
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/411564/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LIHC-TP/3144268/1.GDAC_mergedClustering.Finished/LIHC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LIHC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LIHC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=99, in cluster file=97, common to both=97
[1] 53 97
[1] "Amp Peak  1(1p22.3)"
[1] 3
      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                           24                            73 
      AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE 
                           24                            73 
[1] "Amp Peak  2(1q22)"
[1] 3
      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                         72                          25 
      AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE 
                         72                          25 
[1] "Amp Peak  3(1q42.3)"
[1] 3
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           65                            32 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           65                            32 
[1] "Amp Peak  4(2p24.1)"
[1] 3
      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                           22                            75 
      AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE 
                           22                            75 
[1] "Amp Peak  5(2q33.1)"
[1] 3
      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                           20                            77 
      AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE 
                           20                            77 
[1] "Amp Peak  6(3q26.31)"
[1] 3
      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                            20                             77 
      AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE 
                            20                             77 
[1] "Amp Peak  7(4q31.3)"
[1] 3
      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            89 
      AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            89 
[1] "Amp Peak  8(5p15.33)"
[1] 3
      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                            48                             49 
      AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE 
                            48                             49 
[1] "Amp Peak  9(5q35.3)"
[1] 3
      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                           37                            60 
      AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE 
                           37                            60 
[1] "Amp Peak 10(6p25.2)"
[1] 3
      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                           42                            55 
      AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE 
                           42                            55 
[1] "Amp Peak 11(6p21.1)"
[1] 3
      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                           43                            54 
      AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE 
                           43                            54 
[1] "Amp Peak 12(6q12)"
[1] 3
      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                         32                          65 
      AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE 
                         32                          65 
[1] "Amp Peak 13(7q21.2)"
[1] 3
      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                           36                            61 
      AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE 
                           36                            61 
[1] "Amp Peak 14(8q13.1)"
[1] 3
      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                           49                            48 
      AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE 
                           49                            48 
[1] "Amp Peak 15(8q24.13)"
[1] 3
      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                            60                             37 
      AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE 
                            60                             37 
[1] "Amp Peak 16(10p15.1)"
[1] 3
      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                            19                             78 
      AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE 
                            19                             78 
[1] "Amp Peak 17(11q13.3)"
[1] 3
      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                            17                             80 
      AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE 
                            17                             80 
[1] "Amp Peak 18(12q23.1)"
[1] 3
      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                            19                             78 
      AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE 
                            19                             78 
[1] "Amp Peak 19(13q32.3)"
[1] 3
      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                            22                             75 
      AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE 
                            22                             75 
[1] "Amp Peak 20(15q21.3)"
[1] 3
      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                            15                             82 
      AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE 
                            15                             82 
[1] "Amp Peak 21(15q26.3)"
[1] 3
      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                            15                             82 
      AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE 
                            15                             82 
[1] "Amp Peak 22(17p11.2)"
[1] 3
      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                            15                             82 
      AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE 
                            15                             82 
[1] "Amp Peak 23(17q23.1)"
[1] 3
      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                            40                             57 
      AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE 
                            40                             57 
[1] "Amp Peak 24(17q25.3)"
[1] 3
      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                            44                             53 
      AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE 
                            44                             53 
[1] "Amp Peak 25(19q13.11)"
[1] 3
      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                             31                              66 
      AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE 
                             31                              66 
[1] "Amp Peak 26(20q13.13)"
[1] 3
      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                             35                              62 
      AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE 
                             35                              62 
[1] "Del Peak  1(1p36.32)"
[1] 3
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                            45                             52 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                            45                             52 
[1] "Del Peak  2(2q22.1)"
[1] 3
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                           10                            87 
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                           10                            87 
[1] "Del Peak  3(2q37.3)"
[1] 3
      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                           16                            81 
      DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE 
                           16                            81 
[1] "Del Peak  4(3p13)"
[1] 3
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                         16                          81 
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                         16                          81 
[1] "Del Peak  5(4q24)"
[1] 3
      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                         41                          56 
      DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE 
                         41                          56 
[1] "Del Peak  6(4q35.1)"
[1] 3
      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                           42                            55 
      DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE 
                           42                            55 
[1] "Del Peak  7(5q23.1)"
[1] 3
      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                           14                            83 
      DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE 
                           14                            83 
[1] "Del Peak  8(6q16.3)"
[1] 3
      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                           36                            61 
      DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE 
                           36                            61 
[1] "Del Peak  9(6q26)"
[1] 3
      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                         39                          58 
      DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE 
                         39                          58 
[1] "Del Peak 10(8p23.2)"
[1] 3
      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                           60                            37 
      DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE 
                           60                            37 
[1] "Del Peak 11(9p21.3)"
[1] 3
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           39                            58 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           39                            58 
[1] "Del Peak 12(10p15.3)"
[1] 3
      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                             8                             89 
      DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE 
                             8                             89 
[1] "Del Peak 13(10q23.31)"
[1] 3
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             31                              66 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             31                              66 
[1] "Del Peak 14(10q24.33)"
[1] 3
      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                             29                              68 
      DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE 
                             29                              68 
[1] "Del Peak 15(11q14.1)"
[1] 3
      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                            18                             79 
      DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE 
                            18                             79 
[1] "Del Peak 16(12p12.1)"
[1] 3
      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                            23                             74 
      DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE 
                            23                             74 
[1] "Del Peak 17(12q24.33)"
[1] 3
      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                             16                              81 
      DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE 
                             16                              81 
[1] "Del Peak 18(13q14.2)"
[1] 3
      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                            43                             54 
      DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE 
                            43                             54 
[1] "Del Peak 19(14q23.3)"
[1] 3
      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                            36                             61 
      DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE 
                            36                             61 
[1] "Del Peak 20(15q15.1)"
[1] 3
      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                            18                             79 
      DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE 
                            18                             79 
[1] "Del Peak 21(16q23.1)"
[1] 3
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                            42                             55 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                            42                             55 
[1] "Del Peak 22(17p12)"
[1] 3
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          57                           40 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          57                           40 
[1] "Del Peak 23(18q21.2)"
[1] 3
      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                            18                             79 
      DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE 
                            18                             79 
[1] "Del Peak 24(19p13.3)"
[1] 3
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            20                             77 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            20                             77 
[1] "Del Peak 25(22q12.1)"
[1] 3
      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                            18                             79 
      DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE 
                            18                             79 
[1] "Del Peak 26(22q13.32)"
[1] 3
      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                             24                              73 
      DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE 
                             24                              73 
[1] "Del Peak 27(Xq27.3)"
[1] 3
      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                           14                            83 
      DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE 
                           14                            83 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 6 rows and 97 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 97 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=9, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p22.3)
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                       5                            23
  CLUS_2                       6                            30
  CLUS_3                      13                            20
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                       3                            20
  CLUS_2                       8                            20
  CLUS_3                      13                            32
D1V3, multiclass
D1V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) CNV         11    8
  AMP PEAK  1(1P22.3) WILD-TYPE   18   32
        clus
vv       AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                      11                            18
  CLUS_2                       8                            32
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                       8                            24
  CLUS_2                       2                            17
  CLUS_3                      14                            29
D1V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) CNV         23    1
  AMP PEAK  1(1P22.3) WILD-TYPE   60   10
        clus
vv       AMP PEAK  1(1P22.3) CNV AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                       1                            10
  CLUS_2                      23                            60

