15   32
  AMP PEAK  3(1Q42.3) WILD-TYPE   10   15
        clus
vv       AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                      15                            10
  MALE                        32                            15
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  3(1Q42.3) CNV       32  5  1  5
  AMP PEAK  3(1Q42.3) WILD-TYPE 18  3  0  3
D3V4, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  R0                      32                            18
  R1                       5                             3
  R2                       1                             0
  RX                       5                             3

Clustering(4) Variable = Amp Peak  4(2p24.1)
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(2P24.1) CNV        7  9
  AMP PEAK  4(2P24.1) WILD-TYPE 33 17
      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                           16                            50 
      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                            9                            17 
$`AMP PEAK  4(2P24.1) CNV`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-CC-5263 TCGA-DD-A113 
       48.99        37.32        10.13        27.52         4.24        55.17 
TCGA-DD-A115 TCGA-DD-A11A TCGA-DD-A1E9 TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A2KA 
       83.57         2.60        90.67        29.16        13.64         3.65 
TCGA-ES-A2HS TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25Z 
       22.85        38.63        12.82         8.84 

$`AMP PEAK  4(2P24.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y 
       11.57        46.78        27.52         2.99        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF 
        1.12        69.57         5.03        37.61        13.81         0.26 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 
        8.28         0.07         0.07         0.10         0.13        37.74 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
       53.29        22.78         7.33         0.46        21.44        51.25 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH 
       79.36        66.31        19.76        53.52         6.67        34.06 
TCGA-DD-A1EI TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        6.02         4.24         3.62         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25U 
        0.43        14.40        19.07         0.13         1.22        40.47 
TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       14.27        44.68        14.86         8.32         6.31         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK 
        4.47         0.89 

      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                         2.60                          0.07 
      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                        90.67                         79.36 
      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                       25.185                         8.300 
[1] "2.6 - 90.7 (25.2)" "0.1 - 79.4 (8.3)" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  4(2P24.1) CNV"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  4(2P24.1) CNV"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  4(2P24.1) CNV"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  4(2P24.1) CNV"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  4(2P24.1) CNV"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  4(2P24.1) CNV"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  4(2P24.1) WILD-TYPE"       "AMP PEAK  4(2P24.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  4(2P24.1) CNV" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) CNV          8    9
  AMP PEAK  4(2P24.1) WILD-TYPE   17   38
        clus
vv       AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE
  FEMALE                       8                            17
  MALE                         9                            38
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  4(2P24.1) CNV       12  3  0  2
  AMP PEAK  4(2P24.1) WILD-TYPE 38  5  1  6
D4V4, multiclass
    clus
vv   AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE
  R0                      12                            38
  R1                       3                             5
  R2                       0                             1
  RX                       2                             6

Clustering(5) Variable = Amp Peak  5(2q33.1)
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(2Q33.1) CNV        9  7
  AMP PEAK  5(2Q33.1) WILD-TYPE 31 19
      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                           16                            50 
      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                            7                            19 
$`AMP PEAK  5(2Q33.1) CNV`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10Y TCGA-BC-A217 TCGA-DD-A113 
       48.99        37.32        10.13        23.34        13.81        55.17 
TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A2KA TCGA-ES-A2HS 
       21.44        90.67        29.16        13.64         3.65        22.85 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25Z 
        1.22        38.63        12.82         8.84 

$`AMP PEAK  5(2Q33.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       11.57        46.78        27.52        27.52         2.99        25.32 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG 
        1.12        69.57         5.03        37.61         0.26         8.28 
TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 
        0.07         4.24         0.07         0.10         0.13        37.74 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       83.57        53.29        22.78         7.33         2.60         0.46 
TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       51.25        79.36        66.31        19.76        53.52         6.67 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC 
       34.06         6.02         4.24         3.62         1.97         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25U 
        3.19         0.43        14.40        19.07         0.13        40.47 
TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       14.27        44.68        14.86         8.32         6.31         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK 
        4.47         0.89 

      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                         1.22                          0.07 
      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                        90.67                         83.57 
      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                       22.145                         7.805 
[1] "1.2 - 90.7 (22.1)" "0.1 - 83.6 (7.8)" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  5(2Q33.1) CNV"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  5(2Q33.1) CNV"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  5(2Q33.1) CNV"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  5(2Q33.1) CNV"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  5(2Q33.1) CNV"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK  5(2Q33.1) CNV"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  5(2Q33.1) WILD-TYPE"       "AMP PEAK  5(2Q33.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK  5(2Q33.1) CNV" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q33.1) CNV          9    7
  AMP PEAK  5(2Q33.1) WILD-TYPE   16   40
        clus
vv       AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE
  FEMALE                       9                            16
  MALE                         7                            40
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  5(2Q33.1) CNV       12  3  0  1
  AMP PEAK  5(2Q33.1) WILD-TYPE 38  5  1  7
D5V4, multiclass
    clus
vv   AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE
  R0                      12                            38
  R1                       3                             5
  R2                       0                             1
  RX                       1                             7

Clustering(6) Variable = Amp Peak  6(3q26.31)
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(3Q26.31) CNV        7  8
  AMP PEAK  6(3Q26.31) WILD-TYPE 33 18
      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                            15                             51 
      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                             8                             18 
$`AMP PEAK  6(3Q26.31) CNV`
TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A217 TCGA-BC-A3KG 
       10.13        27.52        23.34         1.12        13.81         8.28 
TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11C TCGA-DD-A1EJ TCGA-DD-A1EL 
        0.07        37.74        83.57        21.44        29.16        13.64 
TCGA-EP-A2KA TCGA-ES-A2HS TCGA-G3-A25X 
        3.65        22.85        44.68 

$`AMP PEAK  6(3Q26.31) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        11.57        37.32        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF TCGA-CC-5258 
       25.32        69.57         5.03        37.61         0.26         0.07 
TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 
        4.24         0.10         0.13        55.17        53.29        22.78 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        7.33         2.60         0.46        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI 
       66.31        19.76        53.52         6.67        34.06         6.02 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        4.24         3.62         1.97         0.62         3.19         0.43 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U 
       14.40        19.07         0.13         1.22        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       14.27        12.82        14.86         8.84         8.32         6.31 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        5.88         4.47         0.89 

      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                          0.07                           0.07 
      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                         83.57                          90.67 
      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                         21.44                           8.84 
[1] "0.1 - 83.6 (21.4)" "0.1 - 90.7 (8.8)" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK  6(3Q26.31) CNV"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK  6(3Q26.31) CNV"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK  6(3Q26.31) CNV"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  6(3Q26.31) WILD-TYPE"       "AMP PEAK  6(3Q26.31) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK  6(3Q26.31) CNV" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.5"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) CNV          6    9
  AMP PEAK  6(3Q26.31) WILD-TYPE   19   38
        clus
vv       AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE
  FEMALE                        6                             19
  MALE                          9                             38
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  6(3Q26.31) CNV       13  1  0  1
  AMP PEAK  6(3Q26.31) WILD-TYPE 37  7  1  7
D6V4, multiclass
    clus
vv   AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE
  R0                       13                             37
  R1                        1                              7
  R2                        0                              1
  RX                        1                              7

Clustering(7) Variable = Amp Peak  7(4q31.3)
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  7(4Q31.3) CNV        5  3
  AMP PEAK  7(4Q31.3) WILD-TYPE 35 23
      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            58 
      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                            3                            23 
$`AMP PEAK  7(4Q31.3) CNV`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10Y TCGA-DD-A115 TCGA-DD-A1EC TCGA-EP-A2KA 
       11.57        10.13        23.34        83.57        19.76         3.65 
TCGA-G3-A25X TCGA-G3-A3CG 
       44.68         8.32 

$`AMP PEAK  7(4Q31.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        37.32        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 
       25.32         1.12        69.57         5.03        37.61        13.81 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB 
        0.26         8.28         0.07         4.24         0.07         0.10 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.13        55.17        37.74        53.29        22.78         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        2.60         0.46        21.44        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ 
       66.31        53.52         6.67        34.06         6.02        29.16 
TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       13.64         4.24         3.62         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S 
        0.43        22.85        14.40        19.07         0.13         1.22 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z 
       38.63        40.47        14.27        12.82        14.86         8.84 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        6.31         5.88         4.47         0.89 

      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                         3.65                          0.07 
      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                        83.57                         90.67 
      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                       15.665                        13.230 
[1] "3.6 - 83.6 (15.7)" "0.1 - 90.7 (13.2)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  7(4Q31.3) CNV" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  7(4Q31.3) WILD-TYPE"       "AMP PEAK  7(4Q31.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4Q31.3) CNV          3    5
  AMP PEAK  7(4Q31.3) WILD-TYPE   22   42
        clus
vv       AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE
  FEMALE                       3                            22
  MALE                         5                            42
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  7(4Q31.3) CNV        6  2  0  0
  AMP PEAK  7(4Q31.3) WILD-TYPE 44  6  1  8
D7V4, multiclass
    clus
vv   AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE
  R0                       6                            44
  R1                       2                             6
  R2                       0                             1
  RX                       0                             8

Clustering(8) Variable = Amp Peak  8(5p15.33)
D8V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  8(5P15.33) CNV       19 13
  AMP PEAK  8(5P15.33) WILD-TYPE 21 13
      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                            32                             34 
      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                            13                             13 
$`AMP PEAK  8(5P15.33) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10W TCGA-BC-A10Z TCGA-BC-A216 TCGA-BC-A217 
       37.32        10.13         2.99         1.12        37.61        13.81 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A115 
        8.28         0.07         4.24         0.10         0.13        83.57 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
       53.29        22.78         2.60        51.25        90.67        79.36 
TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        6.67         6.02        13.64         1.97         0.62         3.19 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25X 
       14.40        19.07         1.22        38.63        12.82        44.68 
TCGA-G3-A3CG TCGA-G3-A3CJ 
        8.32         4.47 

$`AMP PEAK  8(5P15.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X 
       48.99        11.57        46.78        27.52        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A3KF TCGA-CC-A3MA TCGA-DD-A113 
       23.34        69.57         5.03         0.26         0.07        55.17 
TCGA-DD-A114 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EC 
       37.74         7.33         0.46        21.44        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
       53.52        34.06        29.16         4.24         3.62         3.65 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A3R3 TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25Y 
        0.43        22.85         0.13        40.47        14.27        14.86 
TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK 
        8.84         6.31         5.88         0.89 

      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                          0.07                           0.07 
      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                         90.67                          69.57 
      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                         9.225                         17.310 
[1] "0.1 - 90.7 (9.2)"  "0.1 - 69.6 (17.3)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
      "AMP PEAK  8(5P15.33) CNV"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  8(5P15.33) WILD-TYPE"       "AMP PEAK  8(5P15.33) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK  8(5P15.33) CNV" "AMP PEAK  8(5P15.33) WILD-TYPE" 
[1] "hr=" "1"  
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(5P15.33) CNV         11   23
  AMP PEAK  8(5P15.33) WILD-TYPE   14   24
        clus
vv       AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE
  FEMALE                       11                             14
  MALE                         23                             24
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  8(5P15.33) CNV       24  4  0  4
  AMP PEAK  8(5P15.33) WILD-TYPE 26  4  1  4
D8V4, multiclass
    clus
vv   AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE
  R0                       24                             26
  R1                        4                              4
  R2                        0                              1
  RX                        4                              4

Clustering(9) Variable = Amp Peak  9(5q35.3)
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  9(5Q35.3) CNV       13 12
  AMP PEAK  9(5Q35.3) WILD-TYPE 27 14
      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                           25                            41 
      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                           12                            14 
$`AMP PEAK  9(5Q35.3) CNV`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A216 TCGA-CC-5263 
       37.32        27.52         2.99         5.03        37.61         4.24 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.10         0.13        83.57        53.29        22.78         7.33 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EE TCGA-EP-A2KB TCGA-EP-A2KC 
       51.25        90.67        79.36         6.67         1.97         0.62 
TCGA-EP-A3JL TCGA-ES-A2HT TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25X 
        3.19        14.40         1.22        38.63        12.82        44.68 
TCGA-G3-A3CG 
        8.32 

$`AMP PEAK  9(5Q35.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X 
       48.99        11.57        10.13        46.78        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
       23.34         1.12        69.57        13.81         0.26         8.28 
TCGA-CC-5258 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A11A TCGA-DD-A11B 
        0.07         0.07        55.17        37.74         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EI 
       21.44        66.31        19.76        53.52        34.06         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3RK 
       29.16        13.64         4.24         3.62         3.65         0.43 
TCGA-ES-A2HS TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25Y 
       22.85        19.07         0.13        40.47        14.27        14.86 
TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.84         6.31         5.88         4.47         0.89 

      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                        90.67                         69.57 
      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                        12.82                         13.64 
[1] "0.1 - 90.7 (12.8)" "0.1 - 69.6 (13.6)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK  9(5Q35.3) CNV"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK  9(5Q35.3) CNV" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  9(5Q35.3) WILD-TYPE"       "AMP PEAK  9(5Q35.3) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(5Q35.3) CNV          7   19
  AMP PEAK  9(5Q35.3) WILD-TYPE   18   28
        clus
vv       AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE
  FEMALE                       7                            18
  MALE                        19                            28
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  9(5Q35.3) CNV       17  5  1  1
  AMP PEAK  9(5Q35.3) WILD-TYPE 33  3  0  7
D9V4, multiclass
    clus
vv   AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE
  R0                      17                            33
  R1                       5                             3
  R2                       1                             0
  RX                       1                             7

Clustering(10) Variable = Amp Peak 10(6p25.2)
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(6P25.2) CNV       20  9
  AMP PEAK 10(6P25.2) WILD-TYPE 20 17
      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                           29                            37 
      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                            9                            17 
$`AMP PEAK 10(6P25.2) CNV`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 
       11.57        10.13        27.52         5.03        37.61        13.81 
TCGA-BC-A3KG TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A118 
        8.28         4.24         0.10         0.13        37.74        22.78 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EJ 
        7.33         2.60        21.44         6.67        34.06        29.16 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A3R3 TCGA-G3-A25S 
        3.65         1.97         0.62        22.85         0.13         1.22 
TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CK 
       40.47        44.68        14.86         8.32         0.89 