Clustering(2) Variable = Amp Peak  2(1q22)
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                    25                           3
  CLUS_2                    19                          17
  CLUS_3                    28                           5
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                    10                          13
  CLUS_2                    23                           5
  CLUS_3                    39                           6
D2V3, multiclass
D2V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) CNV         23   29
  AMP PEAK  2(1Q22) WILD-TYPE    6   11
        clus
vv       AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                    23                           6
  CLUS_2                    29                          11
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                    21                          11
  CLUS_2                    15                           4
  CLUS_3                    34                           9
D2V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) CNV         61    9
  AMP PEAK  2(1Q22) WILD-TYPE   22    2
        clus
vv       AMP PEAK  2(1Q22) CNV AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                     9                           2
  CLUS_2                    61                          22

Clustering(3) Variable = Amp Peak  3(1q42.3)
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                      24                             4
  CLUS_2                      17                            19
  CLUS_3                      24                             9
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                      10                            13
  CLUS_2                      19                             9
  CLUS_3                      36                             9
D3V3, multiclass
D3V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) CNV         19   24
  AMP PEAK  3(1Q42.3) WILD-TYPE   10   16
        clus
vv       AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                      19                            10
  CLUS_2                      24                            16
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                      19                            13
  CLUS_2                      13                             6
  CLUS_3                      31                            12
D3V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) CNV         57    6
  AMP PEAK  3(1Q42.3) WILD-TYPE   26    5
        clus
vv       AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                       6                             5
  CLUS_2                      57                            26

Clustering(4) Variable = Amp Peak  4(2p24.1)
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                       5                            23
  CLUS_2                       6                            30
  CLUS_3                      11                            22
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                       7                            16
  CLUS_2                       4                            24
  CLUS_3                      10                            35
D4V3, multiclass
D4V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) CNV          9    7
  AMP PEAK  4(2P24.1) WILD-TYPE   20   33
        clus
vv       AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                       9                            20
  CLUS_2                       7                            33
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                      10                            22
  CLUS_2                       5                            14
  CLUS_3                       6                            37
D4V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) CNV         18    3
  AMP PEAK  4(2P24.1) WILD-TYPE   65    8
        clus
vv       AMP PEAK  4(2P24.1) CNV AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                       3                             8
  CLUS_2                      18                            65

Clustering(5) Variable = Amp Peak  5(2q33.1)
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                       4                            24
  CLUS_2                       6                            30
  CLUS_3                      10                            23
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                       6                            17
  CLUS_2                       4                            24
  CLUS_3                       9                            36
D5V3, multiclass
D5V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q33.1) CNV          7    8
  AMP PEAK  5(2Q33.1) WILD-TYPE   22   32
        clus
vv       AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                       7                            22
  CLUS_2                       8                            32
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                       8                            24
  CLUS_2                       4                            15
  CLUS_3                       7                            36
D5V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q33.1) CNV         17    2
  AMP PEAK  5(2Q33.1) WILD-TYPE   66    9
        clus
vv       AMP PEAK  5(2Q33.1) CNV AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                       2                             9
  CLUS_2                      17                            66

Clustering(6) Variable = Amp Peak  6(3q26.31)
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                        4                             24
  CLUS_2                        3                             33
  CLUS_3                       13                             20
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                        3                             20
  CLUS_2                        4                             24
  CLUS_3                       12                             33
D6V3, multiclass
D6V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) CNV          7   10
  AMP PEAK  6(3Q26.31) WILD-TYPE   22   30
        clus
vv       AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                        7                             22
  CLUS_2                       10                             30
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                        6                             26
  CLUS_2                        6                             13
  CLUS_3                        7                             36
D6V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) CNV         15    4
  AMP PEAK  6(3Q26.31) WILD-TYPE   68    7
        clus
vv       AMP PEAK  6(3Q26.31) CNV AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                        4                              7
  CLUS_2                       15                             68

Clustering(7) Variable = Amp Peak  7(4q31.3)
D7V1, multiclass
        clus
vv       AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                       1                            27
  CLUS_2                       3                            33
  CLUS_3                       4                            29
D7V2, multiclass
        clus
vv       AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                       2                            21
  CLUS_2                       2                            26
  CLUS_3                       4                            41
D7V3, multiclass
D7V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4Q31.3) CNV          5    2
  AMP PEAK  7(4Q31.3) WILD-TYPE   24   38
        clus
vv       AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                       5                            24
  CLUS_2                       2                            38
D7V5, multiclass
        clus
vv       AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                       3                            29
  CLUS_2                       4                            15
  CLUS_3                       1                            42
D7V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4Q31.3) CNV          6    2
  AMP PEAK  7(4Q31.3) WILD-TYPE   77    9
        clus
vv       AMP PEAK  7(4Q31.3) CNV AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                       2                             9
  CLUS_2                       6                            77

Clustering(8) Variable = Amp Peak  8(5p15.33)
D8V1, multiclass
        clus
vv       AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                       19                              9
  CLUS_2                       10                             26
  CLUS_3                       19                             14
D8V2, multiclass
        clus
vv       AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                        9                             14
  CLUS_2                       15                             13
  CLUS_3                       24                             21
D8V3, multiclass
D8V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(5P15.33) CNV         17   15
  AMP PEAK  8(5P15.33) WILD-TYPE   12   25
        clus
vv       AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                       17                             12
  CLUS_2                       15                             25
D8V5, multiclass
        clus
vv       AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                       13                             19
  CLUS_2                       12                              7
  CLUS_3                       22                             21
D8V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(5P15.33) CNV         40    7
  AMP PEAK  8(5P15.33) WILD-TYPE   43    4
        clus
vv       AMP PEAK  8(5P15.33) CNV AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                        7                              4
  CLUS_2                       40                             43

Clustering(9) Variable = Amp Peak  9(5q35.3)
D9V1, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                      15                            13
  CLUS_2                       8                            28
  CLUS_3                      14                            19
D9V2, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                       6                            17
  CLUS_2                      12                            16
  CLUS_3                      19                            26
D9V3, multiclass
D9V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(5Q35.3) CNV         12   12
  AMP PEAK  9(5Q35.3) WILD-TYPE   17   28
        clus
vv       AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                      12                            17
  CLUS_2                      12                            28
D9V5, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                      12                            20
  CLUS_2                       7                            12
  CLUS_3                      16                            27
D9V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(5Q35.3) CNV         31    4
  AMP PEAK  9(5Q35.3) WILD-TYPE   52    7
        clus
vv       AMP PEAK  9(5Q35.3) CNV AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                       4                             7
  CLUS_2                      31                            52

Clustering(10) Variable = Amp Peak 10(6p25.2)
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                      13                            15
  CLUS_2                       9                            27
  CLUS_3                      20                            13
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                       3                            20
  CLUS_2                      15                            13
  CLUS_3                      23                            22
D10V3, multiclass
D10V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P25.2) CNV         17   15
  AMP PEAK 10(6P25.2) WILD-TYPE   12   25
        clus
vv       AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                      17                            12
  CLUS_2                      15                            25
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                      13                            19
  CLUS_2                       7                            12
  CLUS_3                      20                            23
D10V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P25.2) CNV         36    4
  AMP PEAK 10(6P25.2) WILD-TYPE   47    7
        clus
vv       AMP PEAK 10(6P25.2) CNV AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                       4                             7
  CLUS_2                      36                            47

Clustering(11) Variable = Amp Peak 11(6p21.1)
D11V1, multiclass
        clus
vv       AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                      13                            15
  CLUS_2                       8                            28
  CLUS_3                      22                            11
D11V2, multiclass
        clus
vv       AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                       2                            21
  CLUS_2                      12                            16
  CLUS_3                      28                            17
D11V3, multiclass
D11V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(6P21.1) CNV         12   22
  AMP PEAK 11(6P21.1) WILD-TYPE   17   18
        clus
vv       AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                      12                            17
  CLUS_2                      22                            18
D11V5, multiclass
        clus
vv       AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                      11                            21
  CLUS_2                       9                            10
  CLUS_3                      22                            21
D11V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(6P21.1) CNV         37    5
  AMP PEAK 11(6P21.1) WILD-TYPE   46    6
        clus
vv       AMP PEAK 11(6P21.1) CNV AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                       5                             6
  CLUS_2                      37                            46

Clustering(12) Variable = Amp Peak 12(6q12)
D12V1, multiclass
        clus
vv       AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                    10                          18
  CLUS_2                     7                          29
  CLUS_3                    15                          18
D12V2, multiclass
        clus
vv       AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                     3                          20
  CLUS_2                     8                          20
  CLUS_3                    20                          25
D12V3, multiclass
D12V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 12(6Q12) CNV         10   13
  AMP PEAK 12(6Q12) WILD-TYPE   19   27
        clus
vv       AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                    10                          19
  CLUS_2                    13                          27
D12V5, multiclass
        clus
vv       AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                     7                          25
  CLUS_2                     5                          14
  CLUS_3                    20                          23
D12V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 12(6Q12) CNV         30    2
  AMP PEAK 12(6Q12) WILD-TYPE   53    9
        clus
vv       AMP PEAK 12(6Q12) CNV AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                     2                           9
  CLUS_2                    30                          53

Clustering(13) Variable = Amp Peak 13(7q21.2)
D13V1, multiclass
        clus
vv       AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                      14                            14
  CLUS_2                      11                            25
  CLUS_3                      11                            22
D13V2, multiclass
        clus
vv       AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                      10                            13
  CLUS_2                       5                            23
  CLUS_3                      20                            25
D13V3, multiclass
D13V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) CNV         13   11
  AMP PEAK 13(7Q21.2) WILD-TYPE   16   29
        clus
vv       AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                      13                            16
  CLUS_2                      11                            29
D13V5, multiclass
        clus
vv       AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                      12                            20
  CLUS_2                       5                            14
  CLUS_3                      17                            26
D13V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) CNV         32    2
  AMP PEAK 13(7Q21.2) WILD-TYPE   51    9
        clus
vv       AMP PEAK 13(7Q21.2) CNV AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                       2                             9
  CLUS_2                      32                            51

Clustering(14) Variable = Amp Peak 14(8q13.1)
D14V1, multiclass
        clus
vv       AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                      27                             1
  CLUS_2                      10                            26
  CLUS_3                      12                            21
D14V2, multiclass
        clus
vv       AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                      12                            11
  CLUS_2                      13                            15
  CLUS_3                      23                            22
D14V3, multiclass
D14V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(8Q13.1) CNV         15   20
  AMP PEAK 14(8Q13.1) WILD-TYPE   14   20
        clus
vv       AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                      15                            14
  CLUS_2                      20                            20
D14V5, multiclass
        clus
vv       AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                      16                            16
  CLUS_2                       7                            12
  CLUS_3                      24                            19
D14V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(8Q13.1) CNV         43    4
  AMP PEAK 14(8Q13.1) WILD-TYPE   40    7
        clus
vv       AMP PEAK 14(8Q13.1) CNV AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                       4                             7
  CLUS_2                      43                            40

Clustering(15) Variable = Amp Peak 15(8q24.13)
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                       28                              0
  CLUS_2                       15                             21
  CLUS_3                       17                             16
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                       14                              9
  CLUS_2                       19                              9
  CLUS_3                       26                             19
D15V3, multiclass
D15V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.13) CNV         16   25
  AMP PEAK 15(8Q24.13) WILD-TYPE   13   15
        clus
vv       AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                       16                             13
  CLUS_2                       25                             15
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                       21                             11
  CLUS_2                        9                             10
  CLUS_3                       28                             15
D15V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.13) CNV         52    6
  AMP PEAK 15(8Q24.13) WILD-TYPE   31    5
        clus
vv       AMP PEAK 15(8Q24.13) CNV AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                        6                              5
  CLUS_2                       52                             31