$`AMP PEAK 10(6P25.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X 
       48.99        37.32        46.78        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-A3MA 
       23.34         1.12        69.57         0.26         0.07         0.07 
TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 
       55.17        83.57        53.29         0.46        51.25        90.67 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI TCGA-DD-A1EL 
       79.36        66.31        19.76        53.52         6.02        13.64 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR 
        4.24         3.62         3.19         0.43        14.40        19.07 
TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI 
       38.63        14.27        12.82         8.84         6.31         5.88 
TCGA-G3-A3CJ 
        4.47 

      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                        44.68                         90.67 
      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                         8.32                         14.40 
[1] "0.1 - 44.7 (8.3)"  "0.1 - 90.7 (14.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 10(6P25.2) CNV" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 10(6P25.2) CNV"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 10(6P25.2) WILD-TYPE"       "AMP PEAK 10(6P25.2) CNV" 
[1] "hr=" "1.6"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P25.2) CNV         11   19
  AMP PEAK 10(6P25.2) WILD-TYPE   14   28
        clus
vv       AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE
  FEMALE                      11                            14
  MALE                        19                            28
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 10(6P25.2) CNV       22  4  1  3
  AMP PEAK 10(6P25.2) WILD-TYPE 28  4  0  5
D10V4, multiclass
    clus
vv   AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE
  R0                      22                            28
  R1                       4                             4
  R2                       1                             0
  RX                       3                             5

Clustering(11) Variable = Amp Peak 11(6p21.1)
D11V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 11(6P21.1) CNV       19 11
  AMP PEAK 11(6P21.1) WILD-TYPE 21 15
      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                           30                            36 
      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                           11                            15 
$`AMP PEAK 11(6P21.1) CNV`
TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A216 TCGA-BC-A217 
       27.52        27.52        23.34         1.12        37.61        13.81 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 
        0.26         8.28         4.24         0.10         0.13        37.74 
TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A11D 
       83.57        22.78         7.33         2.60        21.44        51.25 
TCGA-DD-A1EB TCGA-DD-A1EE TCGA-DD-A1EH TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
       66.31         6.67        34.06         3.65         1.97         0.62 
TCGA-ES-A2HS TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A3CG TCGA-G3-A3CK 
       22.85         1.22        40.47        44.68         8.32         0.89 

$`AMP PEAK 11(6P21.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10W 
       48.99        11.57        37.32        10.13        46.78         2.99 
TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A112 TCGA-CC-5258 TCGA-CC-A3MA TCGA-DD-A113 
       25.32        69.57         5.03         0.07         0.07        55.17 
TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED 
       53.29         0.46        90.67        79.36        19.76        53.52 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL 
        6.02        29.16        13.64         4.24         3.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25V 
        0.43        14.40        19.07         0.13        38.63        14.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       12.82        14.86         8.84         6.31         5.88         4.47 

      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                        83.57                         90.67 
      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                       11.065                        13.230 
[1] "0.1 - 83.6 (11.1)" "0.1 - 90.7 (13.2)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 11(6P21.1) CNV"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 11(6P21.1) CNV" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 11(6P21.1) WILD-TYPE"       "AMP PEAK 11(6P21.1) CNV" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(6P21.1) CNV         11   20
  AMP PEAK 11(6P21.1) WILD-TYPE   14   27
        clus
vv       AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE
  FEMALE                      11                            14
  MALE                        20                            27
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 11(6P21.1) CNV       23  4  1  3
  AMP PEAK 11(6P21.1) WILD-TYPE 27  4  0  5
D11V4, multiclass
    clus
vv   AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE
  R0                      23                            27
  R1                       4                             4
  R2                       1                             0
  RX                       3                             5

Clustering(12) Variable = Amp Peak 12(6q12)
D12V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 12(6Q12) CNV       15  8
  AMP PEAK 12(6Q12) WILD-TYPE 25 18
      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                         23                          43 
      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                          8                          18 
$`AMP PEAK 12(6Q12) CNV`
TCGA-BC-A10Q TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5263 TCGA-CC-A3MB 
       37.32        13.81         0.26         8.28         4.24         0.10 
TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A 
        0.13        37.74        83.57        22.78         7.33         2.60 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-EP-A2KB 
       21.44        51.25         6.67        34.06        29.16         1.97 
TCGA-EP-A2KC TCGA-ES-A2HS TCGA-G3-A25U TCGA-G3-A3CG TCGA-G3-A3CK 
        0.62        22.85        40.47         8.32         0.89 

$`AMP PEAK 12(6Q12) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        11.57        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
        2.99        25.32        23.34         1.12        69.57         5.03 
TCGA-BC-A216 TCGA-CC-5258 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A11B 
       37.61         0.07         0.07        55.17        53.29         0.46 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI 
       90.67        79.36        66.31        19.76        53.52         6.02 
TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK 
       13.64         4.24         3.62         3.65         3.19         0.43 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25V 
       14.40        19.07         0.13         1.22        38.63        14.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI 
       12.82        44.68        14.86         8.84         6.31         5.88 
TCGA-G3-A3CJ 
        4.47 

      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                       0.10                        0.07 
      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                      83.57                       90.67 
      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                       8.32                       13.64 
[1] "0.1 - 83.6 (8.3)"  "0.1 - 90.7 (13.6)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "AMP PEAK 12(6Q12) CNV"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "AMP PEAK 12(6Q12) CNV" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"AMP PEAK 12(6Q12) WILD-TYPE"       "AMP PEAK 12(6Q12) CNV" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 12(6Q12) CNV          9   14
  AMP PEAK 12(6Q12) WILD-TYPE   16   33
        clus
vv       AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE
  FEMALE                     9                          16
  MALE                      14                          33
                             vv
clus                          R0 R1 R2 RX
  AMP PEAK 12(6Q12) CNV       18  2  1  2
  AMP PEAK 12(6Q12) WILD-TYPE 32  6  0  6
D12V4, multiclass
    clus
vv   AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE
  R0                    18                          32
  R1                     2                           6
  R2                     1                           0
  RX                     2                           6

Clustering(13) Variable = Amp Peak 13(7q21.2)
D13V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 13(7Q21.2) CNV       15  9
  AMP PEAK 13(7Q21.2) WILD-TYPE 25 17
      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                           24                            42 
      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                            9                            17 
$`AMP PEAK 13(7Q21.2) CNV`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10U TCGA-CC-A3MA TCGA-CC-A3MB 
       48.99        37.32        10.13        27.52         0.07         0.10 
TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE 
       22.78         2.60        51.25        90.67        19.76         6.67 
TCGA-DD-A1EJ TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS 
       29.16         3.62         3.65         0.62         3.19        22.85 
TCGA-FV-A2QR TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A3CG TCGA-G3-A3CJ 
       19.07        38.63        14.27        44.68         8.32         4.47 

$`AMP PEAK 13(7Q21.2) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y 
       11.57        46.78        27.52         2.99        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF 
        1.12        69.57         5.03        37.61        13.81         0.26 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 
        8.28         0.07         4.24         0.13        55.17        37.74 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EA 
       83.57        53.29         7.33         0.46        21.44        79.36 
TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A12J 
       66.31        53.52        34.06         6.02        13.64         4.24 
TCGA-EP-A2KB TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25U 
        1.97         0.43        14.40         0.13         1.22        40.47 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK 
       12.82        14.86         8.84         6.31         5.88         0.89 

      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                         0.07                          0.07 
      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                        90.67                         83.57 
      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                       16.670                        12.195 
[1] "0.1 - 90.7 (16.7)" "0.1 - 83.6 (12.2)"
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK 13(7Q21.2) CNV"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 13(7Q21.2) CNV"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK 13(7Q21.2) CNV"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 13(7Q21.2) CNV"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "AMP PEAK 13(7Q21.2) CNV"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 13(7Q21.2) CNV"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 13(7Q21.2) WILD-TYPE"       "AMP PEAK 13(7Q21.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK 13(7Q21.2) CNV" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) CNV         11   16
  AMP PEAK 13(7Q21.2) WILD-TYPE   14   31
        clus
vv       AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE
  FEMALE                      11                            14
  MALE                        16                            31
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 13(7Q21.2) CNV       18  4  0  3
  AMP PEAK 13(7Q21.2) WILD-TYPE 32  4  1  5
D13V4, multiclass
    clus
vv   AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE
  R0                      18                            32
  R1                       4                             4
  R2                       0                             1
  RX                       3                             5

Clustering(14) Variable = Amp Peak 14(8q13.1)
D14V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 14(8Q13.1) CNV       23 11
  AMP PEAK 14(8Q13.1) WILD-TYPE 17 15
      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                           34                            32 
      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                           11                            15 
$`AMP PEAK 14(8Q13.1) CNV`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A3KF TCGA-CC-5258 
       48.99        46.78        27.52         2.99         0.26         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A 
        0.10         0.13        53.29        22.78         7.33         2.60 
TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL 
       21.44        90.67        19.76         6.67         6.02        13.64 
TCGA-EP-A12J TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        4.24         3.65         1.97         0.62         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X 
       22.85        14.40        38.63        14.27        12.82        44.68 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CJ 
        8.84         8.32         6.31         4.47 

$`AMP PEAK 14(8Q13.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10X TCGA-BC-A10Y 
       11.57        37.32        10.13        27.52        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG 
        1.12        69.57         5.03        37.61        13.81         8.28 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11B 
        4.24         0.07        55.17        37.74        83.57         0.46 
TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EJ 
       51.25        79.36        66.31        53.52        34.06        29.16 
TCGA-EP-A26S TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25Y 
        3.62        19.07         0.13         1.22        40.47        14.86 
TCGA-G3-A3CI TCGA-G3-A3CK 
        5.88         0.89 

      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                         0.07                          0.07 
      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                        90.67                         83.57 
      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                        7.825                        21.205 
[1] "0.1 - 90.7 (7.8)"  "0.1 - 83.6 (21.2)"
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"AMP PEAK 14(8Q13.1) WILD-TYPE"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "AMP PEAK 14(8Q13.1) CNV"       "AMP PEAK 14(8Q13.1) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "AMP PEAK 14(8Q13.1) CNV" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(8Q13.1) CNV          9   28
  AMP PEAK 14(8Q13.1) WILD-TYPE   16   19
        clus
vv       AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE
  FEMALE                       9                            16
  MALE                        28                            19
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 14(8Q13.1) CNV       26  4  1  3
  AMP PEAK 14(8Q13.1) WILD-TYPE 24  4  0  5
D14V4, multiclass
    clus
vv   AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE
  R0                      26                            24
  R1                       4                             4
  R2                       1                             0
  RX                       3                             5

Clustering(15) Variable = Amp Peak 15(8q24.13)
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(8Q24.13) CNV       26 12
  AMP PEAK 15(8Q24.13) WILD-TYPE 14 14
      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                            38                             28 
      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                            12                             14 
$`AMP PEAK 15(8Q24.13) CNV`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A3KF 
       48.99        46.78        27.52        27.52         2.99         0.26 
TCGA-CC-5258 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A116 
        0.07         0.07         0.10         0.13        55.17        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EC 
       22.78         7.33         2.60        21.44        90.67        19.76 
TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A2KA TCGA-EP-A2KB 
        6.67         6.02        13.64         4.24         3.65         1.97 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-G3-A25T 
        0.62         3.19         0.43        22.85        14.40        38.63 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG 
       40.47        14.27        12.82        44.68         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CJ 
        6.31         4.47 

$`AMP PEAK 15(8Q24.13) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       11.57        37.32        10.13        25.32        23.34         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5263 
       69.57         5.03        37.61        13.81         8.28         4.24 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB 
       37.74        83.57         0.46        51.25        79.36        66.31 
TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-EP-A26S TCGA-FV-A2QR TCGA-FV-A3R3 
       53.52        34.06        29.16         3.62        19.07         0.13 
TCGA-G3-A25S TCGA-G3-A25Y TCGA-G3-A3CI TCGA-G3-A3CK 
        1.22        14.86         5.88         0.89 

      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                          0.07                           0.13 
      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                         90.67                          83.57 
      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                         8.580                         16.965 
[1] "0.1 - 90.7 (8.6)"  "0.1 - 83.6 (17.0)"
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 15(8Q24.13) WILD-TYPE"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 15(8Q24.13) CNV"       "AMP PEAK 15(8Q24.13) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 15(8Q24.13) CNV" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.13) CNV         11   32
  AMP PEAK 15(8Q24.13) WILD-TYPE   14   15
        clus
vv       AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE
  FEMALE                       11                             14
  MALE                         32                             15
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 15(8Q24.13) CNV       29  5  1  4
  AMP PEAK 15(8Q24.13) WILD-TYPE 21  3  0  4
D15V4, multiclass
    clus
vv   AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE
  R0                       29                             21
  R1                        5                              3
  R2                        1                              0
  RX                        4                              4

Clustering(16) Variable = Amp Peak 16(10p15.1)
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(10P15.1) CNV        7  6
  AMP PEAK 16(10P15.1) WILD-TYPE 33 20
      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                            13                             53 
      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                             6                             20 
$`AMP PEAK 16(10P15.1) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A217 TCGA-CC-A3MA TCGA-CC-A3MB 
       37.32        10.13        27.52        13.81         0.07         0.10 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A1EL TCGA-EP-A2KA TCGA-EP-A2KB TCGA-ES-A2HS 
       55.17        37.74        13.64         3.65         1.97        22.85 
TCGA-G3-A25X 
       44.68 

$`AMP PEAK 16(10P15.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        11.57        46.78        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF 
       23.34         1.12        69.57         5.03        37.61         0.26 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 
        8.28         0.07         4.24         0.13        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
       22.78         7.33         2.60         0.46        21.44        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        53.52         6.67 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KC 
       34.06         6.02        29.16         4.24         3.62         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S 
        3.19         0.43        14.40        19.07         0.13         1.22 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z 
       38.63        40.47        14.27        12.82        14.86         8.84 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.32         6.31         5.88         4.47         0.89 

      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                          0.07                           0.07 
      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                         55.17                          90.67 
      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                         13.81                          11.57 
[1] "0.1 - 55.2 (13.8)" "0.1 - 90.7 (11.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 16(10P15.1) CNV"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 16(10P15.1) WILD-TYPE"       "AMP PEAK 16(10P15.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 16(10P15.1) CNV" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
[1] "hr=" "1.5"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(10P15.1) CNV          6    8
  AMP PEAK 16(10P15.1) WILD-TYPE   19   39
        clus
vv       AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE
  FEMALE                        6                             19
  MALE                          8                             39
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 16(10P15.1) CNV       11  2  0  1
  AMP PEAK 16(10P15.1) WILD-TYPE 39  6  1  7
D16V4, multiclass
    clus
vv   AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE
  R0                       11                             39
  R1                        2                              6
  R2                        0                              1
  RX                        1                              7

Clustering(17) Variable = Amp Peak 17(11q13.3)
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(11Q13.3) CNV        8  3
  AMP PEAK 17(11Q13.3) WILD-TYPE 32 23
      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                            11                             55 
      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                             3                             23 
$`AMP PEAK 17(11Q13.3) CNV`
TCGA-BC-4073 TCGA-BC-A10T TCGA-CC-A3MB TCGA-DD-A115 TCGA-DD-A119 TCGA-DD-A11A 
       11.57        27.52         0.10        83.57         7.33         2.60 
TCGA-DD-A1EB TCGA-EP-A2KA TCGA-G3-A25S TCGA-G3-A25W TCGA-G3-A3CG 
       66.31         3.65         1.22        12.82         8.32 

$`AMP PEAK 17(11Q13.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        37.32        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        37.61 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA 
       13.81         0.26         8.28         0.07         4.24         0.07 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11B 
        0.13        55.17        37.74        53.29        22.78         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED 
       21.44        51.25        90.67        79.36        19.76        53.52 
TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J 
        6.67        34.06         6.02        29.16        13.64         4.24 
TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
        3.62         1.97         0.62         3.19         0.43        22.85 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
       14.40        19.07         0.13        38.63        40.47        14.27 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       44.68        14.86         8.84         6.31         5.88         4.47 
TCGA-G3-A3CK 
        0.89 

      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                          0.10                           0.07 
      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                         83.57                          90.67 
      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                          8.32                          14.27 
[1] "0.1 - 83.6 (8.3)"  "0.1 - 90.7 (14.3)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 17(11Q13.3) CNV" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 17(11Q13.3) WILD-TYPE"       "AMP PEAK 17(11Q13.3) CNV" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
[1] "hr=" "1.5"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q13.3) CNV          3    9
  AMP PEAK 17(11Q13.3) WILD-TYPE   22   38
        clus
vv       AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE
  FEMALE                        3                             22
  MALE                          9                             38
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 17(11Q13.3) CNV        6  4  1  1
  AMP PEAK 17(11Q13.3) WILD-TYPE 44  4  0  7
D17V4, multiclass
    clus
vv   AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE
  R0                        6                             44
  R1                        4                              4
  R2                        1                              0
  RX                        1                              7

Clustering(18) Variable = Amp Peak 18(12q23.1)
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(12Q23.1) CNV        9  3
  AMP PEAK 18(12Q23.1) WILD-TYPE 31 23
      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                            12                             54 
      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                             3                             23 
$`AMP PEAK 18(12Q23.1) CNV`
TCGA-BC-A10T TCGA-BC-A216 TCGA-BC-A3KF TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A 
       27.52        37.61         0.26        53.29         7.33         2.60 
TCGA-DD-A11C TCGA-DD-A1EJ TCGA-EP-A2KA TCGA-EP-A3JL TCGA-G3-A25T TCGA-G3-A25X 
       21.44        29.16         3.65         3.19        38.63        44.68 

$`AMP PEAK 18(12Q23.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U 
       48.99        11.57        37.32        10.13        46.78        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
        2.99        25.32        23.34         1.12        69.57         5.03 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB 
       13.81         8.28         0.07         4.24         0.07         0.10 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11B 
        0.13        55.17        37.74        83.57        22.78         0.46 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.25        90.67        79.36        66.31        19.76        53.52 
TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S 
        6.67        34.06         6.02        13.64         4.24         3.62 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR 
        1.97         0.62         0.43        22.85        14.40        19.07 
TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
        0.13         1.22        40.47        14.27        12.82        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.84         8.32         6.31         5.88         4.47         0.89 

      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                          0.26                           0.07 
      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                         53.29                          90.67 
      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                        24.480                         12.195 
[1] "0.3 - 53.3 (24.5)" "0.1 - 90.7 (12.2)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 18(12Q23.1) WILD-TYPE"       "AMP PEAK 18(12Q23.1) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 18(12Q23.1) CNV" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
[1] "hr=" "1.7"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(12Q23.1) CNV          5    8
  AMP PEAK 18(12Q23.1) WILD-TYPE   20   39
        clus
vv       AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE
  FEMALE                        5                             20
  MALE                          8                             39
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 18(12Q23.1) CNV        8  1  1  2
  AMP PEAK 18(12Q23.1) WILD-TYPE 42  7  0  6
D18V4, multiclass
    clus
vv   AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE
  R0                        8                             42
  R1                        1                              7
  R2                        1                              0
  RX                        2                              6

Clustering(19) Variable = Amp Peak 19(13q32.3)
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(13Q32.3) CNV       10  4
  AMP PEAK 19(13Q32.3) WILD-TYPE 30 22
      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                            14                             52 
      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                             4                             22 
$`AMP PEAK 19(13Q32.3) CNV`
TCGA-BC-A10W TCGA-BC-A10Z TCGA-BC-A216 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5263 
        2.99         1.12        37.61         0.26         0.07         4.24 
TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EJ TCGA-DD-A1EL 
        0.07        55.17         2.60        21.44        29.16        13.64 
TCGA-EP-A2KA TCGA-EP-A3JL 
        3.65         3.19 

$`AMP PEAK 19(13Q32.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        11.57        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 
       27.52        25.32        23.34        69.57         5.03        13.81 
TCGA-BC-A3KG TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        8.28         0.10         0.13        37.74        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
       22.78         7.33         0.46        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI 
       66.31        19.76        53.52         6.67        34.06         6.02 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HS 
        4.24         3.62         1.97         0.62         0.43        22.85 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U 
       14.40        19.07         0.13         1.22        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       14.27        12.82        44.68        14.86         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        6.31         5.88         4.47         0.89 

      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                          0.07                           0.10 
      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                         55.17                          90.67 
      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                         3.420                         14.335 
[1] "0.1 - 55.2 (3.4)"  "0.1 - 90.7 (14.3)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 19(13Q32.3) CNV"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 19(13Q32.3) CNV"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 19(13Q32.3) CNV"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 19(13Q32.3) CNV"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 19(13Q32.3) CNV"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 19(13Q32.3) CNV"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 19(13Q32.3) CNV" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"       "AMP PEAK 19(13Q32.3) CNV" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q32.3) CNV          6    9
  AMP PEAK 19(13Q32.3) WILD-TYPE   19   38
        clus
vv       AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE
  FEMALE                        6                             19
  MALE                          9                             38
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 19(13Q32.3) CNV        9  1  0  4
  AMP PEAK 19(13Q32.3) WILD-TYPE 41  7  1  4
D19V4, multiclass
    clus
vv   AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE
  R0                        9                             41
  R1                        1                              7
  R2                        0                              1
  RX                        4                              4

Clustering(20) Variable = Amp Peak 20(15q21.3)
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(15Q21.3) CNV        7  5
  AMP PEAK 20(15Q21.3) WILD-TYPE 33 21
      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                            12                             54 
      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                             5                             21 
$`AMP PEAK 20(15Q21.3) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10Y TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG 
       37.32        10.13        23.34        37.61         0.26         8.28 
TCGA-DD-A115 TCGA-DD-A11C TCGA-EP-A2KA TCGA-ES-A2HS TCGA-G3-A25T TCGA-G3-A25X 
       83.57        21.44         3.65        22.85        38.63        44.68 

$`AMP PEAK 20(15Q21.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        11.57        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5258 
       25.32         1.12        69.57         5.03        13.81         0.07 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 
        4.24         0.07         0.10         0.13        55.17        37.74 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D 
       53.29        22.78         7.33         2.60         0.46        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        53.52         6.67 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S 
       34.06         6.02        29.16        13.64         4.24         3.62 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR 
        1.97         0.62         3.19         0.43        14.40        19.07 
TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
        0.13         1.22        40.47        14.27        12.82        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.84         8.32         6.31         5.88         4.47         0.89 

      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                          0.26                           0.07 
      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                         83.57                          90.67 
      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                        23.095                         10.205 
[1] "0.3 - 83.6 (23.1)" "0.1 - 90.7 (10.2)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 20(15Q21.3) CNV"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 20(15Q21.3) CNV"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 20(15Q21.3) CNV"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 20(15Q21.3) WILD-TYPE"       "AMP PEAK 20(15Q21.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 20(15Q21.3) CNV" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
[1] "hr=" "1.2"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(15Q21.3) CNV          7    5
  AMP PEAK 20(15Q21.3) WILD-TYPE   18   42
        clus
vv       AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE
  FEMALE                        7                             18
  MALE                          5                             42
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 20(15Q21.3) CNV       10  1  0  1
  AMP PEAK 20(15Q21.3) WILD-TYPE 40  7  1  7
D20V4, multiclass
    clus
vv   AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE
  R0                       10                             40
  R1                        1                              7
  R2                        0                              1
  RX                        1                              7

Clustering(21) Variable = Amp Peak 21(15q26.3)
D21V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 21(15Q26.3) CNV        6  5
  AMP PEAK 21(15Q26.3) WILD-TYPE 34 21
      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                            11                             55 
      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                             5                             21 
$`AMP PEAK 21(15Q26.3) CNV`
TCGA-BC-A10Q TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-CC-5263 TCGA-DD-A11A 
       37.32        23.34        13.81         0.26         4.24         2.60 
TCGA-EP-A2KA TCGA-ES-A2HS TCGA-G3-A25T TCGA-G3-A25Y TCGA-G3-A3CH 
        3.65        22.85        38.63        14.86         6.31 

$`AMP PEAK 21(15Q26.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        11.57        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        37.61 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
        8.28         0.07         0.07         0.10         0.13        55.17 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B 
       37.74        83.57        53.29        22.78         7.33         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.44        51.25        90.67        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL 
       53.52         6.67        34.06         6.02        29.16        13.64 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        4.24         3.62         1.97         0.62         3.19         0.43 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V 
       14.40        19.07         0.13         1.22        40.47        14.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ 
       12.82        44.68         8.84         8.32         5.88         4.47 
TCGA-G3-A3CK 
        0.89 

      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                          0.26                           0.07 
      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                         38.63                          90.67 
      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                         13.81                          12.82 
[1] "0.3 - 38.6 (13.8)" "0.1 - 90.7 (12.8)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 21(15Q26.3) CNV"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 21(15Q26.3) CNV"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 21(15Q26.3) CNV"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"       "AMP PEAK 21(15Q26.3) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "AMP PEAK 21(15Q26.3) CNV" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
[1] "hr=" "2.1"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.3) CNV          6    6
  AMP PEAK 21(15Q26.3) WILD-TYPE   19   41
        clus
vv       AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE
  FEMALE                        6                             19
  MALE                          6                             41
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 21(15Q26.3) CNV        9  1  0  1
  AMP PEAK 21(15Q26.3) WILD-TYPE 41  7  1  7
D21V4, multiclass
    clus
vv   AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE
  R0                        9                             41
  R1                        1                              7
  R2                        0                              1
  RX                        1                              7

Clustering(22) Variable = Amp Peak 22(17p11.2)
D22V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 22(17P11.2) CNV        5  4
  AMP PEAK 22(17P11.2) WILD-TYPE 35 22
      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                             9                             57 
      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                             4                             22 
$`AMP PEAK 22(17P11.2) CNV`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5263 TCGA-DD-A11A 
       37.32        27.52         0.26         8.28         4.24         2.60 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-ES-A2HS 
        3.65         1.97        22.85 

$`AMP PEAK 22(17P11.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        11.57        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        37.61 
TCGA-BC-A217 TCGA-CC-5258 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
       13.81         0.07         0.07         0.10         0.13        55.17 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B 
       37.74        83.57        53.29        22.78         7.33         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.44        51.25        90.67        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL 
       53.52         6.67        34.06         6.02        29.16        13.64 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
        4.24         3.62         0.62         3.19         0.43        14.40 
TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
       19.07         0.13         1.22        38.63        40.47        14.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       12.82        44.68        14.86         8.84         8.32         6.31 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        5.88         4.47         0.89 

      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                          0.26                           0.07 
      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                         37.32                          90.67 
      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                          4.24                          13.81 
[1] "0.3 - 37.3 (4.2)"  "0.1 - 90.7 (13.8)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 22(17P11.2) CNV"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 22(17P11.2) CNV"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 22(17P11.2) CNV" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 22(17P11.2) CNV"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 22(17P11.2) WILD-TYPE"       "AMP PEAK 22(17P11.2) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
[1] "hr=" "2.5"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(17P11.2) CNV          6    5
  AMP PEAK 22(17P11.2) WILD-TYPE   19   42
        clus
vv       AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE
  FEMALE                        6                             19
  MALE                          5                             42
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 22(17P11.2) CNV        6  2  0  3
  AMP PEAK 22(17P11.2) WILD-TYPE 44  6  1  5
D22V4, multiclass
    clus
vv   AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE
  R0                        6                             44
  R1                        2                              6
  R2                        0                              1
  RX                        3                              5

Clustering(23) Variable = Amp Peak 23(17q23.1)
D23V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 23(17Q23.1) CNV       17 14
  AMP PEAK 23(17Q23.1) WILD-TYPE 23 12
      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                            31                             35 
      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                            14                             12 
$`AMP PEAK 23(17Q23.1) CNV`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A10Z 
       48.99        37.32        27.52         2.99        23.34         1.12 
TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5263 TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 
        5.03        13.81         4.24         0.13        37.74        83.57 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EI TCGA-DD-A1EJ 
        7.33         2.60        79.36        66.31         6.02        29.16 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A2QR TCGA-G3-A25S 
        3.65         1.97         0.62        22.85        19.07         1.22 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CJ 
       38.63        40.47        12.82        44.68         8.84         4.47 
TCGA-G3-A3CK 
        0.89 