Clustering(16) Variable = Amp Peak 16(10p15.1)
D16V1, multiclass
        clus
vv       AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                        3                             25
  CLUS_2                        6                             30
  CLUS_3                       10                             23
D16V2, multiclass
        clus
vv       AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                        4                             19
  CLUS_2                        8                             20
  CLUS_3                        6                             39
D16V3, multiclass
D16V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(10P15.1) CNV         10    4
  AMP PEAK 16(10P15.1) WILD-TYPE   19   36
        clus
vv       AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                       10                             19
  CLUS_2                        4                             36
D16V5, multiclass
        clus
vv       AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                        9                             23
  CLUS_2                        3                             16
  CLUS_3                        7                             36
D16V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(10P15.1) CNV         16    3
  AMP PEAK 16(10P15.1) WILD-TYPE   67    8
        clus
vv       AMP PEAK 16(10P15.1) CNV AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                        3                              8
  CLUS_2                       16                             67

Clustering(17) Variable = Amp Peak 17(11q13.3)
D17V1, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                        3                             25
  CLUS_2                        6                             30
  CLUS_3                        8                             25
D17V2, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                        4                             19
  CLUS_2                        3                             25
  CLUS_3                       10                             35
D17V3, multiclass
D17V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q13.3) CNV          5    5
  AMP PEAK 17(11Q13.3) WILD-TYPE   24   35
        clus
vv       AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                        5                             24
  CLUS_2                        5                             35
D17V5, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                        8                             24
  CLUS_2                        5                             14
  CLUS_3                        4                             39
D17V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q13.3) CNV         13    4
  AMP PEAK 17(11Q13.3) WILD-TYPE   70    7
        clus
vv       AMP PEAK 17(11Q13.3) CNV AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                        4                              7
  CLUS_2                       13                             70

Clustering(18) Variable = Amp Peak 18(12q23.1)
D18V1, multiclass
        clus
vv       AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                        5                             23
  CLUS_2                        1                             35
  CLUS_3                       13                             20
D18V2, multiclass
        clus
vv       AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                        1                             22
  CLUS_2                        6                             22
  CLUS_3                       12                             33
D18V3, multiclass
D18V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(12Q23.1) CNV          8    5
  AMP PEAK 18(12Q23.1) WILD-TYPE   21   35
        clus
vv       AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                        8                             21
  CLUS_2                        5                             35
D18V5, multiclass
        clus
vv       AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                        6                             26
  CLUS_2                        2                             17
  CLUS_3                       11                             32
D18V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(12Q23.1) CNV         18    1
  AMP PEAK 18(12Q23.1) WILD-TYPE   65   10
        clus
vv       AMP PEAK 18(12Q23.1) CNV AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                        1                             10
  CLUS_2                       18                             65

Clustering(19) Variable = Amp Peak 19(13q32.3)
D19V1, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                        6                             22
  CLUS_2                        2                             34
  CLUS_3                       14                             19
D19V2, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                        2                             21
  CLUS_2                        9                             19
  CLUS_3                       11                             34
D19V3, multiclass
D19V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q32.3) CNV          9    6
  AMP PEAK 19(13Q32.3) WILD-TYPE   20   34
        clus
vv       AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                        9                             20
  CLUS_2                        6                             34
D19V5, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                        6                             26
  CLUS_2                        6                             13
  CLUS_3                       10                             33
D19V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q32.3) CNV         17    5
  AMP PEAK 19(13Q32.3) WILD-TYPE   66    6
        clus
vv       AMP PEAK 19(13Q32.3) CNV AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                        5                              6
  CLUS_2                       17                             66

Clustering(20) Variable = Amp Peak 20(15q21.3)
D20V1, multiclass
        clus
vv       AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                        1                             27
  CLUS_2                        4                             32
  CLUS_3                       10                             23
D20V2, multiclass
        clus
vv       AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                        3                             20
  CLUS_2                        2                             26
  CLUS_3                        9                             36
D20V3, multiclass
D20V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(15Q21.3) CNV          6    6
  AMP PEAK 20(15Q21.3) WILD-TYPE   23   34
        clus
vv       AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                        6                             23
  CLUS_2                        6                             34
D20V5, multiclass
        clus
vv       AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                        6                             26
  CLUS_2                        3                             16
  CLUS_3                        6                             37
D20V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(15Q21.3) CNV         14    1
  AMP PEAK 20(15Q21.3) WILD-TYPE   69   10
        clus
vv       AMP PEAK 20(15Q21.3) CNV AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                        1                             10
  CLUS_2                       14                             69

Clustering(21) Variable = Amp Peak 21(15q26.3)
D21V1, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                        1                             27
  CLUS_2                        5                             31
  CLUS_3                        9                             24
D21V2, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                        4                             19
  CLUS_2                        3                             25
  CLUS_3                        7                             38
D21V3, multiclass
D21V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.3) CNV          6    6
  AMP PEAK 21(15Q26.3) WILD-TYPE   23   34
        clus
vv       AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                        6                             23
  CLUS_2                        6                             34
D21V5, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                        6                             26
  CLUS_2                        3                             16
  CLUS_3                        6                             37
D21V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.3) CNV         14    1
  AMP PEAK 21(15Q26.3) WILD-TYPE   69   10
        clus
vv       AMP PEAK 21(15Q26.3) CNV AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                        1                             10
  CLUS_2                       14                             69

Clustering(22) Variable = Amp Peak 22(17p11.2)
D22V1, multiclass
        clus
vv       AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                        1                             27
  CLUS_2                        3                             33
  CLUS_3                       11                             22
D22V2, multiclass
        clus
vv       AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                        3                             20
  CLUS_2                        3                             25
  CLUS_3                        8                             37
D22V3, multiclass
D22V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(17P11.2) CNV          6    4
  AMP PEAK 22(17P11.2) WILD-TYPE   23   36
        clus
vv       AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                        6                             23
  CLUS_2                        4                             36
D22V5, multiclass
        clus
vv       AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                        5                             27
  CLUS_2                        2                             17
  CLUS_3                        8                             35
D22V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(17P11.2) CNV         15    0
  AMP PEAK 22(17P11.2) WILD-TYPE   68   11
        clus
vv       AMP PEAK 22(17P11.2) CNV AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                        0                             11
  CLUS_2                       15                             68

Clustering(23) Variable = Amp Peak 23(17q23.1)
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                        9                             19
  CLUS_2                       11                             25
  CLUS_3                       20                             13
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                        7                             16
  CLUS_2                       13                             15
  CLUS_3                       19                             26
D23V3, multiclass
D23V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17Q23.1) CNV         16   15
  AMP PEAK 23(17Q23.1) WILD-TYPE   13   25
        clus
vv       AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                       16                             13
  CLUS_2                       15                             25
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                       14                             18
  CLUS_2                        7                             12
  CLUS_3                       19                             24
D23V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17Q23.1) CNV         36    4
  AMP PEAK 23(17Q23.1) WILD-TYPE   47    7
        clus
vv       AMP PEAK 23(17Q23.1) CNV AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                        4                              7
  CLUS_2                       36                             47