$`AMP PEAK 23(17Q23.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10X TCGA-BC-A110 
       11.57        10.13        46.78        27.52        25.32        69.57 
TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MA TCGA-CC-A3MB 
       37.61         0.26         8.28         0.07         0.07         0.10 
TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
       55.17        53.29        22.78         0.46        21.44        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EL 
       90.67        19.76        53.52         6.67        34.06        13.64 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A3R3 
        4.24         3.62         3.19         0.43        14.40         0.13 
TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       14.27        14.86         8.32         6.31         5.88 

      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                          0.13                           0.07 
      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                         83.57                          90.67 
      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                         12.82                          13.64 
[1] "0.1 - 83.6 (12.8)" "0.1 - 90.7 (13.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 23(17Q23.1) WILD-TYPE"       "AMP PEAK 23(17Q23.1) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 23(17Q23.1) CNV" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 23(17Q23.1) CNV"       "AMP PEAK 23(17Q23.1) CNV" 
[1] "hr=" "1.4"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17Q23.1) CNV         12   22
  AMP PEAK 23(17Q23.1) WILD-TYPE   13   25
        clus
vv       AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE
  FEMALE                       12                             13
  MALE                         22                             25
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 23(17Q23.1) CNV       23  5  1  5
  AMP PEAK 23(17Q23.1) WILD-TYPE 27  3  0  3
D23V4, multiclass
    clus
vv   AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE
  R0                       23                             27
  R1                        5                              3
  R2                        1                              0
  RX                        5                              3

Clustering(24) Variable = Amp Peak 24(17q25.3)
D24V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 24(17Q25.3) CNV       17 16
  AMP PEAK 24(17Q25.3) WILD-TYPE 23 10
      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                            33                             33 
      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                            16                             10 
$`AMP PEAK 24(17Q25.3) CNV`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10Y 
       48.99        37.32        27.52        27.52         2.99        23.34 
TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC 
        1.12         5.03        13.81         4.24         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C 
       37.74        83.57        53.29         7.33         2.60        21.44 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-EP-A2KB TCGA-EP-A2KC 
       79.36        66.31         6.02        29.16         1.97         0.62 
TCGA-ES-A2HS TCGA-FV-A2QR TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25W TCGA-G3-A25X 
       22.85        19.07         1.22        40.47        12.82        44.68 
TCGA-G3-A25Z TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.84         4.47         0.89 

$`AMP PEAK 24(17Q25.3) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A216 
       11.57        10.13        46.78        25.32        69.57        37.61 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A118 
        0.26         8.28         0.07         0.07        55.17        22.78 
TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
        0.46        51.25        90.67        19.76        53.52         6.67 
TCGA-DD-A1EH TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL 
       34.06        13.64         4.24         3.62         3.65         3.19 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25Y 
        0.43        14.40         0.13        38.63        14.27        14.86 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
        8.32         6.31         5.88 

      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                          0.10                           0.07 
      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                         83.57                          90.67 
      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                         13.81                          11.57 
[1] "0.1 - 83.6 (13.8)" "0.1 - 90.7 (11.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-4072                     TCGA-BC-4073 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 24(17Q25.3) WILD-TYPE"       "AMP PEAK 24(17Q25.3) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "AMP PEAK 24(17Q25.3) CNV" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
      "AMP PEAK 24(17Q25.3) CNV"       "AMP PEAK 24(17Q25.3) CNV" 
[1] "hr=" "1.6"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(17Q25.3) CNV         10   26
  AMP PEAK 24(17Q25.3) WILD-TYPE   15   21
        clus
vv       AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE
  FEMALE                       10                             15
  MALE                         26                             21
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 24(17Q25.3) CNV       23  6  1  6
  AMP PEAK 24(17Q25.3) WILD-TYPE 27  2  0  2
D24V4, multiclass
    clus
vv   AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE
  R0                       23                             27
  R1                        6                              2
  R2                        1                              0
  RX                        6                              2

Clustering(25) Variable = Amp Peak 25(19q13.11)
D25V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 25(19Q13.11) CNV       11 11
  AMP PEAK 25(19Q13.11) WILD-TYPE 29 15
      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                             22                              44 
      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                             11                              15 
$`AMP PEAK 25(19Q13.11) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A112 
       37.32        10.13        27.52        23.34         1.12         5.03 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-DD-A113 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A1E9 
       13.81         8.28        55.17        22.78         7.33        90.67 
TCGA-DD-A1EC TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
       19.76         6.02        13.64         3.65         1.97         0.62 
TCGA-EP-A3JL TCGA-ES-A2HS TCGA-G3-A25T TCGA-G3-A25X 
        3.19        22.85        38.63        44.68 

$`AMP PEAK 25(19Q13.11) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        11.57        46.78        27.52         2.99        25.32 
TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA 
       69.57        37.61         0.26         0.07         4.24         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11A 
        0.10         0.13        37.74        83.57        53.29         2.60 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED 
        0.46        21.44        51.25        79.36        66.31        53.52 
TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3RK 
        6.67        34.06        29.16         4.24         3.62         0.43 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V 
       14.40        19.07         0.13         1.22        40.47        14.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       12.82        14.86         8.84         8.32         6.31         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK 
        4.47         0.89 

      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                           0.62                            0.07 
      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                          90.67                           83.57 
      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                         13.725                          12.195 
[1] "0.6 - 90.7 (13.7)" "0.1 - 83.6 (12.2)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
      "AMP PEAK 25(19Q13.11) CNV"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 25(19Q13.11) WILD-TYPE"       "AMP PEAK 25(19Q13.11) CNV" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "AMP PEAK 25(19Q13.11) CNV" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
[1] "hr=" "1.4"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(19Q13.11) CNV         11   12
  AMP PEAK 25(19Q13.11) WILD-TYPE   14   35
        clus
vv       AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE
  FEMALE                        11                              14
  MALE                          12                              35
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 25(19Q13.11) CNV       18  2  1  1
  AMP PEAK 25(19Q13.11) WILD-TYPE 32  6  0  7
D25V4, multiclass
    clus
vv   AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE
  R0                        18                              32
  R1                         2                               6
  R2                         1                               0
  RX                         1                               7

Clustering(26) Variable = Amp Peak 26(20q13.13)
D26V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 26(20Q13.13) CNV       13  8
  AMP PEAK 26(20Q13.13) WILD-TYPE 27 18
      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                             21                              45 
      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                              8                              18 
$`AMP PEAK 26(20Q13.13) CNV`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A217 
       48.99        37.32        10.13        27.52        23.34        13.81 
TCGA-BC-A3KF TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A 
        0.26         0.10         0.13        22.78         7.33         2.60 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-EP-A2KB TCGA-EP-A3JL 
        0.46        21.44        34.06        29.16         1.97         3.19 
TCGA-ES-A2HS TCGA-G3-A25S TCGA-G3-A25W 
       22.85         1.22        12.82 

$`AMP PEAK 26(20Q13.13) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z 
       11.57        46.78        27.52         2.99        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 
       69.57         5.03        37.61         8.28         0.07         4.24 
TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11D 
        0.07        55.17        37.74        83.57        53.29        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        53.52         6.67 
TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC 
        6.02        13.64         4.24         3.62         3.65         0.62 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U 
        0.43        14.40        19.07         0.13        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       14.27        44.68        14.86         8.84         8.32         6.31 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        5.88         4.47         0.89 

      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                           0.10                            0.07 
      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                          48.99                           90.67 
      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                          12.82                           13.64 
[1] "0.1 - 49.0 (12.8)" "0.1 - 90.7 (13.6)"
                     TCGA-BC-4072                      TCGA-BC-4073 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "AMP PEAK 26(20Q13.13) CNV"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
      "AMP PEAK 26(20Q13.13) CNV" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 26(20Q13.13) WILD-TYPE"       "AMP PEAK 26(20Q13.13) CNV" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
[1] "hr=" "1.9"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(20Q13.13) CNV          9   15
  AMP PEAK 26(20Q13.13) WILD-TYPE   16   32
        clus
vv       AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE
  FEMALE                         9                              16
  MALE                          15                              32
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 26(20Q13.13) CNV       13  4  1  4
  AMP PEAK 26(20Q13.13) WILD-TYPE 37  4  0  4
D26V4, multiclass
    clus
vv   AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE
  R0                        13                              37
  R1                         4                               4
  R2                         1                               0
  RX                         4                               4

Clustering(27) Variable = Del Peak  1(1p36.32)
D27V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.32) CNV       17 15
  DEL PEAK  1(1P36.32) WILD-TYPE 23 11
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                            32                             34 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                            15                             11 
$`DEL PEAK  1(1P36.32) CNV`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A217 
       37.32        46.78        27.52         2.99        23.34        13.81 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 
        4.24         0.07         0.10        55.17        53.29        22.78 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 
        7.33         2.60         0.46        21.44        51.25        90.67 
TCGA-DD-A1EB TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK 
       66.31        34.06        29.16         1.97         0.62         0.43 
TCGA-ES-A2HS TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25V TCGA-G3-A25W 
       22.85        19.07         0.13         1.22        14.27        12.82 
TCGA-G3-A25X TCGA-G3-A25Y 
       44.68        14.86 

$`DEL PEAK  1(1P36.32) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        11.57        10.13        27.52        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 
       69.57         5.03        37.61         0.26         8.28         0.07 
TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED 
        0.13        37.74        83.57        79.36        19.76        53.52 
TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
        6.67         6.02        13.64         4.24         3.62         3.65 
TCGA-EP-A3JL TCGA-ES-A2HT TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25Z TCGA-G3-A3CG 
        3.19        14.40        38.63        40.47         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        6.31         5.88         4.47         0.89 

      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                          0.07                           0.07 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                         90.67                          83.57 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                        16.965                          8.580 
[1] "0.1 - 90.7 (17.0)" "0.1 - 83.6 (8.6)" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK  1(1P36.32) CNV" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
[1] "hr=" "1.3"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) CNV         12   23
  DEL PEAK  1(1P36.32) WILD-TYPE   13   24
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                       12                             13
  MALE                         23                             24
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK  1(1P36.32) CNV       22  4  1  6
  DEL PEAK  1(1P36.32) WILD-TYPE 28  4  0  2
D27V4, multiclass
    clus
vv   DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  R0                       22                             28
  R1                        4                              4
  R2                        1                              0
  RX                        6                              2

Clustering(28) Variable = Del Peak  2(2q22.1)
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(2Q22.1) CNV        1  4
  DEL PEAK  2(2Q22.1) WILD-TYPE 39 22
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                            5                            61 
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                            4                            22 
$`DEL PEAK  2(2Q22.1) CNV`
TCGA-BC-A10R TCGA-BC-A10Y TCGA-BC-A3KF TCGA-DD-A115 TCGA-DD-A1EL 
       10.13        23.34         0.26        83.57        13.64 

$`DEL PEAK  2(2Q22.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        11.57        37.32        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        37.61 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB 
       13.81         8.28         0.07         4.24         0.07         0.10 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.13        55.17        37.74        53.29        22.78         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        2.60         0.46        21.44        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI 
       66.31        19.76        53.52         6.67        34.06         6.02 
TCGA-DD-A1EJ TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
       29.16         4.24         3.62         3.65         1.97         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 
        3.19         0.43        22.85        14.40        19.07         0.13 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X 
        1.22        38.63        40.47        14.27        12.82        44.68 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       14.86         8.84         8.32         6.31         5.88         4.47 
TCGA-G3-A3CK 
        0.89 

      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                         0.26                          0.07 
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                        83.57                         90.67 
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                        13.64                         12.82 
[1] "0.3 - 83.6 (13.6)" "0.1 - 90.7 (12.8)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  2(2Q22.1) CNV" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  2(2Q22.1) CNV" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  2(2Q22.1) CNV" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"       "DEL PEAK  2(2Q22.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
[1] "hr=" "1.7"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) CNV          3    4
  DEL PEAK  2(2Q22.1) WILD-TYPE   22   43
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  FEMALE                       3                            22
  MALE                         4                            43
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  2(2Q22.1) CNV        6  0  0  1
  DEL PEAK  2(2Q22.1) WILD-TYPE 44  8  1  7
D28V4, multiclass
    clus
vv   DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  R0                       6                            44
  R1                       0                             8
  R2                       0                             1
  RX                       1                             7

Clustering(29) Variable = Del Peak  3(2q37.3)
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q37.3) CNV        7  3
  DEL PEAK  3(2Q37.3) WILD-TYPE 33 23
      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                           10                            56 
      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                            3                            23 
$`DEL PEAK  3(2Q37.3) CNV`
TCGA-BC-4073 TCGA-BC-A10Y TCGA-BC-A216 TCGA-BC-A3KF TCGA-DD-A113 TCGA-DD-A115 
       11.57        23.34        37.61         0.26        55.17        83.57 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EL 
        2.60        21.44        66.31        13.64 

$`DEL PEAK  3(2Q37.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        37.32        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 
        2.99        25.32         1.12        69.57         5.03        13.81 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        8.28         0.07         4.24         0.07         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D 
       37.74        53.29        22.78         7.33         0.46        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH 
       90.67        79.36        19.76        53.52         6.67        34.06 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
        6.02        29.16         4.24         3.62         3.65         1.97 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR 
        0.62         3.19         0.43        22.85        14.40        19.07 
TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.13         1.22        38.63        40.47        14.27        12.82 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       44.68        14.86         8.84         8.32         6.31         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK 
        4.47         0.89 

      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                         0.26                          0.07 
      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                        83.57                         90.67 
      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                       22.390                         9.485 
[1] "0.3 - 83.6 (22.4)" "0.1 - 90.7 (9.5)" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
      "DEL PEAK  3(2Q37.3) CNV" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK  3(2Q37.3) WILD-TYPE"       "DEL PEAK  3(2Q37.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
[1] "hr=" "2.2"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) CNV          5    7
  DEL PEAK  3(2Q37.3) WILD-TYPE   20   40
        clus
vv       DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                       5                            20
  MALE                         7                            40
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  3(2Q37.3) CNV        9  1  0  2
  DEL PEAK  3(2Q37.3) WILD-TYPE 41  7  1  6
D29V4, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE
  R0                       9                            41
  R1                       1                             7
  R2                       0                             1
  RX                       2                             6

Clustering(30) Variable = Del Peak  4(3p13)
D30V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  4(3P13) CNV        9  5
  DEL PEAK  4(3P13) WILD-TYPE 31 21
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                         14                          52 
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                          5                          21 
$`DEL PEAK  4(3P13) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5263 TCGA-CC-A3MA 
       37.32        10.13         5.03        13.81         4.24         0.07 
TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A1E9 TCGA-EP-A2KA TCGA-FV-A3R3 
        0.10        55.17         2.60        90.67         3.65         0.13 
TCGA-G3-A25T TCGA-G3-A25X 
       38.63        44.68 

$`DEL PEAK  4(3P13) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        11.57        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF 
       25.32        23.34         1.12        69.57        37.61         0.26 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        8.28         0.07         0.13        37.74        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA 
       22.78         7.33         0.46        21.44        51.25        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI 
       66.31        19.76        53.52         6.67        34.06         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC 
       29.16        13.64         4.24         3.62         1.97         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-G3-A25S 
        3.19         0.43        22.85        14.40        19.07         1.22 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       40.47        14.27        12.82        14.86         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        6.31         5.88         4.47         0.89 

      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                       0.07                        0.07 
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                      90.67                       83.57 
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                      7.580                      13.955 
[1] "0.1 - 90.7 (7.6)"  "0.1 - 83.6 (14.0)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "DEL PEAK  4(3P13) CNV"       "DEL PEAK  4(3P13) CNV" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  4(3P13) CNV"       "DEL PEAK  4(3P13) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "DEL PEAK  4(3P13) CNV"       "DEL PEAK  4(3P13) CNV" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  4(3P13) CNV"       "DEL PEAK  4(3P13) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "DEL PEAK  4(3P13) CNV"       "DEL PEAK  4(3P13) CNV" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  4(3P13) CNV"       "DEL PEAK  4(3P13) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  4(3P13) CNV" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
[1] "hr=" "1.5"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(3P13) CNV          8    7
  DEL PEAK  4(3P13) WILD-TYPE   17   40
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  FEMALE                     8                          17
  MALE                       7                          40
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  4(3P13) CNV       12  1  0  2
  DEL PEAK  4(3P13) WILD-TYPE 38  7  1  6
D30V4, multiclass
    clus
vv   DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  R0                    12                          38
  R1                     1                           7
  R2                     0                           1
  RX                     2                           6

Clustering(31) Variable = Del Peak  5(4q24)
D31V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  5(4Q24) CNV       16 14
  DEL PEAK  5(4Q24) WILD-TYPE 24 12
      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                         30                          36 
      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                         14                          12 
$`DEL PEAK  5(4Q24) CNV`
TCGA-BC-4072 TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A112 
       48.99        27.52        27.52        23.34         1.12         5.03 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC 
       13.81         0.26         0.07         4.24         0.10         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       55.17        37.74        53.29         7.33         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL 
       21.44        66.31        34.06         6.02        29.16        13.64 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-G3-A25S TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
        1.97         0.62         1.22        44.68        14.86         8.84 

$`DEL PEAK  5(4Q24) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X 
       11.57        37.32        10.13        46.78         2.99        25.32 
TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KG TCGA-CC-A3MA TCGA-DD-A115 TCGA-DD-A118 
       69.57        37.61         8.28         0.07        83.57        22.78 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       51.25        90.67        79.36        19.76        53.52         6.67 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
        4.24         3.62         3.65         3.19         0.43        22.85 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
       14.40        19.07         0.13        38.63        40.47        14.27 
TCGA-G3-A25W TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       12.82         8.32         6.31         5.88         4.47         0.89 

      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                       0.07                        0.07 
      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                      66.31                       90.67 
      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                     11.240                      13.545 
[1] "0.1 - 66.3 (11.2)" "0.1 - 90.7 (13.5)"
                 TCGA-BC-4072                  TCGA-BC-4073 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"DEL PEAK  5(4Q24) WILD-TYPE"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  5(4Q24) CNV"       "DEL PEAK  5(4Q24) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
      "DEL PEAK  5(4Q24) CNV" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
[1] "hr=" "2.2"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q24) CNV         10   23
  DEL PEAK  5(4Q24) WILD-TYPE   15   24
        clus
vv       DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE
  FEMALE                    10                          15
  MALE                      23                          24
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  5(4Q24) CNV       22  4  1  6
  DEL PEAK  5(4Q24) WILD-TYPE 28  4  0  2
D31V4, multiclass
    clus
vv   DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE
  R0                    22                          28
  R1                     4                           4
  R2                     1                           0
  RX                     6                           2

Clustering(32) Variable = Del Peak  6(4q35.1)
D32V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4Q35.1) CNV       16 13
  DEL PEAK  6(4Q35.1) WILD-TYPE 24 13
      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                           29                            37 
      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                           13                            13 
$`DEL PEAK  6(4Q35.1) CNV`
TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A217 
       10.13        27.52         2.99         1.12         5.03        13.81 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        0.26         8.28         0.07         0.07         0.10         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       55.17        37.74        53.29         7.33         2.60         0.46 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A2KB TCGA-EP-A2KC 
       34.06         6.02        29.16        13.64         1.97         0.62 
TCGA-FV-A2QR TCGA-G3-A25S TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
       19.07         1.22        44.68        14.86         8.84 

$`DEL PEAK  6(4Q35.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X 
       48.99        11.57        37.32        46.78        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A216 TCGA-CC-5263 TCGA-DD-A115 TCGA-DD-A118 
       23.34        69.57        37.61         4.24        83.57        22.78 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.44        51.25        90.67        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL 
       53.52         6.67         4.24         3.62         3.65         3.19 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U 
        0.43        22.85        14.40         0.13        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       14.27        12.82         8.32         6.31         5.88         4.47 
TCGA-G3-A3CK 
        0.89 

      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                         0.07                          0.13 
      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                        55.17                         90.67 
      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                         7.33                         21.44 
[1] "0.1 - 55.2 (7.3)"  "0.1 - 90.7 (21.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  6(4Q35.1) WILD-TYPE"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK  6(4Q35.1) CNV"       "DEL PEAK  6(4Q35.1) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
      "DEL PEAK  6(4Q35.1) CNV" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
[1] "hr=" "3"  
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) CNV         10   23
  DEL PEAK  6(4Q35.1) WILD-TYPE   15   24
        clus
vv       DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE
  FEMALE                      10                            15
  MALE                        23                            24
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  6(4Q35.1) CNV       23  3  1  5
  DEL PEAK  6(4Q35.1) WILD-TYPE 27  5  0  3
D32V4, multiclass
    clus
vv   DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE
  R0                      23                            27
  R1                       3                             5
  R2                       1                             0
  RX                       5                             3

Clustering(33) Variable = Del Peak  7(5q23.1)
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(5Q23.1) CNV        3  5
  DEL PEAK  7(5Q23.1) WILD-TYPE 37 21
      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                            8                            58 
      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                            5                            21 
$`DEL PEAK  7(5Q23.1) CNV`
TCGA-BC-A10R TCGA-BC-A10S TCGA-CC-5263 TCGA-DD-A116 TCGA-DD-A11A TCGA-DD-A1EH 
       10.13        46.78         4.24        53.29         2.60        34.06 
TCGA-DD-A1EJ TCGA-ES-A2HS 
       29.16        22.85 

$`DEL PEAK  7(5Q23.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        11.57        37.32        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        37.61 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MA TCGA-CC-A3MB 
       13.81         0.26         8.28         0.07         0.07         0.10 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 
        0.13        55.17        37.74        83.57        22.78         7.33 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        0.46        21.44        51.25        90.67        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL TCGA-EP-A12J 
       19.76        53.52         6.67         6.02        13.64         4.24 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        3.62         3.65         1.97         0.62         3.19         0.43 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U 
       14.40        19.07         0.13         1.22        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       14.27        12.82        44.68        14.86         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        6.31         5.88         4.47         0.89 

      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                         2.60                          0.07 
      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                        53.29                         90.67 
      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                       26.005                        12.195 
[1] "2.6 - 53.3 (26.0)" "0.1 - 90.7 (12.2)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  7(5Q23.1) CNV" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  7(5Q23.1) WILD-TYPE"       "DEL PEAK  7(5Q23.1) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
[1] "hr=" "1.5"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q23.1) CNV          2    7
  DEL PEAK  7(5Q23.1) WILD-TYPE   23   40
        clus
vv       DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE
  FEMALE                       2                            23
  MALE                         7                            40
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  7(5Q23.1) CNV        7  0  0  2
  DEL PEAK  7(5Q23.1) WILD-TYPE 43  8  1  6
D33V4, multiclass
    clus
vv   DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE
  R0                       7                            43
  R1                       0                             8
  R2                       0                             1
  RX                       2                             6

Clustering(34) Variable = Del Peak  8(6q16.3)
D34V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(6Q16.3) CNV       16  8
  DEL PEAK  8(6Q16.3) WILD-TYPE 24 18
      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                           24                            42 
      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                            8                            18 
$`DEL PEAK  8(6Q16.3) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A3KF TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 
       37.32        10.13         0.26         0.07        55.17        37.74 
TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 
       83.57        22.78         7.33         2.60        21.44        90.67 
TCGA-DD-A1EC TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-EP-A12J 
       19.76         6.67        34.06         6.02        29.16         4.24 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A2QR TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25X 
        0.43        22.85        19.07         1.22        38.63        44.68 

$`DEL PEAK  8(6Q16.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        11.57        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        37.61 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC 
       13.81         8.28         0.07         4.24         0.10         0.13 
TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED 
       53.29         0.46        51.25        79.36        66.31        53.52 
TCGA-DD-A1EL TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       13.64         3.62         3.65         1.97         0.62         3.19 
TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
       14.40         0.13        40.47        14.27        12.82        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.84         8.32         6.31         5.88         4.47         0.89 

      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                         0.07                          0.07 
      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                        90.67                         79.36 
      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                       20.600                        10.205 
[1] "0.1 - 90.7 (20.6)" "0.1 - 79.4 (10.2)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK  8(6Q16.3) CNV"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK  8(6Q16.3) WILD-TYPE"       "DEL PEAK  8(6Q16.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK  8(6Q16.3) CNV" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
[1] "hr=" "2"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6Q16.3) CNV          9   16
  DEL PEAK  8(6Q16.3) WILD-TYPE   16   31
        clus
vv       DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE
  FEMALE                       9                            16
  MALE                        16                            31
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  8(6Q16.3) CNV       18  2  1  3
  DEL PEAK  8(6Q16.3) WILD-TYPE 32  6  0  5
D34V4, multiclass
    clus
vv   DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE
  R0                      18                            32
  R1                       2                             6
  R2                       1                             0
  RX                       3                             5

Clustering(35) Variable = Del Peak  9(6q26)
D35V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  9(6Q26) CNV       16  9
  DEL PEAK  9(6Q26) WILD-TYPE 24 17
      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                         25                          41 
      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                          9                          17 
$`DEL PEAK  9(6Q26) CNV`
TCGA-BC-A10Q TCGA-BC-A3KF TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 
       37.32         0.26         4.24         0.07         0.13        55.17 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C 
       37.74        83.57        22.78         7.33         2.60        21.44 
TCGA-DD-A1E9 TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-EP-A12J 
       90.67         6.67        34.06         6.02        29.16         4.24 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A2QR TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25X 
        0.43        22.85        19.07         1.22        38.63        44.68 
TCGA-G3-A25Y 
       14.86 

$`DEL PEAK  9(6Q26) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        11.57        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
        2.99        25.32        23.34         1.12        69.57         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MB TCGA-DD-A116 
       37.61        13.81         8.28         0.07         0.10        53.29 
TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
        0.46        51.25        79.36        66.31        19.76        53.52 
TCGA-DD-A1EL TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       13.64         3.62         3.65         1.97         0.62         3.19 
TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z 
       14.40         0.13        40.47        14.27        12.82         8.84 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.32         6.31         5.88         4.47         0.89 

      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                       0.07                        0.07 
      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                      90.67                       79.36 
      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                      19.07                       11.57 
[1] "0.1 - 90.7 (19.1)" "0.1 - 79.4 (11.6)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A3MA 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A113                  TCGA-DD-A114 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A115                  TCGA-DD-A116 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A1EH                  TCGA-DD-A1EI 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-DD-A1EJ                  TCGA-DD-A1EL 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-FV-A3R3                  TCGA-G3-A25S 
"DEL PEAK  9(6Q26) WILD-TYPE"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
      "DEL PEAK  9(6Q26) CNV" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
      "DEL PEAK  9(6Q26) CNV"       "DEL PEAK  9(6Q26) CNV" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
[1] "hr=" "1.6"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q26) CNV          8   19
  DEL PEAK  9(6Q26) WILD-TYPE   17   28
        clus
vv       DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE
  FEMALE                     8                          17
  MALE                      19                          28
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  9(6Q26) CNV       18  2  1  4
  DEL PEAK  9(6Q26) WILD-TYPE 32  6  0  4
D35V4, multiclass
    clus
vv   DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE
  R0                    18                          32
  R1                     2                           6
  R2                     1                           0
  RX                     4                           4

Clustering(36) Variable = Del Peak 10(8p23.2)
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(8P23.2) CNV       23 17
  DEL PEAK 10(8P23.2) WILD-TYPE 17  9
      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                           40                            26 
      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                           17                             9 
$`DEL PEAK 10(8P23.2) CNV`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A112 
       48.99        10.13        46.78        27.52        27.52         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 
       37.61        13.81         0.26         8.28         0.07         4.24 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.13        55.17        83.57        53.29        22.78         7.33 
TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL 
       21.44        90.67         6.67         6.02        29.16        13.64 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        4.24         3.62         3.65         0.62         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-G3-A25S TCGA-G3-A25V TCGA-G3-A25W 
       22.85        14.40        19.07         1.22        14.27        12.82 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CJ 
       44.68        14.86         8.32         4.47 

$`DEL PEAK 10(8P23.2) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       11.57        37.32         2.99        25.32        23.34         1.12 
TCGA-BC-A110 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A11A TCGA-DD-A11B 
       69.57         0.07         0.10        37.74         2.60         0.46 
TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EH 
       51.25        79.36        66.31        19.76        53.52        34.06 
TCGA-EP-A2KB TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25Z TCGA-G3-A3CH 
        1.97         0.13        38.63        40.47         8.84         6.31 
TCGA-G3-A3CI TCGA-G3-A3CK 
        5.88         0.89 