Clustering(24) Variable = Amp Peak 24(17q25.3)
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                       10                             18
  CLUS_2                       10                             26
  CLUS_3                       24                              9
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                        6                             17
  CLUS_2                       13                             15
  CLUS_3                       24                             21
D24V3, multiclass
D24V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(17Q25.3) CNV         14   18
  AMP PEAK 24(17Q25.3) WILD-TYPE   15   22
        clus
vv       AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                       14                             15
  CLUS_2                       18                             22
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                       15                             17
  CLUS_2                        8                             11
  CLUS_3                       21                             22
D24V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(17Q25.3) CNV         40    4
  AMP PEAK 24(17Q25.3) WILD-TYPE   43    7
        clus
vv       AMP PEAK 24(17Q25.3) CNV AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                        4                              7
  CLUS_2                       40                             43

Clustering(25) Variable = Amp Peak 25(19q13.11)
D25V1, multiclass
        clus
vv       AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                        12                              16
  CLUS_2                         6                              30
  CLUS_3                        13                              20
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                         7                              16
  CLUS_2                        12                              16
  CLUS_3                        11                              34
D25V3, multiclass
D25V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(19Q13.11) CNV         12   11
  AMP PEAK 25(19Q13.11) WILD-TYPE   17   29
        clus
vv       AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                        12                              17
  CLUS_2                        11                              29
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                        12                              20
  CLUS_2                         7                              12
  CLUS_3                        11                              32
D25V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(19Q13.11) CNV         25    5
  AMP PEAK 25(19Q13.11) WILD-TYPE   58    6
        clus
vv       AMP PEAK 25(19Q13.11) CNV AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                         5                               6
  CLUS_2                        25                              58

Clustering(26) Variable = Amp Peak 26(20q13.13)
D26V1, multiclass
        clus
vv       AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                        10                              18
  CLUS_2                         8                              28
  CLUS_3                        17                              16
D26V2, multiclass
        clus
vv       AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                         6                              17
  CLUS_2                        11                              17
  CLUS_3                        17                              28
D26V3, multiclass
D26V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(20Q13.13) CNV         12   13
  AMP PEAK 26(20Q13.13) WILD-TYPE   17   27
        clus
vv       AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                        12                              17
  CLUS_2                        13                              27
D26V5, multiclass
        clus
vv       AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                        11                              21
  CLUS_2                         8                              11
  CLUS_3                        15                              28
D26V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(20Q13.13) CNV         29    5
  AMP PEAK 26(20Q13.13) WILD-TYPE   54    6
        clus
vv       AMP PEAK 26(20Q13.13) CNV AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                         5                               6
  CLUS_2                        29                              54

Clustering(27) Variable = Del Peak  1(1p36.32)
D27V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                       10                             18
  CLUS_2                       13                             23
  CLUS_3                       22                             11
D27V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                        7                             16
  CLUS_2                       19                              9
  CLUS_3                       18                             27
D27V3, multiclass
D27V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) CNV         15   18
  DEL PEAK  1(1P36.32) WILD-TYPE   14   22
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                       15                             14
  CLUS_2                       18                             22
D27V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                       16                             16
  CLUS_2                        7                             12
  CLUS_3                       20                             23
D27V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) CNV         40    3
  DEL PEAK  1(1P36.32) WILD-TYPE   43    8
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                        3                              8
  CLUS_2                       40                             43

Clustering(28) Variable = Del Peak  2(2q22.1)
D28V1, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                       4                            24
  CLUS_2                       2                            34
  CLUS_3                       4                            29
D28V2, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                       3                            20
  CLUS_2                       1                            27
  CLUS_3                       6                            39
D28V3, multiclass
D28V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) CNV          2    5
  DEL PEAK  2(2Q22.1) WILD-TYPE   27   35
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                       2                            27
  CLUS_2                       5                            35
D28V5, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                       1                            31
  CLUS_2                       5                            14
  CLUS_3                       4                            39
D28V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) CNV          7    3
  DEL PEAK  2(2Q22.1) WILD-TYPE   76    8
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                       3                             8
  CLUS_2                       7                            76

Clustering(29) Variable = Del Peak  3(2q37.3)
D29V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                       4                            24
  CLUS_2                       4                            32
  CLUS_3                       8                            25
D29V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                       5                            18
  CLUS_2                       3                            25
  CLUS_3                       8                            37
D29V3, multiclass
D29V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) CNV          4    7
  DEL PEAK  3(2Q37.3) WILD-TYPE   25   33
        clus
vv       DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                       4                            25
  CLUS_2                       7                            33
D29V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                       2                            30
  CLUS_2                       6                            13
  CLUS_3                       8                            35
D29V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) CNV         12    4
  DEL PEAK  3(2Q37.3) WILD-TYPE   71    7
        clus
vv       DEL PEAK  3(2Q37.3) CNV DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                       4                             7
  CLUS_2                      12                            71

Clustering(30) Variable = Del Peak  4(3p13)
D30V1, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     2                          26
  CLUS_2                     5                          31
  CLUS_3                     9                          24
D30V2, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     4                          19
  CLUS_2                     7                          21
  CLUS_3                     5                          40
D30V3, multiclass
D30V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(3P13) CNV         11    1
  DEL PEAK  4(3P13) WILD-TYPE   18   39
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                    11                          18
  CLUS_2                     1                          39
D30V5, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                    10                          22
  CLUS_2                     1                          18
  CLUS_3                     3                          40
D30V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(3P13) CNV         14    0
  DEL PEAK  4(3P13) WILD-TYPE   69   11
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     0                          11
  CLUS_2                    14                          69

Clustering(31) Variable = Del Peak  5(4q24)
D31V1, multiclass
        clus
vv       DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                    13                          15
  CLUS_2                     6                          30
  CLUS_3                    22                          11
D31V2, multiclass
        clus
vv       DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                     6                          17
  CLUS_2                    15                          13
  CLUS_3                    20                          25
D31V3, multiclass
D31V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q24) CNV         15   19
  DEL PEAK  5(4Q24) WILD-TYPE   14   21
        clus
vv       DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                    15                          14
  CLUS_2                    19                          21
D31V5, multiclass
        clus
vv       DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                    17                          15
  CLUS_2                    10                           9
  CLUS_3                    14                          29
D31V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q24) CNV         36    5
  DEL PEAK  5(4Q24) WILD-TYPE   47    6
        clus
vv       DEL PEAK  5(4Q24) CNV DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                     5                           6
  CLUS_2                    36                          47