      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                         0.07                          0.07 
      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                        90.67                         79.36 
      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                       13.230                        15.665 
[1] "0.1 - 90.7 (13.2)" "0.1 - 79.4 (15.7)"
                   TCGA-BC-4072                    TCGA-BC-4073 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
      "DEL PEAK 10(8P23.2) CNV"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 10(8P23.2) WILD-TYPE"       "DEL PEAK 10(8P23.2) CNV" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "DEL PEAK 10(8P23.2) CNV" "DEL PEAK 10(8P23.2) WILD-TYPE" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P23.2) CNV         13   31
  DEL PEAK 10(8P23.2) WILD-TYPE   12   16
        clus
vv       DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE
  FEMALE                      13                            12
  MALE                        31                            16
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 10(8P23.2) CNV       28  5  1  5
  DEL PEAK 10(8P23.2) WILD-TYPE 22  3  0  3
D36V4, multiclass
    clus
vv   DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE
  R0                      28                            22
  R1                       5                             3
  R2                       1                             0
  RX                       5                             3

Clustering(37) Variable = Del Peak 11(9p21.3)
D37V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(9P21.3) CNV       16 13
  DEL PEAK 11(9P21.3) WILD-TYPE 24 13
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           29                            37 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           13                            13 
$`DEL PEAK 11(9P21.3) CNV`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U 
       48.99        11.57        37.32        10.13        46.78        27.52 
TCGA-BC-A112 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC 
        5.03         0.26         0.07         4.24         0.10         0.13 
TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       55.17        83.57        53.29         7.33         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A2KA TCGA-EP-A2KB 
       21.44         6.02        29.16        13.64         3.65         1.97 
TCGA-EP-A2KC TCGA-EP-A3RK TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A3CJ 
        0.62         0.43         1.22        38.63         4.47 

$`DEL PEAK 11(9P21.3) WILD-TYPE`
TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
       27.52         2.99        25.32        23.34         1.12        69.57 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A118 
       37.61        13.81         8.28         0.07        37.74        22.78 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.25        90.67        79.36        66.31        19.76        53.52 
TCGA-DD-A1EE TCGA-DD-A1EH TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL TCGA-ES-A2HS 
        6.67        34.06         4.24         3.62         3.19        22.85 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
       14.40        19.07         0.13        40.47        14.27        12.82 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       44.68        14.86         8.84         8.32         6.31         5.88 
TCGA-G3-A3CK 
        0.89 

      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                         0.07                          0.07 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                        83.57                         90.67 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                         6.02                         14.86 
[1] "0.1 - 83.6 (6.0)"  "0.1 - 90.7 (14.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A113                    TCGA-DD-A114 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
[1] "hr=" "1.8"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) CNV         10   21
  DEL PEAK 11(9P21.3) WILD-TYPE   15   26
        clus
vv       DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  FEMALE                      10                            15
  MALE                        21                            26
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 11(9P21.3) CNV       19  5  1  4
  DEL PEAK 11(9P21.3) WILD-TYPE 31  3  0  4
D37V4, multiclass
    clus
vv   DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  R0                      19                            31
  R1                       5                             3
  R2                       1                             0
  RX                       4                             4

Clustering(38) Variable = Del Peak 12(10p15.3)
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 12(10P15.3) CNV        3  2
  DEL PEAK 12(10P15.3) WILD-TYPE 37 24
      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                             5                             61 
      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                             2                             24 
$`DEL PEAK 12(10P15.3) CNV`
TCGA-BC-A112 TCGA-CC-A3MC TCGA-DD-A11A TCGA-DD-A1EL TCGA-EP-A26S 
        5.03         0.13         2.60        13.64         3.62 

$`DEL PEAK 12(10P15.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        11.57        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
       27.52         2.99        25.32        23.34         1.12        69.57 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 
       37.61        13.81         0.26         8.28         0.07         4.24 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        0.07         0.10        55.17        37.74        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 
       22.78         7.33         0.46        21.44        51.25        90.67 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH 
       79.36        66.31        19.76        53.52         6.67        34.06 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-EP-A12J TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
        6.02        29.16         4.24         3.65         1.97         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 
        3.19         0.43        22.85        14.40        19.07         0.13 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X 
        1.22        38.63        40.47        14.27        12.82        44.68 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       14.86         8.84         8.32         6.31         5.88         4.47 
TCGA-G3-A3CK 
        0.89 

      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                          0.13                           0.07 
      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                         13.64                          90.67 
      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                          3.62                          14.27 
[1] "0.1 - 13.6 (3.6)"  "0.1 - 90.7 (14.3)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 12(10P15.3) CNV" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 12(10P15.3) CNV" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 12(10P15.3) CNV" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 12(10P15.3) CNV" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 12(10P15.3) CNV" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 12(10P15.3) CNV" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 12(10P15.3) WILD-TYPE"       "DEL PEAK 12(10P15.3) CNV" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
[1] "hr=" "5.8"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(10P15.3) CNV          0    5
  DEL PEAK 12(10P15.3) WILD-TYPE   25   42
        clus
vv       DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE
  FEMALE                        0                             25
  MALE                          5                             42
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 12(10P15.3) CNV        4  0  0  0
  DEL PEAK 12(10P15.3) WILD-TYPE 46  8  1  8
D38V4, multiclass
    clus
vv   DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE
  R0                        4                             46
  R1                        0                              8
  R2                        0                              1
  RX                        0                              8

Clustering(39) Variable = Del Peak 13(10q23.31)
D39V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 13(10Q23.31) CNV       13  9
  DEL PEAK 13(10Q23.31) WILD-TYPE 27 17
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             22                              44 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                              9                              17 
$`DEL PEAK 13(10Q23.31) CNV`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A216 
       11.57        37.32        10.13         2.99        23.34        37.61 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
       13.81         8.28         4.24         0.07         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EL 
       37.74        83.57        22.78         2.60        21.44        13.64 
TCGA-FV-A2QR TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25X 
       19.07        38.63        40.47        44.68 

$`DEL PEAK 13(10Q23.31) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        46.78        27.52        27.52        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A3KF TCGA-CC-5258 TCGA-DD-A113 TCGA-DD-A116 
       69.57         5.03         0.26         0.07        55.17        53.29 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        7.33         0.46        51.25        90.67        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ 
       19.76        53.52         6.67        34.06         6.02        29.16 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        4.24         3.62         3.65         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25V 
        0.43        22.85        14.40         0.13         1.22        14.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       12.82        14.86         8.84         8.32         6.31         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK 
        4.47         0.89 

      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                           0.07                            0.07 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                          83.57                           90.67 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                          16.44                            8.58 
[1] "0.1 - 83.6 (16.4)" "0.1 - 90.7 (8.6)" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 13(10Q23.31) CNV"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.2"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) CNV          9   16
  DEL PEAK 13(10Q23.31) WILD-TYPE   16   31
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  FEMALE                         9                              16
  MALE                          16                              31
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 13(10Q23.31) CNV       16  3  0  5
  DEL PEAK 13(10Q23.31) WILD-TYPE 34  5  1  3
D39V4, multiclass
    clus
vv   DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  R0                        16                              34
  R1                         3                               5
  R2                         0                               1
  RX                         5                               3

Clustering(40) Variable = Del Peak 14(10q24.33)
D40V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 14(10Q24.33) CNV        9  9
  DEL PEAK 14(10Q24.33) WILD-TYPE 31 17
      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                             18                              48 
      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                              9                              17 
$`DEL PEAK 14(10Q24.33) CNV`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A217 
       11.57        37.32        10.13         2.99         5.03        13.81 
TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11A TCGA-DD-A11C 
        0.07         0.13        37.74        83.57         2.60        21.44 
TCGA-DD-A1EL TCGA-FV-A2QR TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A25Y 
       13.64        19.07        38.63        40.47        44.68        14.86 

$`DEL PEAK 14(10Q24.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y 
       48.99        46.78        27.52        27.52        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 
        1.12        69.57        37.61         0.26         8.28         0.07 
TCGA-CC-5263 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        4.24         0.10        55.17        53.29        22.78         7.33 
TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        0.46        51.25        90.67        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-EP-A12J 
       53.52         6.67        34.06         6.02        29.16         4.24 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        3.62         3.65         1.97         0.62         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25V TCGA-G3-A25W 
       22.85        14.40         0.13         1.22        14.27        12.82 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.84         8.32         6.31         5.88         4.47         0.89 

      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                           0.07                            0.07 
      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                          83.57                           90.67 
      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                         14.335                           8.580 
[1] "0.1 - 83.6 (14.3)" "0.1 - 90.7 (8.6)" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
      "DEL PEAK 14(10Q24.33) CNV" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
      "DEL PEAK 14(10Q24.33) CNV"       "DEL PEAK 14(10Q24.33) CNV" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
[1] "hr=" "1.5"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q24.33) CNV          7   14
  DEL PEAK 14(10Q24.33) WILD-TYPE   18   33
        clus
vv       DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE
  FEMALE                         7                              18
  MALE                          14                              33
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 14(10Q24.33) CNV       13  3  0  4
  DEL PEAK 14(10Q24.33) WILD-TYPE 37  5  1  4
D40V4, multiclass
    clus
vv   DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE
  R0                        13                              37
  R1                         3                               5
  R2                         0                               1
  RX                         4                               4

Clustering(41) Variable = Del Peak 15(11q14.1)
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 15(11Q14.1) CNV        8  6
  DEL PEAK 15(11Q14.1) WILD-TYPE 32 20
      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                            14                             52 
      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                             6                             20 
$`DEL PEAK 15(11Q14.1) CNV`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF 
       11.57        37.32        46.78         5.03        13.81         0.26 
TCGA-CC-5263 TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A1E9 TCGA-DD-A1EJ 
        4.24         0.13        55.17         2.60        90.67        29.16 
TCGA-EP-A2KC TCGA-G3-A25S 
        0.62         1.22 

$`DEL PEAK 15(11Q14.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        10.13        27.52        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KG TCGA-CC-5258 
       23.34         1.12        69.57        37.61         8.28         0.07 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 
        0.07         0.10        37.74        83.57        53.29        22.78 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB 
        7.33         0.46        21.44        51.25        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EL 
       19.76        53.52         6.67        34.06         6.02        13.64 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK 
        4.24         3.62         3.65         1.97         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U 
       22.85        14.40        19.07         0.13        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       14.27        12.82        44.68        14.86         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        6.31         5.88         4.47         0.89 

      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                          0.13                           0.07 
      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                         90.67                          83.57 
      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                         8.300                         13.955 
[1] "0.1 - 90.7 (8.3)"  "0.1 - 83.6 (14.0)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 15(11Q14.1) CNV"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 15(11Q14.1) CNV"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 15(11Q14.1) CNV"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK 15(11Q14.1) CNV" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 15(11Q14.1) WILD-TYPE"       "DEL PEAK 15(11Q14.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11Q14.1) CNV          5   10
  DEL PEAK 15(11Q14.1) WILD-TYPE   20   37
        clus
vv       DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE
  FEMALE                        5                             20
  MALE                         10                             37
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 15(11Q14.1) CNV       10  3  0  2
  DEL PEAK 15(11Q14.1) WILD-TYPE 40  5  1  6
D41V4, multiclass
    clus
vv   DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE
  R0                       10                             40
  R1                        3                              5
  R2                        0                              1
  RX                        2                              6

Clustering(42) Variable = Del Peak 16(12p12.1)
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(12P12.1) CNV        9  4
  DEL PEAK 16(12P12.1) WILD-TYPE 31 22
      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                            13                             53 
      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                             4                             22 
$`DEL PEAK 16(12P12.1) CNV`
TCGA-BC-4073 TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-CC-A3MA TCGA-CC-A3MC 
       11.57        23.34        13.81         0.26         0.07         0.13 
TCGA-DD-A119 TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A2KC TCGA-G3-A25S 
        7.33        34.06        29.16        13.64         0.62         1.22 
TCGA-G3-A25Z 
        8.84 

$`DEL PEAK 16(12P12.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        37.32        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        37.61 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 
        8.28         0.07         4.24         0.10        55.17        37.74 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C 
       83.57        53.29        22.78         2.60         0.46        21.44 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.25        90.67        79.36        66.31        19.76        53.52 
TCGA-DD-A1EE TCGA-DD-A1EI TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
        6.67         6.02         4.24         3.62         3.65         1.97 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 
        3.19         0.43        22.85        14.40        19.07         0.13 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y 
       38.63        40.47        14.27        12.82        44.68        14.86 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.32         6.31         5.88         4.47         0.89 

      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                          0.07                           0.07 
      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                         34.06                          90.67 
      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                          8.84                          14.40 
[1] "0.1 - 34.1 (8.8)"  "0.1 - 90.7 (14.4)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 16(12P12.1) CNV"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 16(12P12.1) CNV"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 16(12P12.1) CNV"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 16(12P12.1) CNV"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 16(12P12.1) CNV"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 16(12P12.1) CNV"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 16(12P12.1) WILD-TYPE"       "DEL PEAK 16(12P12.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 16(12P12.1) CNV" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
[1] "hr=" "1.9"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(12P12.1) CNV          4   11
  DEL PEAK 16(12P12.1) WILD-TYPE   21   36
        clus
vv       DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE
  FEMALE                        4                             21
  MALE                         11                             36
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 16(12P12.1) CNV       11  2  1  0
  DEL PEAK 16(12P12.1) WILD-TYPE 39  6  0  8
D42V4, multiclass
    clus
vv   DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE
  R0                       11                             39
  R1                        2                              6
  R2                        1                              0
  RX                        0                              8

Clustering(43) Variable = Del Peak 17(12q24.33)
D43V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 17(12Q24.33) CNV        4  4
  DEL PEAK 17(12Q24.33) WILD-TYPE 36 22
      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                              8                              58 
      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                              4                              22 
$`DEL PEAK 17(12Q24.33) CNV`
TCGA-BC-A217 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A11D TCGA-DD-A1EH TCGA-DD-A1EL 
       13.81         0.07         0.13        51.25        34.06        13.64 
TCGA-EP-A2KC TCGA-G3-A25Y 
        0.62        14.86 