Clustering(32) Variable = Del Peak  6(4q35.1)
D32V1, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                      11                            17
  CLUS_2                       9                            27
  CLUS_3                      22                            11
D32V2, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                       6                            17
  CLUS_2                      17                            11
  CLUS_3                      19                            26
D32V3, multiclass
D32V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) CNV         16   17
  DEL PEAK  6(4Q35.1) WILD-TYPE   13   23
        clus
vv       DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                      16                            13
  CLUS_2                      17                            23
D32V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                      18                            14
  CLUS_2                       9                            10
  CLUS_3                      15                            28
D32V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) CNV         36    6
  DEL PEAK  6(4Q35.1) WILD-TYPE   47    5
        clus
vv       DEL PEAK  6(4Q35.1) CNV DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                       6                             5
  CLUS_2                      36                            47

Clustering(33) Variable = Del Peak  7(5q23.1)
D33V1, multiclass
        clus
vv       DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                       2                            26
  CLUS_2                       4                            32
  CLUS_3                       8                            25
D33V2, multiclass
        clus
vv       DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                       1                            22
  CLUS_2                       6                            22
  CLUS_3                       6                            39
D33V3, multiclass
D33V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q23.1) CNV          6    3
  DEL PEAK  7(5Q23.1) WILD-TYPE   23   37
        clus
vv       DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                       6                            23
  CLUS_2                       3                            37
D33V5, multiclass
        clus
vv       DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                       4                            28
  CLUS_2                       1                            18
  CLUS_3                       9                            34
D33V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q23.1) CNV         14    0
  DEL PEAK  7(5Q23.1) WILD-TYPE   69   11
        clus
vv       DEL PEAK  7(5Q23.1) CNV DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                       0                            11
  CLUS_2                      14                            69

Clustering(34) Variable = Del Peak  8(6q16.3)
D34V1, multiclass
        clus
vv       DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                      13                            15
  CLUS_2                      10                            26
  CLUS_3                      13                            20
D34V2, multiclass
        clus
vv       DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                       8                            15
  CLUS_2                      12                            16
  CLUS_3                      15                            30
D34V3, multiclass
D34V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6Q16.3) CNV         14   11
  DEL PEAK  8(6Q16.3) WILD-TYPE   15   29
        clus
vv       DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                      14                            15
  CLUS_2                      11                            29
D34V5, multiclass
        clus
vv       DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                      13                            19
  CLUS_2                       5                            14
  CLUS_3                      16                            27
D34V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6Q16.3) CNV         30    4
  DEL PEAK  8(6Q16.3) WILD-TYPE   53    7
        clus
vv       DEL PEAK  8(6Q16.3) CNV DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                       4                             7
  CLUS_2                      30                            53

Clustering(35) Variable = Del Peak  9(6q26)
D35V1, multiclass
        clus
vv       DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                    13                          15
  CLUS_2                    10                          26
  CLUS_3                    16                          17
D35V2, multiclass
        clus
vv       DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                     8                          15
  CLUS_2                    13                          15
  CLUS_3                    17                          28
D35V3, multiclass
D35V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q26) CNV         14   11
  DEL PEAK  9(6Q26) WILD-TYPE   15   29
        clus
vv       DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                    14                          15
  CLUS_2                    11                          29
D35V5, multiclass
        clus
vv       DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                    16                          16
  CLUS_2                     7                          12
  CLUS_3                    14                          29
D35V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q26) CNV         32    5
  DEL PEAK  9(6Q26) WILD-TYPE   51    6
        clus
vv       DEL PEAK  9(6Q26) CNV DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                     5                           6
  CLUS_2                    32                          51

Clustering(36) Variable = Del Peak 10(8p23.2)
D36V1, multiclass
        clus
vv       DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                      27                             1
  CLUS_2                      12                            24
  CLUS_3                      21                            12
D36V2, multiclass
        clus
vv       DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                      12                            11
  CLUS_2                      17                            11
  CLUS_3                      30                            15
D36V3, multiclass
D36V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P23.2) CNV         16   26
  DEL PEAK 10(8P23.2) WILD-TYPE   13   14
        clus
vv       DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                      16                            13
  CLUS_2                      26                            14
D36V5, multiclass
        clus
vv       DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                      19                            13
  CLUS_2                      14                             5
  CLUS_3                      25                            18
D36V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P23.2) CNV         49    9
  DEL PEAK 10(8P23.2) WILD-TYPE   34    2
        clus
vv       DEL PEAK 10(8P23.2) CNV DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                       9                             2
  CLUS_2                      49                            34

Clustering(37) Variable = Del Peak 11(9p21.3)
D37V1, multiclass
        clus
vv       DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                      14                            14
  CLUS_2                      10                            26
  CLUS_3                      15                            18
D37V2, multiclass
        clus
vv       DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                       9                            14
  CLUS_2                      13                            15
  CLUS_3                      17                            28
D37V3, multiclass
D37V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) CNV         16   17
  DEL PEAK 11(9P21.3) WILD-TYPE   13   23
        clus
vv       DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                      16                            13
  CLUS_2                      17                            23
D37V5, multiclass
        clus
vv       DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                      15                            17
  CLUS_2                       9                            10
  CLUS_3                      14                            29
D37V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) CNV         32    6
  DEL PEAK 11(9P21.3) WILD-TYPE   51    5
        clus
vv       DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                       6                             5
  CLUS_2                      32                            51

Clustering(38) Variable = Del Peak 12(10p15.3)
D38V1, multiclass
        clus
vv       DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                        3                             25
  CLUS_2                        2                             34
  CLUS_3                        3                             30
D38V2, multiclass
        clus
vv       DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                        2                             21
  CLUS_2                        3                             25
  CLUS_3                        3                             42
D38V3, multiclass
D38V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(10P15.3) CNV          1    3
  DEL PEAK 12(10P15.3) WILD-TYPE   28   37
        clus
vv       DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                        1                             28
  CLUS_2                        3                             37
D38V5, multiclass
        clus
vv       DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                        3                             29
  CLUS_2                        3                             16
  CLUS_3                        2                             41
D38V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(10P15.3) CNV          6    2
  DEL PEAK 12(10P15.3) WILD-TYPE   77    9
        clus
vv       DEL PEAK 12(10P15.3) CNV DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                        2                              9
  CLUS_2                        6                             77

Clustering(39) Variable = Del Peak 13(10q23.31)
D39V1, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                         5                              23
  CLUS_2                        10                              26
  CLUS_3                        16                              17
D39V2, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                         8                              15
  CLUS_2                         7                              21
  CLUS_3                        16                              29
D39V3, multiclass
D39V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) CNV         14   10
  DEL PEAK 13(10Q23.31) WILD-TYPE   15   30
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                        14                              15
  CLUS_2                        10                              30
D39V5, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                        11                              21
  CLUS_2                        10                               9
  CLUS_3                        10                              33
D39V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) CNV         25    6
  DEL PEAK 13(10Q23.31) WILD-TYPE   58    5
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                         6                               5
  CLUS_2                        25                              58

Clustering(40) Variable = Del Peak 14(10q24.33)
D40V1, multiclass
        clus
vv       DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                         4                              24
  CLUS_2                        11                              25
  CLUS_3                        14                              19
D40V2, multiclass
        clus
vv       DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                         9                              14
  CLUS_2                         8                              20
  CLUS_3                        12                              33
D40V3, multiclass
D40V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q24.33) CNV         12    8
  DEL PEAK 14(10Q24.33) WILD-TYPE   17   32
        clus
vv       DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                        12                              17
  CLUS_2                         8                              32
D40V5, multiclass
        clus
vv       DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                        13                              19
  CLUS_2                         9                              10
  CLUS_3                         7                              36
D40V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q24.33) CNV         23    6
  DEL PEAK 14(10Q24.33) WILD-TYPE   60    5
        clus
vv       DEL PEAK 14(10Q24.33) CNV DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                         6                               5
  CLUS_2                        23                              60

Clustering(41) Variable = Del Peak 15(11q14.1)
D41V1, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                        5                             23
  CLUS_2                        5                             31
  CLUS_3                        8                             25
D41V2, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                        4                             19
  CLUS_2                        4                             24
  CLUS_3                       10                             35
D41V3, multiclass
D41V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11Q14.1) CNV          7    7
  DEL PEAK 15(11Q14.1) WILD-TYPE   22   33
        clus
vv       DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                        7                             22
  CLUS_2                        7                             33
D41V5, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                        5                             27
  CLUS_2                        4                             15
  CLUS_3                        8                             35
D41V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11Q14.1) CNV         15    2
  DEL PEAK 15(11Q14.1) WILD-TYPE   68    9
        clus
vv       DEL PEAK 15(11Q14.1) CNV DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                        2                              9
  CLUS_2                       15                             68

Clustering(42) Variable = Del Peak 16(12p12.1)
D42V1, multiclass
        clus
vv       DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                        9                             19
  CLUS_2                        5                             31
  CLUS_3                        9                             24
D42V2, multiclass
        clus
vv       DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                        5                             18
  CLUS_2                        6                             22
  CLUS_3                       12                             33
D42V3, multiclass
D42V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(12P12.1) CNV          5   13
  DEL PEAK 16(12P12.1) WILD-TYPE   24   27
        clus
vv       DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                        5                             24
  CLUS_2                       13                             27
D42V5, multiclass
        clus
vv       DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                        6                             26
  CLUS_2                        8                             11
  CLUS_3                        8                             35
D42V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(12P12.1) CNV         16    6
  DEL PEAK 16(12P12.1) WILD-TYPE   67    5
        clus
vv       DEL PEAK 16(12P12.1) CNV DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                        6                              5
  CLUS_2                       16                             67

Clustering(43) Variable = Del Peak 17(12q24.33)
D43V1, multiclass
        clus
vv       DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                         6                              22
  CLUS_2                         4                              32
  CLUS_3                         6                              27
D43V2, multiclass
        clus
vv       DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                         4                              19
  CLUS_2                         5                              23
  CLUS_3                         7                              38
D43V3, multiclass
D43V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.33) CNV          4    7
  DEL PEAK 17(12Q24.33) WILD-TYPE   25   33
        clus
vv       DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                         4                              25
  CLUS_2                         7                              33
D43V5, multiclass
        clus
vv       DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                         7                              25
  CLUS_2                         5                              14
  CLUS_3                         4                              39
D43V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.33) CNV         13    3
  DEL PEAK 17(12Q24.33) WILD-TYPE   70    8
        clus
vv       DEL PEAK 17(12Q24.33) CNV DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                         3                               8
  CLUS_2                        13                              70

Clustering(44) Variable = Del Peak 18(13q14.2)
D44V1, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                        9                             19
  CLUS_2                       12                             24
  CLUS_3                       22                             11
D44V2, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                        9                             14
  CLUS_2                       17                             11
  CLUS_3                       17                             28
D44V3, multiclass
D44V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(13Q14.2) CNV         18   15
  DEL PEAK 18(13Q14.2) WILD-TYPE   11   25
        clus
vv       DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                       18                             11
  CLUS_2                       15                             25
D44V5, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                       19                             13
  CLUS_2                       10                              9
  CLUS_3                       13                             30
D44V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(13Q14.2) CNV         36    6
  DEL PEAK 18(13Q14.2) WILD-TYPE   47    5
        clus
vv       DEL PEAK 18(13Q14.2) CNV DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                        6                              5
  CLUS_2                       36                             47

Clustering(45) Variable = Del Peak 19(14q23.3)
D45V1, multiclass
        clus
vv       DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                       10                             18
  CLUS_2                        8                             28
  CLUS_3                       18                             15
D45V2, multiclass
        clus
vv       DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                        8                             15
  CLUS_2                       14                             14
  CLUS_3                       14                             31
D45V3, multiclass
D45V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(14Q23.3) CNV         15   11
  DEL PEAK 19(14Q23.3) WILD-TYPE   14   29
        clus
vv       DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                       15                             14
  CLUS_2                       11                             29
D45V5, multiclass
        clus
vv       DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                       13                             19
  CLUS_2                        8                             11
  CLUS_3                       14                             29
D45V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(14Q23.3) CNV         27    8
  DEL PEAK 19(14Q23.3) WILD-TYPE   56    3
        clus
vv       DEL PEAK 19(14Q23.3) CNV DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                        8                              3
  CLUS_2                       27                             56