$`DEL PEAK 17(12Q24.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        11.57        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
       27.52         2.99        25.32        23.34         1.12        69.57 
TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 
        5.03        37.61         0.26         8.28         0.07         4.24 
TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 
        0.10        55.17        37.74        83.57        53.29        22.78 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EA 
        7.33         2.60         0.46        21.44        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EJ 
       66.31        19.76        53.52         6.67         6.02        29.16 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK 
        4.24         3.62         3.65         1.97         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25T 
       22.85        14.40        19.07         0.13         1.22        38.63 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG 
       40.47        14.27        12.82        44.68         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        6.31         5.88         4.47         0.89 

      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                           0.07                            0.07 
      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                          51.25                           90.67 
      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                         13.725                          12.195 
[1] "0.1 - 51.2 (13.7)" "0.1 - 90.7 (12.2)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
      "DEL PEAK 17(12Q24.33) CNV" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE"       "DEL PEAK 17(12Q24.33) CNV" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
[1] "hr=" "2"  
D43V2, continuous
D43V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.33) CNV          5    6
  DEL PEAK 17(12Q24.33) WILD-TYPE   20   41
        clus
vv       DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE
  FEMALE                         5                              20
  MALE                           6                              41
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 17(12Q24.33) CNV        9  0  0  1
  DEL PEAK 17(12Q24.33) WILD-TYPE 41  8  1  7
D43V4, multiclass
    clus
vv   DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE
  R0                         9                              41
  R1                         0                               8
  R2                         0                               1
  RX                         1                               7

Clustering(44) Variable = Del Peak 18(13q14.2)
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(13Q14.2) CNV       16 12
  DEL PEAK 18(13Q14.2) WILD-TYPE 24 14
      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                            28                             38 
      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                            12                             14 
$`DEL PEAK 18(13Q14.2) CNV`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A10Z 
       37.32        10.13        27.52         2.99        23.34         1.12 
TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 
        5.03        13.81         0.26         8.28         0.07         4.24 
TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        0.07         0.13        55.17        37.74        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EI TCGA-EP-A3RK TCGA-G3-A25S 
       22.78         2.60        21.44         6.02         0.43         1.22 
TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CH 
       38.63        44.68        14.86         6.31 

$`DEL PEAK 18(13Q14.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A110 
       48.99        11.57        46.78        27.52        25.32        69.57 
TCGA-BC-A216 TCGA-CC-A3MB TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 
       37.61         0.10         7.33         0.46        51.25        90.67 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH 
       79.36        66.31        19.76        53.52         6.67        34.06 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
       29.16        13.64         4.24         3.62         3.65         1.97 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 
        0.62         3.19        22.85        14.40        19.07         0.13 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI 
       40.47        14.27        12.82         8.84         8.32         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK 
        4.47         0.89 

      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                         83.57                          90.67 
      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                         9.205                         13.955 
[1] "0.1 - 83.6 (9.2)"  "0.1 - 90.7 (14.0)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 18(13Q14.2) WILD-TYPE"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 18(13Q14.2) CNV"       "DEL PEAK 18(13Q14.2) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 18(13Q14.2) CNV" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
[1] "hr=" "1.5"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(13Q14.2) CNV         12   22
  DEL PEAK 18(13Q14.2) WILD-TYPE   13   25
        clus
vv       DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE
  FEMALE                       12                             13
  MALE                         22                             25
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 18(13Q14.2) CNV       21  4  0  6
  DEL PEAK 18(13Q14.2) WILD-TYPE 29  4  1  2
D44V4, multiclass
    clus
vv   DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE
  R0                       21                             29
  R1                        4                              4
  R2                        0                              1
  RX                        6                              2

Clustering(45) Variable = Del Peak 19(14q23.3)
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(14Q23.3) CNV       20  6
  DEL PEAK 19(14Q23.3) WILD-TYPE 20 20
      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                            26                             40 
      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                             6                             20 
$`DEL PEAK 19(14Q23.3) CNV`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF 
       11.57        37.32         1.12         5.03        37.61         0.26 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
        8.28         0.07         0.07         0.10         0.13        55.17 
TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EI 
       83.57        22.78         2.60        21.44        90.67         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A2KB TCGA-EP-A3RK TCGA-G3-A25S 
       29.16        13.64         4.24         1.97         0.43         1.22 
TCGA-G3-A25X TCGA-G3-A3CH 
       44.68         6.31 

$`DEL PEAK 19(14Q23.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        10.13        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A217 TCGA-CC-5263 TCGA-DD-A114 
       25.32        23.34        69.57        13.81         4.24        37.74 
TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB 
       53.29         7.33         0.46        51.25        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-EP-A26S TCGA-EP-A2KA 
       19.76        53.52         6.67        34.06         3.62         3.65 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 
        0.62         3.19        22.85        14.40        19.07         0.13 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z 
       38.63        40.47        14.27        12.82        14.86         8.84 
TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.32         5.88         4.47         0.89 

      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                          0.07                           0.13 
      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                         90.67                          79.36 
      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                         6.165                         14.630 
[1] "0.1 - 90.7 (6.2)"  "0.1 - 79.4 (14.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 19(14Q23.3) CNV"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 19(14Q23.3) WILD-TYPE"       "DEL PEAK 19(14Q23.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 19(14Q23.3) CNV" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
[1] "hr=" "2.4"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(14Q23.3) CNV         10   20
  DEL PEAK 19(14Q23.3) WILD-TYPE   15   27
        clus
vv       DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE
  FEMALE                       10                             15
  MALE                         20                             27
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 19(14Q23.3) CNV       20  3  0  5
  DEL PEAK 19(14Q23.3) WILD-TYPE 30  5  1  3
D45V4, multiclass
    clus
vv   DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE
  R0                       20                             30
  R1                        3                              5
  R2                        0                              1
  RX                        5                              3

Clustering(46) Variable = Del Peak 20(15q15.1)
D46V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(15Q15.1) CNV        9  6
  DEL PEAK 20(15Q15.1) WILD-TYPE 31 20
      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                            15                             51 
      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                             6                             20 
$`DEL PEAK 20(15Q15.1) CNV`
TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5258 TCGA-CC-A3MA TCGA-DD-A113 
        2.99         5.03        13.81         0.07         0.07        55.17 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11A TCGA-DD-A1E9 TCGA-DD-A1EI TCGA-DD-A1EJ 
       37.74        83.57         2.60        90.67         6.02        29.16 
TCGA-DD-A1EL TCGA-EP-A2KB TCGA-G3-A25Z 
       13.64         1.97         8.84 

$`DEL PEAK 20(15Q15.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        11.57        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 
       27.52        25.32        23.34         1.12        69.57        37.61 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A116 
        0.26         8.28         4.24         0.10         0.13        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA 
       22.78         7.33         0.46        21.44        51.25        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-EP-A12J 
       66.31        19.76        53.52         6.67        34.06         4.24 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
        3.62         3.65         0.62         3.19         0.43        22.85 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U 
       14.40        19.07         0.13         1.22        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH 
       14.27        12.82        44.68        14.86         8.32         6.31 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        5.88         4.47         0.89 

      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                         90.67                          79.36 
      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                          8.84                          14.27 
[1] "0.1 - 90.7 (8.8)"  "0.1 - 79.4 (14.3)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 20(15Q15.1) CNV"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 20(15Q15.1) CNV"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 20(15Q15.1) CNV"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 20(15Q15.1) CNV"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 20(15Q15.1) CNV"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 20(15Q15.1) CNV"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 20(15Q15.1) WILD-TYPE"       "DEL PEAK 20(15Q15.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 20(15Q15.1) CNV" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
[1] "hr=" "1.6"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(15Q15.1) CNV          4   12
  DEL PEAK 20(15Q15.1) WILD-TYPE   21   35
        clus
vv       DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE
  FEMALE                        4                             21
  MALE                         12                             35
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 20(15Q15.1) CNV       13  1  0  2
  DEL PEAK 20(15Q15.1) WILD-TYPE 37  7  1  6
D46V4, multiclass
    clus
vv   DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE
  R0                       13                             37
  R1                        1                              7
  R2                        0                              1
  RX                        2                              6

Clustering(47) Variable = Del Peak 21(16q23.1)
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(16Q23.1) CNV       18 12
  DEL PEAK 21(16Q23.1) WILD-TYPE 22 14
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                            30                             36 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                            12                             14 
$`DEL PEAK 21(16Q23.1) CNV`
TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       10.13        46.78         2.99        25.32        23.34         1.12 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA 
       37.61        13.81         8.28         0.07         4.24         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A11A 
        0.10         0.13        55.17        37.74        53.29         2.60 
TCGA-DD-A11B TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-EP-A2KB TCGA-ES-A2HS 
        0.46        34.06         6.02        29.16         1.97        22.85 
TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH 
        1.22        40.47        44.68        14.86         8.84         6.31 

$`DEL PEAK 21(16Q23.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A110 
       48.99        11.57        37.32        27.52        27.52        69.57 
TCGA-BC-A112 TCGA-BC-A3KF TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C 
        5.03         0.26        83.57        22.78         7.33        21.44 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.25        90.67        79.36        66.31        19.76        53.52 
TCGA-DD-A1EE TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC 
        6.67        13.64         4.24         3.62         3.65         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25T 
        3.19         0.43        14.40        19.07         0.13        38.63 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       14.27        12.82         8.32         5.88         4.47         0.89 

      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                          0.07                           0.13 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                         55.17                          90.67 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                         9.485                         13.955 
[1] "0.1 - 55.2 (9.5)"  "0.1 - 90.7 (14.0)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 21(16Q23.1) CNV"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.7"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) CNV         12   21
  DEL PEAK 21(16Q23.1) WILD-TYPE   13   26
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  FEMALE                       12                             13
  MALE                         21                             26
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 21(16Q23.1) CNV       25  2  0  6
  DEL PEAK 21(16Q23.1) WILD-TYPE 25  6  1  2
D47V4, multiclass
    clus
vv   DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  R0                       25                             25
  R1                        2                              6
  R2                        0                              1
  RX                        6                              2

Clustering(48) Variable = Del Peak 22(17p12)
D48V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 22(17P12) CNV       21 19
  DEL PEAK 22(17P12) WILD-TYPE 19  7
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          40                           26 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          19                            7 
$`DEL PEAK 22(17P12) CNV`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y 
       48.99        11.57        10.13        27.52        27.52        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
        1.12        69.57         5.03        13.81         0.26         8.28 
TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 
        0.07         4.24         0.07         0.10         0.13        37.74 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A11D 
       83.57        53.29        22.78         7.33        21.44        51.25 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A2KC 
       79.36        66.31         6.02        29.16        13.64         0.62 
TCGA-ES-A2HS TCGA-FV-A2QR TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
       22.85        19.07         1.22        40.47        14.27        12.82 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       14.86         8.84         8.32         6.31 

$`DEL PEAK 22(17P12) WILD-TYPE`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A216 TCGA-DD-A113 
       37.32        46.78         2.99        25.32        37.61        55.17 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
        2.60         0.46        90.67        19.76        53.52         6.67 
TCGA-DD-A1EH TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL 
       34.06         4.24         3.62         3.65         1.97         3.19 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A3CI 
        0.43        14.40         0.13        38.63        44.68         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK 
        4.47         0.89 

      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                        0.07                         0.13 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                       83.57                        90.67 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                      13.725                        6.275 
[1] "0.1 - 83.6 (13.7)" "0.1 - 90.7 (6.3)" 
                  TCGA-BC-4072                   TCGA-BC-4073 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10Q                   TCGA-BC-A10R 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10S                   TCGA-BC-A10T 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10U                   TCGA-BC-A10W 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A10X                   TCGA-BC-A10Y 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10Z                   TCGA-BC-A110 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A112                   TCGA-BC-A216 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A217                   TCGA-BC-A3KF 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A3KG                   TCGA-CC-5258 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-CC-5263                   TCGA-CC-A3MA 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-CC-A3MB                   TCGA-CC-A3MC 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A113                   TCGA-DD-A114 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A115                   TCGA-DD-A116 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A118                   TCGA-DD-A119 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A11A                   TCGA-DD-A11B 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A11C                   TCGA-DD-A11D 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1E9                   TCGA-DD-A1EA 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1EB                   TCGA-DD-A1EC 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1ED                   TCGA-DD-A1EE 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1EH                   TCGA-DD-A1EI 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1EJ                   TCGA-DD-A1EL 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EP-A12J                   TCGA-EP-A26S 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KA                   TCGA-EP-A2KB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KC                   TCGA-EP-A3JL 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A3RK                   TCGA-ES-A2HS 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-ES-A2HT                   TCGA-FV-A2QR 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FV-A3R3                   TCGA-G3-A25S 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25T                   TCGA-G3-A25U 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25V                   TCGA-G3-A25W 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25X                   TCGA-G3-A25Y 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25Z                   TCGA-G3-A3CG 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A3CH                   TCGA-G3-A3CI 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A3CJ                   TCGA-G3-A3CK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-4072                   TCGA-BC-4073 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10Q                   TCGA-BC-A10R 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10S                   TCGA-BC-A10T 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10U                   TCGA-BC-A10W 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A10X                   TCGA-BC-A10Y 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10Z                   TCGA-BC-A110 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A112                   TCGA-BC-A216 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A217                   TCGA-BC-A3KF 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A3KG                   TCGA-CC-5258 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-CC-5263                   TCGA-CC-A3MA 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-CC-A3MB                   TCGA-CC-A3MC 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A113                   TCGA-DD-A114 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A115                   TCGA-DD-A116 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A118                   TCGA-DD-A119 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A11A                   TCGA-DD-A11B 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A11C                   TCGA-DD-A11D 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1E9                   TCGA-DD-A1EA 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1EB                   TCGA-DD-A1EC 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1ED                   TCGA-DD-A1EE 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1EH                   TCGA-DD-A1EI 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1EJ                   TCGA-DD-A1EL 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EP-A12J                   TCGA-EP-A26S 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KA                   TCGA-EP-A2KB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KC                   TCGA-EP-A3JL 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A3RK                   TCGA-ES-A2HS 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-ES-A2HT                   TCGA-FV-A2QR 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FV-A3R3                   TCGA-G3-A25S 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25T                   TCGA-G3-A25U 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25V                   TCGA-G3-A25W 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25X                   TCGA-G3-A25Y 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25Z                   TCGA-G3-A3CG 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A3CH                   TCGA-G3-A3CI 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A3CJ                   TCGA-G3-A3CK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-4072                   TCGA-BC-4073 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10Q                   TCGA-BC-A10R 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10S                   TCGA-BC-A10T 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10U                   TCGA-BC-A10W 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A10X                   TCGA-BC-A10Y 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A10Z                   TCGA-BC-A110 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A112                   TCGA-BC-A216 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A217                   TCGA-BC-A3KF 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-BC-A3KG                   TCGA-CC-5258 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-CC-5263                   TCGA-CC-A3MA 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-CC-A3MB                   TCGA-CC-A3MC 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A113                   TCGA-DD-A114 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A115                   TCGA-DD-A116 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A118                   TCGA-DD-A119 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A11A                   TCGA-DD-A11B 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A11C                   TCGA-DD-A11D 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1E9                   TCGA-DD-A1EA 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1EB                   TCGA-DD-A1EC 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1ED                   TCGA-DD-A1EE 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1EH                   TCGA-DD-A1EI 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DD-A1EJ                   TCGA-DD-A1EL 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EP-A12J                   TCGA-EP-A26S 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KA                   TCGA-EP-A2KB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KC                   TCGA-EP-A3JL 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A3RK                   TCGA-ES-A2HS 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-ES-A2HT                   TCGA-FV-A2QR 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FV-A3R3                   TCGA-G3-A25S 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25T                   TCGA-G3-A25U 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25V                   TCGA-G3-A25W 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25X                   TCGA-G3-A25Y 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A25Z                   TCGA-G3-A3CG 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-G3-A3CH                   TCGA-G3-A3CI 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A3CJ                   TCGA-G3-A3CK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
[1] "hr=" "2"  
D48V2, continuous
D48V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) CNV         15   29
  DEL PEAK 22(17P12) WILD-TYPE   10   18
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  FEMALE                     15                           10
  MALE                       29                           18
                              vv
clus                           R0 R1 R2 RX
  DEL PEAK 22(17P12) CNV       30  6  1  5
  DEL PEAK 22(17P12) WILD-TYPE 20  2  0  3
D48V4, multiclass
    clus
vv   DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  R0                     30                           20
  R1                      6                            2
  R2                      1                            0
  RX                      5                            3

Clustering(49) Variable = Del Peak 23(18q21.2)
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(18Q21.2) CNV        8  6
  DEL PEAK 23(18Q21.2) WILD-TYPE 32 20
      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                            14                             52 
      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                             6                             20 
$`DEL PEAK 23(18Q21.2) CNV`
TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF 
       10.13        27.52         5.03        37.61        13.81         0.26 
TCGA-CC-A3MB TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1EJ TCGA-DD-A1EL 
        0.10        22.78         2.60         0.46        29.16        13.64 
TCGA-ES-A2HS TCGA-G3-A25S 
       22.85         1.22 

$`DEL PEAK 23(18Q21.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W 
       48.99        11.57        37.32        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A3KG TCGA-CC-5258 
       25.32        23.34         1.12        69.57         8.28         0.07 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 
        4.24         0.07         0.13        55.17        37.74        83.57 
TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
       53.29         7.33        21.44        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI 
       66.31        19.76        53.52         6.67        34.06         6.02 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        4.24         3.62         3.65         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U 
        0.43        14.40        19.07         0.13        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       14.27        12.82        44.68        14.86         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        6.31         5.88         4.47         0.89 

      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                          0.10                           0.07 
      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                         37.61                          90.67 
      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                        11.885                         13.545 
[1] "0.1 - 37.6 (11.9)" "0.1 - 90.7 (13.5)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 23(18Q21.2) CNV" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 23(18Q21.2) CNV"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 23(18Q21.2) WILD-TYPE"       "DEL PEAK 23(18Q21.2) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
[1] "hr=" "2.5"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) CNV          6    8
  DEL PEAK 23(18Q21.2) WILD-TYPE   19   39
        clus
vv       DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE
  FEMALE                        6                             19
  MALE                          8                             39
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 23(18Q21.2) CNV       11  2  0  1
  DEL PEAK 23(18Q21.2) WILD-TYPE 39  6  1  7
D49V4, multiclass
    clus
vv   DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE
  R0                       11                             39
  R1                        2                              6
  R2                        0                              1
  RX                        1                              7

Clustering(50) Variable = Del Peak 24(19p13.3)
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(19P13.3) CNV       11  5
  DEL PEAK 24(19P13.3) WILD-TYPE 29 21
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            16                             50 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                             5                             21 
$`DEL PEAK 24(19P13.3) CNV`
TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MC 
        2.99         5.03         0.26         0.07         4.24         0.13 
TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A1EI TCGA-DD-A1EJ 
       55.17        83.57        22.78         2.60         6.02        29.16 
TCGA-DD-A1EL TCGA-G3-A25S TCGA-G3-A25X TCGA-G3-A3CH 
       13.64         1.22        44.68         6.31 

$`DEL PEAK 24(19P13.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        11.57        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 
       27.52        25.32        23.34         1.12        69.57        37.61 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A116 
       13.81         8.28         0.07         0.10        37.74        53.29 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        7.33         0.46        21.44        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-EP-A12J 
       66.31        19.76        53.52         6.67        34.06         4.24 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        3.62         3.65         1.97         0.62         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25T TCGA-G3-A25U 
       22.85        14.40        19.07         0.13        38.63        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI 
       14.27        12.82        14.86         8.84         8.32         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK 
        4.47         0.89 

      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                          0.07                           0.07 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                         83.57                          90.67 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                         5.525                         14.335 
[1] "0.1 - 83.6 (5.5)"  "0.1 - 90.7 (14.3)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) CNV          5   13
  DEL PEAK 24(19P13.3) WILD-TYPE   20   34
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  FEMALE                        5                             20
  MALE                         13                             34
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 24(19P13.3) CNV       13  2  0  2
  DEL PEAK 24(19P13.3) WILD-TYPE 37  6  1  6
D50V4, multiclass
    clus
vv   DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  R0                       13                             37
  R1                        2                              6
  R2                        0                              1
  RX                        2                              6

Clustering(51) Variable = Del Peak 25(22q12.1)
D51V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(22Q12.1) CNV        8  3
  DEL PEAK 25(22Q12.1) WILD-TYPE 32 23
      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                            11                             55 
      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                             3                             23 
$`DEL PEAK 25(22Q12.1) CNV`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A217 TCGA-BC-A3KF TCGA-DD-A113 TCGA-DD-A114 
       37.32        27.52        13.81         0.26        55.17        37.74 
TCGA-DD-A11A TCGA-DD-A1EB TCGA-EP-A2KB TCGA-G3-A25S TCGA-G3-A25T 
        2.60        66.31         1.97         1.22        38.63 

$`DEL PEAK 25(22Q12.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        11.57        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        37.61 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        8.28         0.07         4.24         0.07         0.10         0.13 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C 
       83.57        53.29        22.78         7.33         0.46        21.44 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       51.25        90.67        79.36        19.76        53.52         6.67 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S 
       34.06         6.02        29.16        13.64         4.24         3.62 
TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT 
        3.65         0.62         3.19         0.43        22.85        14.40 
TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X 
       19.07         0.13        40.47        14.27        12.82        44.68 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       14.86         8.84         8.32         6.31         5.88         4.47 
TCGA-G3-A3CK 
        0.89 

      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                         66.31                          90.67 
      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                         27.52                          11.57 
[1] "0.3 - 66.3 (27.5)" "0.1 - 90.7 (11.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 25(22Q12.1) CNV"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 25(22Q12.1) CNV"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 25(22Q12.1) CNV"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 25(22Q12.1) CNV"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
      "DEL PEAK 25(22Q12.1) CNV"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A3MA 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
      "DEL PEAK 25(22Q12.1) CNV"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EH                     TCGA-DD-A1EI 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EJ                     TCGA-DD-A1EL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-G3-A25S 
"DEL PEAK 25(22Q12.1) WILD-TYPE"       "DEL PEAK 25(22Q12.1) CNV" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
      "DEL PEAK 25(22Q12.1) CNV" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
[1] "hr=" "1.8"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(22Q12.1) CNV          8    6
  DEL PEAK 25(22Q12.1) WILD-TYPE   17   41
        clus
vv       DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE
  FEMALE                        8                             17
  MALE                          6                             41
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 25(22Q12.1) CNV        8  3  0  2
  DEL PEAK 25(22Q12.1) WILD-TYPE 42  5  1  6
D51V4, multiclass
    clus
vv   DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE
  R0                        8                             42
  R1                        3                              5
  R2                        0                              1
  RX                        2                              6

Clustering(52) Variable = Del Peak 26(22q13.32)
D52V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 26(22Q13.32) CNV        9  6
  DEL PEAK 26(22Q13.32) WILD-TYPE 31 20
      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                             15                              51 
      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                              6                              20 
$`DEL PEAK 26(22Q13.32) CNV`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
       37.32        27.52        23.34        13.81         0.26         8.28 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A1EB TCGA-EP-A2KB TCGA-FV-A2QR 
       55.17        37.74        83.57        66.31         1.97        19.07 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A3CJ 
        1.22        38.63         4.47 

$`DEL PEAK 26(22Q13.32) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        11.57        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-CC-5258 
       25.32         1.12        69.57         5.03        37.61         0.07 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A116 TCGA-DD-A118 
        4.24         0.07         0.10         0.13        53.29        22.78 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 
        7.33         2.60         0.46        21.44        51.25        90.67 
TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI 
       79.36        19.76        53.52         6.67        34.06         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC 
       29.16        13.64         4.24         3.62         3.65         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-G3-A25U 
        3.19         0.43        22.85        14.40         0.13        40.47 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       14.27        12.82        44.68        14.86         8.84         8.32 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK 
        6.31         5.88         0.89 

      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                           0.26                            0.07 
      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                          83.57                           90.67 
      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                          23.34                           10.13 
[1] "0.3 - 83.6 (23.3)" "0.1 - 90.7 (10.1)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 26(22Q13.32) CNV"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
      "DEL PEAK 26(22Q13.32) CNV"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 26(22Q13.32) CNV"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
      "DEL PEAK 26(22Q13.32) CNV"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
      "DEL PEAK 26(22Q13.32) CNV"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A3MA 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
      "DEL PEAK 26(22Q13.32) CNV"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-DD-A115                      TCGA-DD-A116 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EH                      TCGA-DD-A1EI 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EJ                      TCGA-DD-A1EL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-FV-A3R3                      TCGA-G3-A25S 
"DEL PEAK 26(22Q13.32) WILD-TYPE"       "DEL PEAK 26(22Q13.32) CNV" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
      "DEL PEAK 26(22Q13.32) CNV" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
[1] "hr=" "1.4"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(22Q13.32) CNV          9    9
  DEL PEAK 26(22Q13.32) WILD-TYPE   16   38
        clus
vv       DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE
  FEMALE                         9                              16
  MALE                           9                              38
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 26(22Q13.32) CNV       11  3  0  3
  DEL PEAK 26(22Q13.32) WILD-TYPE 39  5  1  5
D52V4, multiclass
    clus
vv   DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE
  R0                        11                              39
  R1                         3                               5
  R2                         0                               1
  RX                         3                               5

Clustering(53) Variable = Del Peak 27(Xq27.3)
D53V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 27(XQ27.3) CNV        5  7
  DEL PEAK 27(XQ27.3) WILD-TYPE 35 19
      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                           12                            54 
      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                            7                            19 
$`DEL PEAK 27(XQ27.3) CNV`
TCGA-BC-A10R TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
       10.13         1.12         5.03        13.81         0.26         8.28 
TCGA-CC-5258 TCGA-CC-A3MA TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A1EL 
        0.07         0.07        83.57        53.29         0.46        13.64 

$`DEL PEAK 27(XQ27.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        11.57        37.32        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A216 TCGA-CC-5263 
        2.99        25.32        23.34        69.57        37.61         4.24 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A118 TCGA-DD-A119 
        0.10         0.13        55.17        37.74        22.78         7.33 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        2.60        21.44        51.25        90.67        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ 
       19.76        53.52         6.67        34.06         6.02        29.16 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        4.24         3.62         3.65         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-G3-A25S 
        0.43        22.85        14.40        19.07         0.13         1.22 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y 
       38.63        40.47        14.27        12.82        44.68        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
        8.84         8.32         6.31         5.88         4.47         0.89 

      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                        83.57                         90.67 
      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                        6.655                        14.630 
[1] "0.1 - 83.6 (6.7)"  "0.1 - 90.7 (14.6)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "DEL PEAK 27(XQ27.3) CNV" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 27(XQ27.3) CNV" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "DEL PEAK 27(XQ27.3) CNV" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 27(XQ27.3) CNV" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
      "DEL PEAK 27(XQ27.3) CNV" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
      "DEL PEAK 27(XQ27.3) CNV" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-CC-5263                    TCGA-CC-A3MA 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
      "DEL PEAK 27(XQ27.3) CNV"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EH                    TCGA-DD-A1EI 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EJ                    TCGA-DD-A1EL 
"DEL PEAK 27(XQ27.3) WILD-TYPE"       "DEL PEAK 27(XQ27.3) CNV" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-G3-A25S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
[1] "hr=" "2.3"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XQ27.3) CNV          5    7
  DEL PEAK 27(XQ27.3) WILD-TYPE   20   40
        clus
vv       DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE
  FEMALE                       5                            20
  MALE                         7                            40
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 27(XQ27.3) CNV       10  0  0  2
  DEL PEAK 27(XQ27.3) WILD-TYPE 40  8  1  6
D53V4, multiclass
    clus
vv   DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE
  R0                      10                            40
  R1                       0                             8
  R2                       0                             1
  RX                       2                             6
                       V1.D                          V2 
            "Time to Death"                       "AGE" 
                         V3                          V4 
                   "GENDER" "COMPLETENESS.OF.RESECTION" 
> q(save="no")