Clustering(46) Variable = Del Peak 20(15q15.1)
D46V1, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                        7                             21
  CLUS_2                        1                             35
  CLUS_3                       10                             23
D46V2, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                        3                             20
  CLUS_2                        7                             21
  CLUS_3                        8                             37
D46V3, multiclass
D46V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(15Q15.1) CNV          9    4
  DEL PEAK 20(15Q15.1) WILD-TYPE   20   36
        clus
vv       DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                        9                             20
  CLUS_2                        4                             36
D46V5, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                        6                             26
  CLUS_2                        2                             17
  CLUS_3                        9                             34
D46V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(15Q15.1) CNV         15    2
  DEL PEAK 20(15Q15.1) WILD-TYPE   68    9
        clus
vv       DEL PEAK 20(15Q15.1) CNV DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                        2                              9
  CLUS_2                       15                             68

Clustering(47) Variable = Del Peak 21(16q23.1)
D47V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                        9                             19
  CLUS_2                       10                             26
  CLUS_3                       23                             10
D47V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                        5                             18
  CLUS_2                       18                             10
  CLUS_3                       18                             27
D47V3, multiclass
D47V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) CNV         18   15
  DEL PEAK 21(16Q23.1) WILD-TYPE   11   25
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                       18                             11
  CLUS_2                       15                             25
D47V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                       17                             15
  CLUS_2                        6                             13
  CLUS_3                       18                             25
D47V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) CNV         38    3
  DEL PEAK 21(16Q23.1) WILD-TYPE   45    8
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                        3                              8
  CLUS_2                       38                             45

Clustering(48) Variable = Del Peak 22(17p12)
D48V1, multiclass
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     16                           12
  CLUS_2                     17                           19
  CLUS_3                     24                            9
D48V2, multiclass
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     11                           12
  CLUS_2                     18                           10
  CLUS_3                     27                           18
D48V3, multiclass
D48V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) CNV         15   28
  DEL PEAK 22(17P12) WILD-TYPE   14   12
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     15                           14
  CLUS_2                     28                           12
D48V5, multiclass
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     19                           13
  CLUS_2                     17                            2
  CLUS_3                     20                           23
D48V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) CNV         46   10
  DEL PEAK 22(17P12) WILD-TYPE   37    1
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     10                            1
  CLUS_2                     46                           37

Clustering(49) Variable = Del Peak 23(18q21.2)
D49V1, multiclass
        clus
vv       DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                        4                             24
  CLUS_2                        4                             32
  CLUS_3                       10                             23
D49V2, multiclass
        clus
vv       DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                        1                             22
  CLUS_2                        7                             21
  CLUS_3                        9                             36
D49V3, multiclass
D49V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) CNV          6    9
  DEL PEAK 23(18Q21.2) WILD-TYPE   23   31
        clus
vv       DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                        6                             23
  CLUS_2                        9                             31
D49V5, multiclass
        clus
vv       DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                        5                             27
  CLUS_2                        2                             17
  CLUS_3                       10                             33
D49V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) CNV         15    2
  DEL PEAK 23(18Q21.2) WILD-TYPE   68    9
        clus
vv       DEL PEAK 23(18Q21.2) CNV DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                        2                              9
  CLUS_2                       15                             68

Clustering(50) Variable = Del Peak 24(19p13.3)
D50V1, multiclass
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                        8                             20
  CLUS_2                        3                             33
  CLUS_3                        9                             24
D50V2, multiclass
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                        3                             20
  CLUS_2                       10                             18
  CLUS_3                        7                             38
D50V3, multiclass
D50V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) CNV         10    8
  DEL PEAK 24(19P13.3) WILD-TYPE   19   32
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                       10                             19
  CLUS_2                        8                             32
D50V5, multiclass
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                        7                             25
  CLUS_2                        7                             12
  CLUS_3                        6                             37
D50V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) CNV         15    5
  DEL PEAK 24(19P13.3) WILD-TYPE   68    6
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                        5                              6
  CLUS_2                       15                             68

Clustering(51) Variable = Del Peak 25(22q12.1)
D51V1, multiclass
        clus
vv       DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                        1                             27
  CLUS_2                       10                             26
  CLUS_3                        7                             26
D51V2, multiclass
        clus
vv       DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                        7                             16
  CLUS_2                        5                             23
  CLUS_3                        6                             39
D51V3, multiclass
D51V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(22Q12.1) CNV          8    6
  DEL PEAK 25(22Q12.1) WILD-TYPE   21   34
        clus
vv       DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                        8                             21
  CLUS_2                        6                             34
D51V5, multiclass
        clus
vv       DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                        6                             26
  CLUS_2                        3                             16
  CLUS_3                        9                             34
D51V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(22Q12.1) CNV         15    3
  DEL PEAK 25(22Q12.1) WILD-TYPE   68    8
        clus
vv       DEL PEAK 25(22Q12.1) CNV DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                        3                              8
  CLUS_2                       15                             68

Clustering(52) Variable = Del Peak 26(22q13.32)
D52V1, multiclass
        clus
vv       DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                         2                              26
  CLUS_2                        10                              26
  CLUS_3                        12                              21
D52V2, multiclass
        clus
vv       DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                         8                              15
  CLUS_2                         5                              23
  CLUS_3                        11                              34
D52V3, multiclass
D52V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(22Q13.32) CNV          8   10
  DEL PEAK 26(22Q13.32) WILD-TYPE   21   30
        clus
vv       DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                         8                              21
  CLUS_2                        10                              30
D52V5, multiclass
        clus
vv       DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                         7                              25
  CLUS_2                         7                              12
  CLUS_3                        10                              33
D52V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(22Q13.32) CNV         20    4
  DEL PEAK 26(22Q13.32) WILD-TYPE   63    7
        clus
vv       DEL PEAK 26(22Q13.32) CNV DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                         4                               7
  CLUS_2                        20                              63

Clustering(53) Variable = Del Peak 27(Xq27.3)
D53V1, multiclass
        clus
vv       DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                       2                            26
  CLUS_2                       2                            34
  CLUS_3                      10                            23
D53V2, multiclass
        clus
vv       DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                       1                            22
  CLUS_2                       7                            21
  CLUS_3                       6                            39
D53V3, multiclass
D53V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XQ27.3) CNV          3    8
  DEL PEAK 27(XQ27.3) WILD-TYPE   26   32
        clus
vv       DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                       3                            26
  CLUS_2                       8                            32
D53V5, multiclass
        clus
vv       DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                       5                            27
  CLUS_2                       4                            15
  CLUS_3                       5                            38
D53V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XQ27.3) CNV         11    3
  DEL PEAK 27(XQ27.3) WILD-TYPE   72    8
        clus
vv       DEL PEAK 27(XQ27.3) CNV DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                       3                             8
  CLUS_2                      11                            72
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"          "MRNASEQ_CNMF" 
                     V4                      V5                      V6 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
